FF:11786-124B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005369 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008062;DRR008934;DRZ000359;DRZ001744;DRZ011709;DRZ013094 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000898,CL:0000895 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011122 | |||
|comment=Previously: CD4-positiveCD25-CD45RA- naive conventional T cells, donor1 | |comment=Previously: CD4-positiveCD25-CD45RA- naive conventional T cells, donor1 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13239.11786-124B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11786-124B4 | |id=FF:11786-124B4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011122 | ||
|is_obsolete= | |||
|library_id=CNhs13239 | |||
|library_id_phase_based=2:CNhs13239 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11786 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11786 | |||
|name=CD4+CD25-CD45RA- memory conventional T cells, donor1 | |name=CD4+CD25-CD45RA- memory conventional T cells, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13239,LSID1006,release012,COMPLETED | |profile_hcage=CNhs13239,LSID1006,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=0.964 | |rna_weight_ug=0.964 | ||
|sample_age=25 | |sample_age=25 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.88379041128334e-224!GO:0043227;membrane-bound organelle;3.35781627112131e-197!GO:0043231;intracellular membrane-bound organelle;9.69956148622259e-197!GO:0043226;organelle;4.28752016550211e-184!GO:0043229;intracellular organelle;2.81773323723533e-183!GO:0005737;cytoplasm;1.35631981574341e-133!GO:0044422;organelle part;7.68683734941576e-114!GO:0044446;intracellular organelle part;4.07768669754176e-112!GO:0005634;nucleus;3.61620545804424e-106!GO:0043170;macromolecule metabolic process;6.3602222464546e-102!GO:0044237;cellular metabolic process;3.38507092501239e-101!GO:0044238;primary metabolic process;1.98547725845541e-96!GO:0032991;macromolecular complex;3.98620825344055e-95!GO:0044444;cytoplasmic part;2.70866636031744e-91!GO:0030529;ribonucleoprotein complex;3.0373140236069e-88!GO:0003723;RNA binding;3.0154378889285e-80!GO:0044428;nuclear part;1.75914212011952e-78!GO:0043283;biopolymer metabolic process;7.3455312927794e-71!GO:0043233;organelle lumen;1.09114978370017e-67!GO:0031974;membrane-enclosed lumen;1.09114978370017e-67!GO:0010467;gene expression;1.19519579754403e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.96122301482501e-57!GO:0005739;mitochondrion;5.37713607540853e-55!GO:0006396;RNA processing;8.65682536980298e-54!GO:0005515;protein binding;1.78168429002878e-52!GO:0006412;translation;1.84042935052987e-52!GO:0019538;protein metabolic process;4.23836281837956e-50!GO:0005840;ribosome;1.41692787488353e-49!GO:0044267;cellular protein metabolic process;2.07045918770941e-49!GO:0031981;nuclear lumen;6.66051194438008e-49!GO:0044260;cellular macromolecule metabolic process;2.66427539830174e-48!GO:0043234;protein complex;4.11990685574705e-46!GO:0016071;mRNA metabolic process;7.08022612455898e-46!GO:0033036;macromolecule localization;9.95931035122313e-45!GO:0003735;structural constituent of ribosome;1.61599770360655e-43!GO:0003676;nucleic acid binding;2.71429461575408e-43!GO:0015031;protein transport;6.63496147359748e-42!GO:0008104;protein localization;6.30845058424602e-41!GO:0045184;establishment of protein localization;9.25896109944409e-41!GO:0009059;macromolecule biosynthetic process;2.77370916511571e-40!GO:0008380;RNA splicing;1.00694738767311e-39!GO:0044429;mitochondrial part;3.33925203604904e-39!GO:0006397;mRNA processing;1.22908240397921e-38!GO:0033279;ribosomal subunit;3.66944773371963e-38!GO:0031967;organelle envelope;5.84495732730674e-37!GO:0031090;organelle membrane;9.84410638330274e-37!GO:0031975;envelope;1.24284432643234e-36!GO:0016070;RNA metabolic process;4.86288202921896e-34!GO:0005829;cytosol;9.6701803433897e-34!GO:0006259;DNA metabolic process;6.54797608853603e-32!GO:0046907;intracellular transport;4.79771177408396e-31!GO:0009058;biosynthetic process;6.25683587056365e-31!GO:0044249;cellular biosynthetic process;7.88904661347837e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.90213712876377e-31!GO:0005654;nucleoplasm;1.72247670837743e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.86594359954992e-30!GO:0006886;intracellular protein transport;5.36326255539114e-30!GO:0005681;spliceosome;1.32828558027226e-29!GO:0016043;cellular component organization and biogenesis;1.03445553069298e-28!GO:0065003;macromolecular complex assembly;5.56755061578807e-28!GO:0044445;cytosolic part;9.41701140381973e-27!GO:0006512;ubiquitin cycle;2.16699822521088e-25!GO:0005740;mitochondrial envelope;1.19616370986421e-24!GO:0044451;nucleoplasm part;1.34939428401291e-24!GO:0022607;cellular component assembly;1.55652095485782e-24!GO:0031966;mitochondrial membrane;2.95555546173308e-24!GO:0019866;organelle inner membrane;5.70045268403602e-24!GO:0000166;nucleotide binding;1.00760096777414e-23!GO:0006996;organelle organization and biogenesis;1.91798588051959e-22!GO:0005743;mitochondrial inner membrane;1.36716158272298e-21!GO:0051641;cellular localization;1.44186513296e-21!GO:0051649;establishment of cellular localization;2.55984671293066e-21!GO:0012501;programmed cell death;8.99808128268943e-21!GO:0006915;apoptosis;9.86289893949807e-21!GO:0043412;biopolymer modification;2.90032848072853e-20!GO:0006119;oxidative phosphorylation;3.31851778084675e-20!GO:0015935;small ribosomal subunit;3.67276899235689e-20!GO:0008219;cell death;5.45287808829946e-20!GO:0016265;death;5.45287808829946e-20!GO:0022618;protein-RNA complex assembly;5.94006012585351e-20!GO:0043228;non-membrane-bound organelle;1.77286985239125e-19!GO:0043232;intracellular non-membrane-bound organelle;1.77286985239125e-19!GO:0005730;nucleolus;3.36611486240436e-19!GO:0044265;cellular macromolecule catabolic process;4.28495552318763e-19!GO:0015934;large ribosomal subunit;4.57284078730229e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.48452426734292e-18!GO:0016462;pyrophosphatase activity;1.76481268512634e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.82390930760545e-18!GO:0017111;nucleoside-triphosphatase activity;2.11449301054726e-18!GO:0044455;mitochondrial membrane part;2.58794020491555e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.05240927992636e-18!GO:0019941;modification-dependent protein catabolic process;3.09511052615083e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.09511052615083e-18!GO:0016874;ligase activity;4.61046288518349e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.88762169684527e-18!GO:0008135;translation factor activity, nucleic acid binding;6.93675004122059e-18!GO:0044257;cellular protein catabolic process;7.31264466394947e-18!GO:0006464;protein modification process;7.3635808438065e-18!GO:0006605;protein targeting;1.00577053886643e-17!GO:0031980;mitochondrial lumen;1.30060738099713e-17!GO:0005759;mitochondrial matrix;1.30060738099713e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;3.11782911492941e-17!GO:0043285;biopolymer catabolic process;4.4959972801992e-17!GO:0051276;chromosome organization and biogenesis;5.35314265502893e-17!GO:0016604;nuclear body;9.1155657283223e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.13517824721678e-16!GO:0006323;DNA packaging;1.57499111574682e-16!GO:0032553;ribonucleotide binding;1.81708848432832e-16!GO:0032555;purine ribonucleotide binding;1.81708848432832e-16!GO:0043687;post-translational protein modification;2.65170728068899e-16!GO:0008134;transcription factor binding;3.07473740257467e-16!GO:0006913;nucleocytoplasmic transport;4.0810050835738e-16!GO:0017076;purine nucleotide binding;6.24716383318744e-16!GO:0051169;nuclear transport;7.32819414711355e-16!GO:0006974;response to DNA damage stimulus;1.66715759298983e-15!GO:0006457;protein folding;4.02222580974828e-15!GO:0009057;macromolecule catabolic process;4.1784872643016e-15!GO:0005746;mitochondrial respiratory chain;5.06660187124793e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.84090421341536e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.25054439727975e-14!GO:0042981;regulation of apoptosis;1.90323839093869e-14!GO:0043067;regulation of programmed cell death;2.83394417286393e-14!GO:0016887;ATPase activity;3.74216678243404e-14!GO:0016607;nuclear speck;4.46704669043315e-14!GO:0005524;ATP binding;4.56552692617719e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;5.56935415894213e-14!GO:0000375;RNA splicing, via transesterification reactions;5.56935415894213e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.56935415894213e-14!GO:0042623;ATPase activity, coupled;6.23105351600603e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.49966693518834e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.16035046886222e-13!GO:0003954;NADH dehydrogenase activity;1.16035046886222e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.16035046886222e-13!GO:0032559;adenyl ribonucleotide binding;1.24044031910383e-13!GO:0007049;cell cycle;1.26921439715874e-13!GO:0050794;regulation of cellular process;1.74781140920994e-13!GO:0005694;chromosome;2.24880114136149e-13!GO:0003743;translation initiation factor activity;2.50975930348147e-13!GO:0006281;DNA repair;2.81082535214051e-13!GO:0030163;protein catabolic process;3.16118750536795e-13!GO:0006413;translational initiation;5.31168050167186e-13!GO:0030554;adenyl nucleotide binding;5.48064692151033e-13!GO:0012505;endomembrane system;5.85799824302325e-13!GO:0005635;nuclear envelope;8.10974990506135e-13!GO:0065004;protein-DNA complex assembly;8.49848551722543e-13!GO:0006333;chromatin assembly or disassembly;1.65567242619132e-12!GO:0031965;nuclear membrane;2.62706667494262e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.50663427490542e-12!GO:0042773;ATP synthesis coupled electron transport;3.50663427490542e-12!GO:0017038;protein import;4.51037402698531e-12!GO:0019222;regulation of metabolic process;5.39991601942247e-12!GO:0044248;cellular catabolic process;5.75736044258602e-12!GO:0044427;chromosomal part;9.28944287644403e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.10940039927092e-11!GO:0045271;respiratory chain complex I;1.10940039927092e-11!GO:0005747;mitochondrial respiratory chain complex I;1.10940039927092e-11!GO:0005761;mitochondrial ribosome;1.18217834915943e-11!GO:0000313;organellar ribosome;1.18217834915943e-11!GO:0004386;helicase activity;2.11736289333792e-11!GO:0048770;pigment granule;2.49943564679716e-11!GO:0042470;melanosome;2.49943564679716e-11!GO:0042254;ribosome biogenesis and assembly;2.83814404294403e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.28992176979475e-11!GO:0006446;regulation of translational initiation;3.59131255735294e-11!GO:0044453;nuclear membrane part;4.0025423519046e-11!GO:0051082;unfolded protein binding;4.15175609129851e-11!GO:0016568;chromatin modification;4.99168106531023e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.31348300483864e-10!GO:0008026;ATP-dependent helicase activity;2.38333258734834e-10!GO:0022402;cell cycle process;2.43883547906165e-10!GO:0008639;small protein conjugating enzyme activity;3.15341339596102e-10!GO:0031323;regulation of cellular metabolic process;3.78957403805035e-10!GO:0004842;ubiquitin-protein ligase activity;4.49044109733507e-10!GO:0003712;transcription cofactor activity;4.5607307377306e-10!GO:0050657;nucleic acid transport;4.5607307377306e-10!GO:0051236;establishment of RNA localization;4.5607307377306e-10!GO:0050658;RNA transport;4.5607307377306e-10!GO:0000785;chromatin;4.5607307377306e-10!GO:0006403;RNA localization;4.64384917301882e-10!GO:0005643;nuclear pore;8.21216091605002e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.93956166558145e-10!GO:0019829;cation-transporting ATPase activity;9.04982932658168e-10!GO:0019787;small conjugating protein ligase activity;1.10880027903186e-09!GO:0051726;regulation of cell cycle;1.16918429581801e-09!GO:0048193;Golgi vesicle transport;1.16998687597912e-09!GO:0006350;transcription;1.82208552313276e-09!GO:0000074;regulation of progression through cell cycle;1.91678567384357e-09!GO:0051186;cofactor metabolic process;2.081405173631e-09!GO:0009719;response to endogenous stimulus;2.14799387020622e-09!GO:0006793;phosphorus metabolic process;2.3567880638835e-09!GO:0006796;phosphate metabolic process;2.3567880638835e-09!GO:0006334;nucleosome assembly;2.78431368283254e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.12560411298351e-09!GO:0031497;chromatin assembly;5.45202540125893e-09!GO:0050789;regulation of biological process;6.7771494517766e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.94524504268704e-09!GO:0065002;intracellular protein transport across a membrane;8.68351359297683e-09!GO:0051170;nuclear import;9.93436175168736e-09!GO:0009259;ribonucleotide metabolic process;1.29905587622666e-08!GO:0008270;zinc ion binding;1.3375711988225e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.50854663897334e-08!GO:0006606;protein import into nucleus;1.66848348228523e-08!GO:0051028;mRNA transport;1.68370081442605e-08!GO:0005794;Golgi apparatus;1.68370081442605e-08!GO:0010468;regulation of gene expression;1.99519140603457e-08!GO:0016072;rRNA metabolic process;2.34039432911416e-08!GO:0009260;ribonucleotide biosynthetic process;2.35839636610036e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.43980600982924e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.92739764017598e-08!GO:0007243;protein kinase cascade;3.07360967263965e-08!GO:0006399;tRNA metabolic process;3.10739321008288e-08!GO:0006364;rRNA processing;3.29471313926128e-08!GO:0006164;purine nucleotide biosynthetic process;3.71521351707078e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.73300832494325e-08!GO:0043566;structure-specific DNA binding;4.19864188567871e-08!GO:0016787;hydrolase activity;4.70962910757496e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.89579180839469e-08!GO:0005768;endosome;5.00175073917451e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.19916551589326e-08!GO:0006366;transcription from RNA polymerase II promoter;5.53604272457443e-08!GO:0046930;pore complex;5.65078775462863e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.09122926932304e-08!GO:0016310;phosphorylation;6.60387920038944e-08!GO:0006163;purine nucleotide metabolic process;7.17284501521317e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.94117251582861e-08!GO:0003713;transcription coactivator activity;1.06201381822193e-07!GO:0009150;purine ribonucleotide metabolic process;1.10735180195738e-07!GO:0008565;protein transporter activity;1.19627782332249e-07!GO:0016881;acid-amino acid ligase activity;1.39885162232786e-07!GO:0015986;ATP synthesis coupled proton transport;1.42489918120187e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.42489918120187e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.50798930999528e-07!GO:0006732;coenzyme metabolic process;1.53787585562954e-07!GO:0048523;negative regulation of cellular process;2.02176502598531e-07!GO:0004298;threonine endopeptidase activity;2.04131479776761e-07!GO:0006916;anti-apoptosis;2.23653525475313e-07!GO:0003697;single-stranded DNA binding;3.08439199476731e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.10578709262317e-07!GO:0032774;RNA biosynthetic process;3.66882656742405e-07!GO:0009060;aerobic respiration;4.00166605579403e-07!GO:0045786;negative regulation of progression through cell cycle;4.09081041992143e-07!GO:0006351;transcription, DNA-dependent;4.50228253883422e-07!GO:0043069;negative regulation of programmed cell death;5.09985131288652e-07!GO:0006917;induction of apoptosis;5.34826971659142e-07!GO:0032446;protein modification by small protein conjugation;7.45820444551071e-07!GO:0044432;endoplasmic reticulum part;7.70336250521324e-07!GO:0016563;transcription activator activity;7.77951855179392e-07!GO:0051246;regulation of protein metabolic process;7.79335980334957e-07!GO:0043066;negative regulation of apoptosis;7.99556230631582e-07!GO:0012502;induction of programmed cell death;8.47805971408083e-07!GO:0000151;ubiquitin ligase complex;8.58167532829618e-07!GO:0043065;positive regulation of apoptosis;8.60973517126693e-07!GO:0051168;nuclear export;9.52732429962583e-07!GO:0006754;ATP biosynthetic process;1.06139398408874e-06!GO:0006753;nucleoside phosphate metabolic process;1.06139398408874e-06!GO:0016192;vesicle-mediated transport;1.18775065827219e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.24543937214887e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.24543937214887e-06!GO:0065009;regulation of a molecular function;1.24543937214887e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.26792923818522e-06!GO:0015399;primary active transmembrane transporter activity;1.26792923818522e-06!GO:0043068;positive regulation of programmed cell death;1.30538545300722e-06!GO:0045449;regulation of transcription;1.39489967556481e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.58476207107064e-06!GO:0000245;spliceosome assembly;1.59000629319932e-06!GO:0009055;electron carrier activity;1.59882453014025e-06!GO:0016567;protein ubiquitination;1.91040016826528e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.95778385563906e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.95778385563906e-06!GO:0045333;cellular respiration;2.13941109736185e-06!GO:0016740;transferase activity;2.287664462337e-06!GO:0005783;endoplasmic reticulum;2.287664462337e-06!GO:0016779;nucleotidyltransferase activity;2.44958617491485e-06!GO:0031324;negative regulation of cellular metabolic process;2.48535773277593e-06!GO:0051188;cofactor biosynthetic process;2.71821012069015e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.73434174823002e-06!GO:0016564;transcription repressor activity;2.73664064674158e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.80281669122369e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81299466961851e-06!GO:0009056;catabolic process;2.87066403708618e-06!GO:0009141;nucleoside triphosphate metabolic process;3.18044132878685e-06!GO:0048519;negative regulation of biological process;3.60473220653334e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.82939172231619e-06!GO:0046914;transition metal ion binding;3.82939172231619e-06!GO:0005789;endoplasmic reticulum membrane;3.87876128038032e-06!GO:0046034;ATP metabolic process;3.97381036105585e-06!GO:0045259;proton-transporting ATP synthase complex;4.06175602971382e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.20755317585896e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.32017908246723e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.32017908246723e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.59709469252641e-06!GO:0007005;mitochondrion organization and biogenesis;4.80250410696721e-06!GO:0003724;RNA helicase activity;5.11227365751528e-06!GO:0006260;DNA replication;6.46539559858405e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.56365200736467e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.56365200736467e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.56365200736467e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.6568591634473e-06!GO:0006401;RNA catabolic process;1.26638689830427e-05!GO:0043038;amino acid activation;1.36470646405177e-05!GO:0006418;tRNA aminoacylation for protein translation;1.36470646405177e-05!GO:0043039;tRNA aminoacylation;1.36470646405177e-05!GO:0019899;enzyme binding;1.40314119585384e-05!GO:0000786;nucleosome;1.42765843869228e-05!GO:0000278;mitotic cell cycle;1.43563693050442e-05!GO:0008234;cysteine-type peptidase activity;1.69320344951366e-05!GO:0006355;regulation of transcription, DNA-dependent;1.74252943808082e-05!GO:0065007;biological regulation;1.95871600971168e-05!GO:0006613;cotranslational protein targeting to membrane;1.96352871813082e-05!GO:0003677;DNA binding;2.06013567502463e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.06915605885509e-05!GO:0009615;response to virus;2.16841323948852e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;2.16943262565533e-05!GO:0009892;negative regulation of metabolic process;2.31899363400475e-05!GO:0016363;nuclear matrix;2.50561746995255e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.85734407231729e-05!GO:0009108;coenzyme biosynthetic process;3.16919296641871e-05!GO:0005793;ER-Golgi intermediate compartment;3.47717172523842e-05!GO:0006402;mRNA catabolic process;3.47717172523842e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.52866674430276e-05!GO:0006099;tricarboxylic acid cycle;4.00285407218165e-05!GO:0046356;acetyl-CoA catabolic process;4.00285407218165e-05!GO:0008632;apoptotic program;4.11293226350954e-05!GO:0030120;vesicle coat;4.40219124270007e-05!GO:0030662;coated vesicle membrane;4.40219124270007e-05!GO:0007242;intracellular signaling cascade;5.21394794634718e-05!GO:0008186;RNA-dependent ATPase activity;7.01783226901736e-05!GO:0048475;coated membrane;7.06391791525659e-05!GO:0030117;membrane coat;7.06391791525659e-05!GO:0006752;group transfer coenzyme metabolic process;7.46875277857642e-05!GO:0004674;protein serine/threonine kinase activity;7.68370319531702e-05!GO:0006084;acetyl-CoA metabolic process;8.8532460782241e-05!GO:0016481;negative regulation of transcription;9.52155147858999e-05!GO:0005813;centrosome;0.000105642267493475!GO:0006417;regulation of translation;0.000133464580206244!GO:0005762;mitochondrial large ribosomal subunit;0.000134701549280124!GO:0000315;organellar large ribosomal subunit;0.000134701549280124!GO:0006310;DNA recombination;0.000146981902502685!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000149253238035798!GO:0008654;phospholipid biosynthetic process;0.000150360573769685!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000168217096222863!GO:0043623;cellular protein complex assembly;0.000187770434489935!GO:0016251;general RNA polymerase II transcription factor activity;0.000187770434489935!GO:0003899;DNA-directed RNA polymerase activity;0.000200479659782426!GO:0006352;transcription initiation;0.000217120017150511!GO:0004004;ATP-dependent RNA helicase activity;0.000217864047587309!GO:0005667;transcription factor complex;0.00022781002580329!GO:0009109;coenzyme catabolic process;0.000242718561715783!GO:0006612;protein targeting to membrane;0.000259789749838695!GO:0005885;Arp2/3 protein complex;0.00026555546264963!GO:0005525;GTP binding;0.00026555546264963!GO:0005769;early endosome;0.000287387123817311!GO:0003729;mRNA binding;0.000303974647299864!GO:0005815;microtubule organizing center;0.000308830508239063!GO:0003924;GTPase activity;0.000325565758991277!GO:0044431;Golgi apparatus part;0.000327603733326399!GO:0031326;regulation of cellular biosynthetic process;0.000342170903360565!GO:0043021;ribonucleoprotein binding;0.000343327174733844!GO:0051427;hormone receptor binding;0.000346807920571451!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000375347664121572!GO:0005773;vacuole;0.000379071059868092!GO:0030384;phosphoinositide metabolic process;0.000394166862709498!GO:0006461;protein complex assembly;0.000408305561438552!GO:0044440;endosomal part;0.000418960758002998!GO:0010008;endosome membrane;0.000418960758002998!GO:0048471;perinuclear region of cytoplasm;0.00046797001463456!GO:0048522;positive regulation of cellular process;0.000475113697202135!GO:0006818;hydrogen transport;0.000489274170891252!GO:0006261;DNA-dependent DNA replication;0.000494931781852397!GO:0051187;cofactor catabolic process;0.000520428230631483!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00055430895305398!GO:0015992;proton transport;0.000566189507906676!GO:0043681;protein import into mitochondrion;0.000591412443417548!GO:0003690;double-stranded DNA binding;0.000594249446749486!GO:0005770;late endosome;0.000630548228305099!GO:0035257;nuclear hormone receptor binding;0.000633089332676806!GO:0050790;regulation of catalytic activity;0.000675247992020325!GO:0046489;phosphoinositide biosynthetic process;0.000677576291934039!GO:0060090;molecular adaptor activity;0.000681558219462464!GO:0006383;transcription from RNA polymerase III promoter;0.000740417313647694!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00075077695471904!GO:0006611;protein export from nucleus;0.000834773243165176!GO:0051789;response to protein stimulus;0.000844720413063819!GO:0006986;response to unfolded protein;0.000844720413063819!GO:0003714;transcription corepressor activity;0.000853189635200872!GO:0006414;translational elongation;0.000868515988368919!GO:0006891;intra-Golgi vesicle-mediated transport;0.000974676311952136!GO:0019783;small conjugating protein-specific protease activity;0.000997478164021258!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00102995892213527!GO:0000314;organellar small ribosomal subunit;0.00104393005247035!GO:0005763;mitochondrial small ribosomal subunit;0.00104393005247035!GO:0008033;tRNA processing;0.00118980761664103!GO:0019843;rRNA binding;0.00126202619140859!GO:0006650;glycerophospholipid metabolic process;0.00134926332866289!GO:0031072;heat shock protein binding;0.0013722586501945!GO:0009117;nucleotide metabolic process;0.0013868667258504!GO:0000323;lytic vacuole;0.0013996184175927!GO:0005764;lysosome;0.0013996184175927!GO:0022403;cell cycle phase;0.00141859826948228!GO:0051251;positive regulation of lymphocyte activation;0.0014563091044053!GO:0009967;positive regulation of signal transduction;0.00147401606238815!GO:0004843;ubiquitin-specific protease activity;0.00147934104513728!GO:0000087;M phase of mitotic cell cycle;0.00169386903371748!GO:0009889;regulation of biosynthetic process;0.00170628152909546!GO:0016197;endosome transport;0.00175077456877139!GO:0006405;RNA export from nucleus;0.001830464869402!GO:0042802;identical protein binding;0.00186615983958591!GO:0003746;translation elongation factor activity;0.00197086673838903!GO:0051301;cell division;0.00197499206061739!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197499206061739!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197499206061739!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197499206061739!GO:0016741;transferase activity, transferring one-carbon groups;0.00201893594043441!GO:0008168;methyltransferase activity;0.00202489315939267!GO:0007067;mitosis;0.00208856124980605!GO:0022890;inorganic cation transmembrane transporter activity;0.00218278371067462!GO:0032561;guanyl ribonucleotide binding;0.00228024994425095!GO:0019001;guanyl nucleotide binding;0.00228024994425095!GO:0046474;glycerophospholipid biosynthetic process;0.00229629713376713!GO:0051252;regulation of RNA metabolic process;0.00260654647323143!GO:0006607;NLS-bearing substrate import into nucleus;0.00261051207501642!GO:0022415;viral reproductive process;0.00261847380585141!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00264063893973183!GO:0042110;T cell activation;0.00267303485100515!GO:0004221;ubiquitin thiolesterase activity;0.00270116633130552!GO:0007006;mitochondrial membrane organization and biogenesis;0.00274826892204786!GO:0004518;nuclease activity;0.00274826892204786!GO:0046822;regulation of nucleocytoplasmic transport;0.00281741438137815!GO:0008047;enzyme activator activity;0.00284945373385909!GO:0004527;exonuclease activity;0.00295341187311979!GO:0005798;Golgi-associated vesicle;0.00303521443466361!GO:0019867;outer membrane;0.00304873319574605!GO:0046966;thyroid hormone receptor binding;0.00310789957587438!GO:0044452;nucleolar part;0.0031678715123835!GO:0005741;mitochondrial outer membrane;0.00327372798261558!GO:0043488;regulation of mRNA stability;0.00343551558752984!GO:0043487;regulation of RNA stability;0.00343551558752984!GO:0048500;signal recognition particle;0.0035869690875277!GO:0005684;U2-dependent spliceosome;0.00373480455046896!GO:0031968;organelle outer membrane;0.00383458655477201!GO:0007050;cell cycle arrest;0.003850571032641!GO:0015631;tubulin binding;0.00389169770447857!GO:0000139;Golgi membrane;0.00418691586601748!GO:0016584;nucleosome positioning;0.00422037384353071!GO:0008022;protein C-terminus binding;0.00427456418607839!GO:0051087;chaperone binding;0.00431351388401057!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00444100491204151!GO:0015002;heme-copper terminal oxidase activity;0.00444100491204151!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00444100491204151!GO:0004129;cytochrome-c oxidase activity;0.00444100491204151!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00451975039331535!GO:0003711;transcription elongation regulator activity;0.00462409219489099!GO:0001772;immunological synapse;0.00466344396871276!GO:0015630;microtubule cytoskeleton;0.00466529622615035!GO:0005637;nuclear inner membrane;0.0048474477884565!GO:0042101;T cell receptor complex;0.00527554144860766!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00528719546275106!GO:0031625;ubiquitin protein ligase binding;0.00533249315986914!GO:0016859;cis-trans isomerase activity;0.00536026799748282!GO:0008312;7S RNA binding;0.00559948233322981!GO:0005669;transcription factor TFIID complex;0.00572573089888796!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00590451372780564!GO:0045047;protein targeting to ER;0.00590451372780564!GO:0032259;methylation;0.00604905977458149!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0062188820164843!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0062188820164843!GO:0051539;4 iron, 4 sulfur cluster binding;0.00625306929272848!GO:0043414;biopolymer methylation;0.00634641782744658!GO:0003678;DNA helicase activity;0.00684202184142085!GO:0006289;nucleotide-excision repair;0.00700923085043702!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00703001734412375!GO:0046467;membrane lipid biosynthetic process;0.00715931105564667!GO:0030518;steroid hormone receptor signaling pathway;0.00716361759282598!GO:0051092;activation of NF-kappaB transcription factor;0.00716955054976768!GO:0006626;protein targeting to mitochondrion;0.00736559253099927!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00740069136454217!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0074380438775046!GO:0030658;transport vesicle membrane;0.00755149821907412!GO:0006302;double-strand break repair;0.00778675676671052!GO:0000049;tRNA binding;0.0079472506813749!GO:0045892;negative regulation of transcription, DNA-dependent;0.00799355361918379!GO:0007265;Ras protein signal transduction;0.00802551123154044!GO:0004197;cysteine-type endopeptidase activity;0.00802736646053155!GO:0048518;positive regulation of biological process;0.00805812753479767!GO:0004532;exoribonuclease activity;0.0080995744949393!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0080995744949393!GO:0051090;regulation of transcription factor activity;0.00820202660735736!GO:0006839;mitochondrial transport;0.00822449494082539!GO:0008017;microtubule binding;0.0085027915304131!GO:0031252;leading edge;0.00871065761525804!GO:0006338;chromatin remodeling;0.00874760120129209!GO:0006497;protein amino acid lipidation;0.00876563208530647!GO:0008624;induction of apoptosis by extracellular signals;0.00884116003008794!GO:0048468;cell development;0.00894209805669904!GO:0016790;thiolester hydrolase activity;0.00917792032730988!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00936297750367228!GO:0016853;isomerase activity;0.00961610299184089!GO:0046649;lymphocyte activation;0.0098871735110037!GO:0016272;prefoldin complex;0.0101489940547796!GO:0051223;regulation of protein transport;0.0102564684633734!GO:0007034;vacuolar transport;0.0104241469332815!GO:0051540;metal cluster binding;0.0106425481420954!GO:0051536;iron-sulfur cluster binding;0.0106425481420954!GO:0007264;small GTPase mediated signal transduction;0.0107557971618904!GO:0000287;magnesium ion binding;0.0109503810914258!GO:0016311;dephosphorylation;0.0112405872054805!GO:0005070;SH3/SH2 adaptor activity;0.011853937052217!GO:0006506;GPI anchor biosynthetic process;0.0123573747918038!GO:0050852;T cell receptor signaling pathway;0.0124191269167086!GO:0030695;GTPase regulator activity;0.0125151333806388!GO:0005774;vacuolar membrane;0.0129168753615939!GO:0048487;beta-tubulin binding;0.0131743877109529!GO:0003725;double-stranded RNA binding;0.0131743877109529!GO:0006914;autophagy;0.0131935823123157!GO:0043022;ribosome binding;0.0133224402892154!GO:0008408;3'-5' exonuclease activity;0.0133401870573893!GO:0005657;replication fork;0.013571875435197!GO:0005869;dynactin complex;0.0138935105705134!GO:0043621;protein self-association;0.0139707551655188!GO:0008287;protein serine/threonine phosphatase complex;0.0142136809711874!GO:0050865;regulation of cell activation;0.0142136809711874!GO:0009165;nucleotide biosynthetic process;0.0142498081151951!GO:0006505;GPI anchor metabolic process;0.0142498081151951!GO:0051249;regulation of lymphocyte activation;0.0143899856651349!GO:0051920;peroxiredoxin activity;0.014446491114288!GO:0051329;interphase of mitotic cell cycle;0.0146798641661891!GO:0003684;damaged DNA binding;0.0148145791392631!GO:0006376;mRNA splice site selection;0.0148240520855576!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0148240520855576!GO:0051098;regulation of binding;0.0155821418923862!GO:0030880;RNA polymerase complex;0.0156377316901248!GO:0033116;ER-Golgi intermediate compartment membrane;0.0157155729353974!GO:0006919;caspase activation;0.0161927575358523!GO:0030660;Golgi-associated vesicle membrane;0.016386293015533!GO:0030521;androgen receptor signaling pathway;0.016580539455868!GO:0005048;signal sequence binding;0.0168281264401102!GO:0051059;NF-kappaB binding;0.0169657639962865!GO:0030118;clathrin coat;0.0170170958683349!GO:0000209;protein polyubiquitination;0.0170646648676572!GO:0043281;regulation of caspase activity;0.0173576974507655!GO:0051336;regulation of hydrolase activity;0.0177005203057893!GO:0000279;M phase;0.0188259444976702!GO:0050870;positive regulation of T cell activation;0.0190971631614772!GO:0015923;mannosidase activity;0.0191149891801544!GO:0003682;chromatin binding;0.0193938975844113!GO:0000119;mediator complex;0.01954365801865!GO:0009966;regulation of signal transduction;0.0196860860539712!GO:0046983;protein dimerization activity;0.0200508284518272!GO:0008139;nuclear localization sequence binding;0.0200860031512078!GO:0030522;intracellular receptor-mediated signaling pathway;0.0201096020795615!GO:0032200;telomere organization and biogenesis;0.0203781935772771!GO:0000723;telomere maintenance;0.0203781935772771!GO:0016791;phosphoric monoester hydrolase activity;0.0204082520779209!GO:0050811;GABA receptor binding;0.0205505425936227!GO:0022411;cellular component disassembly;0.0207119057918111!GO:0004177;aminopeptidase activity;0.0211112199790002!GO:0019901;protein kinase binding;0.0213261928223822!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0215442089369797!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0215667664063655!GO:0010257;NADH dehydrogenase complex assembly;0.0215667664063655!GO:0033108;mitochondrial respiratory chain complex assembly;0.0215667664063655!GO:0040029;regulation of gene expression, epigenetic;0.0216421940617525!GO:0000178;exosome (RNase complex);0.0218528343039171!GO:0045454;cell redox homeostasis;0.0220648632501388!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0220882833979943!GO:0000738;DNA catabolic process, exonucleolytic;0.0221532342828914!GO:0051235;maintenance of localization;0.022585788654292!GO:0008097;5S rRNA binding;0.0225956427265569!GO:0016788;hydrolase activity, acting on ester bonds;0.0228051298645305!GO:0015980;energy derivation by oxidation of organic compounds;0.0234335847191829!GO:0006595;polyamine metabolic process;0.0235005061123723!GO:0000776;kinetochore;0.0237931896648768!GO:0042158;lipoprotein biosynthetic process;0.0238314039917077!GO:0044437;vacuolar part;0.0240719020324227!GO:0030833;regulation of actin filament polymerization;0.024115242095193!GO:0005083;small GTPase regulator activity;0.0241992347018431!GO:0001667;ameboidal cell migration;0.0245217877766006!GO:0032027;myosin light chain binding;0.0245217877766006!GO:0008276;protein methyltransferase activity;0.024581753815101!GO:0044438;microbody part;0.0248599410962401!GO:0044439;peroxisomal part;0.0248599410962401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0248934748390554!GO:0030968;unfolded protein response;0.0249337815900321!GO:0051052;regulation of DNA metabolic process;0.025187071057349!GO:0008180;signalosome;0.0258174440584013!GO:0005765;lysosomal membrane;0.0261596845819564!GO:0051325;interphase;0.0262299146906984!GO:0045603;positive regulation of endothelial cell differentiation;0.0263547228689938!GO:0030258;lipid modification;0.0263669651662828!GO:0050863;regulation of T cell activation;0.0270013340502095!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0270463993137485!GO:0000428;DNA-directed RNA polymerase complex;0.0270463993137485!GO:0009116;nucleoside metabolic process;0.0271272783901515!GO:0033673;negative regulation of kinase activity;0.0271272783901515!GO:0006469;negative regulation of protein kinase activity;0.0271272783901515!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0271857153875446!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0272835913384255!GO:0016301;kinase activity;0.0282657210945149!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0293393858301098!GO:0031982;vesicle;0.0297324474065017!GO:0004722;protein serine/threonine phosphatase activity;0.0307208448683778!GO:0022406;membrane docking;0.0311914971299491!GO:0048278;vesicle docking;0.0311914971299491!GO:0005832;chaperonin-containing T-complex;0.031262711408008!GO:0005521;lamin binding;0.0314880944554224!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0321804516085449!GO:0033157;regulation of intracellular protein transport;0.0336658258287827!GO:0042306;regulation of protein import into nucleus;0.0336658258287827!GO:0047485;protein N-terminus binding;0.0336944546047955!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0339374250638228!GO:0031988;membrane-bound vesicle;0.0339374250638228!GO:0006984;ER-nuclear signaling pathway;0.0341008938002521!GO:0004721;phosphoprotein phosphatase activity;0.0343346200837431!GO:0006904;vesicle docking during exocytosis;0.034338327533759!GO:0042608;T cell receptor binding;0.0349017810088627!GO:0006672;ceramide metabolic process;0.0353231781028087!GO:0042393;histone binding;0.0354404505813316!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0354404505813316!GO:0031647;regulation of protein stability;0.0355215710140359!GO:0004576;oligosaccharyl transferase activity;0.0355215710140359!GO:0030127;COPII vesicle coat;0.0355592596250644!GO:0012507;ER to Golgi transport vesicle membrane;0.0355592596250644!GO:0019900;kinase binding;0.0359231931788632!GO:0000082;G1/S transition of mitotic cell cycle;0.0360726415171572!GO:0007259;JAK-STAT cascade;0.0361027416267229!GO:0001784;phosphotyrosine binding;0.036209556016273!GO:0019210;kinase inhibitor activity;0.0362410723226683!GO:0045309;protein phosphorylated amino acid binding;0.0365153245259671!GO:0005096;GTPase activator activity;0.036669865173328!GO:0008637;apoptotic mitochondrial changes;0.0367970473102821!GO:0031124;mRNA 3'-end processing;0.0368211564619969!GO:0006354;RNA elongation;0.0369202583187696!GO:0007004;telomere maintenance via telomerase;0.037126430947238!GO:0019058;viral infectious cycle;0.037126430947238!GO:0031903;microbody membrane;0.037126430947238!GO:0005778;peroxisomal membrane;0.037126430947238!GO:0000303;response to superoxide;0.0374621653158835!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0376048132664734!GO:0045947;negative regulation of translational initiation;0.0377495047970267!GO:0030134;ER to Golgi transport vesicle;0.0388149198851792!GO:0043280;positive regulation of caspase activity;0.0388416223214418!GO:0043284;biopolymer biosynthetic process;0.0388994212229942!GO:0006470;protein amino acid dephosphorylation;0.0389108193228391!GO:0030137;COPI-coated vesicle;0.0389582965885464!GO:0000781;chromosome, telomeric region;0.0390673272386317!GO:0000175;3'-5'-exoribonuclease activity;0.0391978625605506!GO:0016605;PML body;0.0394740222353266!GO:0006406;mRNA export from nucleus;0.0394740222353266!GO:0016505;apoptotic protease activator activity;0.0397374369946922!GO:0009112;nucleobase metabolic process;0.0412629295063812!GO:0030663;COPI coated vesicle membrane;0.0414605887095809!GO:0030126;COPI vesicle coat;0.0414605887095809!GO:0005819;spindle;0.0416647816548423!GO:0004659;prenyltransferase activity;0.0416756176809477!GO:0000339;RNA cap binding;0.0417537821396291!GO:0031902;late endosome membrane;0.0418016193760437!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.043275252021535!GO:0030867;rough endoplasmic reticulum membrane;0.0438994795507947!GO:0045941;positive regulation of transcription;0.0439870980642284!GO:0006284;base-excision repair;0.0446296184793786!GO:0000118;histone deacetylase complex;0.0451823001676305!GO:0000090;mitotic anaphase;0.0453180430733176!GO:0051322;anaphase;0.0453180430733176!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0457057955598044!GO:0046426;negative regulation of JAK-STAT cascade;0.0463445133081404!GO:0032508;DNA duplex unwinding;0.0463481501659548!GO:0032392;DNA geometric change;0.0463481501659548!GO:0051348;negative regulation of transferase activity;0.0472569011299905!GO:0008320;protein transmembrane transporter activity;0.0476715112221082!GO:0004860;protein kinase inhibitor activity;0.0483513340375834!GO:0005092;GDP-dissociation inhibitor activity;0.0483513340375834!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0485352472085762!GO:0046519;sphingoid metabolic process;0.049152741318301!GO:0000075;cell cycle checkpoint;0.0497150881715518!GO:0007041;lysosomal transport;0.0498233057060001!GO:0030125;clathrin vesicle coat;0.049918517635354!GO:0030665;clathrin coated vesicle membrane;0.049918517635354 | |||
|sample_id=11786 | |sample_id=11786 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=PAX3,7:3.8169828291;RORA:3.4099532461;CREB1:3.30550402292;RUNX1..3:3.30477458504;FOX{D1,D2}:3.04547122787;ATF5_CREB3:2.88366233859;ELF1,2,4:2.75641699088;FOXO1,3,4:2.63997038049;ATF4:2.59074215859;FOX{F1,F2,J1}:2.45304401802;RFX2..5_RFXANK_RFXAP:2.40795047515;BPTF:2.34129129552;T:2.27605743647;ETS1,2:2.17776755692;RFX1:1.89256955793;CDX1,2,4:1.87992614444;LEF1_TCF7_TCF7L1,2:1.86665819192;PAX2:1.76371763857;PBX1:1.75464830419;DMAP1_NCOR{1,2}_SMARC:1.73733592903;FOX{I1,J2}:1.73392541678;ATF6:1.71457173684;PDX1:1.70164841163;JUN:1.52423301514;TLX2:1.50907304564;HMX1:1.46071676747;SPI1:1.42811739096;ATF2:1.41537137133;FOXN1:1.38676344453;TGIF1:1.33510121593;ELK1,4_GABP{A,B1}:1.31520780004;NFATC1..3:1.21666094823;GATA6:1.20124254571;IRF1,2:1.19373930783;PAX6:1.16588532647;SPIB:1.15403774066;NFIX:1.07284560428;NFIL3:1.03484061231;TBX4,5:0.998729265781;HIF1A:0.975440028565;NFKB1_REL_RELA:0.9118369303;NANOG{mouse}:0.847534560073;SOX2:0.83138426389;BREu{core}:0.80253876567;EP300:0.760921754862;PAX4:0.607851829299;NKX2-1,4:0.599707984921;MAFB:0.583019972347;IRF7:0.576482823464;HES1:0.557992003719;CRX:0.497578874507;ZBTB16:0.478567614451;POU2F1..3:0.440289590972;AHR_ARNT_ARNT2:0.349892853525;NANOG:0.332728983116;ZEB1:0.313377041184;STAT1,3:0.302197721572;LMO2:0.296754219389;CUX2:0.253475212579;YY1:0.250218882801;SNAI1..3:0.248879362831;HOX{A6,A7,B6,B7}:0.194645147472;FOXA2:0.187559249841;SREBF1,2:0.166511477073;TAL1_TCF{3,4,12}:0.145868888907;FOXQ1:0.122201246738;FOSL2:0.0942691906199;MYOD1:0.0899871440545;SPZ1:0.0827522894209;NFY{A,B,C}:0.0554104497384;STAT5{A,B}:0.0467924209769;NFE2L1:0.0063849488358;NKX6-1,2:-0.0365479252528;IKZF2:-0.0575155379403;MYB:-0.0608100001885;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.072328679973;NR5A1,2:-0.0761852037977;NRF1:-0.0883587889853;POU1F1:-0.0900025701054;EGR1..3:-0.114753052357;NKX2-2,8:-0.159724356795;FOXP1:-0.163616536186;SOX5:-0.181193593479;STAT2,4,6:-0.197777957411;HBP1_HMGB_SSRP1_UBTF:-0.210228310029;HLF:-0.259068895616;AR:-0.267840229072;NFE2L2:-0.276313266294;OCT4_SOX2{dimer}:-0.278813663136;ALX1:-0.301584226704;E2F1..5:-0.31690212367;FOS_FOS{B,L1}_JUN{B,D}:-0.362578140762;BACH2:-0.362897817233;HAND1,2:-0.366819369942;PAX5:-0.375552016038;FOXP3:-0.378470658921;NFE2:-0.396034209052;GFI1:-0.436887068347;ZNF143:-0.449500947965;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.483766455176;HNF1A:-0.494412663602;PRRX1,2:-0.503388255459;VSX1,2:-0.516327045464;CEBPA,B_DDIT3:-0.520455203184;SMAD1..7,9:-0.525781165098;PITX1..3:-0.527298193901;ZNF148:-0.567330053064;FOXD3:-0.569536453797;HNF4A_NR2F1,2:-0.578634650676;PPARG:-0.604466996241;SOX{8,9,10}:-0.633524518262;ZNF384:-0.676810102596;NKX3-1:-0.715313383076;MYFfamily:-0.723006895572;SRF:-0.735720775633;HMGA1,2:-0.762031130436;AIRE:-0.772264717334;MTF1:-0.784099490953;GFI1B:-0.82948607211;MEF2{A,B,C,D}:-0.84033359788;ALX4:-0.840682480014;RBPJ:-0.844125853894;bHLH_family:-0.860836548042;MED-1{core}:-0.867603150737;NHLH1,2:-0.875874602799;MYBL2:-0.877214616942;RXRA_VDR{dimer}:-0.893519928797;ZFP161:-0.897663314374;PATZ1:-0.955782424635;MZF1:-0.956053943001;EVI1:-0.981384267484;RREB1:-0.998471663963;ARID5B:-1.02076749413;POU5F1:-1.026113378;GCM1,2:-1.0268930526;PAX8:-1.04228732199;ADNP_IRX_SIX_ZHX:-1.0572632176;ZBTB6:-1.06975244268;GLI1..3:-1.07009649882;XBP1:-1.10566234494;NKX2-3_NKX2-5:-1.10988486119;REST:-1.12559338815;TFCP2:-1.12698374938;LHX3,4:-1.14616381383;DBP:-1.15714047192;ZNF423:-1.16982450828;TBP:-1.17433386561;MAZ:-1.17591890092;SOX17:-1.18945190964;ESRRA:-1.19034876886;TFAP4:-1.20628364074;HOX{A5,B5}:-1.21533359623;ZNF238:-1.22517742528;MTE{core}:-1.22598963507;TFDP1:-1.24584098621;FOXM1:-1.26265581927;POU3F1..4:-1.26961085217;TOPORS:-1.33022890277;TFAP2B:-1.36030364054;SP1:-1.37365535635;TP53:-1.38218888719;GATA4:-1.39032412097;UFEwm:-1.40645372729;PRDM1:-1.42444059231;GTF2I:-1.57375644423;XCPE1{core}:-1.58610752995;HSF1,2:-1.60298601704;HIC1:-1.63816733152;ZIC1..3:-1.68080230144;NR6A1:-1.68321421791;TEAD1:-1.70198527173;TLX1..3_NFIC{dimer}:-1.72006656812;HOXA9_MEIS1:-1.72352410368;FOXL1:-1.72915166522;TFAP2{A,C}:-1.73175816877;EN1,2:-1.75435340409;GTF2A1,2:-1.75904044981;CDC5L:-1.76938663536;HOX{A4,D4}:-1.78005822453;NR1H4:-1.7906966701;ESR1:-1.85399969031;NR3C1:-1.8639624569;EBF1:-1.87244951211;ONECUT1,2:-1.91721743412;KLF4:-1.94270220975;GZF1:-2.03263446917;PAX1,9:-2.15464400884;POU6F1:-2.33644677951;RXR{A,B,G}:-2.39885891822;TEF:-2.52487532604;NKX3-2:-2.63356151901;IKZF1:-2.79678125493 | |top_motifs=PAX3,7:3.8169828291;RORA:3.4099532461;CREB1:3.30550402292;RUNX1..3:3.30477458504;FOX{D1,D2}:3.04547122787;ATF5_CREB3:2.88366233859;ELF1,2,4:2.75641699088;FOXO1,3,4:2.63997038049;ATF4:2.59074215859;FOX{F1,F2,J1}:2.45304401802;RFX2..5_RFXANK_RFXAP:2.40795047515;BPTF:2.34129129552;T:2.27605743647;ETS1,2:2.17776755692;RFX1:1.89256955793;CDX1,2,4:1.87992614444;LEF1_TCF7_TCF7L1,2:1.86665819192;PAX2:1.76371763857;PBX1:1.75464830419;DMAP1_NCOR{1,2}_SMARC:1.73733592903;FOX{I1,J2}:1.73392541678;ATF6:1.71457173684;PDX1:1.70164841163;JUN:1.52423301514;TLX2:1.50907304564;HMX1:1.46071676747;SPI1:1.42811739096;ATF2:1.41537137133;FOXN1:1.38676344453;TGIF1:1.33510121593;ELK1,4_GABP{A,B1}:1.31520780004;NFATC1..3:1.21666094823;GATA6:1.20124254571;IRF1,2:1.19373930783;PAX6:1.16588532647;SPIB:1.15403774066;NFIX:1.07284560428;NFIL3:1.03484061231;TBX4,5:0.998729265781;HIF1A:0.975440028565;NFKB1_REL_RELA:0.9118369303;NANOG{mouse}:0.847534560073;SOX2:0.83138426389;BREu{core}:0.80253876567;EP300:0.760921754862;PAX4:0.607851829299;NKX2-1,4:0.599707984921;MAFB:0.583019972347;IRF7:0.576482823464;HES1:0.557992003719;CRX:0.497578874507;ZBTB16:0.478567614451;POU2F1..3:0.440289590972;AHR_ARNT_ARNT2:0.349892853525;NANOG:0.332728983116;ZEB1:0.313377041184;STAT1,3:0.302197721572;LMO2:0.296754219389;CUX2:0.253475212579;YY1:0.250218882801;SNAI1..3:0.248879362831;HOX{A6,A7,B6,B7}:0.194645147472;FOXA2:0.187559249841;SREBF1,2:0.166511477073;TAL1_TCF{3,4,12}:0.145868888907;FOXQ1:0.122201246738;FOSL2:0.0942691906199;MYOD1:0.0899871440545;SPZ1:0.0827522894209;NFY{A,B,C}:0.0554104497384;STAT5{A,B}:0.0467924209769;NFE2L1:0.0063849488358;NKX6-1,2:-0.0365479252528;IKZF2:-0.0575155379403;MYB:-0.0608100001885;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.072328679973;NR5A1,2:-0.0761852037977;NRF1:-0.0883587889853;POU1F1:-0.0900025701054;EGR1..3:-0.114753052357;NKX2-2,8:-0.159724356795;FOXP1:-0.163616536186;SOX5:-0.181193593479;STAT2,4,6:-0.197777957411;HBP1_HMGB_SSRP1_UBTF:-0.210228310029;HLF:-0.259068895616;AR:-0.267840229072;NFE2L2:-0.276313266294;OCT4_SOX2{dimer}:-0.278813663136;ALX1:-0.301584226704;E2F1..5:-0.31690212367;FOS_FOS{B,L1}_JUN{B,D}:-0.362578140762;BACH2:-0.362897817233;HAND1,2:-0.366819369942;PAX5:-0.375552016038;FOXP3:-0.378470658921;NFE2:-0.396034209052;GFI1:-0.436887068347;ZNF143:-0.449500947965;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.483766455176;HNF1A:-0.494412663602;PRRX1,2:-0.503388255459;VSX1,2:-0.516327045464;CEBPA,B_DDIT3:-0.520455203184;SMAD1..7,9:-0.525781165098;PITX1..3:-0.527298193901;ZNF148:-0.567330053064;FOXD3:-0.569536453797;HNF4A_NR2F1,2:-0.578634650676;PPARG:-0.604466996241;SOX{8,9,10}:-0.633524518262;ZNF384:-0.676810102596;NKX3-1:-0.715313383076;MYFfamily:-0.723006895572;SRF:-0.735720775633;HMGA1,2:-0.762031130436;AIRE:-0.772264717334;MTF1:-0.784099490953;GFI1B:-0.82948607211;MEF2{A,B,C,D}:-0.84033359788;ALX4:-0.840682480014;RBPJ:-0.844125853894;bHLH_family:-0.860836548042;MED-1{core}:-0.867603150737;NHLH1,2:-0.875874602799;MYBL2:-0.877214616942;RXRA_VDR{dimer}:-0.893519928797;ZFP161:-0.897663314374;PATZ1:-0.955782424635;MZF1:-0.956053943001;EVI1:-0.981384267484;RREB1:-0.998471663963;ARID5B:-1.02076749413;POU5F1:-1.026113378;GCM1,2:-1.0268930526;PAX8:-1.04228732199;ADNP_IRX_SIX_ZHX:-1.0572632176;ZBTB6:-1.06975244268;GLI1..3:-1.07009649882;XBP1:-1.10566234494;NKX2-3_NKX2-5:-1.10988486119;REST:-1.12559338815;TFCP2:-1.12698374938;LHX3,4:-1.14616381383;DBP:-1.15714047192;ZNF423:-1.16982450828;TBP:-1.17433386561;MAZ:-1.17591890092;SOX17:-1.18945190964;ESRRA:-1.19034876886;TFAP4:-1.20628364074;HOX{A5,B5}:-1.21533359623;ZNF238:-1.22517742528;MTE{core}:-1.22598963507;TFDP1:-1.24584098621;FOXM1:-1.26265581927;POU3F1..4:-1.26961085217;TOPORS:-1.33022890277;TFAP2B:-1.36030364054;SP1:-1.37365535635;TP53:-1.38218888719;GATA4:-1.39032412097;UFEwm:-1.40645372729;PRDM1:-1.42444059231;GTF2I:-1.57375644423;XCPE1{core}:-1.58610752995;HSF1,2:-1.60298601704;HIC1:-1.63816733152;ZIC1..3:-1.68080230144;NR6A1:-1.68321421791;TEAD1:-1.70198527173;TLX1..3_NFIC{dimer}:-1.72006656812;HOXA9_MEIS1:-1.72352410368;FOXL1:-1.72915166522;TFAP2{A,C}:-1.73175816877;EN1,2:-1.75435340409;GTF2A1,2:-1.75904044981;CDC5L:-1.76938663536;HOX{A4,D4}:-1.78005822453;NR1H4:-1.7906966701;ESR1:-1.85399969031;NR3C1:-1.8639624569;EBF1:-1.87244951211;ONECUT1,2:-1.91721743412;KLF4:-1.94270220975;GZF1:-2.03263446917;PAX1,9:-2.15464400884;POU6F1:-2.33644677951;RXR{A,B,G}:-2.39885891822;TEF:-2.52487532604;NKX3-2:-2.63356151901;IKZF1:-2.79678125493 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11786-124B4;search_select_hide=table117:FF:11786-124B4 | |||
}} | }} | ||
Latest revision as of 18:20, 4 June 2020
| Name: | CD4+CD25-CD45RA- memory conventional T cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13239 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13239
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13239
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.713 |
| 10 | 10 | 0.0255 |
| 100 | 100 | 0.96 |
| 101 | 101 | 0.439 |
| 102 | 102 | 0.904 |
| 103 | 103 | 0.543 |
| 104 | 104 | 0.656 |
| 105 | 105 | 0.159 |
| 106 | 106 | 0.733 |
| 107 | 107 | 0.00202 |
| 108 | 108 | 0.468 |
| 109 | 109 | 0.211 |
| 11 | 11 | 0.447 |
| 110 | 110 | 0.969 |
| 111 | 111 | 0.549 |
| 112 | 112 | 0.931 |
| 113 | 113 | 0.381 |
| 114 | 114 | 0.923 |
| 115 | 115 | 0.391 |
| 116 | 116 | 0.0868 |
| 117 | 117 | 0.00282 |
| 118 | 118 | 0.488 |
| 119 | 119 | 0.169 |
| 12 | 12 | 0.593 |
| 120 | 120 | 0.726 |
| 121 | 121 | 0.821 |
| 122 | 122 | 0.577 |
| 123 | 123 | 0.0844 |
| 124 | 124 | 0.691 |
| 125 | 125 | 0.537 |
| 126 | 126 | 0.405 |
| 127 | 127 | 0.977 |
| 128 | 128 | 0.57 |
| 129 | 129 | 0.884 |
| 13 | 13 | 0.715 |
| 130 | 130 | 0.626 |
| 131 | 131 | 0.524 |
| 132 | 132 | 0.228 |
| 133 | 133 | 0.713 |
| 134 | 134 | 0.747 |
| 135 | 135 | 0.943 |
| 136 | 136 | 0.9 |
| 137 | 137 | 0.0375 |
| 138 | 138 | 0.752 |
| 139 | 139 | 0.159 |
| 14 | 14 | 0.68 |
| 140 | 140 | 0.315 |
| 141 | 141 | 0.887 |
| 142 | 142 | 0.626 |
| 143 | 143 | 0.00125 |
| 144 | 144 | 0.79 |
| 145 | 145 | 0.467 |
| 146 | 146 | 0.86 |
| 147 | 147 | 0.0152 |
| 148 | 148 | 0.295 |
| 149 | 149 | 0.532 |
| 15 | 15 | 0.253 |
| 150 | 150 | 0.81 |
| 151 | 151 | 0.608 |
| 152 | 152 | 0.557 |
| 153 | 153 | 0.926 |
| 154 | 154 | 0.518 |
| 155 | 155 | 0.0245 |
| 156 | 156 | 0.588 |
| 157 | 157 | 0.217 |
| 158 | 158 | 0.02 |
| 159 | 159 | 0.233 |
| 16 | 16 | 0.479 |
| 160 | 160 | 0.12 |
| 161 | 161 | 0.563 |
| 162 | 162 | 0.0138 |
| 163 | 163 | 0.388 |
| 164 | 164 | 0.18 |
| 165 | 165 | 0.644 |
| 166 | 166 | 0.294 |
| 167 | 167 | 0.346 |
| 168 | 168 | 0.471 |
| 169 | 169 | 0.145 |
| 17 | 17 | 0.707 |
| 18 | 18 | 0.89 |
| 19 | 19 | 0.032 |
| 2 | 2 | 0.308 |
| 20 | 20 | 0.286 |
| 21 | 21 | 0.843 |
| 22 | 22 | 0.348 |
| 23 | 23 | 0.54 |
| 24 | 24 | 0.7 |
| 25 | 25 | 0.105 |
| 26 | 26 | 0.989 |
| 27 | 27 | 0.67 |
| 28 | 28 | 0.531 |
| 29 | 29 | 0.0316 |
| 3 | 3 | 0.435 |
| 30 | 30 | 0.154 |
| 31 | 31 | 0.723 |
| 32 | 32 | 0.0282 |
| 33 | 33 | 0.191 |
| 34 | 34 | 0.396 |
| 35 | 35 | 0.302 |
| 36 | 36 | 0.0355 |
| 37 | 37 | 0.257 |
| 38 | 38 | 0.712 |
| 39 | 39 | 0.194 |
| 4 | 4 | 0.557 |
| 40 | 40 | 0.798 |
| 41 | 41 | 0.105 |
| 42 | 42 | 0.192 |
| 43 | 43 | 0.645 |
| 44 | 44 | 0.882 |
| 45 | 45 | 0.266 |
| 46 | 46 | 0.703 |
| 47 | 47 | 0.389 |
| 48 | 48 | 0.61 |
| 49 | 49 | 0.277 |
| 5 | 5 | 0.475 |
| 50 | 50 | 0.415 |
| 51 | 51 | 0.808 |
| 52 | 52 | 0.385 |
| 53 | 53 | 0.616 |
| 54 | 54 | 0.995 |
| 55 | 55 | 0.963 |
| 56 | 56 | 0.799 |
| 57 | 57 | 0.901 |
| 58 | 58 | 0.155 |
| 59 | 59 | 0.5 |
| 6 | 6 | 0.642 |
| 60 | 60 | 0.707 |
| 61 | 61 | 0.15 |
| 62 | 62 | 0.205 |
| 63 | 63 | 0.734 |
| 64 | 64 | 0.741 |
| 65 | 65 | 0.654 |
| 66 | 66 | 0.733 |
| 67 | 67 | 0.681 |
| 68 | 68 | 0.74 |
| 69 | 69 | 0.805 |
| 7 | 7 | 0.477 |
| 70 | 70 | 0.191 |
| 71 | 71 | 0.108 |
| 72 | 72 | 0.152 |
| 73 | 73 | 0.509 |
| 74 | 74 | 0.986 |
| 75 | 75 | 0.026 |
| 76 | 76 | 0.174 |
| 77 | 77 | 0.00821 |
| 78 | 78 | 0.575 |
| 79 | 79 | 0.472 |
| 8 | 8 | 0.415 |
| 80 | 80 | 0.00163 |
| 81 | 81 | 0.815 |
| 82 | 82 | 0.347 |
| 83 | 83 | 0.461 |
| 84 | 84 | 0.585 |
| 85 | 85 | 0.629 |
| 86 | 86 | 0.0737 |
| 87 | 87 | 0.845 |
| 88 | 88 | 0.892 |
| 89 | 89 | 0.0342 |
| 9 | 9 | 0.985 |
| 90 | 90 | 0.159 |
| 91 | 91 | 0.998 |
| 92 | 92 | 0.939 |
| 93 | 93 | 0.513 |
| 94 | 94 | 0.28 |
| 95 | 95 | 0.00457 |
| 96 | 96 | 0.594 |
| 97 | 97 | 0.455 |
| 98 | 98 | 0.346 |
| 99 | 99 | 3.7156e-6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13239
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011122 human CD4-positiveCD25-CD45RA- naive conventional T cells sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000898 (naive T cell)
0000895 (naive thymus-derived CD4-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011122 (human CD4-positiveCD25-CD45RA- naive conventional T cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)
CL:0002427 (resting double-positive thymocyte)
