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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004675
|accession_numbers=CAGE;DRX008343;DRR009215;DRZ000640;DRZ002025;DRZ011990;DRZ013375
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.12!129.81!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!1.88!75.17!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!1.82!186.43!MSX1;;chr14:61116183..61116208,-!p1@SIX1!1.74!196.99!SIX1;;chr6:34204921..34204939,+!p3@HMGA1!1.68!1337.54!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.64!187.16!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!1.62!71.43!TBX18;;chr12:66218255..66218304,+!p3@HMGA2!1.57!94.09!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.65!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.39!62.78!OSR1;;chr16:86600426..86600441,+!p1@FOXC2!1.39!56.62!FOXC2;;chr12:66218183..66218209,+!p4@HMGA2!1.37!42.83!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.04!TCF12;;chr5:92918919..92918942,+!p1@NR2F1!1.34!90.79!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!1.31!86.03!FOXD1;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.41!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!1.28!17.89!ARNT2;;chr3:147111231..147111281,+!p3@ZIC1!1.28!17.89!ZIC1;;chr12:66218212..66218244,+!p5@HMGA2!1.23!23.10!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.01!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.04!TWIST1;;chr13:100634031..100634045,+!p1@ZIC2!1.16!13.49!ZIC2;;chr12:96588368..96588394,+!p3@ELK3!1.09!30.22!ELK3;;chr6:1389789..1389821,+!p1@FOXF2!1.08!15.11!FOXF2;;chr3:25469724..25469773,+!p1@RARB!1.07!15.47!RARB;;chr12:85673977..85674015,+!p1@ALX1!1.07!10.71!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!1.06!41.29!FOSL1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.47!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.04!26.84!HIC1;;chr3:147124307..147124336,-!p2@ZIC4!1.02!9.39!ZIC4;;chr1:170632959..170632987,+!p4@PRRX1!1.00!10.05!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.00!9.02!SIX2;;chr5:72744562..72744573,-!p3@FOXD1!0.99!11.07!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.01!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!0.97!13.05!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.96!110.45!HMGA1;;chr5:92918768..92918783,+!p8@NR2F1!0.96!8.07!NR2F1;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.35!FOXD1;;chr12:66218378..66218401,+!p6@HMGA2!0.92!11.66!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.46!NR2F2;;chr17:41623692..41623715,-!p1@ETV4!0.90!31.32!ETV4;;chr12:66218152..66218174,+!p10@HMGA2!0.89!7.33!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.75!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.89!6.67!FOXS1;;chr14:61116168..61116180,-!p2@SIX1!0.87!7.48!SIX1;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.31!TCF12;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.31!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.85!7.99!HMGA2;;chr11:44331576..44331650,-!p1@ALX4!0.85!6.09!ALX4;;chr2:5832508..5832524,+!p1@SOX11!0.85!6.01!SOX11;;chr1:170632477..170632506,+!p6@PRRX1!0.84!5.87!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.83!59.11!TCF19;;chr12:96588279..96588299,+!p4@ELK3!0.83!28.90!ELK3;;chr15:96869255..96869291,+!p6@NR2F2!0.83!11.00!NR2F2;;chr8:49833948..49833973,-!p2@SNAI2!0.82!37.92!SNAI2;;chr15:96873921..96873946,+!p1@NR2F2!0.81!168.09!NR2F2;;chr5:92919100..92919135,+!p3@NR2F1!0.81!6.75!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.80!67.84!MLLT11;;chr3:141087393..141087426,+!p3@ZBTB38!0.80!22.44!ZBTB38;;chr7:14029283..14029311,-!p1@ETV1!0.79!29.92!ETV1;;chr5:92918894..92918912,+!p2@NR2F1!0.79!18.11!NR2F1;;chr15:96869114..96869160,+!p11@NR2F2!0.79!7.33!NR2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.79!6.67!TFAP2C;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.13!ETV4;;chr15:96873861..96873872,+!p9@NR2F2!0.78!11.07!NR2F2;;chr12:66218420..66218439,+!p12@HMGA2!0.78!5.06!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.77!31.90!MYBL2;;chr3:147139053..147139112,+!p5@ZIC1!0.77!4.91!ZIC1;;chr3:25469815..25469866,+!p3@RARB!0.77!4.84!RARB;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.84!ZIC5;;chr9:130954041..130954121,-!p2@CIZ1!0.76!22.44!CIZ1;;chr12:96588219..96588263,+!p2@ELK3!0.75!36.74!ELK3;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.79!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.75!5.13!NR2F1;;chr8:25902876..25902936,-!p1@EBF2!0.75!4.62!EBF2;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.75!SNAI2;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.57!TBX18;;chr19:46801639..46801699,+!p1@HIF3A!0.74!4.55!HIF3A;;chr11:65667846..65667868,-!p1@FOSL1!0.73!130.47!FOSL1;;chr14:55493763..55493824,-!p1@WDHD1!0.73!36.96!WDHD1;;chr8:77593474..77593612,+!p1@ZFHX4!0.73!20.61!ZFHX4;;chr19:22817119..22817145,+!p1@ZNF492!0.73!7.77!ZNF492;;chr5:92918956..92918969,+!p4@NR2F1!0.73!4.91!NR2F1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.69!GLIS1;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.33!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.33!BNC2;;chr10:35484804..35484902,+!p2@CREM!0.72!18.04!CREM;;chr12:66218469..66218477,+!p16@HMGA2!0.72!4.25!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.71!21.12!TAL1;;chr15:96869222..96869251,+!p18@NR2F2!0.71!4.91!NR2F2;;chr5:92920456..92920488,+!p9@NR2F1!0.71!4.91!NR2F1;;chr4:299227..299272,-!p1@ZNF732!0.71!4.18!ZNF732;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.11!ZFY;;chr13:100634004..10063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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000708
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.ctss.bed.gz
|id=FF:11654-122E7
|id=FF:11654-122E7
|is_a=EFO:0002091;;FF:0000091
|is_a=EFO:0002091;;FF:0000091
|is_obsolete=
|is_obsolete=
|library_id=CNhs12731
|library_id_phase_based=2:CNhs12731
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11654
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11654
|name=Meningeal Cells, donor3
|name=Meningeal Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12731,LSID960,release012,COMPLETED
|profile_hcage=CNhs12731,LSID960,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_catalog_number=SC1405
Line 57: Line 76:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
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|rna_tube_id=1.22E+09
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|rna_weight_ug=10
|sample_age=
|sample_age=
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|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 81: Line 101:
|top_motifs=HSF1,2:1.68033279123;E2F1..5:1.40704291607;HOX{A5,B5}:1.37777632318;PAX8:1.35614239843;TFDP1:1.32605869307;EN1,2:1.30351445043;NR3C1:1.16718959246;T:1.16314137749;GFI1:1.08184081328;ZIC1..3:1.04835971579;NFY{A,B,C}:0.987927918658;TAL1_TCF{3,4,12}:0.977997175215;MYB:0.908818791026;NKX2-2,8:0.838442208006;GZF1:0.787444061413;IKZF1:0.761414666739;ALX4:0.74768488434;MYBL2:0.74367123182;GATA4:0.741573969189;ZNF143:0.729835478711;FOX{I1,J2}:0.701100558108;TEAD1:0.693694212112;SOX17:0.644097183947;HES1:0.637134182981;LEF1_TCF7_TCF7L1,2:0.63323717643;SRF:0.629619979575;TLX1..3_NFIC{dimer}:0.623476513405;ZNF384:0.616948853882;CDC5L:0.608224345817;CRX:0.592396222877;HBP1_HMGB_SSRP1_UBTF:0.558820670815;KLF4:0.518409647585;NFIX:0.514399388866;LHX3,4:0.493348130089;FOXD3:0.478969076088;ZNF238:0.462800153258;XCPE1{core}:0.453942266411;PAX1,9:0.438456694824;NFATC1..3:0.435540376665;PAX3,7:0.434473919743;EBF1:0.429817945516;TEF:0.410889155509;PAX4:0.391772727917;ELF1,2,4:0.390836935097;TFAP4:0.37952528581;NRF1:0.374879489977;STAT5{A,B}:0.373933312041;ZNF423:0.372220037105;NKX3-1:0.368921848976;ONECUT1,2:0.343981160473;UFEwm:0.339535476099;SOX2:0.336409305611;XBP1:0.29980352284;HOX{A4,D4}:0.297934264712;BACH2:0.297827963329;HMGA1,2:0.287992737238;GTF2A1,2:0.255769337518;ALX1:0.253773383471;HAND1,2:0.243489303995;YY1:0.219704753815;HNF4A_NR2F1,2:0.215690078213;FOSL2:0.203559606152;NR1H4:0.195333016747;GFI1B:0.18817726414;RXR{A,B,G}:0.183358778985;PRDM1:0.168965190034;FOS_FOS{B,L1}_JUN{B,D}:0.167400009297;RBPJ:0.150920219856;MZF1:0.140445256272;PAX5:0.131669543;NFE2L2:0.126373706112;SOX{8,9,10}:0.124934770927;GTF2I:0.10947488934;EVI1:0.104048492773;TFCP2:0.0738794222746;HLF:0.0701411354565;ELK1,4_GABP{A,B1}:0.0658355382749;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0642913777468;NR6A1:0.057731005866;POU1F1:0.054615356247;ESRRA:0.0535333117244;ARID5B:0.0462987274374;FOXA2:0.0319696951958;POU3F1..4:0.0298625258494;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0284441845798;MEF2{A,B,C,D}:0.0194089731531;TOPORS:0.00757100993189;SPZ1:0.0064051563396;ZFP161:0.00496735312365;NHLH1,2:-0.00617181575821;MAZ:-0.0111693445672;POU2F1..3:-0.0113364115009;TBX4,5:-0.0197898814869;PPARG:-0.0200858719204;FOXQ1:-0.0200971970198;TP53:-0.0283012810148;SOX5:-0.0308174660952;PDX1:-0.0355240781012;FOXO1,3,4:-0.0438992598524;NANOG{mouse}:-0.0593982091803;MYFfamily:-0.0612735977175;AHR_ARNT_ARNT2:-0.0626452703071;HOXA9_MEIS1:-0.0971191172582;AR:-0.104298498468;ADNP_IRX_SIX_ZHX:-0.104413306238;AIRE:-0.109256934575;STAT1,3:-0.110543198541;HNF1A:-0.114891653186;NFE2:-0.117637300407;POU5F1:-0.121364164802;CUX2:-0.12879597907;ETS1,2:-0.130448455633;OCT4_SOX2{dimer}:-0.143222341094;RUNX1..3:-0.152390403573;JUN:-0.154888900889;PBX1:-0.159327722509;NANOG:-0.159670854595;NKX6-1,2:-0.164709092452;bHLH_family:-0.170948873182;BPTF:-0.178471170435;TGIF1:-0.180935617095;RFX1:-0.181340156061;NR5A1,2:-0.182390779271;MAFB:-0.187640257458;ZBTB6:-0.191873982736;DMAP1_NCOR{1,2}_SMARC:-0.197419184729;GCM1,2:-0.201455376212;PATZ1:-0.215343024092;NFE2L1:-0.216734036792;TBP:-0.218681716465;PRRX1,2:-0.230015718051;NFIL3:-0.231957665554;FOXP3:-0.243261595219;SPI1:-0.243669785222;SPIB:-0.254968620667;HIC1:-0.257541275876;HOX{A6,A7,B6,B7}:-0.269637634111;IKZF2:-0.274229559166;BREu{core}:-0.276606554767;CEBPA,B_DDIT3:-0.281060950258;ZNF148:-0.282490952547;PAX2:-0.294446129965;NKX3-2:-0.309757579651;ATF6:-0.314332047808;HIF1A:-0.323370346246;MTF1:-0.327100440514;MED-1{core}:-0.328079738189;GLI1..3:-0.333175600328;GATA6:-0.340718506211;SP1:-0.346601396615;CDX1,2,4:-0.358329979725;CREB1:-0.359074136477;NFKB1_REL_RELA:-0.373852494265;RXRA_VDR{dimer}:-0.377217104084;NKX2-3_NKX2-5:-0.384223582798;MTE{core}:-0.388443143243;FOXM1:-0.396426730115;ZBTB16:-0.410957150294;ESR1:-0.430944837739;FOXL1:-0.434103957021;REST:-0.449489397861;TFAP2B:-0.45049649468;NKX2-1,4:-0.489687364435;TFAP2{A,C}:-0.519532930359;HMX1:-0.52845353009;EGR1..3:-0.542125339891;STAT2,4,6:-0.555405701724;PAX6:-0.556424966064;ATF2:-0.581713376703;RREB1:-0.588059054221;EP300:-0.589477913348;ATF5_CREB3:-0.605579238522;IRF1,2:-0.610672297625;SNAI1..3:-0.61637323433;FOXP1:-0.620219831658;IRF7:-0.625991130187;VSX1,2:-0.646067205378;RFX2..5_RFXANK_RFXAP:-0.713130213182;ATF4:-0.743557615257;RORA:-0.750225673479;SMAD1..7,9:-0.775184957543;SREBF1,2:-0.850304967536;PITX1..3:-0.864222713037;POU6F1:-0.867910053389;FOX{F1,F2,J1}:-0.889682355203;ZEB1:-0.91409014651;LMO2:-0.917776469969;MYOD1:-0.939196720698;FOX{D1,D2}:-0.942014609489;FOXN1:-0.962675094651;DBP:-0.986245995258;TLX2:-1.0400915677
|top_motifs=HSF1,2:1.68033279123;E2F1..5:1.40704291607;HOX{A5,B5}:1.37777632318;PAX8:1.35614239843;TFDP1:1.32605869307;EN1,2:1.30351445043;NR3C1:1.16718959246;T:1.16314137749;GFI1:1.08184081328;ZIC1..3:1.04835971579;NFY{A,B,C}:0.987927918658;TAL1_TCF{3,4,12}:0.977997175215;MYB:0.908818791026;NKX2-2,8:0.838442208006;GZF1:0.787444061413;IKZF1:0.761414666739;ALX4:0.74768488434;MYBL2:0.74367123182;GATA4:0.741573969189;ZNF143:0.729835478711;FOX{I1,J2}:0.701100558108;TEAD1:0.693694212112;SOX17:0.644097183947;HES1:0.637134182981;LEF1_TCF7_TCF7L1,2:0.63323717643;SRF:0.629619979575;TLX1..3_NFIC{dimer}:0.623476513405;ZNF384:0.616948853882;CDC5L:0.608224345817;CRX:0.592396222877;HBP1_HMGB_SSRP1_UBTF:0.558820670815;KLF4:0.518409647585;NFIX:0.514399388866;LHX3,4:0.493348130089;FOXD3:0.478969076088;ZNF238:0.462800153258;XCPE1{core}:0.453942266411;PAX1,9:0.438456694824;NFATC1..3:0.435540376665;PAX3,7:0.434473919743;EBF1:0.429817945516;TEF:0.410889155509;PAX4:0.391772727917;ELF1,2,4:0.390836935097;TFAP4:0.37952528581;NRF1:0.374879489977;STAT5{A,B}:0.373933312041;ZNF423:0.372220037105;NKX3-1:0.368921848976;ONECUT1,2:0.343981160473;UFEwm:0.339535476099;SOX2:0.336409305611;XBP1:0.29980352284;HOX{A4,D4}:0.297934264712;BACH2:0.297827963329;HMGA1,2:0.287992737238;GTF2A1,2:0.255769337518;ALX1:0.253773383471;HAND1,2:0.243489303995;YY1:0.219704753815;HNF4A_NR2F1,2:0.215690078213;FOSL2:0.203559606152;NR1H4:0.195333016747;GFI1B:0.18817726414;RXR{A,B,G}:0.183358778985;PRDM1:0.168965190034;FOS_FOS{B,L1}_JUN{B,D}:0.167400009297;RBPJ:0.150920219856;MZF1:0.140445256272;PAX5:0.131669543;NFE2L2:0.126373706112;SOX{8,9,10}:0.124934770927;GTF2I:0.10947488934;EVI1:0.104048492773;TFCP2:0.0738794222746;HLF:0.0701411354565;ELK1,4_GABP{A,B1}:0.0658355382749;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0642913777468;NR6A1:0.057731005866;POU1F1:0.054615356247;ESRRA:0.0535333117244;ARID5B:0.0462987274374;FOXA2:0.0319696951958;POU3F1..4:0.0298625258494;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0284441845798;MEF2{A,B,C,D}:0.0194089731531;TOPORS:0.00757100993189;SPZ1:0.0064051563396;ZFP161:0.00496735312365;NHLH1,2:-0.00617181575821;MAZ:-0.0111693445672;POU2F1..3:-0.0113364115009;TBX4,5:-0.0197898814869;PPARG:-0.0200858719204;FOXQ1:-0.0200971970198;TP53:-0.0283012810148;SOX5:-0.0308174660952;PDX1:-0.0355240781012;FOXO1,3,4:-0.0438992598524;NANOG{mouse}:-0.0593982091803;MYFfamily:-0.0612735977175;AHR_ARNT_ARNT2:-0.0626452703071;HOXA9_MEIS1:-0.0971191172582;AR:-0.104298498468;ADNP_IRX_SIX_ZHX:-0.104413306238;AIRE:-0.109256934575;STAT1,3:-0.110543198541;HNF1A:-0.114891653186;NFE2:-0.117637300407;POU5F1:-0.121364164802;CUX2:-0.12879597907;ETS1,2:-0.130448455633;OCT4_SOX2{dimer}:-0.143222341094;RUNX1..3:-0.152390403573;JUN:-0.154888900889;PBX1:-0.159327722509;NANOG:-0.159670854595;NKX6-1,2:-0.164709092452;bHLH_family:-0.170948873182;BPTF:-0.178471170435;TGIF1:-0.180935617095;RFX1:-0.181340156061;NR5A1,2:-0.182390779271;MAFB:-0.187640257458;ZBTB6:-0.191873982736;DMAP1_NCOR{1,2}_SMARC:-0.197419184729;GCM1,2:-0.201455376212;PATZ1:-0.215343024092;NFE2L1:-0.216734036792;TBP:-0.218681716465;PRRX1,2:-0.230015718051;NFIL3:-0.231957665554;FOXP3:-0.243261595219;SPI1:-0.243669785222;SPIB:-0.254968620667;HIC1:-0.257541275876;HOX{A6,A7,B6,B7}:-0.269637634111;IKZF2:-0.274229559166;BREu{core}:-0.276606554767;CEBPA,B_DDIT3:-0.281060950258;ZNF148:-0.282490952547;PAX2:-0.294446129965;NKX3-2:-0.309757579651;ATF6:-0.314332047808;HIF1A:-0.323370346246;MTF1:-0.327100440514;MED-1{core}:-0.328079738189;GLI1..3:-0.333175600328;GATA6:-0.340718506211;SP1:-0.346601396615;CDX1,2,4:-0.358329979725;CREB1:-0.359074136477;NFKB1_REL_RELA:-0.373852494265;RXRA_VDR{dimer}:-0.377217104084;NKX2-3_NKX2-5:-0.384223582798;MTE{core}:-0.388443143243;FOXM1:-0.396426730115;ZBTB16:-0.410957150294;ESR1:-0.430944837739;FOXL1:-0.434103957021;REST:-0.449489397861;TFAP2B:-0.45049649468;NKX2-1,4:-0.489687364435;TFAP2{A,C}:-0.519532930359;HMX1:-0.52845353009;EGR1..3:-0.542125339891;STAT2,4,6:-0.555405701724;PAX6:-0.556424966064;ATF2:-0.581713376703;RREB1:-0.588059054221;EP300:-0.589477913348;ATF5_CREB3:-0.605579238522;IRF1,2:-0.610672297625;SNAI1..3:-0.61637323433;FOXP1:-0.620219831658;IRF7:-0.625991130187;VSX1,2:-0.646067205378;RFX2..5_RFXANK_RFXAP:-0.713130213182;ATF4:-0.743557615257;RORA:-0.750225673479;SMAD1..7,9:-0.775184957543;SREBF1,2:-0.850304967536;PITX1..3:-0.864222713037;POU6F1:-0.867910053389;FOX{F1,F2,J1}:-0.889682355203;ZEB1:-0.91409014651;LMO2:-0.917776469969;MYOD1:-0.939196720698;FOX{D1,D2}:-0.942014609489;FOXN1:-0.962675094651;DBP:-0.986245995258;TLX2:-1.0400915677
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11654-122E7;search_select_hide=table117:FF:11654-122E7
}}
}}

Latest revision as of 18:13, 4 June 2020

Name:Meningeal Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12731
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemeninges
dev stageNA
sexNA
ageNA
cell typemeningeal cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4055
catalog numberSC1405
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004675
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12731 CAGE DRX008343 DRR009215
Accession ID Hg19

Library idBAMCTSS
CNhs12731 DRZ000640 DRZ002025
Accession ID Hg38

Library idBAMCTSS
CNhs12731 DRZ011990 DRZ013375
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.172
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.634
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.042
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0307
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0327
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.127
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.338
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0511
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.22
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.247
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.614
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0307
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0307
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0407
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.581
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0594
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.587
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.00386
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0594
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0864
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.392
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.183
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.257
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12731

Jaspar motifP-value
MA0002.20.538
MA0003.10.183
MA0004.10.503
MA0006.10.297
MA0007.10.251
MA0009.10.915
MA0014.10.937
MA0017.10.744
MA0018.20.00157
MA0019.10.414
MA0024.11.69776e-16
MA0025.10.0564
MA0027.10.784
MA0028.10.00483
MA0029.10.672
MA0030.10.00896
MA0031.10.0544
MA0035.20.179
MA0038.10.0059
MA0039.20.542
MA0040.10.974
MA0041.10.766
MA0042.10.722
MA0043.13.2894e-4
MA0046.10.642
MA0047.20.817
MA0048.10.0236
MA0050.12.76139e-8
MA0051.10.0032
MA0052.10.499
MA0055.10.262
MA0057.10.695
MA0058.10.321
MA0059.10.554
MA0060.19.39292e-9
MA0061.10.00238
MA0062.20.893
MA0065.20.773
MA0066.10.246
MA0067.10.00205
MA0068.10.925
MA0069.10.714
MA0070.10.28
MA0071.10.623
MA0072.10.375
MA0073.10.922
MA0074.10.715
MA0076.10.142
MA0077.10.932
MA0078.10.815
MA0079.20.0328
MA0080.20.00195
MA0081.10.921
MA0083.10.0139
MA0084.10.0403
MA0087.10.48
MA0088.10.00424
MA0090.10.00374
MA0091.10.715
MA0092.10.975
MA0093.10.538
MA0099.21.57755e-5
MA0100.10.0138
MA0101.10.00752
MA0102.24.43263e-4
MA0103.11.34118e-5
MA0104.20.766
MA0105.10.393
MA0106.10.44
MA0107.12.24772e-4
MA0108.20.718
MA0111.10.549
MA0112.20.931
MA0113.10.954
MA0114.10.548
MA0115.10.705
MA0116.10.204
MA0117.10.91
MA0119.10.362
MA0122.10.686
MA0124.10.274
MA0125.10.878
MA0131.10.678
MA0135.10.238
MA0136.10.0528
MA0137.20.385
MA0138.20.116
MA0139.10.832
MA0140.10.816
MA0141.10.797
MA0142.10.459
MA0143.10.928
MA0144.10.588
MA0145.10.71
MA0146.10.598
MA0147.10.515
MA0148.10.507
MA0149.10.593
MA0150.10.259
MA0152.10.0331
MA0153.10.298
MA0154.10.634
MA0155.10.686
MA0156.10.932
MA0157.10.569
MA0159.10.263
MA0160.10.074
MA0162.10.0469
MA0163.10.222
MA0164.10.663
MA0258.10.0831
MA0259.10.0638



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12731

Novel motifP-value
10.996
100.565
1000.938
1010.757
1020.206
1030.885
1040.669
1050.681
1060.169
1070.302
1080.348
1090.151
110.868
1100.202
1110.682
1120.205
1130.0348
1140.993
1150.663
1160.487
1170.575
1180.219
1190.535
120.354
1200.147
1210.53
1220.498
1237.60717e-4
1240.949
1250.323
1260.391
1270.329
1280.254
1290.824
130.241
1300.00788
1310.818
1320.641
1330.99
1340.277
1350.326
1360.158
1370.207
1380.452
1394.93403e-4
140.0515
1400.361
1410.831
1420.476
1430.257
1440.497
1450.871
1460.147
1470.275
1480.806
1490.954
150.886
1500.284
1510.134
1520.25
1530.814
1540.253
1550.0754
1560.62
1570.0716
1580.0107
1590.251
160.436
1600.0842
1610.55
1620.424
1630.97
1640.158
1650.46
1660.937
1670.289
1680.443
1690.148
170.845
180.493
190.236
20.981
200.39
210.0766
220.411
230.191
240.0315
250.862
260.643
270.451
280.323
290.757
30.764
300.496
310.37
320.351
330.155
340.893
350.164
360.156
370.966
380.735
390.491
40.466
400.644
410.462
420.405
430.42
440.831
450.346
460.915
470.319
480.61
490.181
50.63
500.616
510.912
520.112
530.119
540.766
550.589
560.939
570.739
580.127
590.286
60.948
600.0554
610.83
620.426
630.499
640.743
650.365
660.011
670.759
680.528
690.607
70.942
700.00891
710.72
720.55
730.908
740.638
750.93
760.481
770.952
780.754
790.84
80.359
800.798
810.321
820.017
830.21
840.208
850.0551
860.161
870.0521
880.64
890.905
90.368
900.748
910.761
920.0565
930.554
940.745
950.0954
960.606
970.289
980.778
990.00106



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12731


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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