FF:11792-124C1: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13215
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	13
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004924

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13215		CAGE		DRX008193		DRR009065

Accession ID Hg19

Library id		BAM		CTSS
CNhs13215		DRZ000490		DRZ001875

Accession ID Hg38

Library id		BAM		CTSS
CNhs13215		DRZ011840		DRZ013225

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0887
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.139
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.421
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0466
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0466
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.162
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0754
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0275
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.272
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.207
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.74
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.312
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0466
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0823
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0466
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.109
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0466
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.824
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.664
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.47
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.563
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.185
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.627
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.37
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.124
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.337
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.128
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.154
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0466
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.805
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.873
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0466
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.127
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13215

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.76451e-8
MA0003.1	MA0003.1	0.85
MA0004.1	MA0004.1	0.805
MA0006.1	MA0006.1	0.534
MA0007.1	MA0007.1	0.576
MA0009.1	MA0009.1	0.249
MA0014.1	MA0014.1	0.783
MA0017.1	MA0017.1	0.0929
MA0018.2	MA0018.2	0.885
MA0019.1	MA0019.1	0.512
MA0024.1	MA0024.1	0.0307
MA0025.1	MA0025.1	0.0802
MA0027.1	MA0027.1	0.602
MA0028.1	MA0028.1	1.6218e-5
MA0029.1	MA0029.1	0.495
MA0030.1	MA0030.1	0.385
MA0031.1	MA0031.1	0.48
MA0035.2	MA0035.2	0.0416
MA0038.1	MA0038.1	0.157
MA0039.2	MA0039.2	0.772
MA0040.1	MA0040.1	0.207
MA0041.1	MA0041.1	0.317
MA0042.1	MA0042.1	0.697
MA0043.1	MA0043.1	0.0482
MA0046.1	MA0046.1	0.0991
MA0047.2	MA0047.2	0.411
MA0048.1	MA0048.1	0.786
MA0050.1	MA0050.1	6.159e-7
MA0051.1	MA0051.1	0.0095
MA0052.1	MA0052.1	0.00323
MA0055.1	MA0055.1	0.918
MA0057.1	MA0057.1	0.994
MA0058.1	MA0058.1	0.937
MA0059.1	MA0059.1	0.381
MA0060.1	MA0060.1	0.415
MA0061.1	MA0061.1	0.0923
MA0062.2	MA0062.2	1.10158e-15
MA0065.2	MA0065.2	0.029
MA0066.1	MA0066.1	0.271
MA0067.1	MA0067.1	0.976
MA0068.1	MA0068.1	0.124
MA0069.1	MA0069.1	0.807
MA0070.1	MA0070.1	0.582
MA0071.1	MA0071.1	0.427
MA0072.1	MA0072.1	0.707
MA0073.1	MA0073.1	0.786
MA0074.1	MA0074.1	0.522
MA0076.1	MA0076.1	2.67799e-8
MA0077.1	MA0077.1	0.0421
MA0078.1	MA0078.1	0.903
MA0079.2	MA0079.2	0.494
MA0080.2	MA0080.2	1.08937e-12
MA0081.1	MA0081.1	0.0239
MA0083.1	MA0083.1	0.0438
MA0084.1	MA0084.1	0.894
MA0087.1	MA0087.1	0.448
MA0088.1	MA0088.1	0.0316
MA0090.1	MA0090.1	1.98398e-4
MA0091.1	MA0091.1	0.824
MA0092.1	MA0092.1	0.492
MA0093.1	MA0093.1	0.779
MA0099.2	MA0099.2	3.97943e-4
MA0100.1	MA0100.1	0.216
MA0101.1	MA0101.1	0.709
MA0102.2	MA0102.2	0.322
MA0103.1	MA0103.1	0.0643
MA0104.2	MA0104.2	0.179
MA0105.1	MA0105.1	3.65937e-5
MA0106.1	MA0106.1	0.808
MA0107.1	MA0107.1	0.253
MA0108.2	MA0108.2	3.46494e-14
MA0111.1	MA0111.1	0.055
MA0112.2	MA0112.2	0.169
MA0113.1	MA0113.1	0.915
MA0114.1	MA0114.1	0.154
MA0115.1	MA0115.1	0.389
MA0116.1	MA0116.1	1.87927e-5
MA0117.1	MA0117.1	0.781
MA0119.1	MA0119.1	0.489
MA0122.1	MA0122.1	0.817
MA0124.1	MA0124.1	0.828
MA0125.1	MA0125.1	0.723
MA0131.1	MA0131.1	0.259
MA0135.1	MA0135.1	0.0888
MA0136.1	MA0136.1	4.09859e-24
MA0137.2	MA0137.2	0.218
MA0138.2	MA0138.2	0.178
MA0139.1	MA0139.1	0.00516
MA0140.1	MA0140.1	0.0538
MA0141.1	MA0141.1	0.464
MA0142.1	MA0142.1	0.455
MA0143.1	MA0143.1	0.0998
MA0144.1	MA0144.1	0.24
MA0145.1	MA0145.1	0.796
MA0146.1	MA0146.1	0.163
MA0147.1	MA0147.1	0.152
MA0148.1	MA0148.1	0.989
MA0149.1	MA0149.1	0.0749
MA0150.1	MA0150.1	0.305
MA0152.1	MA0152.1	0.0278
MA0153.1	MA0153.1	0.105
MA0154.1	MA0154.1	0.0165
MA0155.1	MA0155.1	0.717
MA0156.1	MA0156.1	2.32561e-22
MA0157.1	MA0157.1	0.138
MA0159.1	MA0159.1	0.222
MA0160.1	MA0160.1	0.364
MA0162.1	MA0162.1	0.665
MA0163.1	MA0163.1	5.84504e-12
MA0164.1	MA0164.1	0.685
MA0258.1	MA0258.1	0.0763
MA0259.1	MA0259.1	0.387

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13215

Novel motif	Logo	P-value
1	1	0.113
10	10	0.0103
100	100	0.767
101	101	0.0955
102	102	0.522
103	103	0.16
104	104	0.679
105	105	0.154
106	106	0.596
107	107	0.478
108	108	0.675
109	109	0.0406
11	11	0.0402
110	110	0.411
111	111	0.384
112	112	0.122
113	113	0.474
114	114	0.238
115	115	0.116
116	116	0.582
117	117	0.0064
118	118	0.4
119	119	0.539
12	12	0.509
120	120	0.482
121	121	0.634
122	122	0.326
123	123	4.42326e-4
124	124	0.0599
125	125	0.978
126	126	0.434
127	127	0.377
128	128	0.663
129	129	0.161
13	13	0.415
130	130	0.889
131	131	0.803
132	132	0.959
133	133	0.247
134	134	0.702
135	135	0.748
136	136	0.657
137	137	0.0709
138	138	0.289
139	139	0.268
14	14	0.396
140	140	0.0213
141	141	0.655
142	142	0.952
143	143	0.00139
144	144	0.479
145	145	0.248
146	146	0.442
147	147	0.0258
148	148	0.0669
149	149	0.807
15	15	0.0998
150	150	0.463
151	151	0.6
152	152	0.329
153	153	0.982
154	154	0.724
155	155	0.0143
156	156	0.585
157	157	0.0644
158	158	0.289
159	159	0.383
16	16	0.623
160	160	0.559
161	161	0.175
162	162	0.166
163	163	0.448
164	164	0.118
165	165	0.183
166	166	0.797
167	167	0.269
168	168	0.2
169	169	0.348
17	17	0.872
18	18	0.611
19	19	0.609
2	2	0.909
20	20	0.758
21	21	0.312
22	22	0.989
23	23	0.54
24	24	0.586
25	25	0.0645
26	26	0.123
27	27	0.155
28	28	0.56
29	29	0.0176
3	3	0.0464
30	30	0.198
31	31	0.932
32	32	0.307
33	33	0.528
34	34	0.958
35	35	0.185
36	36	0.0248
37	37	0.229
38	38	0.666
39	39	0.318
4	4	0.609
40	40	0.348
41	41	0.485
42	42	0.0647
43	43	0.444
44	44	0.268
45	45	0.499
46	46	0.0895
47	47	0.0115
48	48	0.0349
49	49	0.161
5	5	0.565
50	50	0.786
51	51	0.609
52	52	0.298
53	53	0.216
54	54	0.806
55	55	0.552
56	56	0.465
57	57	0.206
58	58	0.111
59	59	0.31
6	6	0.673
60	60	0.514
61	61	0.0812
62	62	0.0481
63	63	0.514
64	64	0.128
65	65	0.916
66	66	0.819
67	67	0.924
68	68	0.688
69	69	0.864
7	7	0.243
70	70	0.0586
71	71	0.0351
72	72	0.0561
73	73	0.552
74	74	0.379
75	75	0.0162
76	76	0.434
77	77	0.754
78	78	0.0296
79	79	0.239
8	8	0.431
80	80	0.0948
81	81	0.42
82	82	0.139
83	83	0.614
84	84	0.196
85	85	0.705
86	86	0.168
87	87	0.362
88	88	0.749
89	89	0.682
9	9	0.761
90	90	0.0166
91	91	0.636
92	92	0.395
93	93	0.205
94	94	0.107
95	95	0.0103
96	96	0.0541
97	97	0.311
98	98	0.303
99	99	0.247

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13215

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004924
+|accession_numbers=CAGE;DRX008193;DRR009065;DRZ000490;DRZ001875;DRZ011840;DRZ013225
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Previously: CD4-positiveCD25-CD45RA- naive conventional T cells expanded, donor1. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:231090433..231090469,+!p1@SP140!1.88!74.56!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.80!61.64!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.68!63.11!STAT4;;chr2:192015750..192015793,-!p2@STAT4!1.61!52.46!STAT4;;chr4:57522598..57522664,-!p3@HOPX!1.59!37.62!HOPX;;chr4:57522674..57522699,-!p5@HOPX!1.57!36.49!HOPX;;chr2:231090471..231090504,+!p2@SP140!1.57!35.92!SP140;;chr20:50159198..50159299,-!p1@NFATC2!1.54!48.27!NFATC2;;chr7:50344251..50344288,+!p3@IKZF1!1.53!32.63!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.50!81.47!AKNA;;chr10:8096631..8096660,+!p1@GATA3!1.50!36.49!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.50!35.69!GATA3;;chr14:75988771..75988826,+!p1@BATF!1.47!37.62!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.47!35.24!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.87!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.45!27.31!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.43!26.06!KDM5D;;chr4:109087445..109087463,-!p1@LEF1!1.40!24.25!LEF1;;chr6:391743..391759,+!p1@IRF4!1.39!23.46!IRF4;;chr7:50343895..50343936,+!p5@IKZF1!1.38!23.12!IKZF1;;chr16:68119324..68119364,+!p1@NFATC3!1.37!96.88!NFATC3;;chr3:63953435..63953499,+!p1@ATXN7!1.37!22.66!ATXN7;;chr3:18480217..18480239,-!p3@SATB1!1.36!21.87!SATB1;;chr4:57522166..57522260,-!p2@HOPX!1.35!24.59!HOPX;;chr1:23857698..23857733,-!p1@E2F2!1.31!35.35!E2F2;;chr17:45810594..45810608,+!p1@TBX21!1.28!18.13!TBX21;;chr17:37934365..37934387,-!p2@IKZF3!1.24!16.54!IKZF3;;chr19:16435625..16435682,+!p1@KLF2!1.22!488.59!KLF2;;chr1:25291475..25291511,-!p2@RUNX3!1.22!15.64!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.20!93.93!ELF1;;chr19:19779619..19779670,+!p1@ZNF101!1.17!38.87!ZNF101;;chr1:25256756..25256774,-!p1@RUNX3!1.17!25.95!RUNX3;;chr20:56195474..56195506,-!p1@ZBP1!1.14!12.80!ZBP1;;chr11:128563948..128564003,+!p1@FLI1!1.13!149.57!FLI1;;chr16:79634624..79634642,-!p1@MAF!1.13!49.29!MAF;;chr16:79634595..79634620,-!p2@MAF!1.13!22.66!MAF;;chr4:57522513..57522548,-!p4@HOPX!1.13!12.58!HOPX;;chr16:88752889..88752921,-!p1@SNAI3!1.11!14.05!SNAI3;;chr7:77428066..77428132,+!p2@PHTF2!1.10!75.12!PHTF2;;chr19:19729477..19729542,-!p1@PBX4!1.10!24.93!PBX4;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.44!GFI1;;chr17:38020392..38020477,-!p1@IKZF3!1.06!10.42!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.04!52.80!RORA;;chr6:15249128..15249177,+!p4@JARID2!1.03!17.68!JARID2;;chr7:137620650..137620677,-!p3@CREB3L2!1.03!9.74!CREB3L2;;chr11:47236584..47236679,+!p1@DDB2!1.00!99.37!DDB2;;chr12:56415246..56415286,+!p2@IKZF4!1.00!9.06!IKZF4;;chr2:231090344..231090361,-!p3@SP110!1.00!8.95!SP110;;chr6:45390269..45390298,+!p5@RUNX2!0.99!14.84!RUNX2;;chr6:106546808..106546833,+!p3@PRDM1!0.98!10.76!PRDM1;;chr14:75988831..75988847,+!p2@BATF!0.98!8.61!BATF;;chr3:27763807..27763822,-!p1@EOMES!0.98!8.50!EOMES;;chr1:158978768..158978800,+!p8@IFI16!0.97!8.27!IFI16;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.27!ZFY;;chr21:36421535..36421610,-!p2@RUNX1!0.96!30.03!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.04!IKZF3;;chr11:128392085..128392232,-!p1@ETS1!0.94!265.60!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.93!19.38!CREM;;chr17:37934204..37934241,-!p3@IKZF3!0.93!7.59!IKZF3;;chr6:45390300..45390335,+!p4@RUNX2!0.92!11.67!RUNX2;;chr20:52226313..52226350,-!p3@ZNF217!0.92!7.25!ZNF217;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.15!ZNF92;;chr1:158979686..158979745,+!p1@IFI16!0.90!236.48!IFI16;;chr16:88752861..88752884,-!p2@SNAI3!0.90!7.03!SNAI3;;chr8:60031619..60031676,-!p1@TOX!0.89!15.07!TOX;;chr21:36421147..36421193,-!p10@RUNX1!0.89!6.80!RUNX1;;chr2:70142232..70142251,+!p1@MXD1!0.88!38.87!MXD1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.88!37.96!LRRFIP1;;chr7:21467802..21467840,+!p3@SP4!0.88!14.05!SP4;;chr3:18487057..18487105,-!p4@SATB1!0.88!6.57!SATB1;;chr3:71179699..71179744,-!p2@FOXP1!0.87!51.22!FOXP1;;chr10:8095593..8095625,+!p3@GATA3!0.87!7.59!GATA3;;chr7:137620684..137620711,-!p4@CREB3L2!0.87!6.35!CREB3L2;;chr20:56195525..56195556,-!p2@ZBP1!0.87!6.35!ZBP1;;chr21:36421347..36421380,-!p8@RUNX1!0.86!6.23!RUNX1;;chr4:57522701..57522712,-!p10@HOPX!0.85!6.01!HOPX;;chr4:185395633..185395651,-!p2@IRF2!0.83!9.52!IRF2;;chrX:49121165..49121179,-!p1@FOXP3!0.81!5.44!FOXP3;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.28!NFATC3;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.62!HIC1;;chr4:109088940..109089037,-!p4@LEF1!0.79!5.10!LEF1;;chr6:106546731..106546755,+!p5@PRDM1!0.79!5.10!PRDM1;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.99!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!0.78!4.99!IKZF3;;chr2:231084659..231084721,-!p1@SP110!0.77!126.91!SP110;;chr11:128392273..128392308,-!p2@ETS1!0.77!22.55!ETS1;;chr13:41593493..41593506,-!p8@ELF1!0.77!4.87!ELF1;;chrY:21906623..21906637,-!p3@KDM5D!0.77!4.87!KDM5D;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.80!KLF8;;chr4:109089901..109089930,-!p3@LEF1!0.75!4.65!LEF1;;chr5:133450365..133450444,+!p1@TCF7!0.74!22.89!TCF7;;chr5:321810..321877,+!p1@AHRR!0.74!15.64!AHRR;;chr13:74708246..74708264,-!p8@KLF12!0.74!5.10!KLF12;;chr5:176738887..176738934,-!p1@MXD3!0.73!32.18!MXD3;;chr16: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11792-124C1
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11792-124C1
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13215
+|library_id_phase_based=2:CNhs13215
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11792
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11792
 |name=CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13215,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=3.219
 |sample_age=25
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=ELF1,2,4:2.4225797992;CDX1,2,4:2.36152109406;PAX3,7:2.02955706361;TLX2:1.97495991439;RUNX1..3:1.80823656688;RORA:1.71028300915;PAX4:1.44400919428;ETS1,2:1.38177498649;POU1F1:1.32997559008;PDX1:1.26214604126;SPI1:1.2572236128;STAT1,3:1.25025715905;GATA6:1.24581861593;E2F1..5:1.24316591859;ZBTB16:1.14427908245;DMAP1_NCOR{1,2}_SMARC:1.13162252043;IKZF2:0.995564317624;ELK1,4_GABP{A,B1}:0.99351125788;IRF1,2:0.934219235629;T:0.919102345962;SPIB:0.891876347594;YY1:0.870388825265;PBX1:0.810769520764;NFY{A,B,C}:0.77872957115;FOXA2:0.743621136257;PITX1..3:0.723150673655;FOX{F1,F2,J1}:0.718544149635;BREu{core}:0.716569585125;CRX:0.699200147735;POU2F1..3:0.622188965876;LEF1_TCF7_TCF7L1,2:0.616154337024;TGIF1:0.61105031882;FOXP1:0.593509608725;NKX6-1,2:0.592124060955;MYB:0.573887419428;NKX2-2,8:0.55223844389;PAX8:0.547027498561;NANOG{mouse}:0.453961723694;IRF7:0.434031238455;MYOD1:0.429398501394;FOXO1,3,4:0.407153723862;NKX3-1:0.398875009398;NRF1:0.341411297461;SNAI1..3:0.324741621181;FOXM1:0.319624909439;BPTF:0.306981226276;ZEB1:0.299655584488;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.275572082126;OCT4_SOX2{dimer}:0.265882398857;RFX2..5_RFXANK_RFXAP:0.261777491931;ATF5_CREB3:0.246975281701;CREB1:0.243028612516;LMO2:0.218497393815;NR5A1,2:0.208572686042;STAT5{A,B}:0.183060426671;ZNF143:0.162951928202;SREBF1,2:0.156525542056;SPZ1:0.152270212342;FOX{D1,D2}:0.151274635406;AIRE:0.142274490519;CUX2:0.124698292138;HMX1:0.118238225192;HOX{A6,A7,B6,B7}:0.0982188030934;POU3F1..4:0.0978713199498;STAT2,4,6:0.0735893297243;FOX{I1,J2}:0.065328192823;SOX5:0.0312451627311;ALX1:0.00495541391476;FOXN1:-0.0230689976995;NFKB1_REL_RELA:-0.0409055225295;GFI1:-0.0560383240444;NR3C1:-0.0736799319077;PAX2:-0.0903577577763;GCM1,2:-0.0910314572599;HES1:-0.0933115389313;NKX2-1,4:-0.117062127864;JUN:-0.119819618523;AHR_ARNT_ARNT2:-0.141000178831;TFDP1:-0.155468566125;EP300:-0.160507880565;PAX6:-0.164526037412;HNF4A_NR2F1,2:-0.181668219889;TOPORS:-0.194332227294;PRRX1,2:-0.212845912842;NFATC1..3:-0.227735659826;TAL1_TCF{3,4,12}:-0.23318023217;NFIL3:-0.236948116103;FOXD3:-0.245243066725;RXRA_VDR{dimer}:-0.26017118765;SMAD1..7,9:-0.272122435622;GLI1..3:-0.274660697923;AR:-0.288301781438;ZNF148:-0.296491567897;NFE2L1:-0.309885736413;ATF4:-0.318511990286;HNF1A:-0.349609679472;NR1H4:-0.379115776318;RREB1:-0.388351379183;EVI1:-0.389934137742;HAND1,2:-0.415326012888;ZNF423:-0.426949778269;POU5F1:-0.428440522956;MYFfamily:-0.431128257173;SOX2:-0.433534868007;FOXQ1:-0.438131373726;HMGA1,2:-0.439580113102;ARID5B:-0.440268658138;VSX1,2:-0.464111085295;SOX{8,9,10}:-0.475945155446;ATF2:-0.478694303029;HOXA9_MEIS1:-0.486701938644;ADNP_IRX_SIX_ZHX:-0.489684832136;NKX2-3_NKX2-5:-0.510251975502;ZNF384:-0.524965854372;FOXP3:-0.526428299005;RBPJ:-0.548466043177;PPARG:-0.553919853902;ATF6:-0.566257832951;RFX1:-0.566496712603;BACH2:-0.570455727829;ZNF238:-0.571437266393;SRF:-0.574481660626;NFIX:-0.576535207054;NFE2L2:-0.581957109905;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.589400106455;CEBPA,B_DDIT3:-0.593482304493;FOS_FOS{B,L1}_JUN{B,D}:-0.604473419897;TFCP2:-0.621479883174;NFE2:-0.628712506912;TFAP4:-0.63240555448;ESR1:-0.64814802849;FOSL2:-0.696267014346;HLF:-0.711557056722;NHLH1,2:-0.712677301859;TP53:-0.737054020332;HBP1_HMGB_SSRP1_UBTF:-0.75193336092;NANOG:-0.754396555554;PAX5:-0.784863457083;UFEwm:-0.792441220222;REST:-0.794309858934;ALX4:-0.802971727954;ESRRA:-0.807918499612;DBP:-0.815819468543;ONECUT1,2:-0.827904147989;XCPE1{core}:-0.883599924917;LHX3,4:-0.889661510277;MEF2{A,B,C,D}:-0.896761673748;ZBTB6:-0.90936508934;CDC5L:-0.934340491975;MED-1{core}:-0.939824504668;HOX{A5,B5}:-0.973799782254;MZF1:-0.974574666273;MYBL2:-0.984708508093;TBX4,5:-1.03093035664;GFI1B:-1.04419037794;SOX17:-1.05084037165;MTE{core}:-1.08458474303;ZFP161:-1.11059656206;NR6A1:-1.11110666689;GATA4:-1.11312469188;KLF4:-1.11418270695;MAFB:-1.12147562741;HIF1A:-1.13885659483;EBF1:-1.14250238556;MAZ:-1.1593502465;PRDM1:-1.1900718137;GTF2I:-1.21018412467;HOX{A4,D4}:-1.22547153947;HSF1,2:-1.24396222762;EGR1..3:-1.26478206479;MTF1:-1.2657690984;POU6F1:-1.27340077154;TEF:-1.31277077181;GZF1:-1.32634814926;NKX3-2:-1.32664433237;EN1,2:-1.38652391648;GTF2A1,2:-1.39009122427;TFAP2B:-1.43396329261;bHLH_family:-1.44501274323;PATZ1:-1.44676798902;HIC1:-1.45503082563;TBP:-1.46404935128;ZIC1..3:-1.47356279401;RXR{A,B,G}:-1.58045686094;TFAP2{A,C}:-1.58151443374;TEAD1:-1.58979762693;SP1:-1.64935541454;TLX1..3_NFIC{dimer}:-1.7761799137;XBP1:-1.79941677996;PAX1,9:-1.80675293102;IKZF1:-1.98534804817;FOXL1:-2.03566617497
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11792-124C1;search_select_hide=table117:FF:11792-124C1
 }}

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FF:11792-124C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0