FF:11765-123I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005341 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008577;DRR009449;DRZ000874;DRZ002259;DRZ012224;DRZ013609 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!2.03!282.85!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.97!103.99!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.90!78.57!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.80!80.42!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.79!161.76!OSR1;;chr10:28034739..28034756,-!p1@MKX!1.71!50.84!MKX;;chr2:45236540..45236577,-!p1@SIX2!1.67!45.29!SIX2;;chr20:39317868..39317884,-!p1@MAFB!1.66!503.31!MAFB;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.61!40.21!HOXC5;;chr7:15726296..15726315,-!p1@MEOX2!1.51!31.43!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.49!43.44!NFIX;;chr7:44143925..44143970,+!p1@AEBP1!1.48!617.93!AEBP1;;chr5:158526917..158526932,-!p1@EBF1!1.44!64.70!EBF1;;chr16:79634624..79634642,-!p1@MAF!1.43!99.37!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.43!41.60!FOXQ1;;chr7:44143978..44143989,+!p2@AEBP1!1.37!40.21!AEBP1;;chr14:95236440..95236465,-!p1@GSC!1.37!22.18!GSC;;chr14:24837368..24837401,+!p1@NFATC4!1.35!49.91!NFATC4;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.97!PITX1;;chr1:23696448..23696453,-!p5@ZNF436!1.31!23.57!ZNF436;;chr7:19157043..19157088,-!p2@TWIST1!1.30!46.68!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.30!25.88!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.51!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.28!18.02!BARX1;;chr14:61116183..61116208,-!p1@SIX1!1.24!61.47!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.23!16.18!PAX9;;chr7:44143997..44144008,+!p3@AEBP1!1.22!19.87!AEBP1;;chr17:48072574..48072597,-!p1@DLX3!1.22!15.71!DLX3;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.10!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.20!16.18!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.20!14.79!PRRX1;;chr7:15726243..15726293,-!p2@MEOX2!1.20!14.79!MEOX2;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.33!PITX1;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.87!HOXC10;;chr2:45236579..45236596,-!p2@SIX2!1.16!13.40!SIX2;;chr4:174451370..174451387,-!p1@HAND2!1.16!13.40!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.13!22.18!TBX18;;chr6:1610293..1610310,+!p1@FOXC1!1.13!20.80!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!1.13!17.10!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.28!TWIST2;;chr8:99956662..99956684,+!p1@OSR2!1.12!18.95!OSR2;;chr1:23696348..23696363,-!p4@ZNF436!1.12!13.87!ZNF436;;chr8:49833948..49833973,-!p2@SNAI2!1.11!74.87!SNAI2;;chr12:53614115..53614154,-!p1@RARG!1.11!63.32!RARG;;chr16:79633894..79633954,-!p3@MAF!1.11!23.11!MAF;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.11!12.02!HOXC5;;chr5:321810..321877,+!p1@AHRR!1.10!36.97!AHRR;;chr1:158969752..158969780,+!p6@IFI16!1.10!20.34!IFI16;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.56!IRX3;;chr8:49833978..49833996,-!p1@SNAI2!1.08!228.31!SNAI2;;chr16:79634595..79634620,-!p2@MAF!1.08!20.34!MAF;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.33!IRX3;;chr21:39821025..39821046,-!p9@ERG!1.08!11.09!ERG;;chr12:54380404..54380433,+!p3@HOXC10!1.08!11.09!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.07!12.48!RUNX2;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.63!HOXC9;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.56!TCF12;;chr21:36421535..36421610,-!p2@RUNX1!1.05!36.51!RUNX1;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.17!HOXD8;;chr18:22932080..22932170,-!p1@ZNF521!1.04!42.52!ZNF521;;chr10:63809013..63809041,+!p3@ARID5B!1.02!53.15!ARID5B;;chr3:157823517..157823562,-!p1@SHOX2!1.02!10.17!SHOX2;;chr1:23696308..23696339,-!p2@ZNF436!1.01!19.87!ZNF436;;chr1:170632250..170632277,+!p7@PRRX1!1.01!9.24!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.24!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.24!HOXA3;;chr2:177001290..177001315,+!p1@HOXD3!1.01!9.24!HOXD3;;chr2:102091566..102091581,-!p1@RFX8!0.99!8.78!RFX8;;chr14:95236551..95236576,-!p2@GSC!0.99!8.78!GSC;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.32!ZNF385D;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.32!PRRX1;;chr5:158527104..158527135,-!p4@EBF1!0.97!8.32!EBF1;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.00!GLIS3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.96!8.78!GLIS1;;chr6:19837592..19837621,+!p1@ID4!0.95!50.38!ID4;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.44!ARID5B;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.86!EMX2;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.86!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.95!7.86!HOXA11;;chr15:66994663..66994680,+!p1@SMAD6!0.93!18.49!SMAD6;;chr3:42695180..42695201,+!p2@ZBTB47!0.92!7.39!ZBTB47;;chr1:170632115..170632136,+!p9@PRRX1!0.92!7.39!PRRX1;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.17!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.89!1229.85!ID3;;chr2:239756739..239756755,+!p2@TWIST2!0.89!12.02!TWIST2;;chr1:23694556..23694584,-!p6@ZNF436!0.89!8.78!ZNF436;;chr8:116681409..116681431,-!p2@TRPS1!0.87!18.49!TRPS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.87!11.09!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.47!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.87!6.47!PRRX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.86!76.72!PLAGL1;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.01!HOXA9;;chr1:170632310..170632321,+!p15@PRRX1!0.85!6.01!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.85!6.01!ZNF668;;chr11:125034640..125034655,+!p1@PKNOX2!0.85!6.01!PKNOX2;;chr12:54402745..54402788,+!p1@HOXC8!0.85!6.01!HOXC8;;chr14:37126765..37126799,+!p2@PAX9!0.85!6.01!PAX9;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.84!10.17!MEIS3P1;;chr12:53625966..53626012,-!p2@RARG!0.83!16.18!RARG;;chr20:51588873..51588953,+!p1@TSHZ2!0.83!7.86!TSHZ2;;chr8:48650715..48650735,-!p1@CEBPD!0.82!762.59!CEBPD;;chr7:27196267..27196311,-!p1@HOXA7!0.82!5.55!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.55!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.82!5.55!HOXA11;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.55!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.82!5.55!LHX9;;chr9:96717678..96717689,-!p2@BARX1!0.82!5.55!BARX1;;chr9:130966497..130966541,-!p4@CIZ1!0.82!5.55!CIZ1;;chr10:63809106..63809127,+!p1@ARID5B!0.81!80.42!ARID5B;;chr19:13106214..13106382,+!p1@NFIX!0.80!134.03!NFIX;;chr19:33793430..33793447,-!p1@CEBPA!0.80!24.03!CEBPA;;chr2:191878874..191878938,-!p1@STAT1!0.79!304.57!STAT1;;chr19:47922750..47922795,-!p1@MEIS3!0.79!8.78!MEIS3;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.93!NFIX;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.47!BNC2;;chr10:31607702..31607755,+!p3@ZEB1!0.79!6.01!ZEB1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.78!55.00!GLIS2;;chr13:37494365..37494381,-!p1@SMAD9!0.78!9.24!SMAD9;;chr19:13136241..13136258,+!p7@NFIX!0.78!6.93!NFIX;;chr1:170633194..170633205,+!p18@PRRX1!0.78!5.08!PRRX1;;chr3:157824001..157824078,-!p2@SHOX2!0.78!5.08!SHOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.77!5.55!ZNF385D;;chr3:187463179..187463201,-!p2@BCL6!0.76!21.26!BCL6;;chr2:46612334..46612349,+!p6@EPAS1!0.76!6.47!EPAS1;;chr17:1958388..1958404,+!p1@HIC1!0.75!32.35!HIC1;;chr2:27357446..27357475,-!p2@PREB!0.75!17.56!PREB;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.71!TBX2;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.86!ATOH8;;chr6:36355513..36355578,-!p2@ETV7!0.75!6.01!ETV7;;chr7:15726220..15726236,-!p4@MEOX2!0.75!4.62!MEOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.62!HOXA9;;chr10:131762504..131762555,-!p1@EBF3!0.75!4.62!EBF3;;chr12:54394309..54394336,+!p2@HOXC9!0.75!4.62!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.75!4.62!HOXC5;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.62!NFIX;;chr12:54694758..54694805,-!p1@NFE2!0.74!5.55!NFE2;;chr15:66994615..66994630,+!p3@SMAD6!0.73!6.47!SMAD6;;chr4:26322267..26322334,+!p3@RBPJ!0.72!11.09!RBPJ;;chr15:66994561..66994597,+!p2@SMAD6!0.71!10.63!SMAD6;;chr19:13134457..13134462,+!p5@NFIX!0.71!7.86!NFIX;;chr16:54320280..54320291,-!p9@IRX3!0.71!4.16!IRX3;;chr17:59529743..59529798,+!p1@TBX4!0.71!4.16!TBX4;;chr2:102091144..102091183,-!p2@RFX8!0.71!4.16!RFX8;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.16!EBF2;;chr10:31610110..31610159,+!p2@ZEB1!0.71!4.16!ZEB1;;chr12:54379029..54379057,+!p2@HOXC10!0.71!4.16!HOXC10;;chr2:28618532..28618610,+!p4@FOSL2!0.70!7.39!FOSL2;;chr16:54320158..54320200,-!p5@IRX3!0.70!6.01!IRX3;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.55!EBF1;;chr1:6684918..6684936,+!p2@THAP3!0.70!5.08!THAP3;;chr8:37553292..37553317,+!p1@ZNF703!0.68!103.99!ZNF703;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!30.97!ZMAT3;;chr10:63809077..63809089,+!p5@ARID5B!0.67!8.78!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.62!TBX18;;chr7:1577111..1577132,+!p4@MAFK!0.67!4.16!MAFK;;chr5:158527139..158527161,-!p5@EBF1!0.67!3.70!EBF1;;chr6:1389989..1390019,+!p2@FOXF2!0.67!3.70!FOXF2;;chr7:27239740..27239759,-!p2@HOXA13!0.67!3.70!HOXA13;;chr8:93074803..93074845,-!p1@RUNX1T1!0.67!3.70!RUNX1T1;;chr10:28032421..28032494,-!p2@MKX!0.67!3.70!MKX;;chr10:28035112..28035130,-!p5@MKX!0.67!3.70!MKX;;chr10:28035133..28035148,-!p3@MKX!0.67!3.70!MKX;;chr10:31607811..31607837,+!p6@ZEB1!0.67!3.70!ZEB1;;chr4:26323764..26323821,+!p15@RBPJ!0.67!3.70!RBPJ;;chr21:36421347..36421380,-!p8@RUNX1!0.67!3.70!RUNX1;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.16!NPAS2;;chr12:56753869..56753930,-!p1@STAT2!0.65!179.32!STAT2;;chr6:21593973..21593988,+!p1@SOX4!0.65!145.59!SOX4;;chr9:73028814..73028895,-!p1@KLF9!0.65!39.75!KLF9;;chr16:54320675..54320715,-!p1@IRX3!0.65!8.32!IRX3;;chr9:4299979..4299996,-!p3@GLIS3!0.65!6.01!GLIS3;;chr18:3451646..3451691,+!p3@TGIF1!0.64!10.17!TGIF1;;chr14:62203595..62203676,+!p4@HIF1A!0.64!6.93!HIF1A;;chr6:1612248..1612281,+!p2@FOXC1!0.64!3.70!FOXC1;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.97!HIF1A;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.10!DRAP1;;chr3:71630980..71631110,-!p3@FOXP1!0.63!12.94!FOXP1;;chr1:158979872..158979898,+!p3@IFI16!0.63!11.55!IFI16;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.24!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.63!3.24!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.24!CREB3L1;;chr7:15726064..15726103,-!p8@MEOX2!0.63!3.24!MEOX2;;chr7:15726176..15726191,-!p3@MEOX2!0.63!3.24!MEOX2;;chr7:96654026..96654061,-!p2@DLX5!0.63!3.24!DLX5;;chr8:93115584..93115642,-!p5@RUNX1T1!0.63!3.24!RUNX1T1;;chr2:177001268..177001287,+!p3@HOXD3!0.63!3.24!HOXD3;;chr6:21597765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| |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!2.03!282.85!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.97!103.99!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.90!78.57!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.80!80.42!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.79!161.76!OSR1;;chr10:28034739..28034756,-!p1@MKX!1.71!50.84!MKX;;chr2:45236540..45236577,-!p1@SIX2!1.67!45.29!SIX2;;chr20:39317868..39317884,-!p1@MAFB!1.66!503.31!MAFB;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.61!40.21!HOXC5;;chr7:15726296..15726315,-!p1@MEOX2!1.51!31.43!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.49!43.44!NFIX;;chr7:44143925..44143970,+!p1@AEBP1!1.48!617.93!AEBP1;;chr5:158526917..158526932,-!p1@EBF1!1.44!64.70!EBF1;;chr16:79634624..79634642,-!p1@MAF!1.43!99.37!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.43!41.60!FOXQ1;;chr7:44143978..44143989,+!p2@AEBP1!1.37!40.21!AEBP1;;chr14:95236440..95236465,-!p1@GSC!1.37!22.18!GSC;;chr14:24837368..24837401,+!p1@NFATC4!1.35!49.91!NFATC4;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.97!PITX1;;chr1:23696448..23696453,-!p5@ZNF436!1.31!23.57!ZNF436;;chr7:19157043..19157088,-!p2@TWIST1!1.30!46.68!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.30!25.88!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.51!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.28!18.02!BARX1;;chr14:61116183..61116208,-!p1@SIX1!1.24!61.47!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.23!16.18!PAX9;;chr7:44143997..44144008,+!p3@AEBP1!1.22!19.87!AEBP1;;chr17:48072574..48072597,-!p1@DLX3!1.22!15.71!DLX3;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.10!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.20!16.18!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.20!14.79!PRRX1;;chr7:15726243..15726293,-!p2@MEOX2!1.20!14.79!MEOX2;;chr5:134369879..134369898,-!p2@PITX1!1.19!14.33!PITX1;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.87!HOXC10;;chr2:45236579..45236596,-!p2@SIX2!1.16!13.40!SIX2;;chr4:174451370..174451387,-!p1@HAND2!1.16!13.40!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.13!22.18!TBX18;;chr6:1610293..1610310,+!p1@FOXC1!1.13!20.80!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!1.13!17.10!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.28!TWIST2;;chr8:99956662..99956684,+!p1@OSR2!1.12!18.95!OSR2;;chr1:23696348..23696363,-!p4@ZNF436!1.12!13.87!ZNF436;;chr8:49833948..49833973,-!p2@SNAI2!1.11!74.87!SNAI2;;chr12:53614115..53614154,-!p1@RARG!1.11!63.32!RARG;;chr16:79633894..79633954,-!p3@MAF!1.11!23.11!MAF;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.11!12.02!HOXC5;;chr5:321810..321877,+!p1@AHRR!1.10!36.97!AHRR;;chr1:158969752..158969780,+!p6@IFI16!1.10!20.34!IFI16;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.56!IRX3;;chr8:49833978..49833996,-!p1@SNAI2!1.08!228.31!SNAI2;;chr16:79634595..79634620,-!p2@MAF!1.08!20.34!MAF;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.33!IRX3;;chr21:39821025..39821046,-!p9@ERG!1.08!11.09!ERG;;chr12:54380404..54380433,+!p3@HOXC10!1.08!11.09!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.07!12.48!RUNX2;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.63!HOXC9;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.56!TCF12;;chr21:36421535..36421610,-!p2@RUNX1!1.05!36.51!RUNX1;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.17!HOXD8;;chr18:22932080..22932170,-!p1@ZNF521!1.04!42.52!ZNF521;;chr10:63809013..63809041,+!p3@ARID5B!1.02!53.15!ARID5B;;chr3:157823517..157823562,-!p1@SHOX2!1.02!10.17!SHOX2;;chr1:23696308..23696339,-!p2@ZNF436!1.01!19.87!ZNF436;;chr1:170632250..170632277,+!p7@PRRX1!1.01!9.24!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.24!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.24!HOXA3;;chr2:177001290..177001315,+!p1@HOXD3!1.01!9.24!HOXD3;;chr2:102091566..102091581,-!p1@RFX8!0.99!8.78!RFX8;;chr14:95236551..95236576,-!p2@GSC!0.99!8.78!GSC;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.32!ZNF385D;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.32!PRRX1;;chr5:158527104..158527135,-!p4@EBF1!0.97!8.32!EBF1;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.00!GLIS3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.96!8.78!GLIS1;;chr6:19837592..19837621,+!p1@ID4!0.95!50.38!ID4;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.44!ARID5B;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.86!EMX2;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.86!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.95!7.86!HOXA11;;chr15:66994663..66994680,+!p1@SMAD6!0.93!18.49!SMAD6;;chr3:42695180..42695201,+!p2@ZBTB47!0.92!7.39!ZBTB47;;chr1:170632115..170632136,+!p9@PRRX1!0.92!7.39!PRRX1;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.17!IRX3;;chr1:23885981..23886002,-!p1@ID3!0.89!1229.85!ID3;;chr2:239756739..239756755,+!p2@TWIST2!0.89!12.02!TWIST2;;chr1:23694556..23694584,-!p6@ZNF436!0.89!8.78!ZNF436;;chr8:116681409..116681431,-!p2@TRPS1!0.87!18.49!TRPS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.87!11.09!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.47!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.87!6.47!PRRX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.86!76.72!PLAGL1;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.01!HOXA9;;chr1:170632310..170632321,+!p15@PRRX1!0.85!6.01!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.85!6.01!ZNF668;;chr11:125034640..125034655,+!p1@PKNOX2!0.85!6.01!PKNOX2;;chr12:54402745..54402788,+!p1@HOXC8!0.85!6.01!HOXC8;;chr14:37126765..37126799,+!p2@PAX9!0.85!6.01!PAX9;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.84!10.17!MEIS3P1;;chr12:53625966..53626012,-!p2@RARG!0.83!16.18!RARG;;chr20:51588873..51588953,+!p1@TSHZ2!0.83!7.86!TSHZ2;;chr8:48650715..48650735,-!p1@CEBPD!0.82!762.59!CEBPD;;chr7:27196267..27196311,-!p1@HOXA7!0.82!5.55!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.55!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.82!5.55!HOXA11;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.55!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.82!5.55!LHX9;;chr9:96717678..96717689,-!p2@BARX1!0.82!5.55!BARX1;;chr9:130966497..130966541,-!p4@CIZ1!0.82!5.55!CIZ1;;chr10:63809106..63809127,+!p1@ARID5B!0.81!80.42!ARID5B;;chr19:13106214..13106382,+!p1@NFIX!0.80!134.03!NFIX;;chr19:33793430..33793447,-!p1@CEBPA!0.80!24.03!CEBPA;;chr2:191878874..191878938,-!p1@STAT1!0.79!304.57!STAT1;;chr19:47922750..47922795,-!p1@MEIS3!0.79!8.78!MEIS3;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.93!NFIX;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.47!BNC2;;chr10:31607702..31607755,+!p3@ZEB1!0.79!6.01!ZEB1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.78!55.00!GLIS2;;chr13:37494365..37494381,-!p1@SMAD9!0.78!9.24!SMAD9;;chr19:13136241..13136258,+!p7@NFIX!0.78!6.93!NFIX;;chr1:170633194..170633205,+!p18@PRRX1!0.78!5.08!PRRX1;;chr3:157824001..157824078,-!p2@SHOX2!0.78!5.08!SHOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.77!5.55!ZNF385D;;chr3:187463179..187463201,-!p2@BCL6!0.76!21.26!BCL6;;chr2:46612334..46612349,+!p6@EPAS1!0.76!6.47!EPAS1;;chr17:1958388..1958404,+!p1@HIC1!0.75!32.35!HIC1;;chr2:27357446..27357475,-!p2@PREB!0.75!17.56!PREB;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.71!TBX2;;chr2:85980951..85981004,+!p1@ATOH8!0.75!7.86!ATOH8;;chr6:36355513..36355578,-!p2@ETV7!0.75!6.01!ETV7;;chr7:15726220..15726236,-!p4@MEOX2!0.75!4.62!MEOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.62!HOXA9;;chr10:131762504..131762555,-!p1@EBF3!0.75!4.62!EBF3;;chr12:54394309..54394336,+!p2@HOXC9!0.75!4.62!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.75!4.62!HOXC5;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.62!NFIX;;chr12:54694758..54694805,-!p1@NFE2!0.74!5.55!NFE2;;chr15:66994615..66994630,+!p3@SMAD6!0.73!6.47!SMAD6;;chr4:26322267..26322334,+!p3@RBPJ!0.72!11.09!RBPJ;;chr15:66994561..66994597,+!p2@SMAD6!0.71!10.63!SMAD6;;chr19:13134457..13134462,+!p5@NFIX!0.71!7.86!NFIX;;chr16:54320280..54320291,-!p9@IRX3!0.71!4.16!IRX3;;chr17:59529743..59529798,+!p1@TBX4!0.71!4.16!TBX4;;chr2:102091144..102091183,-!p2@RFX8!0.71!4.16!RFX8;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.16!EBF2;;chr10:31610110..31610159,+!p2@ZEB1!0.71!4.16!ZEB1;;chr12:54379029..54379057,+!p2@HOXC10!0.71!4.16!HOXC10;;chr2:28618532..28618610,+!p4@FOSL2!0.70!7.39!FOSL2;;chr16:54320158..54320200,-!p5@IRX3!0.70!6.01!IRX3;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.55!EBF1;;chr1:6684918..6684936,+!p2@THAP3!0.70!5.08!THAP3;;chr8:37553292..37553317,+!p1@ZNF703!0.68!103.99!ZNF703;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!30.97!ZMAT3;;chr10:63809077..63809089,+!p5@ARID5B!0.67!8.78!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.62!TBX18;;chr7:1577111..1577132,+!p4@MAFK!0.67!4.16!MAFK;;chr5:158527139..158527161,-!p5@EBF1!0.67!3.70!EBF1;;chr6:1389989..1390019,+!p2@FOXF2!0.67!3.70!FOXF2;;chr7:27239740..27239759,-!p2@HOXA13!0.67!3.70!HOXA13;;chr8:93074803..93074845,-!p1@RUNX1T1!0.67!3.70!RUNX1T1;;chr10:28032421..28032494,-!p2@MKX!0.67!3.70!MKX;;chr10:28035112..28035130,-!p5@MKX!0.67!3.70!MKX;;chr10:28035133..28035148,-!p3@MKX!0.67!3.70!MKX;;chr10:31607811..31607837,+!p6@ZEB1!0.67!3.70!ZEB1;;chr4:26323764..26323821,+!p15@RBPJ!0.67!3.70!RBPJ;;chr21:36421347..36421380,-!p8@RUNX1!0.67!3.70!RUNX1;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.16!NPAS2;;chr12:56753869..56753930,-!p1@STAT2!0.65!179.32!STAT2;;chr6:21593973..21593988,+!p1@SOX4!0.65!145.59!SOX4;;chr9:73028814..73028895,-!p1@KLF9!0.65!39.75!KLF9;;chr16:54320675..54320715,-!p1@IRX3!0.65!8.32!IRX3;;chr9:4299979..4299996,-!p3@GLIS3!0.65!6.01!GLIS3;;chr18:3451646..3451691,+!p3@TGIF1!0.64!10.17!TGIF1;;chr14:62203595..62203676,+!p4@HIF1A!0.64!6.93!HIF1A;;chr6:1612248..1612281,+!p2@FOXC1!0.64!3.70!FOXC1;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.97!HIF1A;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.10!DRAP1;;chr3:71630980..71631110,-!p3@FOXP1!0.63!12.94!FOXP1;;chr1:158979872..158979898,+!p3@IFI16!0.63!11.55!IFI16;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.24!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.63!3.24!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.24!CREB3L1;;chr7:15726064..15726103,-!p8@MEOX2!0.63!3.24!MEOX2;;chr7:15726176..15726191,-!p3@MEOX2!0.63!3.24!MEOX2;;chr7:96654026..96654061,-!p2@DLX5!0.63!3.24!DLX5;;chr8:93115584..93115642,-!p5@RUNX1T1!0.63!3.24!RUNX1T1;;chr2:177001268..177001287,+!p3@HOXD3!0.63!3.24!HOXD3;;chr6:21597765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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000388;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11765-123I1 | |id=FF:11765-123I1 | ||
|is_a=EFO:0002091;;FF:0000280 | |is_a=EFO:0002091;;FF:0000280 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12640 | |||
|library_id_phase_based=2:CNhs12640 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11765 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11765 | |||
|name=tenocyte, donor2 | |name=tenocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12640,LSID952,release012,COMPLETED | |profile_hcage=CNhs12640,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=12.95625 | |rna_weight_ug=12.95625 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613 | |top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11765-123I1;search_select_hide=table117:FF:11765-123I1 | |||
}} | }} | ||
Latest revision as of 18:18, 4 June 2020
| Name: | tenocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12640 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12640
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12640
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.745 |
| 10 | 10 | 0.837 |
| 100 | 100 | 0.945 |
| 101 | 101 | 0.325 |
| 102 | 102 | 0.0335 |
| 103 | 103 | 0.368 |
| 104 | 104 | 0.918 |
| 105 | 105 | 0.0723 |
| 106 | 106 | 0.464 |
| 107 | 107 | 0.112 |
| 108 | 108 | 0.396 |
| 109 | 109 | 0.47 |
| 11 | 11 | 0.603 |
| 110 | 110 | 0.418 |
| 111 | 111 | 0.725 |
| 112 | 112 | 0.51 |
| 113 | 113 | 0.916 |
| 114 | 114 | 0.399 |
| 115 | 115 | 0.00535 |
| 116 | 116 | 0.085 |
| 117 | 117 | 0.596 |
| 118 | 118 | 0.85 |
| 119 | 119 | 0.523 |
| 12 | 12 | 0.199 |
| 120 | 120 | 0.954 |
| 121 | 121 | 0.534 |
| 122 | 122 | 0.128 |
| 123 | 123 | 0.00251 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.571 |
| 126 | 126 | 0.68 |
| 127 | 127 | 0.645 |
| 128 | 128 | 0.237 |
| 129 | 129 | 0.921 |
| 13 | 13 | 0.684 |
| 130 | 130 | 0.601 |
| 131 | 131 | 0.971 |
| 132 | 132 | 0.0761 |
| 133 | 133 | 0.419 |
| 134 | 134 | 0.605 |
| 135 | 135 | 0.759 |
| 136 | 136 | 0.545 |
| 137 | 137 | 0.631 |
| 138 | 138 | 0.491 |
| 139 | 139 | 0.715 |
| 14 | 14 | 0.677 |
| 140 | 140 | 0.565 |
| 141 | 141 | 0.296 |
| 142 | 142 | 0.907 |
| 143 | 143 | 0.964 |
| 144 | 144 | 0.0888 |
| 145 | 145 | 0.954 |
| 146 | 146 | 0.502 |
| 147 | 147 | 0.731 |
| 148 | 148 | 0.418 |
| 149 | 149 | 0.00223 |
| 15 | 15 | 0.418 |
| 150 | 150 | 0.41 |
| 151 | 151 | 0.385 |
| 152 | 152 | 0.0712 |
| 153 | 153 | 0.932 |
| 154 | 154 | 0.454 |
| 155 | 155 | 0.355 |
| 156 | 156 | 0.517 |
| 157 | 157 | 0.561 |
| 158 | 158 | 0.0125 |
| 159 | 159 | 0.495 |
| 16 | 16 | 0.0227 |
| 160 | 160 | 0.47 |
| 161 | 161 | 0.621 |
| 162 | 162 | 0.374 |
| 163 | 163 | 0.894 |
| 164 | 164 | 0.246 |
| 165 | 165 | 0.452 |
| 166 | 166 | 0.00256 |
| 167 | 167 | 0.436 |
| 168 | 168 | 0.627 |
| 169 | 169 | 0.0305 |
| 17 | 17 | 0.653 |
| 18 | 18 | 0.524 |
| 19 | 19 | 0.00265 |
| 2 | 2 | 0.155 |
| 20 | 20 | 0.49 |
| 21 | 21 | 0.0772 |
| 22 | 22 | 0.115 |
| 23 | 23 | 0.261 |
| 24 | 24 | 0.144 |
| 25 | 25 | 0.446 |
| 26 | 26 | 0.541 |
| 27 | 27 | 0.495 |
| 28 | 28 | 0.191 |
| 29 | 29 | 0.418 |
| 3 | 3 | 0.57 |
| 30 | 30 | 0.155 |
| 31 | 31 | 0.636 |
| 32 | 32 | 5.63663e-20 |
| 33 | 33 | 0.644 |
| 34 | 34 | 0.416 |
| 35 | 35 | 0.926 |
| 36 | 36 | 0.0438 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.772 |
| 39 | 39 | 0.223 |
| 4 | 4 | 0.145 |
| 40 | 40 | 0.704 |
| 41 | 41 | 0.265 |
| 42 | 42 | 0.765 |
| 43 | 43 | 0.605 |
| 44 | 44 | 0.337 |
| 45 | 45 | 0.566 |
| 46 | 46 | 0.576 |
| 47 | 47 | 0.508 |
| 48 | 48 | 0.977 |
| 49 | 49 | 0.838 |
| 5 | 5 | 0.902 |
| 50 | 50 | 0.292 |
| 51 | 51 | 0.759 |
| 52 | 52 | 0.495 |
| 53 | 53 | 0.302 |
| 54 | 54 | 0.6 |
| 55 | 55 | 0.683 |
| 56 | 56 | 0.947 |
| 57 | 57 | 0.83 |
| 58 | 58 | 0.335 |
| 59 | 59 | 0.0155 |
| 6 | 6 | 0.196 |
| 60 | 60 | 0.67 |
| 61 | 61 | 0.531 |
| 62 | 62 | 0.834 |
| 63 | 63 | 0.276 |
| 64 | 64 | 0.656 |
| 65 | 65 | 0.259 |
| 66 | 66 | 0.0714 |
| 67 | 67 | 0.802 |
| 68 | 68 | 0.662 |
| 69 | 69 | 0.456 |
| 7 | 7 | 0.208 |
| 70 | 70 | 0.111 |
| 71 | 71 | 0.933 |
| 72 | 72 | 0.549 |
| 73 | 73 | 0.0285 |
| 74 | 74 | 0.444 |
| 75 | 75 | 0.733 |
| 76 | 76 | 0.666 |
| 77 | 77 | 0.00205 |
| 78 | 78 | 0.19 |
| 79 | 79 | 1.068e-4 |
| 8 | 8 | 0.432 |
| 80 | 80 | 0.0964 |
| 81 | 81 | 0.74 |
| 82 | 82 | 0.267 |
| 83 | 83 | 0.297 |
| 84 | 84 | 0.221 |
| 85 | 85 | 0.167 |
| 86 | 86 | 0.851 |
| 87 | 87 | 0.673 |
| 88 | 88 | 0.208 |
| 89 | 89 | 0.0365 |
| 9 | 9 | 0.294 |
| 90 | 90 | 0.283 |
| 91 | 91 | 0.728 |
| 92 | 92 | 0.359 |
| 93 | 93 | 0.696 |
| 94 | 94 | 0.542 |
| 95 | 95 | 0.968 |
| 96 | 96 | 0.482 |
| 97 | 97 | 0.318 |
| 98 | 98 | 0.629 |
| 99 | 99 | 0.00656 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12640
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
