FF:11762-123H7: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer metastasis, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12378
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005043

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12378		CAGE		DRX008561		DRR009433

Accession ID Hg19

Library id		BAM		CTSS
CNhs12378		DRZ000858		DRZ002243

Accession ID Hg38

Library id		BAM		CTSS
CNhs12378		DRZ012208		DRZ013593

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.198
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.161
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0374
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.343
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0616
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0102
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0608
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0.114
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.419
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.162
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0608
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0505
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.414
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.114
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0608
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0608
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.162
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.934
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.753
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.881
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.817
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0671
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.279
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12378

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.816
MA0003.1	MA0003.1	0.406
MA0004.1	MA0004.1	0.135
MA0006.1	MA0006.1	0.102
MA0007.1	MA0007.1	0.241
MA0009.1	MA0009.1	0.367
MA0014.1	MA0014.1	0.967
MA0017.1	MA0017.1	0.517
MA0018.2	MA0018.2	0.0144
MA0019.1	MA0019.1	0.138
MA0024.1	MA0024.1	3.26936e-7
MA0025.1	MA0025.1	0.18
MA0027.1	MA0027.1	0.637
MA0028.1	MA0028.1	0.0503
MA0029.1	MA0029.1	0.697
MA0030.1	MA0030.1	0.371
MA0031.1	MA0031.1	0.13
MA0035.2	MA0035.2	0.987
MA0038.1	MA0038.1	0.05
MA0039.2	MA0039.2	0.892
MA0040.1	MA0040.1	0.38
MA0041.1	MA0041.1	0.468
MA0042.1	MA0042.1	0.54
MA0043.1	MA0043.1	0.379
MA0046.1	MA0046.1	0.335
MA0047.2	MA0047.2	0.25
MA0048.1	MA0048.1	0.149
MA0050.1	MA0050.1	0.0174
MA0051.1	MA0051.1	0.366
MA0052.1	MA0052.1	0.0982
MA0055.1	MA0055.1	0.124
MA0057.1	MA0057.1	0.489
MA0058.1	MA0058.1	0.161
MA0059.1	MA0059.1	0.593
MA0060.1	MA0060.1	9.57484e-9
MA0061.1	MA0061.1	0.0786
MA0062.2	MA0062.2	5.94609e-6
MA0065.2	MA0065.2	0.797
MA0066.1	MA0066.1	0.807
MA0067.1	MA0067.1	0.162
MA0068.1	MA0068.1	0.697
MA0069.1	MA0069.1	0.378
MA0070.1	MA0070.1	0.194
MA0071.1	MA0071.1	0.986
MA0072.1	MA0072.1	0.821
MA0073.1	MA0073.1	0.935
MA0074.1	MA0074.1	0.259
MA0076.1	MA0076.1	0.00655
MA0077.1	MA0077.1	0.183
MA0078.1	MA0078.1	0.922
MA0079.2	MA0079.2	0.8
MA0080.2	MA0080.2	1.42119e-8
MA0081.1	MA0081.1	9.10708e-5
MA0083.1	MA0083.1	5.94541e-6
MA0084.1	MA0084.1	0.871
MA0087.1	MA0087.1	0.564
MA0088.1	MA0088.1	0.198
MA0090.1	MA0090.1	0.0014
MA0091.1	MA0091.1	0.871
MA0092.1	MA0092.1	0.22
MA0093.1	MA0093.1	0.304
MA0099.2	MA0099.2	3.68853e-7
MA0100.1	MA0100.1	0.0607
MA0101.1	MA0101.1	0.217
MA0102.2	MA0102.2	0.9
MA0103.1	MA0103.1	0.035
MA0104.2	MA0104.2	0.044
MA0105.1	MA0105.1	0.369
MA0106.1	MA0106.1	0.188
MA0107.1	MA0107.1	0.0177
MA0108.2	MA0108.2	0.00646
MA0111.1	MA0111.1	0.11
MA0112.2	MA0112.2	0.0382
MA0113.1	MA0113.1	0.652
MA0114.1	MA0114.1	0.716
MA0115.1	MA0115.1	0.212
MA0116.1	MA0116.1	0.85
MA0117.1	MA0117.1	0.854
MA0119.1	MA0119.1	0.424
MA0122.1	MA0122.1	0.569
MA0124.1	MA0124.1	0.00782
MA0125.1	MA0125.1	0.129
MA0131.1	MA0131.1	0.105
MA0135.1	MA0135.1	0.0531
MA0136.1	MA0136.1	1.78917e-11
MA0137.2	MA0137.2	0.885
MA0138.2	MA0138.2	0.543
MA0139.1	MA0139.1	0.696
MA0140.1	MA0140.1	0.627
MA0141.1	MA0141.1	0.43
MA0142.1	MA0142.1	0.105
MA0143.1	MA0143.1	0.967
MA0144.1	MA0144.1	0.804
MA0145.1	MA0145.1	0.161
MA0146.1	MA0146.1	0.47
MA0147.1	MA0147.1	0.0414
MA0148.1	MA0148.1	0.648
MA0149.1	MA0149.1	0.651
MA0150.1	MA0150.1	0.0698
MA0152.1	MA0152.1	0.03
MA0153.1	MA0153.1	0.725
MA0154.1	MA0154.1	0.417
MA0155.1	MA0155.1	0.0476
MA0156.1	MA0156.1	1.08428e-5
MA0157.1	MA0157.1	0.142
MA0159.1	MA0159.1	0.987
MA0160.1	MA0160.1	0.23
MA0162.1	MA0162.1	0.107
MA0163.1	MA0163.1	0.622
MA0164.1	MA0164.1	0.547
MA0258.1	MA0258.1	0.331
MA0259.1	MA0259.1	0.0814

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12378

Novel motif	Logo	P-value
1	1	0.929
10	10	0.442
100	100	0.922
101	101	0.958
102	102	0.167
103	103	0.275
104	104	0.943
105	105	0.664
106	106	0.13
107	107	0.0756
108	108	0.588
109	109	0.777
11	11	0.613
110	110	0.127
111	111	0.0262
112	112	0.828
113	113	0.0212
114	114	0.735
115	115	0.0846
116	116	0.34
117	117	0.867
118	118	0.264
119	119	0.995
12	12	0.543
120	120	0.531
121	121	0.867
122	122	0.289
123	123	1.12643e-4
124	124	0.173
125	125	0.301
126	126	0.868
127	127	0.746
128	128	0.0506
129	129	0.534
13	13	0.569
130	130	0.829
131	131	0.0517
132	132	0.446
133	133	0.309
134	134	0.971
135	135	0.505
136	136	0.923
137	137	0.612
138	138	0.951
139	139	0.186
14	14	0.264
140	140	0.21
141	141	0.402
142	142	0.317
143	143	0.585
144	144	0.271
145	145	0.951
146	146	0.814
147	147	0.0827
148	148	0.257
149	149	0.0459
15	15	0.685
150	150	0.189
151	151	0.839
152	152	0.0529
153	153	0.703
154	154	0.934
155	155	0.134
156	156	0.611
157	157	0.657
158	158	0.0176
159	159	0.317
16	16	0.0203
160	160	0.836
161	161	0.792
162	162	0.423
163	163	0.02
164	164	0.0261
165	165	0.689
166	166	0.162
167	167	0.161
168	168	0.684
169	169	0.0718
17	17	0.537
18	18	0.454
19	19	0.312
2	2	0.152
20	20	0.47
21	21	0.974
22	22	0.2
23	23	0.0113
24	24	0.869
25	25	0.0462
26	26	0.492
27	27	0.806
28	28	0.758
29	29	0.208
3	3	0.462
30	30	0.286
31	31	0.568
32	32	9.42625e-16
33	33	0.692
34	34	0.305
35	35	0.643
36	36	0.0944
37	37	0.191
38	38	0.454
39	39	0.329
4	4	0.549
40	40	0.963
41	41	0.4
42	42	0.354
43	43	0.325
44	44	0.436
45	45	0.426
46	46	0.721
47	47	0.553
48	48	0.97
49	49	0.474
5	5	0.956
50	50	0.789
51	51	0.523
52	52	0.353
53	53	0.053
54	54	0.491
55	55	0.521
56	56	0.702
57	57	0.863
58	58	0.283
59	59	0.164
6	6	0.647
60	60	0.522
61	61	0.623
62	62	0.766
63	63	0.579
64	64	0.996
65	65	0.452
66	66	0.322
67	67	0.874
68	68	0.842
69	69	0.645
7	7	0.294
70	70	0.331
71	71	0.515
72	72	0.917
73	73	0.146
74	74	0.00927
75	75	0.637
76	76	0.575
77	77	0.00915
78	78	0.683
79	79	0.00352
8	8	0.313
80	80	0.443
81	81	0.713
82	82	0.421
83	83	0.565
84	84	0.654
85	85	0.0325
86	86	0.949
87	87	0.274
88	88	0.635
89	89	0.152
9	9	0.341
90	90	0.244
91	91	0.882
92	92	0.0401
93	93	0.971
94	94	0.929
95	95	0.91
96	96	0.916
97	97	0.105
98	98	0.0113
99	99	0.0659

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12378

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000274 human mesenchymal precursor cell- ovarian cancer-metastasis sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005043
+|accession_numbers=CAGE;DRX008561;DRR009433;DRZ000858;DRZ002243;DRZ012208;DRZ013593
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!2.00!202.25!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.71!58.00!BNC1;;chr18:19749386..19749404,+!p2@GATA6!1.68!66.71!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!1.53!41.77!NFATC2;;chr4:174451370..174451387,-!p1@HAND2!1.48!29.00!HAND2;;chr21:36260773..36260804,-!p7@RUNX1!1.47!38.02!RUNX1;;chr8:72756637..72756664,-!p3@MSC!1.43!29.00!MSC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.18!ZBED1;;chr20:61051039..61051057,-!p1@GATA5!1.27!17.43!GATA5;;chr19:45971246..45971265,+!p1@FOSB!1.26!310.43!FOSB;;chr12:26277817..26277863,-!p2@BHLHE41!1.24!22.24!BHLHE41;;chr11:32457075..32457095,-!p1@WT1!1.23!16.08!WT1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.89!MSC;;chr18:19749541..19749557,+!p1@GATA6!1.20!46.73!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.18!14.27!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.14!65.96!CREB3L1;;chr8:72756267..72756296,-!p4@MSC!1.13!18.18!MSC;;chr7:27183114..27183138,-!p3@HOXA5!1.12!12.17!HOXA5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.11!12.02!SEBOX;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.00!ZFPM2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.43!CREB3L1;;chr10:51572408..51572454,+!p3@NCOA4!1.03!58.15!NCOA4;;chr17:46622070..46622109,-!p1@HOXB2!1.03!22.24!HOXB2;;chr6:19837592..19837621,+!p1@ID4!1.02!58.90!ID4;;chr1:59249688..59249703,-!p3@JUN!1.02!58.30!JUN;;chr2:66662281..66662308,+!p1@MEIS1!1.01!32.31!MEIS1;;chr8:72756063..72756125,-!p1@MSC!1.01!18.93!MSC;;chr18:19749353..19749367,+!p4@GATA6!1.01!9.32!GATA6;;chr10:51572339..51572376,+!p4@NCOA4!0.99!20.13!NCOA4;;chr20:51588873..51588953,+!p1@TSHZ2!0.96!10.97!TSHZ2;;chr8:72756213..72756243,-!p5@MSC!0.95!10.37!MSC;;chr2:66662895..66662907,+!p3@MEIS1!0.95!9.92!MEIS1;;chr10:63809106..63809127,+!p1@ARID5B!0.93!104.88!ARID5B;;chr1:37940170..37940190,+!p1@ZC3H12A!0.93!96.16!ZC3H12A;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.66!ZNF467;;chr16:31076332..31076388,-!p3@ZNF668!0.91!7.06!ZNF668;;chr1:151032860..151032918,+!p1@MLLT11!0.89!84.75!MLLT11;;chr2:145275162..145275202,-!p2@ZEB2!0.89!41.47!ZEB2;;chr12:80085061..80085119,-!p6@PAWR!0.89!10.97!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.89!8.41!HOXC4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.88!61.46!PPP1R13L;;chr5:137804484..137804498,+!p2@EGR1!0.88!27.65!EGR1;;chr17:46682321..46682362,-!p1@HOXB6!0.88!6.61!HOXB6;;chr4:174451350..174451363,-!p3@HAND2!0.88!6.61!HAND2;;chr7:27170359..27170381,-!p1@HOXA4!0.87!6.46!HOXA4;;chr1:158979872..158979898,+!p3@IFI16!0.86!20.13!IFI16;;chr14:75745523..75745537,+!p1@FOS!0.85!784.04!FOS;;chr7:27153454..27153469,-!p2@HOXA3!0.85!6.01!HOXA3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.84!5.86!SEBOX;;chr7:1577899..1577943,+!p3@MAFK!0.83!5.71!MAFK;;chr3:5021268..5021282,+!p4@BHLHE40!0.81!11.72!BHLHE40;;chr8:106330696..106330719,+!p2@ZFPM2!0.81!7.06!ZFPM2;;chr7:27183191..27183214,-!p4@HOXA5!0.81!5.41!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.81!5.41!HOXA5;;chr2:66662249..66662267,+!p2@MEIS1!0.80!21.94!MEIS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.83!BHLHE41;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.56!EBF4;;chr21:36260343..36260402,-!p6@RUNX1!0.79!8.56!RUNX1;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.11!BARX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.79!5.11!HOXC5;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!27.05!NFE2L3;;chr2:46612334..46612349,+!p6@EPAS1!0.78!6.76!EPAS1;;chr7:27169801..27169844,-!p2@HOXA4!0.78!4.96!HOXA4;;chr8:37963466..37963506,+!p3@ASH2L!0.76!6.16!ASH2L;;chr8:40755333..40755352,-!p1@ZMAT4!0.76!4.81!ZMAT4;;chr11:32457413..32457431,-!p2@WT1!0.76!4.81!WT1;;chr2:239756671..239756732,+!p1@TWIST2!0.75!16.08!TWIST2;;chr21:36421535..36421610,-!p2@RUNX1!0.74!17.43!RUNX1;;chr10:63809077..63809089,+!p5@ARID5B!0.74!10.37!ARID5B;;chr17:46622114..46622138,-!p4@HOXB2!0.73!7.06!HOXB2;;chr8:72756380..72756427,-!p8@MSC!0.73!4.36!MSC;;chr1:151032782..151032801,+!p4@MLLT11!0.72!9.02!MLLT11;;chr20:6748325..6748352,+!p1@BMP2!0.72!6.46!BMP2;;chr12:26277929..26277955,-!p3@BHLHE41!0.72!6.31!BHLHE41;;chr12:80085120..80085156,-!p14@PAWR!0.72!4.21!PAWR;;chr2:208030647..208030689,-!p1@KLF7!0.71!38.62!KLF7;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.60!HIC1;;chr10:77161533..77161546,-!p2@ZNF503!0.70!17.88!ZNF503;;chr19:42636586..42636607,-!p1@POU2F2!0.70!12.17!POU2F2;;chr9:16870710..16870763,-!p1@BNC2!0.70!7.36!BNC2;;chr21:36260295..36260310,-!p3@RUNX1!0.70!6.91!RUNX1;;chr17:46132044..46132080,+!p4@NFE2L1!0.70!4.06!NFE2L1;;chr9:4300050..4300118,-!p1@GLIS3!0.69!29.15!GLIS3;;chr1:151032833..151032850,+!p3@MLLT11!0.68!9.47!MLLT11;;chr17:46655704..46655718,-!p2@HOXB4!0.68!6.01!HOXB4;;chr7:149470540..149470596,-!p2@ZNF467!0.68!5.26!ZNF467;;chr7:44143925..44143970,+!p1@AEBP1!0.67!94.81!AEBP1;;chr1:8938709..8938720,-!p3@ENO1!0.66!199.99!ENO1;;chr6:43140095..43140145,+!p5@SRF!0.66!4.66!SRF;;chr2:66662510..66662521,+!p6@MEIS1!0.66!3.61!MEIS1;;chr8:37963407..37963454,+!p2@ASH2L!0.65!11.57!ASH2L;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.46!TWIST2;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.26!HOXB7;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.46!HOXA5;;chr8:106330543..106330554,+!p4@ZFPM2!0.65!3.46!ZFPM2;;chr8:72756194..72756208,-!p9@MSC!0.65!3.46!MSC;;chr9:132427972..132428056,+!p1@PRRX2!0.64!4.66!PRRX2;;chr8:49833948..49833973,-!p2@SNAI2!0.63!24.64!SNAI2;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.62!NCOA7;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.61!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.76!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.62!17.28!HMGA2;;chr8:28243813..28243839,-!p4@ZNF395!0.62!6.31!ZNF395;;chr14:75746722..75746777,+!p2@FOS!0.62!4.21!FOS;;chr8:72755987..72756002,-!p7@MSC!0.62!3.16!MSC;;chr12:54447637..54447659,+!p4@HOXC4!0.62!3.16!HOXC4;;chr2:101436564..101436647,+!p1@NPAS2!0.60!73.48!NPAS2;;chr5:92918919..92918942,+!p1@NR2F1!0.60!15.93!NR2F1;;chr17:46621937..46621966,-!p2@HOXB2!0.60!9.32!HOXB2;;chr10:22292591..22292606,-!p2@DNAJC1!0.60!5.26!DNAJC1;;chr7:27170274..27170308,-!p3@HOXA4!0.60!3.01!HOXA4;;chr3:25470156..25470227,+!p2@RARB!0.60!3.01!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!254.69!TAX1BP3;;chr15:83953373..83953386,-!p2@BNC1!0.59!2.85!BNC1;;chr2:66662396..66662407,+!p4@MEIS1!0.59!2.85!MEIS1;;chr19:54058073..54058088,+!p1@ZNF331!0.59!2.85!ZNF331;;chr16:88519669..88519726,+!p1@ZFPM1!0.58!30.95!ZFPM1;;chr11:707063..707088,-!p4@DEAF1!0.58!3.76!DEAF1;;chr8:49833978..49833996,-!p1@SNAI2!0.57!70.17!SNAI2;;chr7:17338266..17338282,+!p1@AHR!0.57!36.66!AHR;;chr3:114343768..114343822,-!p1@ZBTB20!0.57!14.42!ZBTB20;;chr11:46299443..46299459,+!p4@CREB3L1!0.57!2.70!CREB3L1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.57!2.70!ZBTB7C;;chr7:63505799..63505904,+!p1@ZNF727!0.57!2.70!ZNF727;;chr10:63809134..63809145,+!p6@ARID5B!0.56!7.06!ARID5B;;chr9:4300016..4300039,-!p2@GLIS3!0.56!5.11!GLIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.46!MLLT11;;chr8:28243785..28243799,-!p6@ZNF395!0.56!3.31!ZNF395;;chr20:48807351..48807384,+!p1@CEBPB!0.55!334.47!CEBPB;;chr1:59249707..59249727,-!p1@JUN!0.55!136.58!JUN;;chr2:19558373..19558392,-!p1@OSR1!0.55!8.26!OSR1;;chr9:102584159..102584174,+!p2@NR4A3!0.55!5.26!NR4A3;;chr9:4299979..4299996,-!p3@GLIS3!0.55!4.66!GLIS3;;chr17:46687959..46688007,-!p2@HOXB7!0.55!3.76!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr2:176994408..176994492,+!p1@HOXD8!0.55!2.55!HOXD8;;chr3:25469815..25469866,+!p3@RARB!0.55!2.55!RARB;;chr19:16435625..16435682,+!p1@KLF2!0.54!102.78!KLF2;;chr10:77161504..77161530,-!p1@ZNF503!0.54!41.77!ZNF503;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.43!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.54!12.77!DRAP1;;chr5:92918894..92918912,+!p2@NR2F1!0.54!9.77!NR2F1;;chr18:19749517..19749531,+!p3@GATA6!0.54!4.96!GATA6;;chr19:20011775..20011800,+!p2@ZNF93!0.54!4.96!ZNF93;;chr12:80085255..80085284,-!p9@PAWR!0.54!3.91!PAWR;;chr2:8822176..8822196,+!p1@ID2!0.53!439.80!ID2;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.40!HOXA2;;chr1:8934931..8934947,-!p4@ENO1!0.52!9.47!ENO1;;chr8:116681123..116681143,-!p4@TRPS1!0.52!5.26!TRPS1;;chr19:50431973..50431998,+!p5@ATF5!0.52!3.16!ATF5;;chr11:120107344..120107351,+!p1@POU2F3!0.52!3.01!POU2F3;;chr3:5021113..5021180,+!p1@BHLHE40!0.51!207.51!BHLHE40;;chr3:101568349..101568365,+!p1@NFKBIZ!0.51!155.37!NFKBIZ;;chr17:46655730..46655791,-!p1@HOXB4!0.51!6.76!HOXB4;;chr8:116681108..116681120,-!p9@TRPS1!0.51!3.01!TRPS1;;chr5:92918956..92918969,+!p4@NR2F1!0.51!2.55!NR2F1;;chr7:27170042..27170064,-!p4@HOXA4!0.51!2.25!HOXA4;;chr16:86612320..86612394,+!p1@FOXL1!0.51!2.25!FOXL1;;chr15:37392724..37392757,-!p1@MEIS2!0.50!12.62!MEIS2;;chr7:150945754..150945789,-!p2@SMARCD3!0.50!8.26!SMARCD3;;chr1:200379104..200379128,-!p2@ZNF281!0.50!6.46!ZNF281;;chr1:151032922..151032951,+!p2@MLLT11!0.50!4.06!MLLT11;;chr12:80084279..80084293,-!p8@PAWR!0.50!4.06!PAWR;;chr10:77161650..77161661,-!p4@ZNF503!0.50!3.31!ZNF503;;chr5:137801160..137801176,+!p1@EGR1!0.49!283.24!EGR1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.49!27.20!LRRFIP1;;chr9:102584262..102584276,+!p1@NR4A3!0.49!5.56!NR4A3;;chr17:20492136..20492165,+!p1@MEIS3P2!0.49!3.76!MEIS3P2;;chr6:126240442..126240459,+!p4@NCOA7!0.49!2.85!NCOA7;;chr6:45296048..45296082,+!p1@RUNX2!0.49!2.55!RUNX2;;chr16:88519743..88519754,+!p2@ZFPM1!0.49!2.40!ZFPM1;;chr7:28449015..28449024,+!p6@CREB5!0.49!2.10!CREB5;;chr8:93115584..93115642,-!p5@RUNX1T1!0.49!2.10!RUNX1T1;;chr21:36421347..36421380,-!p8@RUNX1!0.49!2.10!RUNX1;;chr11:65687362..65687436,+!p3@DRAP1!0.48!12.02!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.48!6.76!HMGA2;;chr3:5021191..5021202,+!p3@BHLHE40!0.48!6.76!BHLHE40;;chr12:48298765..48298783,-!p2@VDR!0.48!5.11!VDR;;chr6:43140149..43140177,+!p8@SRF!0.48!2.25!SRF;;chr10:22292613..22292674,-!p1@DNAJC1!0.47!79.19!DNAJC1;;chrX:128657457..128657475,-!p1@SMARCA1!0.47!30.80!SMARCA1;;chr7:17338239..17338262,+!p2@AHR!0.47!19.53!AHR;;chr21:36259445..36259519,-!p4@RUNX1!0.47!6.91!RUNX1;;chr5:139487608..139487663,+!p3@PURA!0.47!5.11!PURA;;chr3:25469724..25469773,+!p1@RARB!0.47!3.16!RARB;;chr2:113994526..113994556,-!p3@PAX8!0.47!1.95!PAX8;;chr5:121465234..121465263,+!p1@ZNF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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor3.CNhs12378.11762-123H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor3.CNhs12378.11762-123H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor3.CNhs12378.11762-123H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor3.CNhs12378.11762-123H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor3.CNhs12378.11762-123H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11762-123H7
 |is_a=EFO:0002091;;FF:0000274
 |is_obsolete=
+|library_id=CNhs12378
+|library_id_phase_based=2:CNhs12378
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11762
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11762
 |name=mesenchymal precursor cell - ovarian cancer metastasis, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12378,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=123
@@ Line 62: / Line 78: @@
 |rna_weight_ug=51.22095
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 83: / Line 100: @@
 |top_motifs=TAL1_TCF{3,4,12}:1.87361359991;HSF1,2:1.79600822895;HOX{A5,B5}:1.7862154745;GLI1..3:1.76558519414;GZF1:1.64673745846;NKX3-1:1.60383645957;HMGA1,2:1.54000105137;HIF1A:1.30933597337;NR6A1:1.23892799555;ESR1:1.23715053635;SMAD1..7,9:1.16858227478;ZIC1..3:1.13181973822;TEF:1.10184817833;GCM1,2:1.08049959722;ZNF238:1.07409800999;XBP1:1.06482449881;EVI1:1.04711708468;SRF:1.01560798921;TEAD1:0.984736590505;ATF6:0.983735351394;RXRA_VDR{dimer}:0.982530160643;ZNF423:0.943882230693;MYBL2:0.833987673951;UFEwm:0.828942117219;AIRE:0.822457103406;PAX4:0.795384539171;XCPE1{core}:0.78123410908;MAFB:0.780811360887;MAZ:0.780704851629;EN1,2:0.767389306852;IKZF1:0.754872259013;PAX5:0.754069055576;ONECUT1,2:0.753608988945;EBF1:0.745854287615;NKX3-2:0.738723469913;NFATC1..3:0.735930939721;NR3C1:0.724104624403;TFCP2:0.716764050535;RFX1:0.704990748938;RXR{A,B,G}:0.683707374751;NFE2L2:0.678578295686;GTF2I:0.675529656356;ZNF148:0.654307261139;DBP:0.653974602733;ZNF384:0.645900941603;PRDM1:0.64320553957;TLX1..3_NFIC{dimer}:0.599254193854;FOXM1:0.592996268092;GTF2A1,2:0.584563591546;TBP:0.583590733281;NKX2-1,4:0.53824054591;ZBTB6:0.52253378054;HMX1:0.517953139981;NFIX:0.517167557771;MZF1:0.50867618898;HOX{A4,D4}:0.507522093455;PAX6:0.506014267826;TP53:0.496868682962;ALX4:0.466794716447;BACH2:0.446163878189;SP1:0.432851628011;PAX1,9:0.428220838874;HLF:0.426833814893;FOS_FOS{B,L1}_JUN{B,D}:0.426264270148;NFE2L1:0.370721337675;TBX4,5:0.340641197761;STAT2,4,6:0.323463074287;LHX3,4:0.31725072662;PATZ1:0.309340779579;ZBTB16:0.307520160878;PPARG:0.298191002312;ALX1:0.295407518901;TLX2:0.285867061798;MTE{core}:0.284086976786;EP300:0.281631889435;TFAP2B:0.234271425829;GATA4:0.234197169991;NR1H4:0.228757269146;KLF4:0.228721177418;CRX:0.227323597459;TFAP4:0.226457190324;NFE2:0.22500703029;NANOG{mouse}:0.21601374047;ARID5B:0.209755193838;PBX1:0.200470774771;POU6F1:0.185160807788;PAX2:0.182109764994;HES1:0.179482035849;ATF2:0.178653713867;NFIL3:0.171605454102;RREB1:0.153706052607;NFKB1_REL_RELA:0.143894639452;EGR1..3:0.134646150567;SOX17:0.126356070586;HBP1_HMGB_SSRP1_UBTF:0.11456517203;FOX{I1,J2}:0.0977705504758;FOSL2:0.0924515558384;HNF1A:0.0920279516369;RUNX1..3:0.0798909160434;JUN:0.0760287430456;PAX8:0.0759353256836;CDX1,2,4:0.0622939245404;HIC1:0.0527114940913;ADNP_IRX_SIX_ZHX:0.0444334997628;SPZ1:0.0214955335615;PAX3,7:0.00257930691559;REST:0.00221700768693;AR:0.0014222826909;TOPORS:-0.0121816757369;GFI1B:-0.0130253340659;AHR_ARNT_ARNT2:-0.0178270039517;SREBF1,2:-0.0289555157864;NHLH1,2:-0.0535207540735;FOXP3:-0.0730375725975;bHLH_family:-0.0893443448047;CDC5L:-0.0923157210833;IRF7:-0.0985079020335;ELK1,4_GABP{A,B1}:-0.102759607277;IRF1,2:-0.109505229978;STAT5{A,B}:-0.124650390254;HAND1,2:-0.127879568867;STAT1,3:-0.128693161566;MEF2{A,B,C,D}:-0.129234945458;TFAP2{A,C}:-0.153767727024;CREB1:-0.153912610476;GATA6:-0.168828627079;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.173326807474;FOX{D1,D2}:-0.195944106247;LEF1_TCF7_TCF7L1,2:-0.206525963942;SOX2:-0.229608538201;NKX2-3_NKX2-5:-0.23119663055;POU5F1:-0.233335350082;HOXA9_MEIS1:-0.275151362581;CEBPA,B_DDIT3:-0.277058578782;MYFfamily:-0.282097450766;ZFP161:-0.300285603762;POU3F1..4:-0.321909069667;LMO2:-0.321971662029;MTF1:-0.331647171311;HNF4A_NR2F1,2:-0.340229655958;RFX2..5_RFXANK_RFXAP:-0.376395879788;NKX6-1,2:-0.387886417583;ESRRA:-0.393355358975;ATF5_CREB3:-0.40139649974;NRF1:-0.406185483885;FOXA2:-0.411241500452;MED-1{core}:-0.41499711731;DMAP1_NCOR{1,2}_SMARC:-0.415551035774;FOXL1:-0.423703302085;SNAI1..3:-0.434597667821;ZNF143:-0.43533341172;ETS1,2:-0.444440566562;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.485704598824;NANOG:-0.501557126628;TGIF1:-0.51368321513;POU2F1..3:-0.52921139317;SPI1:-0.538791879908;POU1F1:-0.554066058716;ELF1,2,4:-0.560995284386;FOXP1:-0.562169914801;FOXD3:-0.576691363451;SOX5:-0.603875761611;FOXQ1:-0.604698402185;ZEB1:-0.605948806281;RBPJ:-0.631813430434;FOXO1,3,4:-0.656198450252;MYOD1:-0.659087755608;ATF4:-0.660086409524;PRRX1,2:-0.667506435648;NKX2-2,8:-0.680507880534;NR5A1,2:-0.68733187043;FOXN1:-0.708063299593;E2F1..5:-0.711303316675;YY1:-0.72760481009;SPIB:-0.737520663563;IKZF2:-0.747381391267;MYB:-0.757862441225;GFI1:-0.801795268205;RORA:-0.814335328293;FOX{F1,F2,J1}:-0.826769491073;TFDP1:-0.860154664913;NFY{A,B,C}:-0.887445973516;BPTF:-0.92144964124;OCT4_SOX2{dimer}:-0.935642334216;CUX2:-0.981050018383;VSX1,2:-1.02885121659;SOX{8,9,10}:-1.09714254267;T:-1.19458675834;BREu{core}:-1.21231500928;PDX1:-1.32873893517;HOX{A6,A7,B6,B7}:-1.34599925113;PITX1..3:-1.57958536787
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11762-123H7;search_select_hide=table117:FF:11762-123H7
 }}

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FF:11762-123H7: Difference between revisions

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Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0