FF:11513-119H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005939 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005939 | ||
|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186;DRZ012151;DRZ013536 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037211;DRR041577;DRZ007219 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000184 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11513-119H1 | |id=FF:11513-119H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000184 | ||
|is_obsolete= | |||
|library_id=CNhs11329 | |||
|library_id_phase_based=2:CNhs11329 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11513 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TAGCTT.11513 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11513 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TAGCTT.11513 | |||
|name=Smooth Muscle Cells - Tracheal, donor1 | |name=Smooth Muscle Cells - Tracheal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11329,LSID768,release014,COMPLETED | |profile_hcage=CNhs11329,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0380023575792621,0,0.515658115329287,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.160902404804953,0,0,0,0,0,0,0,0,0.142765520946319,0,0,0,0.437167932714935,0,0.020848220902112,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435952424767612,0.099160193832824,0,0,0.110316050696387,0.185312721065532,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00278659991036313,0,0,0,0.414430138349403,0.885958673194241,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3415 | |rna_catalog_number=SC3415 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119H1 | |rna_tube_id=119H1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.8741363760959e-223!GO:0005737;cytoplasm;7.13314693324032e-197!GO:0044444;cytoplasmic part;1.33215954398855e-154!GO:0043231;intracellular membrane-bound organelle;6.41195490038661e-144!GO:0043227;membrane-bound organelle;1.6384520652358e-143!GO:0043226;organelle;1.07202712431316e-142!GO:0043229;intracellular organelle;1.5139830312017e-142!GO:0044422;organelle part;7.7665187523393e-115!GO:0044446;intracellular organelle part;8.77066213785524e-114!GO:0005739;mitochondrion;1.50421527888078e-83!GO:0030529;ribonucleoprotein complex;2.08259742488636e-75!GO:0032991;macromolecular complex;7.26825183751191e-73!GO:0044237;cellular metabolic process;1.58639366869309e-66!GO:0044238;primary metabolic process;6.87901147612496e-65!GO:0005515;protein binding;7.31481200314252e-59!GO:0043233;organelle lumen;1.5872794082283e-58!GO:0031974;membrane-enclosed lumen;1.5872794082283e-58!GO:0044429;mitochondrial part;4.23624553670337e-56!GO:0031090;organelle membrane;1.07421513173061e-55!GO:0005840;ribosome;2.94181311373504e-54!GO:0043170;macromolecule metabolic process;4.03779544914949e-51!GO:0009058;biosynthetic process;9.79438701260118e-50!GO:0003735;structural constituent of ribosome;9.25914311534265e-49!GO:0003723;RNA binding;1.27656410327827e-47!GO:0006412;translation;2.08601154609007e-44!GO:0019538;protein metabolic process;1.10081941282309e-43!GO:0044249;cellular biosynthetic process;1.60204597073722e-43!GO:0044428;nuclear part;1.94049601484528e-43!GO:0033279;ribosomal subunit;5.72227111675344e-42!GO:0031967;organelle envelope;9.17923747406632e-42!GO:0031975;envelope;2.1171081286522e-41!GO:0044260;cellular macromolecule metabolic process;6.33600072238729e-40!GO:0005829;cytosol;1.12520393037964e-38!GO:0044267;cellular protein metabolic process;1.87419041279481e-38!GO:0009059;macromolecule biosynthetic process;2.3000131978715e-38!GO:0005740;mitochondrial envelope;3.01284483941874e-38!GO:0031966;mitochondrial membrane;4.88336042473316e-36!GO:0015031;protein transport;2.45365919508666e-35!GO:0016043;cellular component organization and biogenesis;7.23678232020814e-35!GO:0033036;macromolecule localization;2.42637208812032e-34!GO:0043234;protein complex;6.78839840680261e-34!GO:0019866;organelle inner membrane;3.64856093865766e-33!GO:0045184;establishment of protein localization;6.20773504015458e-33!GO:0006396;RNA processing;1.26410387200887e-32!GO:0008104;protein localization;1.31953024921442e-32!GO:0005743;mitochondrial inner membrane;1.67608447222555e-32!GO:0005634;nucleus;9.84373467135582e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.20251883433706e-30!GO:0031981;nuclear lumen;2.13082141721587e-28!GO:0046907;intracellular transport;5.18956570874e-26!GO:0016071;mRNA metabolic process;1.1967676982878e-24!GO:0044445;cytosolic part;4.41230882747385e-24!GO:0005783;endoplasmic reticulum;1.94182412894218e-23!GO:0006886;intracellular protein transport;2.46846355310169e-23!GO:0006119;oxidative phosphorylation;5.90964268128978e-23!GO:0044455;mitochondrial membrane part;7.11696450145567e-23!GO:0006996;organelle organization and biogenesis;2.30570074393817e-22!GO:0031980;mitochondrial lumen;2.97410899675551e-22!GO:0005759;mitochondrial matrix;2.97410899675551e-22!GO:0008380;RNA splicing;1.49713149363102e-21!GO:0065003;macromolecular complex assembly;1.54728467116067e-21!GO:0015934;large ribosomal subunit;1.77277007835132e-21!GO:0015935;small ribosomal subunit;1.77785621477733e-21!GO:0006397;mRNA processing;1.46357019953757e-20!GO:0044432;endoplasmic reticulum part;5.81203848066279e-20!GO:0010467;gene expression;7.29995817377762e-20!GO:0051186;cofactor metabolic process;8.44259601151611e-20!GO:0043283;biopolymer metabolic process;9.34667354124736e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.62351429863104e-19!GO:0022607;cellular component assembly;2.59813551939235e-19!GO:0012505;endomembrane system;4.60296265738e-19!GO:0005746;mitochondrial respiratory chain;9.36066070522255e-19!GO:0043228;non-membrane-bound organelle;1.26971181858587e-18!GO:0043232;intracellular non-membrane-bound organelle;1.26971181858587e-18!GO:0006457;protein folding;1.9125413506209e-18!GO:0048770;pigment granule;6.34976609867008e-18!GO:0042470;melanosome;6.34976609867008e-18!GO:0005654;nucleoplasm;1.71303149289191e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.84492316298361e-16!GO:0005794;Golgi apparatus;6.71369924225474e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.71369924225474e-16!GO:0003954;NADH dehydrogenase activity;6.71369924225474e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.71369924225474e-16!GO:0005681;spliceosome;6.90431473727148e-16!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.23265777758991e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.42596032835217e-15!GO:0051649;establishment of cellular localization;1.89624142646248e-15!GO:0051641;cellular localization;1.92143399500343e-15!GO:0005761;mitochondrial ribosome;4.09970434926241e-15!GO:0000313;organellar ribosome;4.09970434926241e-15!GO:0016874;ligase activity;4.12086876429773e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.14617463010537e-15!GO:0006732;coenzyme metabolic process;1.04869557303478e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.00731561579854e-14!GO:0042773;ATP synthesis coupled electron transport;2.00731561579854e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.1350764189754e-14!GO:0005789;endoplasmic reticulum membrane;2.81045177328703e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.15248570447291e-14!GO:0045271;respiratory chain complex I;4.15248570447291e-14!GO:0005747;mitochondrial respiratory chain complex I;4.15248570447291e-14!GO:0044451;nucleoplasm part;5.1462737113843e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.82979905432144e-14!GO:0016491;oxidoreductase activity;6.91551138061136e-14!GO:0005730;nucleolus;1.02488135447866e-13!GO:0008134;transcription factor binding;1.08997032094435e-13!GO:0044248;cellular catabolic process;1.22611028729684e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.31546786639595e-13!GO:0006259;DNA metabolic process;2.35726614350891e-13!GO:0009055;electron carrier activity;6.20081942536582e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.57786074889132e-13!GO:0044265;cellular macromolecule catabolic process;1.10155918362942e-12!GO:0051082;unfolded protein binding;1.14210967379916e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.75218851300457e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8556387194899e-12!GO:0016462;pyrophosphatase activity;2.04498150887857e-12!GO:0006512;ubiquitin cycle;3.10882849246264e-12!GO:0006605;protein targeting;3.57410247507154e-12!GO:0043285;biopolymer catabolic process;3.74902342841171e-12!GO:0009057;macromolecule catabolic process;7.4280875936914e-12!GO:0048193;Golgi vesicle transport;1.44345635563269e-11!GO:0017111;nucleoside-triphosphatase activity;1.4500113351478e-11!GO:0016192;vesicle-mediated transport;3.094054757797e-11!GO:0022618;protein-RNA complex assembly;6.49939636969366e-11!GO:0006163;purine nucleotide metabolic process;7.41371089253993e-11!GO:0009259;ribonucleotide metabolic process;8.18042274940788e-11!GO:0009150;purine ribonucleotide metabolic process;1.36674490655883e-10!GO:0000166;nucleotide binding;1.75680566979623e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.54335487034735e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.30356425530672e-10!GO:0005793;ER-Golgi intermediate compartment;3.4785777727838e-10!GO:0051188;cofactor biosynthetic process;3.4785777727838e-10!GO:0019941;modification-dependent protein catabolic process;4.10393727093192e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.10393727093192e-10!GO:0044257;cellular protein catabolic process;4.40543994748189e-10!GO:0006091;generation of precursor metabolites and energy;4.41790813641794e-10!GO:0043412;biopolymer modification;4.5487799837089e-10!GO:0012501;programmed cell death;4.61809252943637e-10!GO:0008135;translation factor activity, nucleic acid binding;5.29846785889372e-10!GO:0006164;purine nucleotide biosynthetic process;5.93576067131689e-10!GO:0006511;ubiquitin-dependent protein catabolic process;7.02968658604209e-10!GO:0006915;apoptosis;7.99981875391956e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.07237879270927e-09!GO:0030163;protein catabolic process;1.16602318474372e-09!GO:0009260;ribonucleotide biosynthetic process;1.24014699869249e-09!GO:0007049;cell cycle;1.72529456608748e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.7524907615259e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.38609502856851e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.23107906032638e-09!GO:0000375;RNA splicing, via transesterification reactions;3.23107906032638e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.23107906032638e-09!GO:0009141;nucleoside triphosphate metabolic process;3.64073100106709e-09!GO:0003712;transcription cofactor activity;3.75394907506831e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.86251569738248e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.86251569738248e-09!GO:0015078;hydrogen ion transmembrane transporter activity;4.56114855908448e-09!GO:0008219;cell death;5.18738425408937e-09!GO:0016265;death;5.18738425408937e-09!GO:0006464;protein modification process;5.26747646341099e-09!GO:0009117;nucleotide metabolic process;7.56431475343594e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.96534994460409e-09!GO:0042254;ribosome biogenesis and assembly;9.95329653895811e-09!GO:0007005;mitochondrion organization and biogenesis;1.35163614629422e-08!GO:0009056;catabolic process;1.59223331680043e-08!GO:0005768;endosome;2.41508795918401e-08!GO:0005773;vacuole;2.56995339690979e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.76081632798637e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.76081632798637e-08!GO:0009060;aerobic respiration;2.97282306162391e-08!GO:0006399;tRNA metabolic process;4.18889859065705e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.48310204270025e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.48310204270025e-08!GO:0015986;ATP synthesis coupled proton transport;4.48310204270025e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.48310204270025e-08!GO:0046034;ATP metabolic process;4.81850658987439e-08!GO:0045333;cellular respiration;6.15311018701361e-08!GO:0003743;translation initiation factor activity;8.75204460119599e-08!GO:0008565;protein transporter activity;9.57556703583471e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.14763718128811e-07!GO:0008639;small protein conjugating enzyme activity;1.27564343372624e-07!GO:0005788;endoplasmic reticulum lumen;1.3368656355089e-07!GO:0009108;coenzyme biosynthetic process;1.39947470564349e-07!GO:0022402;cell cycle process;1.61581663552e-07!GO:0008654;phospholipid biosynthetic process;1.73504430885573e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.8804519363705e-07!GO:0017076;purine nucleotide binding;2.19570207529435e-07!GO:0004842;ubiquitin-protein ligase activity;2.83190369307635e-07!GO:0019787;small conjugating protein ligase activity;2.95682003687566e-07!GO:0019829;cation-transporting ATPase activity;3.45572302400695e-07!GO:0006461;protein complex assembly;3.50240334730441e-07!GO:0000323;lytic vacuole;3.52080223855211e-07!GO:0005764;lysosome;3.52080223855211e-07!GO:0008610;lipid biosynthetic process;4.41341101899102e-07!GO:0006754;ATP biosynthetic process;5.25530351241142e-07!GO:0006753;nucleoside phosphate metabolic process;5.25530351241142e-07!GO:0032553;ribonucleotide binding;6.15752847392166e-07!GO:0032555;purine ribonucleotide binding;6.15752847392166e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.36427613115278e-07!GO:0042981;regulation of apoptosis;6.39670628929824e-07!GO:0043687;post-translational protein modification;6.41465570197324e-07!GO:0016740;transferase activity;6.45732180068627e-07!GO:0006413;translational initiation;7.0429844895701e-07!GO:0043067;regulation of programmed cell death;7.59616549427686e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.78437135749327e-07!GO:0006913;nucleocytoplasmic transport;8.58942873098693e-07!GO:0051726;regulation of cell cycle;8.62220284796493e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;8.76812745093474e-07!GO:0016881;acid-amino acid ligase activity;9.04698794476944e-07!GO:0000074;regulation of progression through cell cycle;9.25869100416627e-07!GO:0044431;Golgi apparatus part;9.86675888869734e-07!GO:0044440;endosomal part;1.06775422727921e-06!GO:0010008;endosome membrane;1.06775422727921e-06!GO:0030120;vesicle coat;1.12959574582709e-06!GO:0030662;coated vesicle membrane;1.12959574582709e-06!GO:0017038;protein import;1.21344087181967e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2322669550557e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.2322669550557e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2322669550557e-06!GO:0048475;coated membrane;1.240045675962e-06!GO:0030117;membrane coat;1.240045675962e-06!GO:0045259;proton-transporting ATP synthase complex;1.24866635044527e-06!GO:0048523;negative regulation of cellular process;1.25370382000187e-06!GO:0003924;GTPase activity;1.34349437157521e-06!GO:0005635;nuclear envelope;1.35709546881965e-06!GO:0051169;nuclear transport;1.64019497590145e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.76351594716496e-06!GO:0016853;isomerase activity;1.90418672472803e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.05929561698222e-06!GO:0006323;DNA packaging;2.79401824708831e-06!GO:0006364;rRNA processing;2.86248216609917e-06!GO:0043038;amino acid activation;3.00647132088051e-06!GO:0006418;tRNA aminoacylation for protein translation;3.00647132088051e-06!GO:0043039;tRNA aminoacylation;3.00647132088051e-06!GO:0000278;mitotic cell cycle;3.11601600483224e-06!GO:0006446;regulation of translational initiation;3.3619966721954e-06!GO:0006099;tricarboxylic acid cycle;3.49811120729485e-06!GO:0046356;acetyl-CoA catabolic process;3.49811120729485e-06!GO:0031988;membrane-bound vesicle;3.49811120729485e-06!GO:0051187;cofactor catabolic process;3.88682435616837e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.03481522689453e-06!GO:0016604;nuclear body;4.07515615483712e-06!GO:0065002;intracellular protein transport across a membrane;4.77469819057741e-06!GO:0006974;response to DNA damage stimulus;5.27921426033549e-06!GO:0016072;rRNA metabolic process;5.27921426033549e-06!GO:0006916;anti-apoptosis;5.57561709969102e-06!GO:0031965;nuclear membrane;5.8482540456195e-06!GO:0005762;mitochondrial large ribosomal subunit;6.15541669769927e-06!GO:0000315;organellar large ribosomal subunit;6.15541669769927e-06!GO:0044262;cellular carbohydrate metabolic process;8.05179707700712e-06!GO:0006084;acetyl-CoA metabolic process;8.37964302145356e-06!GO:0005770;late endosome;8.62236570424391e-06!GO:0009109;coenzyme catabolic process;9.94309101740175e-06!GO:0045454;cell redox homeostasis;1.01837852956158e-05!GO:0051246;regulation of protein metabolic process;1.07101646282194e-05!GO:0043069;negative regulation of programmed cell death;1.16695170275236e-05!GO:0046474;glycerophospholipid biosynthetic process;1.17772240392161e-05!GO:0006752;group transfer coenzyme metabolic process;1.31754947596726e-05!GO:0043066;negative regulation of apoptosis;1.3327142675124e-05!GO:0048519;negative regulation of biological process;1.57722481487506e-05!GO:0031252;leading edge;1.74179945171744e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.75089498352674e-05!GO:0031410;cytoplasmic vesicle;1.86183256952245e-05!GO:0016787;hydrolase activity;1.95121971976539e-05!GO:0065004;protein-DNA complex assembly;2.29221379414305e-05!GO:0004298;threonine endopeptidase activity;2.29606930846634e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.34457062123666e-05!GO:0031982;vesicle;2.34457062123666e-05!GO:0000139;Golgi membrane;2.69521861429453e-05!GO:0030554;adenyl nucleotide binding;2.70899637536617e-05!GO:0009165;nucleotide biosynthetic process;2.94758342474739e-05!GO:0006366;transcription from RNA polymerase II promoter;3.14075448458941e-05!GO:0016564;transcription repressor activity;3.27714348663423e-05!GO:0005905;coated pit;3.30171154379697e-05!GO:0051276;chromosome organization and biogenesis;3.53162417349849e-05!GO:0019843;rRNA binding;4.12111162637734e-05!GO:0016126;sterol biosynthetic process;4.28925260392036e-05!GO:0031968;organelle outer membrane;4.38549454597534e-05!GO:0016779;nucleotidyltransferase activity;4.38868807200088e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.59664667081968e-05!GO:0003714;transcription corepressor activity;4.6336363170362e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;4.6336363170362e-05!GO:0016859;cis-trans isomerase activity;4.65754120321871e-05!GO:0019867;outer membrane;4.73871974987851e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.95715889423264e-05!GO:0009719;response to endogenous stimulus;5.16051838107194e-05!GO:0044453;nuclear membrane part;5.58092565884757e-05!GO:0005667;transcription factor complex;5.62832860484935e-05!GO:0032559;adenyl ribonucleotide binding;5.79241018466964e-05!GO:0005524;ATP binding;6.42563292027009e-05!GO:0000314;organellar small ribosomal subunit;6.61760150947367e-05!GO:0005763;mitochondrial small ribosomal subunit;6.61760150947367e-05!GO:0006333;chromatin assembly or disassembly;6.97446139422706e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.28282368850098e-05!GO:0008361;regulation of cell size;7.54922981619989e-05!GO:0042623;ATPase activity, coupled;7.78945428677504e-05!GO:0003676;nucleic acid binding;8.06783233586083e-05!GO:0005741;mitochondrial outer membrane;8.11117407823253e-05!GO:0016049;cell growth;8.12017253695675e-05!GO:0045786;negative regulation of progression through cell cycle;9.42378043805041e-05!GO:0006082;organic acid metabolic process;9.79785619703898e-05!GO:0006118;electron transport;9.9185063324925e-05!GO:0005791;rough endoplasmic reticulum;0.000104683300901415!GO:0016070;RNA metabolic process;0.000105163320395338!GO:0019752;carboxylic acid metabolic process;0.000109133394005746!GO:0030133;transport vesicle;0.000109133394005746!GO:0003713;transcription coactivator activity;0.000109175919454947!GO:0046467;membrane lipid biosynthetic process;0.000109175919454947!GO:0006626;protein targeting to mitochondrion;0.000109299687747669!GO:0033116;ER-Golgi intermediate compartment membrane;0.00012492848329525!GO:0016607;nuclear speck;0.000126190579750207!GO:0016567;protein ubiquitination;0.000132098147063383!GO:0000785;chromatin;0.000139500333589873!GO:0030867;rough endoplasmic reticulum membrane;0.000146820130077429!GO:0031497;chromatin assembly;0.000157990985707214!GO:0016887;ATPase activity;0.000160276830744521!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000161163235051834!GO:0006281;DNA repair;0.000169857210090516!GO:0016563;transcription activator activity;0.000174549930106351!GO:0005525;GTP binding;0.000182288640296794!GO:0006334;nucleosome assembly;0.000207460925504578!GO:0003899;DNA-directed RNA polymerase activity;0.000228059857521647!GO:0032446;protein modification by small protein conjugation;0.000245326962293363!GO:0019899;enzyme binding;0.00025216184034531!GO:0000245;spliceosome assembly;0.000260220766840677!GO:0001558;regulation of cell growth;0.000271009370100308!GO:0006839;mitochondrial transport;0.000285308796105453!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000297803541910066!GO:0005048;signal sequence binding;0.000305080958730271!GO:0030176;integral to endoplasmic reticulum membrane;0.000310096938594014!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000310096938594014!GO:0043681;protein import into mitochondrion;0.000339714421530785!GO:0016568;chromatin modification;0.000367767133274776!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000372517453211698!GO:0003697;single-stranded DNA binding;0.000378195858250294!GO:0016044;membrane organization and biogenesis;0.000390903841653621!GO:0046489;phosphoinositide biosynthetic process;0.000410357731828797!GO:0005774;vacuolar membrane;0.000417438684514692!GO:0005798;Golgi-associated vesicle;0.000434450813433519!GO:0006979;response to oxidative stress;0.000449709595055662!GO:0000151;ubiquitin ligase complex;0.000458125097871259!GO:0031324;negative regulation of cellular metabolic process;0.000466726668707865!GO:0031902;late endosome membrane;0.00051206583071184!GO:0008250;oligosaccharyl transferase complex;0.000516731629912249!GO:0006613;cotranslational protein targeting to membrane;0.000528756385463486!GO:0043284;biopolymer biosynthetic process;0.00057006708720599!GO:0030029;actin filament-based process;0.000573083157323994!GO:0022890;inorganic cation transmembrane transporter activity;0.000573083157323994!GO:0051427;hormone receptor binding;0.000573083157323994!GO:0044255;cellular lipid metabolic process;0.000577668467636541!GO:0051789;response to protein stimulus;0.000623525733526967!GO:0006986;response to unfolded protein;0.000623525733526967!GO:0051170;nuclear import;0.000633609819023289!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0006584937678359!GO:0005769;early endosome;0.000658990392029874!GO:0032561;guanyl ribonucleotide binding;0.000701587552804125!GO:0019001;guanyl nucleotide binding;0.000701587552804125!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000714119051969841!GO:0006695;cholesterol biosynthetic process;0.000714119051969841!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000830156248159212!GO:0015002;heme-copper terminal oxidase activity;0.000830156248159212!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000830156248159212!GO:0004129;cytochrome-c oxidase activity;0.000830156248159212!GO:0051329;interphase of mitotic cell cycle;0.000842987309101094!GO:0006260;DNA replication;0.000868451452808429!GO:0051920;peroxiredoxin activity;0.000884030346433091!GO:0044427;chromosomal part;0.000892595787283627!GO:0005643;nuclear pore;0.000909549354258108!GO:0006793;phosphorus metabolic process;0.000926916235075491!GO:0006796;phosphate metabolic process;0.000926916235075491!GO:0048522;positive regulation of cellular process;0.00094136468310711!GO:0006606;protein import into nucleus;0.000962503652029228!GO:0035257;nuclear hormone receptor binding;0.00104467738086681!GO:0050662;coenzyme binding;0.00105953585468137!GO:0015992;proton transport;0.00105953585468137!GO:0006818;hydrogen transport;0.001079392183683!GO:0007006;mitochondrial membrane organization and biogenesis;0.00115260459174736!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00115283887758945!GO:0015399;primary active transmembrane transporter activity;0.00115283887758945!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00117855676635635!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00117891509561506!GO:0044437;vacuolar part;0.00119336033545817!GO:0018196;peptidyl-asparagine modification;0.00133941020686071!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00133941020686071!GO:0006778;porphyrin metabolic process;0.00138999535553564!GO:0033013;tetrapyrrole metabolic process;0.00138999535553564!GO:0005765;lysosomal membrane;0.00139547230107567!GO:0006414;translational elongation;0.00147372096920287!GO:0046930;pore complex;0.00149724881083534!GO:0065009;regulation of a molecular function;0.00150780251645875!GO:0046483;heterocycle metabolic process;0.00153833421197536!GO:0022403;cell cycle phase;0.00156050155010834!GO:0007040;lysosome organization and biogenesis;0.00163005821268023!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00167332281567562!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00167332281567562!GO:0043623;cellular protein complex assembly;0.00167353478036808!GO:0006650;glycerophospholipid metabolic process;0.00168358948897525!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00173846045776284!GO:0051325;interphase;0.00179617107351028!GO:0005694;chromosome;0.00180063576709607!GO:0005885;Arp2/3 protein complex;0.00184364034613665!GO:0009892;negative regulation of metabolic process;0.00194964114679593!GO:0030132;clathrin coat of coated pit;0.00196363383436476!GO:0043488;regulation of mRNA stability;0.00196682804387264!GO:0043487;regulation of RNA stability;0.00196682804387264!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00205031862154026!GO:0030118;clathrin coat;0.0020827481987162!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00216598098180683!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00216598098180683!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00216598098180683!GO:0048037;cofactor binding;0.00227458681752216!GO:0016125;sterol metabolic process;0.00233371191327911!GO:0016310;phosphorylation;0.00239295340191945!GO:0040008;regulation of growth;0.00242016663429069!GO:0004576;oligosaccharyl transferase activity;0.00253547110193234!GO:0006629;lipid metabolic process;0.00263062821620371!GO:0030880;RNA polymerase complex;0.00277427299829318!GO:0043566;structure-specific DNA binding;0.00277427299829318!GO:0008632;apoptotic program;0.00287277612246125!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0030324098075025!GO:0016481;negative regulation of transcription;0.0031397740292851!GO:0008026;ATP-dependent helicase activity;0.00338321511358627!GO:0042168;heme metabolic process;0.00361571011402912!GO:0016860;intramolecular oxidoreductase activity;0.00361571011402912!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00363995025654463!GO:0008033;tRNA processing;0.00370818534690032!GO:0006779;porphyrin biosynthetic process;0.00384831149485043!GO:0033014;tetrapyrrole biosynthetic process;0.00384831149485043!GO:0007033;vacuole organization and biogenesis;0.00385621230402568!GO:0006740;NADPH regeneration;0.00391635236916516!GO:0006098;pentose-phosphate shunt;0.00391635236916516!GO:0001726;ruffle;0.00395531706722756!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00406636857288645!GO:0048471;perinuclear region of cytoplasm;0.00410032964141528!GO:0006506;GPI anchor biosynthetic process;0.00410032964141528!GO:0000087;M phase of mitotic cell cycle;0.00412659536445722!GO:0007067;mitosis;0.00429380007046313!GO:0051287;NAD binding;0.00468751819060794!GO:0043021;ribonucleoprotein binding;0.00506715557749782!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0052421755405857!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0006790;sulfur metabolic process;0.00525193910241453!GO:0006807;nitrogen compound metabolic process;0.00526431674240319!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00531370011140623!GO:0007243;protein kinase cascade;0.00531370011140623!GO:0030119;AP-type membrane coat adaptor complex;0.00555460431883972!GO:0006066;alcohol metabolic process;0.0056262207923711!GO:0006520;amino acid metabolic process;0.00572445371998682!GO:0004177;aminopeptidase activity;0.00573169469946285!GO:0006497;protein amino acid lipidation;0.00585474694888143!GO:0048487;beta-tubulin binding;0.00590819916241372!GO:0017166;vinculin binding;0.00590819916241372!GO:0004386;helicase activity;0.00590819916241372!GO:0007010;cytoskeleton organization and biogenesis;0.00593121409792831!GO:0042158;lipoprotein biosynthetic process;0.00604854084893507!GO:0045941;positive regulation of transcription;0.00614381070848622!GO:0006402;mRNA catabolic process;0.00623194322594391!GO:0006612;protein targeting to membrane;0.00629199605355479!GO:0007264;small GTPase mediated signal transduction;0.00635228789970502!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00641270720607062!GO:0000428;DNA-directed RNA polymerase complex;0.00641270720607062!GO:0006643;membrane lipid metabolic process;0.00644934720810969!GO:0030663;COPI coated vesicle membrane;0.00649169944936442!GO:0030126;COPI vesicle coat;0.00649169944936442!GO:0006509;membrane protein ectodomain proteolysis;0.00655149509559952!GO:0033619;membrane protein proteolysis;0.00655149509559952!GO:0006505;GPI anchor metabolic process;0.00663270053433814!GO:0004364;glutathione transferase activity;0.0067453651762581!GO:0030137;COPI-coated vesicle;0.00744717511599377!GO:0030145;manganese ion binding;0.00749413499894014!GO:0005684;U2-dependent spliceosome;0.00755820297330074!GO:0008637;apoptotic mitochondrial changes;0.00761795744730555!GO:0051348;negative regulation of transferase activity;0.0077546082744544!GO:0033673;negative regulation of kinase activity;0.00776032706942131!GO:0006469;negative regulation of protein kinase activity;0.00776032706942131!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00820899748734491!GO:0006733;oxidoreduction coenzyme metabolic process;0.00820899748734491!GO:0030131;clathrin adaptor complex;0.00864031636921222!GO:0015630;microtubule cytoskeleton;0.00884587980139656!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00889605403423336!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00946257541895978!GO:0006783;heme biosynthetic process;0.00957754736685299!GO:0030658;transport vesicle membrane;0.0096373257470699!GO:0006595;polyamine metabolic process;0.00980851707318323!GO:0006383;transcription from RNA polymerase III promoter;0.00980851707318323!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0100334549674532!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0101114523013366!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0101792546491461!GO:0043492;ATPase activity, coupled to movement of substances;0.0101814438329648!GO:0006891;intra-Golgi vesicle-mediated transport;0.0102014624152548!GO:0045893;positive regulation of transcription, DNA-dependent;0.0103485190302829!GO:0051087;chaperone binding;0.0103538810339705!GO:0005975;carbohydrate metabolic process;0.0104588952263224!GO:0030027;lamellipodium;0.0107547620209709!GO:0051301;cell division;0.0110228358096522!GO:0008092;cytoskeletal protein binding;0.0111425784698685!GO:0042802;identical protein binding;0.0113232514816767!GO:0016272;prefoldin complex;0.0118716897887216!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0119151445664796!GO:0008243;plasminogen activator activity;0.011922960028921!GO:0009112;nucleobase metabolic process;0.0120045566394864!GO:0008286;insulin receptor signaling pathway;0.0120607825982135!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0120661214643323!GO:0003724;RNA helicase activity;0.0122048195174365!GO:0050657;nucleic acid transport;0.0122752853531047!GO:0051236;establishment of RNA localization;0.0122752853531047!GO:0050658;RNA transport;0.0122752853531047!GO:0006767;water-soluble vitamin metabolic process;0.0125536591152259!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0125623116514309!GO:0015036;disulfide oxidoreductase activity;0.0126692156971575!GO:0006644;phospholipid metabolic process;0.012711248426671!GO:0006403;RNA localization;0.0127654778545738!GO:0031072;heat shock protein binding;0.0130069911011033!GO:0016741;transferase activity, transferring one-carbon groups;0.0131199440753189!GO:0008168;methyltransferase activity;0.0132144618054043!GO:0000030;mannosyltransferase activity;0.0132354839167185!GO:0007050;cell cycle arrest;0.0132840169424952!GO:0006739;NADP metabolic process;0.0133490816897548!GO:0035035;histone acetyltransferase binding;0.0139244034098906!GO:0044452;nucleolar part;0.013961269095041!GO:0048468;cell development;0.0144454629887097!GO:0006769;nicotinamide metabolic process;0.0145636754131389!GO:0009308;amine metabolic process;0.0145854768936651!GO:0033559;unsaturated fatty acid metabolic process;0.0148248006276952!GO:0006636;unsaturated fatty acid biosynthetic process;0.0148248006276952!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0150155713617656!GO:0016197;endosome transport;0.0150971623451614!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0152257628378557!GO:0030125;clathrin vesicle coat;0.0156504191712696!GO:0030665;clathrin coated vesicle membrane;0.0156504191712696!GO:0005862;muscle thin filament tropomyosin;0.0159904444712773!GO:0048518;positive regulation of biological process;0.0167023281120186!GO:0006401;RNA catabolic process;0.0167847103440136!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0169569920289367!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0173835207007737!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0174818609469916!GO:0051252;regulation of RNA metabolic process;0.0175355232006928!GO:0005869;dynactin complex;0.0177109236558266!GO:0031272;regulation of pseudopodium formation;0.018306351161203!GO:0031269;pseudopodium formation;0.018306351161203!GO:0031344;regulation of cell projection organization and biogenesis;0.018306351161203!GO:0031268;pseudopodium organization and biogenesis;0.018306351161203!GO:0031346;positive regulation of cell projection organization and biogenesis;0.018306351161203!GO:0031274;positive regulation of pseudopodium formation;0.018306351161203!GO:0000096;sulfur amino acid metabolic process;0.0188062164991795!GO:0008652;amino acid biosynthetic process;0.01888699842556!GO:0030384;phosphoinositide metabolic process;0.01888699842556!GO:0030134;ER to Golgi transport vesicle;0.0188882170943925!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.018975615680021!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0192153759969285!GO:0009303;rRNA transcription;0.0193632556432362!GO:0006220;pyrimidine nucleotide metabolic process;0.019570780379944!GO:0051540;metal cluster binding;0.0197711325827295!GO:0051536;iron-sulfur cluster binding;0.0197711325827295!GO:0030308;negative regulation of cell growth;0.0205802319278286!GO:0030659;cytoplasmic vesicle membrane;0.0205802319278286!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0207530366177661!GO:0045792;negative regulation of cell size;0.0207851395895415!GO:0035258;steroid hormone receptor binding;0.0212432060298568!GO:0006749;glutathione metabolic process;0.0212432060298568!GO:0030660;Golgi-associated vesicle membrane;0.0212561640099954!GO:0008186;RNA-dependent ATPase activity;0.0220740137654896!GO:0001836;release of cytochrome c from mitochondria;0.0223804121966245!GO:0031124;mRNA 3'-end processing;0.0225090256989924!GO:0000209;protein polyubiquitination;0.0225259332086915!GO:0005758;mitochondrial intermembrane space;0.0225259332086915!GO:0030521;androgen receptor signaling pathway;0.023116496403867!GO:0030041;actin filament polymerization;0.023159661111257!GO:0008203;cholesterol metabolic process;0.0231853049653046!GO:0030508;thiol-disulfide exchange intermediate activity;0.0238355703171867!GO:0007021;tubulin folding;0.0242397828321081!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0249403456817207!GO:0030127;COPII vesicle coat;0.0249535361298436!GO:0012507;ER to Golgi transport vesicle membrane;0.0249535361298436!GO:0006458;'de novo' protein folding;0.0250939971620268!GO:0051084;'de novo' posttranslational protein folding;0.0250939971620268!GO:0043414;biopolymer methylation;0.0255131434712779!GO:0004860;protein kinase inhibitor activity;0.0258443820513148!GO:0008538;proteasome activator activity;0.0258783501562153!GO:0050794;regulation of cellular process;0.0263299178352249!GO:0005996;monosaccharide metabolic process;0.0265584498792524!GO:0051168;nuclear export;0.0267037081260605!GO:0031970;organelle envelope lumen;0.0267084293664579!GO:0046426;negative regulation of JAK-STAT cascade;0.026883972919183!GO:0048500;signal recognition particle;0.027073918972232!GO:0031301;integral to organelle membrane;0.0271465911233917!GO:0006007;glucose catabolic process;0.0272434146967365!GO:0007034;vacuolar transport;0.0272666747481559!GO:0006289;nucleotide-excision repair;0.0278137869643392!GO:0003756;protein disulfide isomerase activity;0.0286843968505518!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0286843968505518!GO:0008139;nuclear localization sequence binding;0.0291060431581998!GO:0009116;nucleoside metabolic process;0.0294783747873845!GO:0019318;hexose metabolic process;0.0295322733912816!GO:0050790;regulation of catalytic activity;0.0299593314999787!GO:0051101;regulation of DNA binding;0.0301771878006813!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.030395056665434!GO:0006897;endocytosis;0.0304830447817677!GO:0010324;membrane invagination;0.0304830447817677!GO:0031529;ruffle organization and biogenesis;0.0306513755811546!GO:0005100;Rho GTPase activator activity;0.0306513755811546!GO:0043065;positive regulation of apoptosis;0.0306649808724371!GO:0030031;cell projection biogenesis;0.0312707003535382!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0322397135304147!GO:0051271;negative regulation of cell motility;0.0326452057326499!GO:0003729;mRNA binding;0.0331950959812395!GO:0008312;7S RNA binding;0.0334191564958467!GO:0019206;nucleoside kinase activity;0.0334191564958467!GO:0000049;tRNA binding;0.0334191564958467!GO:0009967;positive regulation of signal transduction;0.033723140314219!GO:0005813;centrosome;0.0337461854205851!GO:0043068;positive regulation of programmed cell death;0.0344652540953208!GO:0000082;G1/S transition of mitotic cell cycle;0.0344652540953208!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0366967081538571!GO:0045926;negative regulation of growth;0.0366967081538571!GO:0000786;nucleosome;0.0368070527292214!GO:0008213;protein amino acid alkylation;0.036808253021111!GO:0006479;protein amino acid methylation;0.036808253021111!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0374367173201318!GO:0010257;NADH dehydrogenase complex assembly;0.0374367173201318!GO:0033108;mitochondrial respiratory chain complex assembly;0.0374367173201318!GO:0051539;4 iron, 4 sulfur cluster binding;0.0374389436604364!GO:0019362;pyridine nucleotide metabolic process;0.0393095649894833!GO:0006354;RNA elongation;0.0395218785974418!GO:0006635;fatty acid beta-oxidation;0.0395663255216736!GO:0015631;tubulin binding;0.0400947940129163!GO:0040029;regulation of gene expression, epigenetic;0.0406978285225184!GO:0045892;negative regulation of transcription, DNA-dependent;0.040874708501045!GO:0051128;regulation of cellular component organization and biogenesis;0.040874708501045!GO:0008320;protein transmembrane transporter activity;0.0417148461063062!GO:0004004;ATP-dependent RNA helicase activity;0.0418179632688579!GO:0046519;sphingoid metabolic process;0.0421800786361564!GO:0008147;structural constituent of bone;0.0425292617110466!GO:0016408;C-acyltransferase activity;0.0431728838891718!GO:0000118;histone deacetylase complex;0.0433703125779798!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0435912403419732!GO:0008154;actin polymerization and/or depolymerization;0.0435912403419732!GO:0030503;regulation of cell redox homeostasis;0.0438048241893216!GO:0003746;translation elongation factor activity;0.043933337275189!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.044765835319931!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0451033041873588!GO:0045047;protein targeting to ER;0.0451033041873588!GO:0030100;regulation of endocytosis;0.0451033041873588!GO:0006730;one-carbon compound metabolic process;0.0451364845463849!GO:0050811;GABA receptor binding;0.0457147689035693!GO:0005815;microtubule organizing center;0.0458144745511123!GO:0003711;transcription elongation regulator activity;0.0462818829742572!GO:0031418;L-ascorbic acid binding;0.0464096226744758!GO:0051775;response to redox state;0.0465438282283069!GO:0006980;redox signal response;0.0465438282283069!GO:0030433;ER-associated protein catabolic process;0.0475262131448862!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0475262131448862!GO:0043433;negative regulation of transcription factor activity;0.0476403662551709!GO:0045334;clathrin-coated endocytic vesicle;0.04795402314974!GO:0051604;protein maturation;0.048226049503218!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.048226049503218!GO:0004784;superoxide dismutase activity;0.048226049503218!GO:0051537;2 iron, 2 sulfur cluster binding;0.048488058576236!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0487197532532346!GO:0045039;protein import into mitochondrial inner membrane;0.0487197532532346!GO:0008047;enzyme activator activity;0.0489730324643797!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0496698435723996 | |||
|sample_id=11513 | |sample_id=11513 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114 | |top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11513-119H1;search_select_hide=table117:FF:11513-119H1 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Tracheal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11329 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11329
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11329
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.255 |
| 10 | 10 | 0.713 |
| 100 | 100 | 0.569 |
| 101 | 101 | 0.782 |
| 102 | 102 | 0.639 |
| 103 | 103 | 0.174 |
| 104 | 104 | 0.452 |
| 105 | 105 | 0.366 |
| 106 | 106 | 0.0435 |
| 107 | 107 | 0.0499 |
| 108 | 108 | 0.195 |
| 109 | 109 | 0.115 |
| 11 | 11 | 0.0591 |
| 110 | 110 | 0.134 |
| 111 | 111 | 0.344 |
| 112 | 112 | 0.329 |
| 113 | 113 | 0.274 |
| 114 | 114 | 0.131 |
| 115 | 115 | 0.296 |
| 116 | 116 | 0.129 |
| 117 | 117 | 0.616 |
| 118 | 118 | 0.592 |
| 119 | 119 | 0.216 |
| 12 | 12 | 0.675 |
| 120 | 120 | 0.528 |
| 121 | 121 | 0.811 |
| 122 | 122 | 0.886 |
| 123 | 123 | 0.371 |
| 124 | 124 | 0.148 |
| 125 | 125 | 0.56 |
| 126 | 126 | 0.556 |
| 127 | 127 | 0.194 |
| 128 | 128 | 0.0314 |
| 129 | 129 | 0.513 |
| 13 | 13 | 0.497 |
| 130 | 130 | 0.87 |
| 131 | 131 | 0.949 |
| 132 | 132 | 0.553 |
| 133 | 133 | 0.861 |
| 134 | 134 | 0.477 |
| 135 | 135 | 0.123 |
| 136 | 136 | 0.658 |
| 137 | 137 | 0.226 |
| 138 | 138 | 0.583 |
| 139 | 139 | 0.117 |
| 14 | 14 | 0.885 |
| 140 | 140 | 0.673 |
| 141 | 141 | 0.644 |
| 142 | 142 | 0.723 |
| 143 | 143 | 0.0284 |
| 144 | 144 | 0.457 |
| 145 | 145 | 0.256 |
| 146 | 146 | 0.537 |
| 147 | 147 | 0.288 |
| 148 | 148 | 0.232 |
| 149 | 149 | 0.00767 |
| 15 | 15 | 0.432 |
| 150 | 150 | 0.54 |
| 151 | 151 | 0.344 |
| 152 | 152 | 0.128 |
| 153 | 153 | 0.646 |
| 154 | 154 | 0.381 |
| 155 | 155 | 0.56 |
| 156 | 156 | 0.991 |
| 157 | 157 | 0.433 |
| 158 | 158 | 0.142 |
| 159 | 159 | 0.531 |
| 16 | 16 | 0.0556 |
| 160 | 160 | 0.0248 |
| 161 | 161 | 0.672 |
| 162 | 162 | 0.29 |
| 163 | 163 | 0.814 |
| 164 | 164 | 0.539 |
| 165 | 165 | 0.929 |
| 166 | 166 | 0.723 |
| 167 | 167 | 0.396 |
| 168 | 168 | 0.971 |
| 169 | 169 | 0.0399 |
| 17 | 17 | 0.133 |
| 18 | 18 | 0.0843 |
| 19 | 19 | 0.0448 |
| 2 | 2 | 0.315 |
| 20 | 20 | 0.409 |
| 21 | 21 | 0.122 |
| 22 | 22 | 0.0793 |
| 23 | 23 | 0.127 |
| 24 | 24 | 0.192 |
| 25 | 25 | 0.904 |
| 26 | 26 | 0.0527 |
| 27 | 27 | 0.154 |
| 28 | 28 | 0.287 |
| 29 | 29 | 0.587 |
| 3 | 3 | 0.252 |
| 30 | 30 | 0.305 |
| 31 | 31 | 0.298 |
| 32 | 32 | 1.34589e-6 |
| 33 | 33 | 0.311 |
| 34 | 34 | 0.231 |
| 35 | 35 | 0.6 |
| 36 | 36 | 0.642 |
| 37 | 37 | 0.185 |
| 38 | 38 | 0.319 |
| 39 | 39 | 0.217 |
| 4 | 4 | 0.474 |
| 40 | 40 | 0.0569 |
| 41 | 41 | 0.5 |
| 42 | 42 | 0.54 |
| 43 | 43 | 0.135 |
| 44 | 44 | 0.415 |
| 45 | 45 | 0.403 |
| 46 | 46 | 0.0772 |
| 47 | 47 | 0.255 |
| 48 | 48 | 0.275 |
| 49 | 49 | 0.141 |
| 5 | 5 | 0.713 |
| 50 | 50 | 0.42 |
| 51 | 51 | 0.358 |
| 52 | 52 | 0.258 |
| 53 | 53 | 0.875 |
| 54 | 54 | 0.324 |
| 55 | 55 | 0.246 |
| 56 | 56 | 0.237 |
| 57 | 57 | 0.294 |
| 58 | 58 | 0.865 |
| 59 | 59 | 0.0293 |
| 6 | 6 | 0.982 |
| 60 | 60 | 0.264 |
| 61 | 61 | 0.505 |
| 62 | 62 | 0.631 |
| 63 | 63 | 0.162 |
| 64 | 64 | 0.167 |
| 65 | 65 | 0.0654 |
| 66 | 66 | 0.775 |
| 67 | 67 | 0.806 |
| 68 | 68 | 0.0349 |
| 69 | 69 | 0.0743 |
| 7 | 7 | 0.855 |
| 70 | 70 | 0.0233 |
| 71 | 71 | 0.0693 |
| 72 | 72 | 0.708 |
| 73 | 73 | 0.0804 |
| 74 | 74 | 0.948 |
| 75 | 75 | 0.418 |
| 76 | 76 | 0.758 |
| 77 | 77 | 0.0329 |
| 78 | 78 | 0.843 |
| 79 | 79 | 0.117 |
| 8 | 8 | 0.0172 |
| 80 | 80 | 0.688 |
| 81 | 81 | 0.315 |
| 82 | 82 | 0.169 |
| 83 | 83 | 0.3 |
| 84 | 84 | 0.391 |
| 85 | 85 | 0.057 |
| 86 | 86 | 0.872 |
| 87 | 87 | 0.289 |
| 88 | 88 | 0.266 |
| 89 | 89 | 0.0346 |
| 9 | 9 | 0.258 |
| 90 | 90 | 0.402 |
| 91 | 91 | 0.136 |
| 92 | 92 | 0.0461 |
| 93 | 93 | 0.559 |
| 94 | 94 | 0.164 |
| 95 | 95 | 0.397 |
| 96 | 96 | 0.443 |
| 97 | 97 | 0.517 |
| 98 | 98 | 0.117 |
| 99 | 99 | 0.00371 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11329
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000184 human smooth muscle cell of trachea sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
