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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005907
|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874;DRZ011839;DRZ013224
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Changed from previous label. TODO: full classification
|comment=Changed from previous label. TODO: full classification
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.36!229.98!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.32!208.03!LEF1;;chr3:63953435..63953499,+!p1@ATXN7!2.05!111.85!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.99!422.32!TCF7;;chr6:91006518..91006570,-!p1@BACH2!1.97!203.84!BACH2;;chr7:50343634..50343717,+!p2@IKZF1!1.91!80.49!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.88!102.44!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.77!58.54!FOXP1;;chr5:133451347..133451358,+!p3@TCF7!1.75!55.40!TCF7;;chr4:109090075..109090095,-!p2@LEF1!1.74!54.36!LEF1;;chr3:18486354..18486377,-!p2@SATB1!1.73!65.86!SATB1;;chr19:54058073..54058088,+!p1@ZNF331!1.68!47.04!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.67!61.68!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.63!41.81!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.62!1232.47!KLF2;;chr6:91006575..91006602,-!p2@BACH2!1.61!57.49!BACH2;;chr2:192015750..192015793,-!p2@STAT4!1.61!52.27!STAT4;;chr7:50343895..50343936,+!p5@IKZF1!1.61!39.72!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.60!973.23!TSC22D3;;chr2:231090433..231090469,+!p1@SP140!1.58!36.59!SP140;;chr19:54041669..54041697,+!p2@ZNF331!1.55!34.50!ZNF331;;chr14:99738138..99738163,-!p1@BCL11B!1.54!33.45!BCL11B;;chr2:97202991..97203043,+!p3@ARID5A!1.52!32.41!ARID5A;;chr9:3525727..3525828,-!p2@RFX3!1.51!77.36!RFX3;;chr7:50344251..50344288,+!p3@IKZF1!1.47!28.22!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.47!28.22!IKZF1;;chr19:45971246..45971265,+!p1@FOSB!1.45!487.14!FOSB;;chr10:8096631..8096660,+!p1@GATA3!1.45!32.41!GATA3;;chr17:38497662..38497713,+!p4@RARA!1.45!31.36!RARA;;chr7:50344289..50344323,+!p1@IKZF1!1.45!27.18!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.99!AKNA;;chrX:101186981..101187030,-!p1@ZMAT1!1.38!73.17!ZMAT1;;chr4:109089901..109089930,-!p3@LEF1!1.38!23.00!LEF1;;chr8:123793988..123794016,+!p1@ZHX2!1.35!37.63!ZHX2;;chr14:64970670..64970712,-!p3@ZBTB25!1.34!44.95!ZBTB25;;chr21:36421535..36421610,-!p2@RUNX1!1.32!68.99!RUNX1;;chr6:91006503..91006517,-!p3@BACH2!1.30!18.82!BACH2;;chr3:18487057..18487105,-!p4@SATB1!1.30!18.82!SATB1;;chr4:109089573..109089585,-!p8@LEF1!1.30!18.82!LEF1;;chr11:128392273..128392308,-!p2@ETS1!1.29!77.36!ETS1;;chr19:19779619..19779670,+!p1@ZNF101!1.28!50.18!ZNF101;;chr2:157189180..157189290,-!p1@NR4A2!1.27!89.90!NR4A2;;chr10:8096772..8096787,+!p2@GATA3!1.27!20.91!GATA3;;chr3:71542684..71542720,-!p18@FOXP1!1.27!17.77!FOXP1;;chr2:100759037..100759058,-!p2@AFF3!1.25!16.73!AFF3;;chr3:18480217..18480239,-!p3@SATB1!1.25!16.73!SATB1;;chr4:109086281..109086319,-!p9@LEF1!1.25!16.73!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!1.24!24.04!NFATC2;;chr4:38665769..38665801,+!p2@KLF3!1.22!139.03!KLF3;;chr19:12444440..12444455,-!p1@ZNF563!1.22!27.18!ZNF563;;chr3:71542651..71542683,-!p22@FOXP1!1.22!15.68!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.22!15.68!NR3C2;;chr19:54041645..54041661,+!p5@ZNF331!1.22!15.68!ZNF331;;chr6:391743..391759,+!p1@IRF4!1.22!15.68!IRF4;;chr13:41240717..41240735,-!p2@FOXO1!1.21!101.40!FOXO1;;chr1:25256756..25256774,-!p1@RUNX3!1.21!28.22!RUNX3;;chr10:35416142..35416169,+!p3@CREM!1.20!38.68!CREM;;chr19:45972701..45972774,+!p2@FOSB!1.19!19.86!FOSB;;chr4:109088089..109088101,-!p11@LEF1!1.19!14.63!LEF1;;chr19:38085768..38085821,+!p1@ZNF540!1.18!20.91!ZNF540;;chr14:75745523..75745537,+!p1@FOS!1.17!1641.21!FOS;;chr11:128392085..128392232,-!p1@ETS1!1.16!444.28!ETS1;;chr10:35484053..35484076,+!p1@CREM!1.16!33.45!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.14!81.54!ELF1;;chr10:135121763..135121783,+!p5@ZNF511!1.13!12.54!ZNF511;;chr2:100759010..100759035,-!p1@AFF3!1.13!12.54!AFF3;;chr4:109090054..109090073,-!p7@LEF1!1.13!12.54!LEF1;;chr19:54041603..54041615,+!p10@ZNF331!1.13!12.54!ZNF331;;chr19:12902289..12902307,+!p1@JUNB!1.12!2781.69!JUNB;;chr16:3313791..3313834,+!p2@ZNF263!1.11!26.13!ZNF263;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.10!64.81!ZNF10;;chr17:38020516..38020544,-!p5@IKZF3!1.10!11.50!IKZF3;;chr2:157189617..157189667,-!p4@NR4A2!1.10!11.50!NR4A2;;chr3:18480173..18480189,-!p6@SATB1!1.10!11.50!SATB1;;chr4:109088940..109089037,-!p4@LEF1!1.10!11.50!LEF1;;chr16:89787937..89787971,+!p1@ZNF276!1.09!29.27!ZNF276;;chr19:16435523..16435619,+!p2@KLF2!1.09!15.68!KLF2;;chr3:18466787..18466839,-!p1@SATB1!1.08!50.18!SATB1;;chr2:97202480..97202499,+!p1@ARID5A!1.07!109.76!ARID5A;;chr8:81397846..81397860,+!p3@ZBTB10!1.07!13.59!ZBTB10;;chr16:68119324..68119364,+!p1@NFATC3!1.06!47.04!NFATC3;;chr3:71353892..71353928,-!p31@FOXP1!1.06!10.45!FOXP1;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.45!ZBP1;;chrY:21906623..21906637,-!p3@KDM5D!1.06!10.45!KDM5D;;chr13:74707894..74707947,-!p6@KLF12!1.05!11.50!KLF12;;chr13:74708246..74708264,-!p8@KLF12!1.05!11.50!KLF12;;chr11:67007548..67007610,+!p3@KDM2A!1.04!74.22!KDM2A;;chr14:64971288..64971316,-!p2@ZBTB25!1.03!30.32!ZBTB25;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.54!TSHZ2;;chr14:99738059..99738086,-!p2@BCL11B!1.02!9.41!BCL11B;;chr7:50343800..50343811,+!p8@IKZF1!1.02!9.41!IKZF1;;chr10:135121488..135121501,+!p8@ZNF511!1.02!9.41!ZNF511;;chr3:71542747..71542766,-!p34@FOXP1!1.02!9.41!FOXP1;;chr4:149366111..149366128,-!p7@NR3C2!1.02!9.41!NR3C2;;chr17:36861675..36861697,+!p3@MLLT6!1.01!21.95!MLLT6;;chr9:102584262..102584276,+!p1@NR4A3!1.01!20.91!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!1.01!12.54!THAP2;;chr18:77160282..77160343,+!p2@NFATC1!1.00!57.49!NFATC1;;chr3:114819124..114819200,-!p3@ZBTB20!0.99!20.91!ZBTB20;;chr2:43453734..43453751,-!p1@ZFP36L2!0.98!938.73!ZFP36L2;;chr15:60884706..60884743,-!p1@RORA!0.98!44.95!RORA;;chr7:64126503..64126528,+!p1@ZNF107!0.97!60.63!ZNF107;;chr2:148778973..148779035,+!p3@MBD5!0.97!21.95!MBD5;;chr15:60884747..60884774,-!p3@RORA!0.97!20.91!RORA;;chr8:41909982..41910009,-!p2@KAT6A!0.97!9.41!KAT6A;;chr5:133477905..133477956,+!p5@TCF7!0.97!8.36!TCF7;;chr17:38020392..38020477,-!p1@IKZF3!0.97!8.36!IKZF3;;chr19:16435423..16435484,+!p5@KLF2!0.97!8.36!KLF2;;chr9:20620829..20620848,-!p7@MLLT3!0.97!8.36!MLLT3;;chr20:51589835..51589848,+!p5@TSHZ2!0.97!8.36!TSHZ2;;chr4:149363475..149363492,-!p2@NR3C2!0.97!8.36!NR3C2;;chr7:21467674..21467727,+!p1@SP4!0.96!33.45!SP4;;chr1:8585945..8586056,-!p3@RERE!0.96!28.22!RERE;;chr19:19729477..19729542,-!p1@PBX4!0.96!17.77!PBX4;;chr19:58694742..58694800,+!p2@ZNF274!0.95!33.45!ZNF274;;chr19:52674696..52674758,-!p1@ZNF836!0.95!24.04!ZNF836;;chr11:128563948..128564003,+!p1@FLI1!0.94!97.22!FLI1;;chr2:208394817..208394834,+!p3@CREB1!0.94!32.41!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.32!TSC22D3;;chr1:45805693..45805718,+!p3@TOE1!0.93!16.73!TOE1;;chr8:81397820..81397836,+!p2@ZBTB10!0.93!9.41!ZBTB10;;chr5:131826457..131826514,-!p1@IRF1!0.92!296.88!IRF1;;chr3:23986824..23986848,+!p2@NR1D2!0.92!42.86!NR1D2;;chr19:12405606..12405629,-!p2@ZNF44!0.92!14.63!ZNF44;;chr9:117150303..117150312,-!p3@AKNA!0.92!9.41!AKNA;;chr7:50344144..50344157,+!p6@IKZF1!0.92!7.32!IKZF1;;chr4:109089996..109090012,-!p5@LEF1!0.92!7.32!LEF1;;chr19:45972203..45972226,+!p5@FOSB!0.92!7.32!FOSB;;chr19:54041574..54041589,+!p6@ZNF331!0.92!7.32!ZNF331;;chr1:92951607..92951661,-!p1@GFI1!0.92!7.32!GFI1;;chr2:208031542..208031595,-!p2@KLF7!0.91!52.27!KLF7;;chr6:143266297..143266356,-!p1@HIVEP2!0.91!35.54!HIVEP2;;chr6:12008986..12009016,+!p3@HIVEP1!0.91!23.00!HIVEP1;;chr4:38665810..38665827,+!p1@KLF3!0.90!105.58!KLF3;;chr15:31619326..31619390,+!p2@KLF13!0.90!84.67!KLF13;;chr20:44600496..44600541,-!p2@ZNF335!0.90!18.82!ZNF335;;chr13:41240737..41240787,-!p1@FOXO1!0.89!84.67!FOXO1;;chr19:21512202..21512225,-!p1@ZNF708!0.89!36.59!ZNF708;;chr6:15249128..15249177,+!p4@JARID2!0.89!12.54!JARID2;;chr1:41827095..41827155,+!p1@FOXO6!0.89!9.41!FOXO6;;chr13:74708269..74708291,-!p7@KLF12!0.89!9.41!KLF12;;chr14:69262947..69262986,-!p3@ZFP36L1!0.89!8.36!ZFP36L1;;chr13:74708029..74708077,-!p2@KLF12!0.88!19.86!KLF12;;chrX:106960221..106960236,-!p3@TSC22D3!0.88!18.82!TSC22D3;;chr9:114287433..114287513,+!p1@ZNF483!0.88!17.77!ZNF483;;chr19:38085633..38085706,-!p1@ZNF571!0.88!17.77!ZNF571;;chr7:21467642..21467671,+!p2@SP4!0.88!15.68!SP4;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.45!NR4A3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.87!351.24!NFKBIZ;;chr3:71179699..71179744,-!p2@FOXP1!0.87!51.22!FOXP1;;chr17:40440481..40440550,+!p1@STAT5A!0.87!49.13!STAT5A;;chr19:20748574..20748599,-!p1@ZNF737!0.87!40.77!ZNF737;;chr19:12405645..12405685,-!p1@ZNF44!0.87!24.04!ZNF44;;chr9:3525867..3525902,-!p3@RFX3!0.87!23.00!RFX3;;chr9:20622444..20622468,-!p2@MLLT3!0.87!21.95!MLLT3;;chr14:65569101..65569119,-!p3@MAX!0.86!20.91!MAX;;chr14:99737850..99737852,-!p3@BCL11B!0.86!6.27!BCL11B;;chr17:38020481..38020506,-!p7@IKZF3!0.86!6.27!IKZF3;;chr17:38020557..38020572,-!p4@IKZF3!0.86!6.27!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.86!6.27!KDM5D;;chr19:38183138..38183157,-!p2@ZNF781!0.86!6.27!ZNF781;;chr20:56195474..56195506,-!p1@ZBP1!0.86!6.27!ZBP1;;chr10:35416125..35416138,+!p10@CREM!0.85!7.32!CREM;;chr14:90085458..90085557,-!p1@FOXN3!0.84!66.90!FOXN3;;chr18:47814186..47814232,-!p2@CXXC1!0.84!12.54!CXXC1;;chr17:36861735..36861755,+!p4@MLLT6!0.84!10.45!MLLT6;;chr9:20621927..20621996,-!p3@MLLT3!0.84!10.45!MLLT3;;chr19:49140609..49140643,-!p1@DBP!0.83!34.50!DBP;;chr5:172483347..172483407,+!p1@C5orf41!0.82!44.95!CREBRF;;chr5:132299339..132299359,-!p4@AFF4!0.82!28.22!AFF4;;chr2:231084659..231084721,-!p1@SP110!0.81!136.94!SP110;;chr11:128392309..128392350,-!p3@ETS1!0.81!13.59!ETS1;;chr12:133562945..133562958,+!p2@ZNF26!0.81!10.45!ZNF26;;chr10:104154246..104154347,+!p3@NFKB2!0.80!35.54!NFKB2;;chr19:37096139..37096170,-!p2@ZNF529!0.80!15.68!ZNF529;;chr14:75988771..75988826,+!p1@BATF!0.80!7.32!BATF;;chr6:35227247..35227280,+!p3@ZNF76!0.80!7.32!ZNF76;;chr9:20622478..20622525,-!p1@MLLT3!0.79!43.90!MLLT3;;chr7:64363638..64363667,+!p1@ZNF273!0.79!28.22!ZNF273;;chr19:35455110..35455149,-!p1@ZNF792!0.79!10.45!ZNF792;;chr17:56565257..56565283,-!p2@HSF5!0.79!5.23!HSF5;;chr19:12405588..12405595,-!p4@ZNF44!0.79!5.23!ZNF44;;chr5:133473765..133473784,+!p7@TCF7!0.79!5.23!TCF7;;chr6:152011654..152011682,+!p1@ESR1!0.79!5.23!ESR1;;chr7:137620684..137620711,-!p4@CREB3L2!0.79!5.23!CREB3L2;;c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19:14800849..14800917,+!p1@ZNF333!0.38!13.59!ZNF333;;chr7:99156434..99156510,+!p2@ZNF655!0.38!12.54!ZNF655;;chr19:35264089..35264146,-!p1@ZNF599!0.38!10.45!ZNF599;;chr19:56915668..56915732,+!p1@ZNF583!0.38!7.32!ZNF583;;chr3:150126136..150126158,+!p4@TSC22D2!0.38!7.32!TSC22D2;;chr17:42298339..42298361,-!p5@UBTF!0.38!4.18!UBTF;;chr19:52408227..52408243,-!p2@ZNF649!0.38!4.18!ZNF649;;chr12:53848505..53848532,+!p4@PCBP2!0.38!4.18!PCBP2;;chr14:74386613..74386616,+!p7@ZNF410!0.38!2.09!ZNF410;;chr3:23986762..23986821,+!p1@NR1D2!0.37!32.41!NR1D2;;chr3:101395963..101395993,-!p1@ZBTB11!0.37!31.36!ZBTB11;;chr19:58609577..58609628,-!p1@ZSCAN18!0.37!26.13!ZSCAN18;;chr4:106068026..106068084,+!p1@TET2!0.37!18.82!TET2;;chr5:178286925..178287007,+!p1@ZNF354B!0.37!11.50!ZNF354B;;chr19:53030906..53030952,+!p1@ZNF808!0.37!7.32!ZNF808;;chr19:53758094..53758147,-!p1@ZNF677!0.37!7.32!ZNF677;;chr1:117602932..117602973,+!p1@TTF2!0.37!7.32!TTF2;;chr18:72922743..72922761,+!p3@TSHZ1!0.37!6.27!TSHZ1;;chr7:148892557..148892580,+!p4@ZNF282!0.37!5.23!ZNF282;;chr19:35225078..35225120,+!p2@ZNF181!0.37!4.18!ZNF181;;chr17:36873780..36873800,+!p5@MLLT6!0.37!2.09!MLLT6;;chr19:12551824..12551846,-!p2@ZNF443!0.37!2.09!ZNF443;;chr12:125052195..125052212,-!p11@NCOR2!0.37!2.09!NCOR2;;chr12:133613902..133613924,+!p4@ZNF84!0.37!2.09!ZNF84;;chr6:136599737..136599767,-!p2@BCLAF1!0.37!2.09!BCLAF1;;chr19:57078386..57078407,+!p3@ZNF470!0.37!2.09!ZNF470;;chr1:45805788..45805801,+!p6@TOE1!0.37!2.09!TOE1;;chr1:6640110..6640130,+!p2@ZBTB48!0.37!2.09!ZBTB48;;chr20:306221..306232,+!p4@SOX12!0.37!2.09!SOX12;;chr7:64467057..64467078,-!p1@ZNF117!0.36!38.68!ZNF117;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.36!29.27!LCOR;;chr6:7107939..7107993,+!p1@RREB1!0.36!24.04!RREB1;;chr2:217277169..217277266,+!p1@SMARCAL1!0.36!20.91!SMARCAL1;;chr12:53574464..53574539,+!p1@ZNF740!0.36!19.86!ZNF740;;chr17:40897043..40897087,-!p1@EZH1!0.36!17.77!EZH1;;chr22:21356378..21356422,-!p2@THAP7!0.36!17.77!THAP7;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.36!15.68!ZNF564;;chr16:1662351..1662442,+!p1@CRAMP1L!0.36!14.63!CRAMP1L;;chr3:40518599..40518664,+!p1@ZNF619!0.36!11.50!ZNF619;;chr4:140005341..140005411,-!p3@ELF2!0.36!10.45!ELF2;;chr1:249153268..249153298,-!p1@ZNF692!0.36!10.45!ZNF692;;chr19:58662139..58662182,-!p1@ZNF329!0.36!9.41!ZNF329;;chr6:134274295..134274308,+!p2@TBPL1!0.36!6.27!TBPL1;;chr19:54041382..54041437,+!p3@ZNF331!0.36!5.23!ZNF331;;chr10:38146510..38146576,-!p1@ZNF248!0.36!5.23!ZNF248;;chr19:8942909..8942953,-!p2@ZNF558!0.36!4.18!ZNF558;;chr7:129251614..129251630,+!p2@NRF1!0.36!4.18!NRF1;;chr4:76439649..76439662,+!p2@THAP6!0.36!4.18!THAP6;;chr5:142784101..142784130,-!p4@NR3C1!0.36!3.14!NR3C1;;chr1:158979680..158979683,+!p9@IFI16!0.36!2.09!IFI16;;chr1:27023383..27023416,+!p7@ARID1A!0.36!2.09!ARID1A;;chr19:37341260..37341284,+!p2@ZNF345!0.36!2.09!ZNF345;;chr7:127032741..127032777,-!p1@ZNF800!0.35!71.08!ZNF800;;chrX:153363125..153363182,-!p1@MECP2!0.35!54.36!MECP2;;chr18:47814032..47814079,-!p1@CXXC1!0.35!37.63!CXXC1;;chr19:8579030..8579061,-!p1@ZNF414!0.35!32.41!ZNF414;;chr19:37808778..37808827,+!p1@HKR1!0.35!21.95!HKR1;;chr16:2273558..2273637,+!p1@E4F1!0.35!18.82!E4F1;;chr6:35310312..35310359,+!p1@PPARD!0.35!17.77!PPARD;;chr19:40562072..40562143,-!p1@ZNF780B!0.35!17.77!ZNF780B;;chr19:58427951..58427984,-!p1@ZNF417!0.35!13.59!ZNF417;;chr13:27998831..27998851,+!p2@GTF3A!0.35!11.50!GTF3A;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.45!ZNF500;;chr19:12175535..12175554,+!p1@ZNF844!0.35!10.45!ZNF844;;chr17:16472486..16472533,-!p1@ZNF287!0.35!9.41!ZNF287;;chr2:174830564..174830605,-!p3@SP3!0.35!9.41!SP3;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.35!8.36!ZKSCAN4;;chr8:42698194..42698239,-!p2@THAP1!0.35!8.36!THAP1;;chr3:101395936..101395962,-!p2@ZBTB11!0.35!7.32!ZBTB11;;chr19:58111241..58111292,+!p1@ZNF530!0.35!6.27!ZNF530;;chrX:106959661..106959763,-!p4@TSC22D3!0.35!5.23!TSC22D3;;chr19:58071166..58071189,-!p2@ZNF550!0.35!4.18!ZNF550;;chr19:58951496..58951539,-!p1@ZNF132!0.35!4.18!ZNF132;;chr1:249153114..249153175,-!p3@ZNF692!0.35!3.14!ZNF692;;chr20:52210368..52210384,-!p1@ZNF217!0.35!3.14!ZNF217;;chr19:53324884..53324886,-!p1@ZNF28!0.35!2.09!ZNF28;;chr14:62213827..62213853,+!p6@HIF1A!0.35!2.09!HIF1A;;chr2:191878874..191878938,-!p1@STAT1!0.34!107.67!STAT1;;chr2:169312725..169312810,+!p1@CERS6!0.34!48.09!CERS6;;chr3:14989076..14989113,+!p1@NR2C2!0.34!40.77!NR2C2;;chr4:76439665..76439699,+!p1@THAP6!0.34!27.18!THAP6;;chr3:129158715..129158766,-!p2@MBD4!0.34!18.82!MBD4;;chr5:142784003..142784065,-!p2@NR3C1!0.34!15.68!NR3C1;;chr18:45456930..45456967,-!p2@SMAD2!0.34!10.45!SMAD2;;chr19:57922521..57922550,+!p1@ZNF17!0.34!7.32!ZNF17;;chr4:57775059..57775139,+!p2@REST!0.34!6.27!REST;;chrX:24167548..24167617,+!p2@ZFX!0.34!5.23!ZFX;;chr3:107241882..107241904,+!p2@BBX!0.34!4.18!BBX;;chr11:615570..615721,-!p2@IRF7!0.34!3.14!IRF7;;chr12:53614155..53614187,-!p3@RARG!0.34!3.14!RARG;;chr19:12405689..12405707,-!p3@ZNF44!0.34!3.14!ZNF44;;chr19:36909484..36909525,-!p2@ZFP82!0.34!3.14!ZFP82;;chr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19:14800849..14800917,+!p1@ZNF333!0.38!13.59!ZNF333;;chr7:99156434..99156510,+!p2@ZNF655!0.38!12.54!ZNF655;;chr19:35264089..35264146,-!p1@ZNF599!0.38!10.45!ZNF599;;chr19:56915668..56915732,+!p1@ZNF583!0.38!7.32!ZNF583;;chr3:150126136..150126158,+!p4@TSC22D2!0.38!7.32!TSC22D2;;chr17:42298339..42298361,-!p5@UBTF!0.38!4.18!UBTF;;chr19:52408227..52408243,-!p2@ZNF649!0.38!4.18!ZNF649;;chr12:53848505..53848532,+!p4@PCBP2!0.38!4.18!PCBP2;;chr14:74386613..74386616,+!p7@ZNF410!0.38!2.09!ZNF410;;chr3:23986762..23986821,+!p1@NR1D2!0.37!32.41!NR1D2;;chr3:101395963..101395993,-!p1@ZBTB11!0.37!31.36!ZBTB11;;chr19:58609577..58609628,-!p1@ZSCAN18!0.37!26.13!ZSCAN18;;chr4:106068026..106068084,+!p1@TET2!0.37!18.82!TET2;;chr5:178286925..178287007,+!p1@ZNF354B!0.37!11.50!ZNF354B;;chr19:53030906..53030952,+!p1@ZNF808!0.37!7.32!ZNF808;;chr19:53758094..53758147,-!p1@ZNF677!0.37!7.32!ZNF677;;chr1:117602932..117602973,+!p1@TTF2!0.37!7.32!TTF2;;chr18:72922743..72922761,+!p3@TSHZ1!0.37!6.27!TSHZ1;;chr7:148892557..148892580,+!p4@ZNF282!0.37!5.23!ZNF282;;chr19:35225078..35225120,+!p2@ZNF181!0.37!4.18!ZNF181;;chr17:36873780..36873800,+!p5@MLLT6!0.37!2.09!MLLT6;;chr19:12551824..12551846,-!p2@ZNF443!0.37!2.09!ZNF443;;chr12:125052195..125052212,-!p11@NCOR2!0.37!2.09!NCOR2;;chr12:133613902..133613924,+!p4@ZNF84!0.37!2.09!ZNF84;;chr6:136599737..136599767,-!p2@BCLAF1!0.37!2.09!BCLAF1;;chr19:57078386..57078407,+!p3@ZNF470!0.37!2.09!ZNF470;;chr1:45805788..45805801,+!p6@TOE1!0.37!2.09!TOE1;;chr1:6640110..6640130,+!p2@ZBTB48!0.37!2.09!ZBTB48;;chr20:306221..306232,+!p4@SOX12!0.37!2.09!SOX12;;chr7:64467057..64467078,-!p1@ZNF117!0.36!38.68!ZNF117;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.36!29.27!LCOR;;chr6:7107939..7107993,+!p1@RREB1!0.36!24.04!RREB1;;chr2:217277169..217277266,+!p1@SMARCAL1!0.36!20.91!SMARCAL1;;chr12:53574464..53574539,+!p1@ZNF740!0.36!19.86!ZNF740;;chr17:40897043..40897087,-!p1@EZH1!0.36!17.77!EZH1;;chr22:21356378..21356422,-!p2@THAP7!0.36!17.77!THAP7;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.36!15.68!ZNF564;;chr16:1662351..1662442,+!p1@CRAMP1L!0.36!14.63!CRAMP1L;;chr3:40518599..40518664,+!p1@ZNF619!0.36!11.50!ZNF619;;chr4:140005341..140005411,-!p3@ELF2!0.36!10.45!ELF2;;chr1:249153268..249153298,-!p1@ZNF692!0.36!10.45!ZNF692;;chr19:58662139..58662182,-!p1@ZNF329!0.36!9.41!ZNF329;;chr6:134274295..134274308,+!p2@TBPL1!0.36!6.27!TBPL1;;chr19:54041382..54041437,+!p3@ZNF331!0.36!5.23!ZNF331;;chr10:38146510..38146576,-!p1@ZNF248!0.36!5.23!ZNF248;;chr19:8942909..8942953,-!p2@ZNF558!0.36!4.18!ZNF558;;chr7:129251614..129251630,+!p2@NRF1!0.36!4.18!NRF1;;chr4:76439649..76439662,+!p2@THAP6!0.36!4.18!THAP6;;chr5:142784101..142784130,-!p4@NR3C1!0.36!3.14!NR3C1;;chr1:158979680..158979683,+!p9@IFI16!0.36!2.09!IFI16;;chr1:27023383..27023416,+!p7@ARID1A!0.36!2.09!ARID1A;;chr19:37341260..37341284,+!p2@ZNF345!0.36!2.09!ZNF345;;chr7:127032741..127032777,-!p1@ZNF800!0.35!71.08!ZNF800;;chrX:153363125..153363182,-!p1@MECP2!0.35!54.36!MECP2;;chr18:47814032..47814079,-!p1@CXXC1!0.35!37.63!CXXC1;;chr19:8579030..8579061,-!p1@ZNF414!0.35!32.41!ZNF414;;chr19:37808778..37808827,+!p1@HKR1!0.35!21.95!HKR1;;chr16:2273558..2273637,+!p1@E4F1!0.35!18.82!E4F1;;chr6:35310312..35310359,+!p1@PPARD!0.35!17.77!PPARD;;chr19:40562072..40562143,-!p1@ZNF780B!0.35!17.77!ZNF780B;;chr19:58427951..58427984,-!p1@ZNF417!0.35!13.59!ZNF417;;chr13:27998831..27998851,+!p2@GTF3A!0.35!11.50!GTF3A;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.45!ZNF500;;chr19:12175535..12175554,+!p1@ZNF844!0.35!10.45!ZNF844;;chr17:16472486..16472533,-!p1@ZNF287!0.35!9.41!ZNF287;;chr2:174830564..174830605,-!p3@SP3!0.35!9.41!SP3;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.35!8.36!ZKSCAN4;;chr8:42698194..42698239,-!p2@THAP1!0.35!8.36!THAP1;;chr3:101395936..101395962,-!p2@ZBTB11!0.35!7.32!ZBTB11;;chr19:58111241..58111292,+!p1@ZNF530!0.35!6.27!ZNF530;;chrX:106959661..106959763,-!p4@TSC22D3!0.35!5.23!TSC22D3;;chr19:58071166..58071189,-!p2@ZNF550!0.35!4.18!ZNF550;;chr19:58951496..58951539,-!p1@ZNF132!0.35!4.18!ZNF132;;chr1:249153114..249153175,-!p3@ZNF692!0.35!3.14!ZNF692;;chr20:52210368..52210384,-!p1@ZNF217!0.35!3.14!ZNF217;;chr19:53324884..53324886,-!p1@ZNF28!0.35!2.09!ZNF28;;chr14:62213827..62213853,+!p6@HIF1A!0.35!2.09!HIF1A;;chr2:191878874..191878938,-!p1@STAT1!0.34!107.67!STAT1;;chr2:169312725..169312810,+!p1@CERS6!0.34!48.09!CERS6;;chr3:14989076..14989113,+!p1@NR2C2!0.34!40.77!NR2C2;;chr4:76439665..76439699,+!p1@THAP6!0.34!27.18!THAP6;;chr3:129158715..129158766,-!p2@MBD4!0.34!18.82!MBD4;;chr5:142784003..142784065,-!p2@NR3C1!0.34!15.68!NR3C1;;chr18:45456930..45456967,-!p2@SMAD2!0.34!10.45!SMAD2;;chr19:57922521..57922550,+!p1@ZNF17!0.34!7.32!ZNF17;;chr4:57775059..57775139,+!p2@REST!0.34!6.27!REST;;chrX:24167548..24167617,+!p2@ZFX!0.34!5.23!ZFX;;chr3:107241882..107241904,+!p2@BBX!0.34!4.18!BBX;;chr11:615570..615721,-!p2@IRF7!0.34!3.14!IRF7;;chr12:53614155..53614187,-!p3@RARG!0.34!3.14!RARG;;chr19:12405689..12405707,-!p3@ZNF44!0.34!3.14!ZNF44;;chr19:36909484..36909525,-!p2@ZFP82!0.34!3.14!ZFP82;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.ctss.bed.gz
|id=FF:11906-125F7
|id=FF:11906-125F7
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13512
|library_id_phase_based=2:CNhs13512
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11906
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11906
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|namespace=
|namespace=
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13512,LSID1025,release012,COMPLETED
|profile_hcage=CNhs13512,LSID1025,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 57: Line 78:
|rna_weight_ug=2.5186
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|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 77: Line 99:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=PDX1:2.76983119066;CDX1,2,4:2.45063693218;FOX{D1,D2}:2.43424202459;CREB1:2.36663663806;PAX3,7:2.36534311548;BPTF:2.02514076398;RUNX1..3:1.93018899916;ELF1,2,4:1.8845963436;RFX2..5_RFXANK_RFXAP:1.79682311583;ZBTB16:1.67538683272;HMX1:1.56699647459;LEF1_TCF7_TCF7L1,2:1.4993469272;ETS1,2:1.48308707497;TLX2:1.45524222209;FOXO1,3,4:1.43748513467;ATF5_CREB3:1.41564124926;DMAP1_NCOR{1,2}_SMARC:1.39535332567;ATF4:1.37441493425;IKZF2:1.34896854236;SPZ1:1.32133833743;FOX{F1,F2,J1}:1.23751201043;BREu{core}:1.2165495279;RFX1:1.16796615234;NKX6-1,2:1.16295152855;PBX1:1.14245457585;PAX6:1.11920492211;FOXN1:1.08161716315;AHR_ARNT_ARNT2:0.948594859614;PITX1..3:0.92589330193;SPI1:0.905037001171;RORA:0.859227965338;FOXP1:0.850052975304;ELK1,4_GABP{A,B1}:0.793578760013;ZEB1:0.793267417511;GATA6:0.782267636059;IRF1,2:0.740333047867;HIF1A:0.718360491024;JUN:0.708760624345;AIRE:0.680804535618;ATF2:0.676190331462;TGIF1:0.640135228854;NKX2-1,4:0.601657515813;SPIB:0.581798637835;YY1:0.565690542829;T:0.558465926805;HOX{A6,A7,B6,B7}:0.534318941021;PAX2:0.524780440775;SOX5:0.491194891238;SNAI1..3:0.486762089128;CRX:0.459128453076;NR5A1,2:0.385123632297;FOXD3:0.369053840929;CUX2:0.351773138976;ATF6:0.339383836995;TOPORS:0.328287944752;FOX{I1,J2}:0.313117313726;IRF7:0.300395828325;STAT1,3:0.284096900104;LMO2:0.268094144498;MYOD1:0.24419445992;NFIX:0.230030679269;POU1F1:0.214580306569;POU2F1..3:0.213847097084;SOX2:0.2078862489;NFE2L1:0.181230981192;NANOG:0.130404309989;PAX4:0.112938894864;NFIL3:0.109775925428;STAT5{A,B}:0.0582637954313;MAFB:0.0550203729799;VSX1,2:0.0346669697907;FOXA2:0.0128700998793;HBP1_HMGB_SSRP1_UBTF:0.00508231370969;EVI1:0.000779045542529;NRF1:-0.00566150081124;DBP:-0.0206430914301;NFKB1_REL_RELA:-0.0219271252322;SMAD1..7,9:-0.0773310055236;MYB:-0.0780571269038;TAL1_TCF{3,4,12}:-0.085093827802;ALX1:-0.0894148206276;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105593661082;HOXA9_MEIS1:-0.127721290995;EP300:-0.142391221217;NKX3-1:-0.16327243099;FOXQ1:-0.166772021989;POU6F1:-0.186079364325;SREBF1,2:-0.222335510474;HAND1,2:-0.227674446982;OCT4_SOX2{dimer}:-0.279700475108;HNF1A:-0.280399630153;NR6A1:-0.303270003689;FOXL1:-0.31484822803;PPARG:-0.360015754562;HNF4A_NR2F1,2:-0.377852586738;MYFfamily:-0.385176512278;GLI1..3:-0.428867219465;RREB1:-0.434409375058;PRRX1,2:-0.459236341253;HES1:-0.467391645549;NANOG{mouse}:-0.475438614843;NFATC1..3:-0.520216600663;ADNP_IRX_SIX_ZHX:-0.539845640539;ZNF143:-0.545108694322;GFI1B:-0.557150826436;TBX4,5:-0.585430850266;E2F1..5:-0.604321804689;MEF2{A,B,C,D}:-0.606161753251;NFY{A,B,C}:-0.607475120454;NHLH1,2:-0.610009590798;EGR1..3:-0.626824833865;AR:-0.633661116478;POU3F1..4:-0.636847295766;STAT2,4,6:-0.657744353514;CEBPA,B_DDIT3:-0.707117771582;FOSL2:-0.723287612922;HMGA1,2:-0.760148907526;RBPJ:-0.760434456615;MED-1{core}:-0.772771903356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.774277926537;FOS_FOS{B,L1}_JUN{B,D}:-0.779753465676;HLF:-0.793086848352;REST:-0.800607504973;NKX2-2,8:-0.811845649878;BACH2:-0.813108884315;ZNF384:-0.818640551395;PAX5:-0.857279186646;MZF1:-0.867339674129;RXRA_VDR{dimer}:-0.86819095641;GFI1:-0.898773899162;SOX{8,9,10}:-0.900961398372;ALX4:-0.903836353208;FOXP3:-0.934705150632;ZNF148:-0.935239492787;NKX2-3_NKX2-5:-0.93879959702;RXR{A,B,G}:-0.967814569823;FOXM1:-0.972130328903;NFE2:-0.989262641727;ZNF423:-1.00074555227;UFEwm:-1.00274236141;LHX3,4:-1.02265190817;ZFP161:-1.05760399668;GCM1,2:-1.09087092225;SRF:-1.11270835126;ZBTB6:-1.11289235434;HOX{A5,B5}:-1.11330811385;MTE{core}:-1.14316601717;ONECUT1,2:-1.15185224621;ZNF238:-1.15198940713;ARID5B:-1.15288688976;CDC5L:-1.15342182518;KLF4:-1.15582231787;SOX17:-1.1648264878;TP53:-1.18321771429;bHLH_family:-1.18894276992;GATA4:-1.19373790479;NR1H4:-1.19410011134;MTF1:-1.22807142914;TFAP4:-1.25085117234;GZF1:-1.26415579596;PRDM1:-1.32817673099;EN1,2:-1.3607079086;PATZ1:-1.37675020343;MYBL2:-1.38253450021;NR3C1:-1.41076600843;TFCP2:-1.46530374141;NFE2L2:-1.47678779628;XBP1:-1.48885557367;HIC1:-1.50494781819;HOX{A4,D4}:-1.51927630408;POU5F1:-1.53474597365;PAX8:-1.55740590447;ESR1:-1.59189366314;TEAD1:-1.59692714746;TEF:-1.60144125148;GTF2I:-1.61529430644;MAZ:-1.62762041486;EBF1:-1.64492101552;GTF2A1,2:-1.64987282384;XCPE1{core}:-1.67235933483;NKX3-2:-1.69348289463;TLX1..3_NFIC{dimer}:-1.71438104099;TFAP2B:-1.76128108733;ZIC1..3:-1.80909488298;ESRRA:-1.81368153932;TFDP1:-1.9199593927;PAX1,9:-1.95910249057;TBP:-1.97537542152;SP1:-2.02738623085;TFAP2{A,C}:-2.07571116447;HSF1,2:-2.64570675183;IKZF1:-2.75319095604
|top_motifs=PDX1:2.76983119066;CDX1,2,4:2.45063693218;FOX{D1,D2}:2.43424202459;CREB1:2.36663663806;PAX3,7:2.36534311548;BPTF:2.02514076398;RUNX1..3:1.93018899916;ELF1,2,4:1.8845963436;RFX2..5_RFXANK_RFXAP:1.79682311583;ZBTB16:1.67538683272;HMX1:1.56699647459;LEF1_TCF7_TCF7L1,2:1.4993469272;ETS1,2:1.48308707497;TLX2:1.45524222209;FOXO1,3,4:1.43748513467;ATF5_CREB3:1.41564124926;DMAP1_NCOR{1,2}_SMARC:1.39535332567;ATF4:1.37441493425;IKZF2:1.34896854236;SPZ1:1.32133833743;FOX{F1,F2,J1}:1.23751201043;BREu{core}:1.2165495279;RFX1:1.16796615234;NKX6-1,2:1.16295152855;PBX1:1.14245457585;PAX6:1.11920492211;FOXN1:1.08161716315;AHR_ARNT_ARNT2:0.948594859614;PITX1..3:0.92589330193;SPI1:0.905037001171;RORA:0.859227965338;FOXP1:0.850052975304;ELK1,4_GABP{A,B1}:0.793578760013;ZEB1:0.793267417511;GATA6:0.782267636059;IRF1,2:0.740333047867;HIF1A:0.718360491024;JUN:0.708760624345;AIRE:0.680804535618;ATF2:0.676190331462;TGIF1:0.640135228854;NKX2-1,4:0.601657515813;SPIB:0.581798637835;YY1:0.565690542829;T:0.558465926805;HOX{A6,A7,B6,B7}:0.534318941021;PAX2:0.524780440775;SOX5:0.491194891238;SNAI1..3:0.486762089128;CRX:0.459128453076;NR5A1,2:0.385123632297;FOXD3:0.369053840929;CUX2:0.351773138976;ATF6:0.339383836995;TOPORS:0.328287944752;FOX{I1,J2}:0.313117313726;IRF7:0.300395828325;STAT1,3:0.284096900104;LMO2:0.268094144498;MYOD1:0.24419445992;NFIX:0.230030679269;POU1F1:0.214580306569;POU2F1..3:0.213847097084;SOX2:0.2078862489;NFE2L1:0.181230981192;NANOG:0.130404309989;PAX4:0.112938894864;NFIL3:0.109775925428;STAT5{A,B}:0.0582637954313;MAFB:0.0550203729799;VSX1,2:0.0346669697907;FOXA2:0.0128700998793;HBP1_HMGB_SSRP1_UBTF:0.00508231370969;EVI1:0.000779045542529;NRF1:-0.00566150081124;DBP:-0.0206430914301;NFKB1_REL_RELA:-0.0219271252322;SMAD1..7,9:-0.0773310055236;MYB:-0.0780571269038;TAL1_TCF{3,4,12}:-0.085093827802;ALX1:-0.0894148206276;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105593661082;HOXA9_MEIS1:-0.127721290995;EP300:-0.142391221217;NKX3-1:-0.16327243099;FOXQ1:-0.166772021989;POU6F1:-0.186079364325;SREBF1,2:-0.222335510474;HAND1,2:-0.227674446982;OCT4_SOX2{dimer}:-0.279700475108;HNF1A:-0.280399630153;NR6A1:-0.303270003689;FOXL1:-0.31484822803;PPARG:-0.360015754562;HNF4A_NR2F1,2:-0.377852586738;MYFfamily:-0.385176512278;GLI1..3:-0.428867219465;RREB1:-0.434409375058;PRRX1,2:-0.459236341253;HES1:-0.467391645549;NANOG{mouse}:-0.475438614843;NFATC1..3:-0.520216600663;ADNP_IRX_SIX_ZHX:-0.539845640539;ZNF143:-0.545108694322;GFI1B:-0.557150826436;TBX4,5:-0.585430850266;E2F1..5:-0.604321804689;MEF2{A,B,C,D}:-0.606161753251;NFY{A,B,C}:-0.607475120454;NHLH1,2:-0.610009590798;EGR1..3:-0.626824833865;AR:-0.633661116478;POU3F1..4:-0.636847295766;STAT2,4,6:-0.657744353514;CEBPA,B_DDIT3:-0.707117771582;FOSL2:-0.723287612922;HMGA1,2:-0.760148907526;RBPJ:-0.760434456615;MED-1{core}:-0.772771903356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.774277926537;FOS_FOS{B,L1}_JUN{B,D}:-0.779753465676;HLF:-0.793086848352;REST:-0.800607504973;NKX2-2,8:-0.811845649878;BACH2:-0.813108884315;ZNF384:-0.818640551395;PAX5:-0.857279186646;MZF1:-0.867339674129;RXRA_VDR{dimer}:-0.86819095641;GFI1:-0.898773899162;SOX{8,9,10}:-0.900961398372;ALX4:-0.903836353208;FOXP3:-0.934705150632;ZNF148:-0.935239492787;NKX2-3_NKX2-5:-0.93879959702;RXR{A,B,G}:-0.967814569823;FOXM1:-0.972130328903;NFE2:-0.989262641727;ZNF423:-1.00074555227;UFEwm:-1.00274236141;LHX3,4:-1.02265190817;ZFP161:-1.05760399668;GCM1,2:-1.09087092225;SRF:-1.11270835126;ZBTB6:-1.11289235434;HOX{A5,B5}:-1.11330811385;MTE{core}:-1.14316601717;ONECUT1,2:-1.15185224621;ZNF238:-1.15198940713;ARID5B:-1.15288688976;CDC5L:-1.15342182518;KLF4:-1.15582231787;SOX17:-1.1648264878;TP53:-1.18321771429;bHLH_family:-1.18894276992;GATA4:-1.19373790479;NR1H4:-1.19410011134;MTF1:-1.22807142914;TFAP4:-1.25085117234;GZF1:-1.26415579596;PRDM1:-1.32817673099;EN1,2:-1.3607079086;PATZ1:-1.37675020343;MYBL2:-1.38253450021;NR3C1:-1.41076600843;TFCP2:-1.46530374141;NFE2L2:-1.47678779628;XBP1:-1.48885557367;HIC1:-1.50494781819;HOX{A4,D4}:-1.51927630408;POU5F1:-1.53474597365;PAX8:-1.55740590447;ESR1:-1.59189366314;TEAD1:-1.59692714746;TEF:-1.60144125148;GTF2I:-1.61529430644;MAZ:-1.62762041486;EBF1:-1.64492101552;GTF2A1,2:-1.64987282384;XCPE1{core}:-1.67235933483;NKX3-2:-1.69348289463;TLX1..3_NFIC{dimer}:-1.71438104099;TFAP2B:-1.76128108733;ZIC1..3:-1.80909488298;ESRRA:-1.81368153932;TFDP1:-1.9199593927;PAX1,9:-1.95910249057;TBP:-1.97537542152;SP1:-2.02738623085;TFAP2{A,C}:-2.07571116447;HSF1,2:-2.64570675183;IKZF1:-2.75319095604
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11906-125F7;search_select_hide=table117:FF:11906-125F7
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25-CD45RA+ naive conventional T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13512
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number33-34
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005907
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13512 CAGE DRX008192 DRR009064
Accession ID Hg19

Library idBAMCTSS
CNhs13512 DRZ000489 DRZ001874
Accession ID Hg38

Library idBAMCTSS
CNhs13512 DRZ011839 DRZ013224
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.203
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.338
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.311
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.136
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.635
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.422
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.92
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.00212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.49
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.566
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.617
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.578
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.574
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0845
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.862
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.786
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.714
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.663
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.483
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.714
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.977
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Jaspar motifP-value
MA0002.22.2638e-4
MA0003.10.521
MA0004.10.847
MA0006.10.111
MA0007.10.735
MA0009.10.255
MA0014.10.854
MA0017.10.504
MA0018.21.67183e-4
MA0019.10.509
MA0024.10.3
MA0025.10.931
MA0027.10.652
MA0028.10.00268
MA0029.10.478
MA0030.10.176
MA0031.10.00361
MA0035.20.355
MA0038.10.0263
MA0039.20.448
MA0040.10.206
MA0041.10.24
MA0042.10.728
MA0043.10.343
MA0046.10.291
MA0047.20.242
MA0048.10.825
MA0050.10.00176
MA0051.10.111
MA0052.10.0326
MA0055.10.953
MA0057.10.673
MA0058.10.936
MA0059.10.424
MA0060.10.0353
MA0061.10.2
MA0062.23.10349e-11
MA0065.20.149
MA0066.10.666
MA0067.10.275
MA0068.10.31
MA0069.10.787
MA0070.10.397
MA0071.10.975
MA0072.10.984
MA0073.10.989
MA0074.10.507
MA0076.14.94123e-5
MA0077.10.0446
MA0078.10.88
MA0079.20.318
MA0080.23.11381e-9
MA0081.10.0971
MA0083.10.0134
MA0084.10.572
MA0087.10.415
MA0088.10.309
MA0090.10.0037
MA0091.10.984
MA0092.10.819
MA0093.10.951
MA0099.29.01207e-8
MA0100.10.664
MA0101.10.521
MA0102.20.41
MA0103.10.0648
MA0104.20.0842
MA0105.12.91278e-4
MA0106.10.117
MA0107.10.185
MA0108.22.42186e-12
MA0111.10.125
MA0112.20.316
MA0113.10.874
MA0114.10.766
MA0115.10.907
MA0116.10.00108
MA0117.10.374
MA0119.10.66
MA0122.10.797
MA0124.10.0958
MA0125.10.0615
MA0131.10.145
MA0135.10.0221
MA0136.14.45693e-17
MA0137.20.205
MA0138.20.926
MA0139.10.0526
MA0140.10.39
MA0141.10.743
MA0142.10.173
MA0143.10.295
MA0144.10.549
MA0145.10.156
MA0146.10.395
MA0147.10.0706
MA0148.10.329
MA0149.10.124
MA0150.10.0678
MA0152.18.90041e-4
MA0153.10.458
MA0154.10.114
MA0155.10.496
MA0156.12.25458e-14
MA0157.10.00228
MA0159.10.283
MA0160.10.884
MA0162.10.64
MA0163.16.69817e-8
MA0164.10.845
MA0258.10.223
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Novel motifP-value
10.19
100.00785
1000.47
1010.12
1020.702
1030.31
1040.736
1050.701
1060.591
1070.0635
1080.975
1090.164
110.148
1100.743
1110.316
1120.612
1130.181
1140.189
1150.227
1160.794
1170.00114
1180.248
1190.637
120.779
1200.733
1210.829
1220.734
1237.48709e-6
1240.524
1250.769
1260.96
1270.85
1280.919
1290.421
130.48
1300.315
1310.236
1320.951
1330.446
1340.572
1350.789
1360.663
1370.0475
1380.291
1390.0268
140.512
1400.0262
1410.433
1420.397
1430.0152
1440.737
1450.605
1460.436
1470.0568
1480.087
1490.708
150.185
1500.76
1510.439
1520.169
1530.708
1540.336
1550.0415
1560.992
1570.887
1580.00356
1590.872
160.594
1600.828
1610.387
1620.314
1630.61
1640.0404
1650.789
1660.75
1670.0473
1680.92
1690.835
170.826
180.931
190.204
20.545
200.488
210.341
220.576
230.533
240.596
250.124
260.45
270.349
280.69
290.0248
30.13
300.0962
310.777
320.111
330.269
340.423
350.0323
360.0211
370.306
380.919
390.229
40.776
400.71
410.229
420.113
430.289
440.72
450.38
460.255
470.0919
480.267
490.0404
50.452
500.483
510.691
520.443
530.4
540.931
550.222
560.722
570.389
580.117
590.773
60.838
600.517
610.0796
620.0646
630.703
640.318
650.982
660.594
670.857
680.541
690.977
70.378
700.00934
710.0482
720.183
730.855
740.41
750.00547
760.113
770.0807
780.372
790.821
80.722
800.0447
810.174
820.191
830.651
840.557
850.688
860.228
870.479
880.891
890.241
90.788
900.00721
910.384
920.393
930.468
940.152
950.422
960.349
970.443
980.0611
990.00278



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13512


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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