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{{f5samples
{{f5samples
|DRA_sample_Accession=sRNA-Seq@SAMD00013683!CAGE@SAMD00005397
|DRA_sample_Accession=CAGE@SAMD00005397
|accession_numbers=CAGE;DRX008170;DRR009042;DRZ000467;DRZ001852!sRNA-Seq;DRX012360;DRR013808;DRZ003009;
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013683
|accession_numbers=CAGE;DRX008170;DRR009042;DRZ000467;DRZ001852;DRZ011817;DRZ013202
|accession_numbers_RNASeq=sRNA-Seq;DRX012360;DRR013808;DRZ003009
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
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|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.77!594.26!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.44!275.50!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!255.58!POU2AF1;;chrX:106960180..106960197,-!p2@TSC22D3!2.34!783.81!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!2.33!566.37!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!2.32!463.34!BACH2;;chrX:106960249..106960260,-!p5@TSC22D3!2.29!299.98!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.21!162.23!SPIB;;chr2:100759037..100759058,-!p2@AFF3!2.18!150.27!AFF3;;chr6:91006575..91006602,-!p2@BACH2!2.17!211.75!BACH2;;chr6:391743..391759,+!p1@IRF4!2.09!121.81!IRF4;;chr9:37034186..37034216,-!p2@PAX5!2.05!111.57!PAX5;;chr17:38020392..38020477,-!p1@IKZF3!2.02!104.74!IKZF3;;chr3:71355163..71355209,-!p5@FOXP1!1.98!129.21!FOXP1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1413.36!FOSB;;chr2:231090433..231090469,+!p1@SP140!1.91!80.26!SP140;;chr11:47400078..47400106,-!p1@SPI1!1.91!79.69!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!1.90!384.79!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.43!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.82!64.89!SP140;;chr7:50344289..50344323,+!p1@IKZF1!1.81!63.75!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.80!184.43!BCL11A;;chr19:36391434..36391450,-!p1@NFKBID!1.74!102.46!NFKBID;;chr7:50343634..50343717,+!p2@IKZF1!1.73!52.37!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.71!371.13!MEF2C;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.09!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.70!1246.58!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.70!60.91!ZBTB10;;chr2:100758991..100759009,-!p3@AFF3!1.70!48.95!AFF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5415.49!FOS;;chr14:64971288..64971316,-!p2@ZBTB25!1.69!141.16!ZBTB25;;chr20:50159198..50159299,-!p1@NFATC2!1.69!68.31!NFATC2;;chr14:69262947..69262986,-!p3@ZFP36L1!1.66!53.51!ZFP36L1;;chr9:37034258..37034270,-!p3@PAX5!1.66!44.97!PAX5;;chr7:50344251..50344288,+!p3@IKZF1!1.65!43.83!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.65!43.83!BCL11A;;chr20:56195474..56195506,-!p1@ZBP1!1.63!41.55!ZBP1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.09!ZBTB10;;chr5:158526756..158526797,-!p3@EBF1!1.61!39.28!EBF1;;chr19:16435625..16435682,+!p1@KLF2!1.59!1160.63!KLF2;;chr3:32023232..32023273,+!p1@ZNF860!1.57!50.66!ZNF860;;chr2:157189617..157189667,-!p4@NR4A2!1.57!36.43!NR4A2;;chr17:38020557..38020572,-!p4@IKZF3!1.57!36.43!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.56!64.89!RUNX3;;chr17:38497662..38497713,+!p4@RARA!1.55!39.84!RARA;;chr2:61108695..61108753,+!p1@REL!1.53!216.30!REL;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.98!SATB1;;chr3:71409904..71409927,-!p46@FOXP1!1.52!31.88!FOXP1;;chr8:81397876..81397898,+!p5@ZBTB10!1.51!36.43!ZBTB10;;chr5:88120151..88120177,-!p6@MEF2C!1.51!31.31!MEF2C;;chr3:18487057..18487105,-!p4@SATB1!1.50!30.74!SATB1;;chr6:91006503..91006517,-!p3@BACH2!1.49!29.60!BACH2;;chr5:131826457..131826514,-!p1@IRF1!1.48!1091.18!IRF1;;chr8:123793988..123794016,+!p1@ZHX2!1.46!48.38!ZHX2;;chr5:142782823..142782854,-!p3@NR3C1!1.46!39.28!NR3C1;;chr3:71631151..71631194,-!p15@FOXP1!1.45!30.74!FOXP1;;chr1:59249707..59249727,-!p1@JUN!1.44!1068.41!JUN;;chr10:3827371..3827386,-!p2@KLF6!1.42!204.92!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.42!68.31!POU2F2;;chr9:102584262..102584276,+!p1@NR4A3!1.42!55.21!NR4A3;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.84!CASZ1;;chr2:60778035..60778060,-!p4@BCL11A!1.40!28.46!BCL11A;;chr9:37034469..37034474,-!p1@PAX5!1.39!23.34!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.38!22.77!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.37!449.68!NFKB1;;chr13:41593425..41593480,-!p1@ELF1!1.37!137.75!ELF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!56.92!RFX3;;chr2:208031542..208031595,-!p2@KLF7!1.36!151.41!KLF7;;chr14:69262916..69262929,-!p11@ZFP36L1!1.35!21.63!ZFP36L1;;chrX:101186981..101187030,-!p1@ZMAT1!1.34!66.03!ZMAT1;;chr19:12721790..12721810,+!p2@ZNF791!1.34!56.35!ZNF791;;chr17:38020516..38020544,-!p5@IKZF3!1.34!21.06!IKZF3;;chr8:86089531..86089544,+!p7@E2F5!1.33!20.49!E2F5;;chr10:94449703..94449718,+!p1@HHEX!1.32!75.71!HHEX;;chr8:42698292..42698321,-!p8@THAP1!1.32!19.92!THAP1;;chr6:157098579..157098634,+!p4@ARID1B!1.30!42.12!ARID1B;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.86!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.29!89.37!BCL11A;;chr7:64126535..64126559,+!p2@ZNF107!1.29!38.71!ZNF107;;chr18:53254566..53254567,-!p8@TCF4!1.28!29.60!TCF4;;chr6:144385698..144385742,-!p2@PLAGL1!1.28!21.63!PLAGL1;;chr17:56565257..56565283,-!p2@HSF5!1.28!18.21!HSF5;;chr19:54041645..54041661,+!p5@ZNF331!1.28!18.21!ZNF331;;chr14:35873947..35873965,-!p1@NFKBIA!1.27!1092.89!NFKBIA;;chr7:50348268..50348366,+!p4@IKZF1!1.27!17.65!IKZF1;;chr8:102218439..102218455,-!p3@ZNF706!1.26!17.08!ZNF706;;chr1:14075903..14075940,+!p1@PRDM2!1.25!349.50!PRDM2;;chr12:72056800..72056834,+!p1@THAP2!1.24!22.20!THAP2;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.51!EBF1;;chr19:12075844..12075880,+!p3@ZNF763!1.23!27.32!ZNF763;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.20!NFKBIZ;;chr9:37034280..37034297,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051
|ffid_belonging_in_development=CL:0000134,CL:0000051
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11544-120B5
|id=FF:11544-120B5
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12343
|library_id=CNhs12343!SRhi10066.TAGCTT
|library_id_phase_based=2:CNhs12343
|library_id_phase_based=2:CNhs12343
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11544
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.TAGCTT.11544
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11544
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.TAGCTT.11544
|name=CD19+ B Cells, donor1
|name=CD19+ B Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=ATF4:3.44920805049;CREB1:2.67216557188;POU2F1..3:2.66647883488;FOX{D1,D2}:2.5353410156;RFX2..5_RFXANK_RFXAP:2.53373921948;AIRE:2.49741549328;NFKB1_REL_RELA:2.48337466322;FOX{I1,J2}:2.43205248445;FOXN1:2.32054564226;ATF5_CREB3:2.27287129408;DMAP1_NCOR{1,2}_SMARC:2.170499993;FOXP1:2.16279159748;ZBTB16:2.06314605984;BPTF:1.96477955064;POU5F1:1.93711075456;HIF1A:1.86968213514;FOXO1,3,4:1.86902894451;PAX3,7:1.85029514787;FOX{F1,F2,J1}:1.81766572817;PAX2:1.77893383455;FOXA2:1.6889767258;SPI1:1.62426440017;NKX6-1,2:1.4879339864;PBX1:1.47515875065;ELF1,2,4:1.46950296924;HMX1:1.46580764745;RFX1:1.32521271415;PITX1..3:1.31192953062;IRF1,2:1.25710460704;ATF2:1.25562671797;SPIB:1.21263334127;HBP1_HMGB_SSRP1_UBTF:1.2023055061;PAX6:1.19778321817;ETS1,2:1.19233035485;RUNX1..3:1.17985655586;CDX1,2,4:1.16951145689;TLX2:1.10824778464;TOPORS:1.01396986538;FOXL1:0.995725843826;TGIF1:0.92434592897;BREu{core}:0.923505999083;JUN:0.917657126722;NANOG{mouse}:0.891862308428;STAT5{A,B}:0.761354720691;IKZF2:0.732131160487;ALX1:0.653213413031;EGR1..3:0.611388551789;NKX2-1,4:0.601630723456;EVI1:0.591059989772;PAX4:0.568835914293;MEF2{A,B,C,D}:0.566346166964;NFIL3:0.565403850936;SREBF1,2:0.530312760849;LMO2:0.524730823292;ZEB1:0.520107110286;ATF6:0.50278243324;FOXQ1:0.47755219321;FOXP3:0.458202478862;ESR1:0.412908662544;OCT4_SOX2{dimer}:0.384748058873;MYB:0.381085356862;CRX:0.322769559014;MYOD1:0.301241166141;IRF7:0.245967688522;SNAI1..3:0.245651518105;AHR_ARNT_ARNT2:0.234433754608;POU1F1:0.180714229688;SOX5:0.173691657862;bHLH_family:0.162608942032;LEF1_TCF7_TCF7L1,2:0.139840888866;MAFB:0.126653711239;NANOG:0.114089157881;TEF:0.0895451124203;HMGA1,2:0.086274655357;RXRA_VDR{dimer}:0.0822763252335;GATA6:0.0542272702299;ELK1,4_GABP{A,B1}:0.0474352808978;RXR{A,B,G}:0.0443756121818;DBP:0.0283461601582;NKX3-1:0.0193792310064;GLI1..3:-0.00660350499444;ZFP161:-0.00694950904568;HOX{A6,A7,B6,B7}:-0.0200563646482;SOX{8,9,10}:-0.020954227231;SMAD1..7,9:-0.0229183318381;PDX1:-0.0901377354881;ZNF384:-0.0903585726486;NKX2-2,8:-0.117582513056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.122045213498;NHLH1,2:-0.132208082719;HOXA9_MEIS1:-0.175810576808;CUX2:-0.179947400854;EBF1:-0.205006126533;TBX4,5:-0.215025892048;PPARG:-0.219857199833;FOSL2:-0.236808441687;NR5A1,2:-0.238706039107;POU6F1:-0.242383023021;EP300:-0.270550596569;NR6A1:-0.299356403554;HNF4A_NR2F1,2:-0.307861627856;CDC5L:-0.319215235903;FOS_FOS{B,L1}_JUN{B,D}:-0.330289250605;E2F1..5:-0.340184497363;SRF:-0.344268108012;HES1:-0.346381199073;NFATC1..3:-0.350554775437;NRF1:-0.363764989218;CEBPA,B_DDIT3:-0.389612435976;RREB1:-0.393927841968;ALX4:-0.405938891931;MED-1{core}:-0.432908879421;PRRX1,2:-0.43339584461;ONECUT1,2:-0.479331825852;BACH2:-0.482316106312;MYFfamily:-0.488358558772;SOX2:-0.50770381351;NFIX:-0.549839114613;FOXD3:-0.59968180633;NFY{A,B,C}:-0.64239692341;PATZ1:-0.650601120307;HNF1A:-0.672081104382;RORA:-0.674624150051;MTE{core}:-0.684350113133;PRDM1:-0.713575974659;ARID5B:-0.737836917261;TFAP2{A,C}:-0.742820536352;NFE2L1:-0.744324851637;ZNF143:-0.745000766885;TAL1_TCF{3,4,12}:-0.783294339887;TFAP4:-0.793230258734;HOX{A4,D4}:-0.80396745364;SPZ1:-0.820392387065;NFE2:-0.825281252153;HAND1,2:-0.848919479329;RBPJ:-0.898611619594;YY1:-0.916976779227;HOX{A5,B5}:-0.917138150185;TFAP2B:-0.926858367676;STAT1,3:-0.927802668723;HLF:-0.933271714151;TFDP1:-0.936794900332;MZF1:-0.969897817184;T:-0.970684069497;NKX2-3_NKX2-5:-0.989481065386;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.990079360742;UFEwm:-1.01904018916;GATA4:-1.02435077287;REST:-1.03318501637;SOX17:-1.06311964266;MTF1:-1.06466864034;VSX1,2:-1.08620396589;XCPE1{core}:-1.1152248397;TBP:-1.13054509026;SP1:-1.13636995204;XBP1:-1.15259599137;HIC1:-1.16535408041;STAT2,4,6:-1.16674445196;TFCP2:-1.17669696573;MAZ:-1.1887840703;AR:-1.21248413064;POU3F1..4:-1.21712637406;MYBL2:-1.23478774568;TP53:-1.31122689699;PAX8:-1.32397451295;NFE2L2:-1.36354858337;HSF1,2:-1.3718362023;GFI1B:-1.40371898738;GFI1:-1.41615293106;LHX3,4:-1.41850758001;ADNP_IRX_SIX_ZHX:-1.43051835353;ZNF148:-1.45276740561;EN1,2:-1.4718666707;ZNF238:-1.50197433992;PAX5:-1.58409886669;NKX3-2:-1.62587918465;ZIC1..3:-1.65436068424;FOXM1:-1.67528292687;ZNF423:-1.67749012145;GZF1:-1.70926326279;TEAD1:-1.81397980531;ESRRA:-1.83386412073;NR1H4:-1.84479425666;GTF2A1,2:-1.87587696179;ZBTB6:-1.91792640585;GTF2I:-1.93413822457;GCM1,2:-2.15284140371;IKZF1:-2.15932113955;KLF4:-2.25168236696;TLX1..3_NFIC{dimer}:-2.49364280052;PAX1,9:-2.72760244819;NR3C1:-2.93827911982
|top_motifs=ATF4:3.44920805049;CREB1:2.67216557188;POU2F1..3:2.66647883488;FOX{D1,D2}:2.5353410156;RFX2..5_RFXANK_RFXAP:2.53373921948;AIRE:2.49741549328;NFKB1_REL_RELA:2.48337466322;FOX{I1,J2}:2.43205248445;FOXN1:2.32054564226;ATF5_CREB3:2.27287129408;DMAP1_NCOR{1,2}_SMARC:2.170499993;FOXP1:2.16279159748;ZBTB16:2.06314605984;BPTF:1.96477955064;POU5F1:1.93711075456;HIF1A:1.86968213514;FOXO1,3,4:1.86902894451;PAX3,7:1.85029514787;FOX{F1,F2,J1}:1.81766572817;PAX2:1.77893383455;FOXA2:1.6889767258;SPI1:1.62426440017;NKX6-1,2:1.4879339864;PBX1:1.47515875065;ELF1,2,4:1.46950296924;HMX1:1.46580764745;RFX1:1.32521271415;PITX1..3:1.31192953062;IRF1,2:1.25710460704;ATF2:1.25562671797;SPIB:1.21263334127;HBP1_HMGB_SSRP1_UBTF:1.2023055061;PAX6:1.19778321817;ETS1,2:1.19233035485;RUNX1..3:1.17985655586;CDX1,2,4:1.16951145689;TLX2:1.10824778464;TOPORS:1.01396986538;FOXL1:0.995725843826;TGIF1:0.92434592897;BREu{core}:0.923505999083;JUN:0.917657126722;NANOG{mouse}:0.891862308428;STAT5{A,B}:0.761354720691;IKZF2:0.732131160487;ALX1:0.653213413031;EGR1..3:0.611388551789;NKX2-1,4:0.601630723456;EVI1:0.591059989772;PAX4:0.568835914293;MEF2{A,B,C,D}:0.566346166964;NFIL3:0.565403850936;SREBF1,2:0.530312760849;LMO2:0.524730823292;ZEB1:0.520107110286;ATF6:0.50278243324;FOXQ1:0.47755219321;FOXP3:0.458202478862;ESR1:0.412908662544;OCT4_SOX2{dimer}:0.384748058873;MYB:0.381085356862;CRX:0.322769559014;MYOD1:0.301241166141;IRF7:0.245967688522;SNAI1..3:0.245651518105;AHR_ARNT_ARNT2:0.234433754608;POU1F1:0.180714229688;SOX5:0.173691657862;bHLH_family:0.162608942032;LEF1_TCF7_TCF7L1,2:0.139840888866;MAFB:0.126653711239;NANOG:0.114089157881;TEF:0.0895451124203;HMGA1,2:0.086274655357;RXRA_VDR{dimer}:0.0822763252335;GATA6:0.0542272702299;ELK1,4_GABP{A,B1}:0.0474352808978;RXR{A,B,G}:0.0443756121818;DBP:0.0283461601582;NKX3-1:0.0193792310064;GLI1..3:-0.00660350499444;ZFP161:-0.00694950904568;HOX{A6,A7,B6,B7}:-0.0200563646482;SOX{8,9,10}:-0.020954227231;SMAD1..7,9:-0.0229183318381;PDX1:-0.0901377354881;ZNF384:-0.0903585726486;NKX2-2,8:-0.117582513056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.122045213498;NHLH1,2:-0.132208082719;HOXA9_MEIS1:-0.175810576808;CUX2:-0.179947400854;EBF1:-0.205006126533;TBX4,5:-0.215025892048;PPARG:-0.219857199833;FOSL2:-0.236808441687;NR5A1,2:-0.238706039107;POU6F1:-0.242383023021;EP300:-0.270550596569;NR6A1:-0.299356403554;HNF4A_NR2F1,2:-0.307861627856;CDC5L:-0.319215235903;FOS_FOS{B,L1}_JUN{B,D}:-0.330289250605;E2F1..5:-0.340184497363;SRF:-0.344268108012;HES1:-0.346381199073;NFATC1..3:-0.350554775437;NRF1:-0.363764989218;CEBPA,B_DDIT3:-0.389612435976;RREB1:-0.393927841968;ALX4:-0.405938891931;MED-1{core}:-0.432908879421;PRRX1,2:-0.43339584461;ONECUT1,2:-0.479331825852;BACH2:-0.482316106312;MYFfamily:-0.488358558772;SOX2:-0.50770381351;NFIX:-0.549839114613;FOXD3:-0.59968180633;NFY{A,B,C}:-0.64239692341;PATZ1:-0.650601120307;HNF1A:-0.672081104382;RORA:-0.674624150051;MTE{core}:-0.684350113133;PRDM1:-0.713575974659;ARID5B:-0.737836917261;TFAP2{A,C}:-0.742820536352;NFE2L1:-0.744324851637;ZNF143:-0.745000766885;TAL1_TCF{3,4,12}:-0.783294339887;TFAP4:-0.793230258734;HOX{A4,D4}:-0.80396745364;SPZ1:-0.820392387065;NFE2:-0.825281252153;HAND1,2:-0.848919479329;RBPJ:-0.898611619594;YY1:-0.916976779227;HOX{A5,B5}:-0.917138150185;TFAP2B:-0.926858367676;STAT1,3:-0.927802668723;HLF:-0.933271714151;TFDP1:-0.936794900332;MZF1:-0.969897817184;T:-0.970684069497;NKX2-3_NKX2-5:-0.989481065386;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.990079360742;UFEwm:-1.01904018916;GATA4:-1.02435077287;REST:-1.03318501637;SOX17:-1.06311964266;MTF1:-1.06466864034;VSX1,2:-1.08620396589;XCPE1{core}:-1.1152248397;TBP:-1.13054509026;SP1:-1.13636995204;XBP1:-1.15259599137;HIC1:-1.16535408041;STAT2,4,6:-1.16674445196;TFCP2:-1.17669696573;MAZ:-1.1887840703;AR:-1.21248413064;POU3F1..4:-1.21712637406;MYBL2:-1.23478774568;TP53:-1.31122689699;PAX8:-1.32397451295;NFE2L2:-1.36354858337;HSF1,2:-1.3718362023;GFI1B:-1.40371898738;GFI1:-1.41615293106;LHX3,4:-1.41850758001;ADNP_IRX_SIX_ZHX:-1.43051835353;ZNF148:-1.45276740561;EN1,2:-1.4718666707;ZNF238:-1.50197433992;PAX5:-1.58409886669;NKX3-2:-1.62587918465;ZIC1..3:-1.65436068424;FOXM1:-1.67528292687;ZNF423:-1.67749012145;GZF1:-1.70926326279;TEAD1:-1.81397980531;ESRRA:-1.83386412073;NR1H4:-1.84479425666;GTF2A1,2:-1.87587696179;ZBTB6:-1.91792640585;GTF2I:-1.93413822457;GCM1,2:-2.15284140371;IKZF1:-2.15932113955;KLF4:-2.25168236696;TLX1..3_NFIC{dimer}:-2.49364280052;PAX1,9:-2.72760244819;NR3C1:-2.93827911982
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11544-120B5;search_select_hide=table117:FF:11544-120B5
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:CD19+ B Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12343,SRhi10066.TAGCTT
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number3H100-500-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005397
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12343 CAGE DRX008170 DRR009042
Accession ID Hg19

Library idBAMCTSS
CNhs12343 DRZ000467 DRZ001852
Accession ID Hg38

Library idBAMCTSS
CNhs12343 DRZ011817 DRZ013202
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013683
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.TAGCTT sRNA-Seq DRX012360 DRR013808
Accession ID Hg19

Library idBAMCTSS
SRhi10066.TAGCTT DRZ003009


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.515
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.953
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.493
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.515
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.624
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.56
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil1.199
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.19
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.924
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.196
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.515
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.745
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.33
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.207
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.172
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.134
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.562
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.515
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.138
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.731
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.33
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0159
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.745
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.196
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.809
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.551
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.61
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.433
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.196
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.894
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.745
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.515
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12343

Jaspar motifP-value
MA0002.20.0659
MA0003.10.574
MA0004.10.343
MA0006.10.113
MA0007.10.505
MA0009.10.294
MA0014.10.899
MA0017.10.369
MA0018.25.68517e-11
MA0019.10.718
MA0024.10.627
MA0025.10.486
MA0027.10.751
MA0028.10.124
MA0029.10.407
MA0030.10.0016
MA0031.10.00181
MA0035.20.812
MA0038.10.0225
MA0039.20.582
MA0040.10.496
MA0041.10.174
MA0042.10.781
MA0043.16.55992e-6
MA0046.10.215
MA0047.20.268
MA0048.10.933
MA0050.18.63256e-9
MA0051.10.0023
MA0052.10.064
MA0055.10.495
MA0057.10.213
MA0058.10.248
MA0059.10.775
MA0060.10.0137
MA0061.11.97491e-18
MA0062.26.7264e-7
MA0065.20.912
MA0066.10.8
MA0067.18.44085e-4
MA0068.10.162
MA0069.10.557
MA0070.10.492
MA0071.10.661
MA0072.10.693
MA0073.10.601
MA0074.10.773
MA0076.10.031
MA0077.10.315
MA0078.10.72
MA0079.20.701
MA0080.28.98004e-11
MA0081.16.22175e-5
MA0083.10.422
MA0084.10.446
MA0087.10.298
MA0088.10.335
MA0090.18.77677e-6
MA0091.10.739
MA0092.10.632
MA0093.10.448
MA0099.22.4602e-4
MA0100.10.514
MA0101.12.17999e-15
MA0102.20.067
MA0103.10.152
MA0104.20.0886
MA0105.18.9895e-12
MA0106.10.199
MA0107.17.70744e-15
MA0108.20.00107
MA0111.10.49
MA0112.20.582
MA0113.10.181
MA0114.10.439
MA0115.10.684
MA0116.10.00788
MA0117.10.112
MA0119.10.198
MA0122.10.914
MA0124.10.695
MA0125.10.36
MA0131.10.0143
MA0135.10.031
MA0136.12.05428e-12
MA0137.20.0232
MA0138.20.154
MA0139.10.673
MA0140.10.829
MA0141.10.0972
MA0142.10.782
MA0143.10.368
MA0144.10.0546
MA0145.10.0375
MA0146.10.653
MA0147.10.136
MA0148.10.737
MA0149.10.346
MA0150.10.982
MA0152.10.0649
MA0153.10.0286
MA0154.10.0314
MA0155.10.228
MA0156.14.9152e-6
MA0157.10.056
MA0159.10.369
MA0160.10.797
MA0162.10.228
MA0163.10.00431
MA0164.10.442
MA0258.10.867
MA0259.10.296



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12343

Novel motifP-value
10.523
100.0162
1000.408
1010.542
1020.782
1030.443
1040.666
1050.865
1060.163
1070.07
1080.261
1090.974
110.733
1100.736
1110.219
1120.712
1130.0607
1140.875
1150.917
1160.162
1177.95649e-4
1180.238
1190.7
120.695
1200.433
1210.269
1220.727
1235.22776e-4
1240.832
1250.438
1260.443
1270.509
1280.344
1290.135
130.443
1300.0515
1310.41
1320.0832
1330.166
1340.912
1350.0192
1360.355
1370.00732
1380.582
1390.405
140.564
1400.31
1410.448
1420.972
1430.54
1440.619
1450.761
1460.646
1470.0461
1480.24
1490.873
150.681
1500.772
1510.877
1520.803
1530.467
1540.391
1550.0198
1560.782
1570.423
1580.00503
1590.463
160.321
1600.448
1610.854
1620.545
1630.354
1640.0813
1650.906
1660.226
1670.121
1680.44
1690.303
170.66
180.805
190.0923
20.0817
200.102
210.965
220.311
230.833
240.454
250.116
260.659
270.457
280.491
290.0864
30.444
300.0605
310.675
320.0183
330.513
340.389
350.263
360.0508
370.244
380.987
390.449
40.862
400.504
410.186
420.417
430.525
440.778
450.191
460.701
470.615
480.906
490.253
50.89
500.668
510.922
520.857
530.458
540.825
550.589
560.715
570.8
580.118
590.369
60.981
600.523
610.0755
620.204
630.825
640.917
650.678
660.332
670.986
680.928
690.377
70.559
700.116
710.122
720.445
730.74
740.949
750.0103
760.0065
770.00608
780.869
790.666
80.525
800.601
810.335
820.397
830.841
840.0552
850.864
860.0593
870.61
880.713
890.00336
90.594
900.891
910.287
920.878
930.712
940.302
950.11
960.63
970.508
980.242
991.49582e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12343


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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