FF:11592-120G8: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Smooth Muscle Cells - Bronchial, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12348
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC3405
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004669

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12348		CAGE		DRX008479		DRR009351

Accession ID Hg19

Library id		BAM		CTSS
CNhs12348		DRZ000776		DRZ002161

Accession ID Hg38

Library id		BAM		CTSS
CNhs12348		DRZ012126		DRZ013511

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.416
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.359
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0106
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0413
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.22
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.359
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.552
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.269
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.155
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.319
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.155
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.155
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.155
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.359
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.497
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12348

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0919
MA0003.1	MA0003.1	0.425
MA0004.1	MA0004.1	0.331
MA0006.1	MA0006.1	0.676
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.0757
MA0014.1	MA0014.1	0.485
MA0017.1	MA0017.1	0.469
MA0018.2	MA0018.2	3.14925e-6
MA0019.1	MA0019.1	0.565
MA0024.1	MA0024.1	3.0315e-6
MA0025.1	MA0025.1	3.19086e-4
MA0027.1	MA0027.1	0.811
MA0028.1	MA0028.1	2.5951e-5
MA0029.1	MA0029.1	0.613
MA0030.1	MA0030.1	0.56
MA0031.1	MA0031.1	0.875
MA0035.2	MA0035.2	0.225
MA0038.1	MA0038.1	0.0191
MA0039.2	MA0039.2	0.00366
MA0040.1	MA0040.1	0.691
MA0041.1	MA0041.1	0.376
MA0042.1	MA0042.1	0.574
MA0043.1	MA0043.1	6.14439e-4
MA0046.1	MA0046.1	0.814
MA0047.2	MA0047.2	0.848
MA0048.1	MA0048.1	0.288
MA0050.1	MA0050.1	0.0837
MA0051.1	MA0051.1	0.284
MA0052.1	MA0052.1	0.147
MA0055.1	MA0055.1	0.193
MA0057.1	MA0057.1	0.802
MA0058.1	MA0058.1	0.189
MA0059.1	MA0059.1	0.8
MA0060.1	MA0060.1	2.11951e-9
MA0061.1	MA0061.1	0.209
MA0062.2	MA0062.2	4.84364e-14
MA0065.2	MA0065.2	0.584
MA0066.1	MA0066.1	0.804
MA0067.1	MA0067.1	0.0337
MA0068.1	MA0068.1	0.431
MA0069.1	MA0069.1	0.294
MA0070.1	MA0070.1	0.159
MA0071.1	MA0071.1	0.276
MA0072.1	MA0072.1	0.869
MA0073.1	MA0073.1	0.317
MA0074.1	MA0074.1	0.308
MA0076.1	MA0076.1	1.24933e-6
MA0077.1	MA0077.1	0.154
MA0078.1	MA0078.1	0.81
MA0079.2	MA0079.2	0.38
MA0080.2	MA0080.2	2.9034e-9
MA0081.1	MA0081.1	0.00107
MA0083.1	MA0083.1	0.0609
MA0084.1	MA0084.1	0.96
MA0087.1	MA0087.1	0.845
MA0088.1	MA0088.1	0.146
MA0090.1	MA0090.1	0.0284
MA0091.1	MA0091.1	0.00303
MA0092.1	MA0092.1	0.384
MA0093.1	MA0093.1	0.317
MA0099.2	MA0099.2	0.00887
MA0100.1	MA0100.1	0.735
MA0101.1	MA0101.1	0.0151
MA0102.2	MA0102.2	0.468
MA0103.1	MA0103.1	0.00458
MA0104.2	MA0104.2	0.996
MA0105.1	MA0105.1	0.63
MA0106.1	MA0106.1	0.68
MA0107.1	MA0107.1	0.0212
MA0108.2	MA0108.2	0.511
MA0111.1	MA0111.1	0.806
MA0112.2	MA0112.2	0.316
MA0113.1	MA0113.1	0.0208
MA0114.1	MA0114.1	0.61
MA0115.1	MA0115.1	0.625
MA0116.1	MA0116.1	0.722
MA0117.1	MA0117.1	0.142
MA0119.1	MA0119.1	0.0525
MA0122.1	MA0122.1	0.996
MA0124.1	MA0124.1	0.263
MA0125.1	MA0125.1	0.533
MA0131.1	MA0131.1	0.219
MA0135.1	MA0135.1	0.467
MA0136.1	MA0136.1	3.55384e-13
MA0137.2	MA0137.2	0.436
MA0138.2	MA0138.2	0.623
MA0139.1	MA0139.1	0.996
MA0140.1	MA0140.1	0.535
MA0141.1	MA0141.1	0.768
MA0142.1	MA0142.1	0.818
MA0143.1	MA0143.1	0.0586
MA0144.1	MA0144.1	0.0944
MA0145.1	MA0145.1	0.093
MA0146.1	MA0146.1	0.52
MA0147.1	MA0147.1	0.696
MA0148.1	MA0148.1	0.951
MA0149.1	MA0149.1	0.261
MA0150.1	MA0150.1	0.0399
MA0152.1	MA0152.1	0.00605
MA0153.1	MA0153.1	0.112
MA0154.1	MA0154.1	0.829
MA0155.1	MA0155.1	0.561
MA0156.1	MA0156.1	2.75907e-12
MA0157.1	MA0157.1	0.918
MA0159.1	MA0159.1	0.675
MA0160.1	MA0160.1	0.793
MA0162.1	MA0162.1	0.16
MA0163.1	MA0163.1	0.277
MA0164.1	MA0164.1	0.983
MA0258.1	MA0258.1	0.67
MA0259.1	MA0259.1	0.562

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12348

Novel motif	Logo	P-value
1	1	0.646
10	10	0.566
100	100	0.641
101	101	0.803
102	102	0.0402
103	103	0.108
104	104	0.475
105	105	0.936
106	106	0.174
107	107	0.00636
108	108	0.101
109	109	0.572
11	11	0.828
110	110	0.268
111	111	0.724
112	112	0.941
113	113	0.417
114	114	0.693
115	115	0.148
116	116	0.0618
117	117	0.479
118	118	0.402
119	119	0.423
12	12	0.457
120	120	0.11
121	121	0.268
122	122	0.145
123	123	1.08628e-4
124	124	0.856
125	125	0.218
126	126	0.548
127	127	0.847
128	128	0.0687
129	129	0.368
13	13	0.178
130	130	0.707
131	131	0.413
132	132	0.804
133	133	0.148
134	134	0.682
135	135	0.945
136	136	0.944
137	137	0.0318
138	138	0.932
139	139	0.59
14	14	0.229
140	140	0.159
141	141	0.305
142	142	0.856
143	143	0.988
144	144	0.335
145	145	0.805
146	146	0.691
147	147	0.231
148	148	0.541
149	149	0.0754
15	15	0.865
150	150	0.578
151	151	0.876
152	152	0.644
153	153	0.219
154	154	0.279
155	155	0.033
156	156	0.221
157	157	0.0954
158	158	0.191
159	159	0.422
16	16	0.0883
160	160	0.498
161	161	0.619
162	162	0.0962
163	163	0.893
164	164	0.204
165	165	0.872
166	166	0.0518
167	167	0.274
168	168	0.809
169	169	0.149
17	17	0.705
18	18	0.0772
19	19	0.00482
2	2	0.286
20	20	0.423
21	21	0.206
22	22	0.136
23	23	0.0233
24	24	0.396
25	25	0.0989
26	26	0.442
27	27	0.666
28	28	0.119
29	29	0.804
3	3	0.962
30	30	0.415
31	31	0.188
32	32	2.46237e-7
33	33	0.597
34	34	0.409
35	35	0.789
36	36	0.0383
37	37	0.756
38	38	0.426
39	39	0.462
4	4	0.116
40	40	0.0235
41	41	0.193
42	42	0.416
43	43	0.406
44	44	0.295
45	45	0.682
46	46	0.429
47	47	0.424
48	48	0.471
49	49	0.795
5	5	0.873
50	50	0.935
51	51	0.614
52	52	0.419
53	53	0.0214
54	54	0.25
55	55	0.252
56	56	0.349
57	57	0.626
58	58	0.222
59	59	0.19
6	6	0.572
60	60	0.785
61	61	0.459
62	62	0.739
63	63	0.861
64	64	0.458
65	65	0.321
66	66	0.52
67	67	0.788
68	68	0.575
69	69	0.407
7	7	0.196
70	70	0.0623
71	71	0.758
72	72	0.428
73	73	0.802
74	74	0.284
75	75	0.267
76	76	0.71
77	77	0.772
78	78	0.257
79	79	0.135
8	8	0.5
80	80	0.321
81	81	0.291
82	82	0.667
83	83	0.274
84	84	0.184
85	85	0.0213
86	86	0.767
87	87	0.15
88	88	0.289
89	89	0.355
9	9	0.222
90	90	0.789
91	91	0.478
92	92	0.0199
93	93	0.579
94	94	0.176
95	95	0.47
96	96	0.741
97	97	0.313
98	98	0.584
99	99	0.00281

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12348

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000179 human bronchial smooth muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000179 (human bronchial smooth muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008371
+|DRA_sample_Accession=CAGE@SAMD00004669
-|accession_numbers=CAGE;DRX008479;DRR009351;DRZ000776;DRZ002161
+|accession_numbers=CAGE;DRX008479;DRR009351;DRZ000776;DRZ002161;DRZ012126;DRZ013511
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.42!262.75!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!60.77!HIF3A;;chr14:61116183..61116208,-!p1@SIX1!1.63!152.35!SIX1;;chr17:46671108..46671147,-!p1@HOXB5!1.57!36.37!HOXB5;;chr16:86544113..86544145,+!p1@FOXF1!1.51!38.51!FOXF1;;chr17:59477233..59477263,+!p1@TBX2!1.50!91.15!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.45!118.54!NR2F1;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.24!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.09!TCF12;;chr17:46675420..46675465,-!p3@HOXB6!1.33!23.54!HOXB6;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.71!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.30!42.79!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.29!49.64!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.28!17.97!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.71!SNAI2;;chr6:1389789..1389821,+!p1@FOXF2!1.19!20.11!FOXF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.25!CREB3L1;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.83!NR2F1;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.55!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.14!14.55!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.66!TWIST1;;chr15:42749722..42749739,-!p2@ZFP106!1.13!22.25!ZFP106;;chr17:46655704..46655718,-!p2@HOXB4!1.11!17.97!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.11!17.55!NFIX;;chr12:115122318..115122331,-!p2@TBX3!1.10!11.55!TBX3;;chr17:46667628..46667642,-!p2@HOXB3!1.08!11.13!HOXB3;;chr17:59529743..59529798,+!p1@TBX4!1.08!11.13!TBX4;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.10!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.05!76.60!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.93!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.38!TWIST2;;chr17:59477275..59477286,+!p3@TBX2!1.05!13.69!TBX2;;chr9:94186101..94186122,-!p1@NFIL3!1.03!137.80!NFIL3;;chr5:92918956..92918969,+!p4@NR2F1!1.03!10.70!NR2F1;;chr17:46667594..46667619,-!p1@HOXB3!1.02!9.41!HOXB3;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.08!PCBP3;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.70!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!1.00!187.44!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!1.00!9.84!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!1.00!8.99!ZBTB16;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.54!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.99!15.41!TBX2;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.70!ZBTB38;;chr15:96874012..96874042,+!p2@NR2F2!0.98!79.17!NR2F2;;chr9:73029219..73029289,-!p2@KLF9!0.97!25.68!KLF9;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.40!EBF1;;chr7:27183263..27183284,-!p2@HOXA5!0.96!8.13!HOXA5;;chr17:59477403..59477414,+!p4@TBX2!0.96!8.13!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!217.39!TSC22D3;;chr11:47279248..47279264,+!p3@NR1H3!0.95!8.99!NR1H3;;chr9:16870710..16870763,-!p1@BNC2!0.94!13.69!BNC2;;chrX:107018969..107019024,-!p6@TSC22D3!0.94!10.70!TSC22D3;;chr17:46675469..46675481,-!p4@HOXB6!0.94!7.70!HOXB6;;chr9:128509663..128509715,+!p1@PBX3!0.93!26.53!PBX3;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.41!BNC2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.41!TWIST2;;chr20:39317868..39317884,-!p1@MAFB!0.90!85.59!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.90!28.67!MAF;;chr3:12329358..12329393,+!p3@PPARG!0.90!17.97!PPARG;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.82!IFI16;;chr9:128510454..128510469,+!p3@PBX3!0.89!8.99!PBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.87!22.25!NR2F1;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.41!NR2F2;;chr5:92919068..92919082,+!p5@NR2F1!0.87!7.70!NR2F1;;chr14:61191018..61191048,-!p1@SIX4!0.86!14.12!SIX4;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.27!RUNX2;;chr20:42543441..42543497,+!p1@TOX2!0.85!29.10!TOX2;;chr9:77112244..77112262,+!p1@RORB!0.85!6.85!RORB;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.99!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!0.84!5.99!TBX5;;chr5:122424955..122424988,+!p2@PRDM6!0.84!5.99!PRDM6;;chr7:27183291..27183324,-!p1@HOXA5!0.84!5.99!HOXA5;;chr2:66662281..66662308,+!p1@MEIS1!0.83!20.97!MEIS1;;chr15:96874927..96874938,+!p8@NR2F2!0.83!12.84!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.56!SOX11;;chr12:115122303..115122314,-!p6@TBX3!0.82!5.56!TBX3;;chr9:73028814..73028895,-!p1@KLF9!0.81!58.63!KLF9;;chr9:94186131..94186174,-!p2@NFIL3!0.81!47.93!NFIL3;;chr3:126076242..126076257,-!p1@KLF15!0.81!6.85!KLF15;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.17!ZNF503;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!58.20!GLIS2;;chr13:41240717..41240735,-!p2@FOXO1!0.80!39.37!FOXO1;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.10!DRAP1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.83!FOXP1;;chr17:46675539..46675551,-!p7@HOXB6!0.79!5.14!HOXB6;;chr12:115121962..115121987,-!p1@TBX3!0.78!45.79!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.82!FOXD1;;chrX:106960180..106960197,-!p2@TSC22D3!0.78!20.97!TSC22D3;;chr19:50432453..50432468,+!p1@ATF5!0.77!303.84!ATF5;;chr3:69788576..69788648,+!p1@MITF!0.77!28.24!MITF;;chr9:94186085..94186096,-!p3@NFIL3!0.77!8.56!NFIL3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.76!554.61!ZFP36L2;;chr17:46670037..4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11592-120G8
 |is_a=EFO:0002091;;FF:0000179
 |is_obsolete=
 |library_id=CNhs12348
-|library_id_phase_based=1:CNhs12348
+|library_id_phase_based=2:CNhs12348
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11592
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11592
 |name=Smooth Muscle Cells - Bronchial, donor2
 |namespace=
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12348,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11592-120G8;search_select_hide=table117:FF:11592-120G8
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FF:11592-120G8: Difference between revisions

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Latest revision as of 18:10, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0