FF:11906-125F7: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13512
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	33-34
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005907

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13512		CAGE		DRX008192		DRR009064

Accession ID Hg19

Library id		BAM		CTSS
CNhs13512		DRZ000489		DRZ001874

Accession ID Hg38

Library id		BAM		CTSS
CNhs13512		DRZ011839		DRZ013224

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.203
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.338
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.311
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.136
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.635
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.422
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.92
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.00212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.49
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.566
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.617
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.578
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.574
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0845
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.862
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.786
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.714
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.663
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.483
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.714
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.977
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13512

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.2638e-4
MA0003.1	MA0003.1	0.521
MA0004.1	MA0004.1	0.847
MA0006.1	MA0006.1	0.111
MA0007.1	MA0007.1	0.735
MA0009.1	MA0009.1	0.255
MA0014.1	MA0014.1	0.854
MA0017.1	MA0017.1	0.504
MA0018.2	MA0018.2	1.67183e-4
MA0019.1	MA0019.1	0.509
MA0024.1	MA0024.1	0.3
MA0025.1	MA0025.1	0.931
MA0027.1	MA0027.1	0.652
MA0028.1	MA0028.1	0.00268
MA0029.1	MA0029.1	0.478
MA0030.1	MA0030.1	0.176
MA0031.1	MA0031.1	0.00361
MA0035.2	MA0035.2	0.355
MA0038.1	MA0038.1	0.0263
MA0039.2	MA0039.2	0.448
MA0040.1	MA0040.1	0.206
MA0041.1	MA0041.1	0.24
MA0042.1	MA0042.1	0.728
MA0043.1	MA0043.1	0.343
MA0046.1	MA0046.1	0.291
MA0047.2	MA0047.2	0.242
MA0048.1	MA0048.1	0.825
MA0050.1	MA0050.1	0.00176
MA0051.1	MA0051.1	0.111
MA0052.1	MA0052.1	0.0326
MA0055.1	MA0055.1	0.953
MA0057.1	MA0057.1	0.673
MA0058.1	MA0058.1	0.936
MA0059.1	MA0059.1	0.424
MA0060.1	MA0060.1	0.0353
MA0061.1	MA0061.1	0.2
MA0062.2	MA0062.2	3.10349e-11
MA0065.2	MA0065.2	0.149
MA0066.1	MA0066.1	0.666
MA0067.1	MA0067.1	0.275
MA0068.1	MA0068.1	0.31
MA0069.1	MA0069.1	0.787
MA0070.1	MA0070.1	0.397
MA0071.1	MA0071.1	0.975
MA0072.1	MA0072.1	0.984
MA0073.1	MA0073.1	0.989
MA0074.1	MA0074.1	0.507
MA0076.1	MA0076.1	4.94123e-5
MA0077.1	MA0077.1	0.0446
MA0078.1	MA0078.1	0.88
MA0079.2	MA0079.2	0.318
MA0080.2	MA0080.2	3.11381e-9
MA0081.1	MA0081.1	0.0971
MA0083.1	MA0083.1	0.0134
MA0084.1	MA0084.1	0.572
MA0087.1	MA0087.1	0.415
MA0088.1	MA0088.1	0.309
MA0090.1	MA0090.1	0.0037
MA0091.1	MA0091.1	0.984
MA0092.1	MA0092.1	0.819
MA0093.1	MA0093.1	0.951
MA0099.2	MA0099.2	9.01207e-8
MA0100.1	MA0100.1	0.664
MA0101.1	MA0101.1	0.521
MA0102.2	MA0102.2	0.41
MA0103.1	MA0103.1	0.0648
MA0104.2	MA0104.2	0.0842
MA0105.1	MA0105.1	2.91278e-4
MA0106.1	MA0106.1	0.117
MA0107.1	MA0107.1	0.185
MA0108.2	MA0108.2	2.42186e-12
MA0111.1	MA0111.1	0.125
MA0112.2	MA0112.2	0.316
MA0113.1	MA0113.1	0.874
MA0114.1	MA0114.1	0.766
MA0115.1	MA0115.1	0.907
MA0116.1	MA0116.1	0.00108
MA0117.1	MA0117.1	0.374
MA0119.1	MA0119.1	0.66
MA0122.1	MA0122.1	0.797
MA0124.1	MA0124.1	0.0958
MA0125.1	MA0125.1	0.0615
MA0131.1	MA0131.1	0.145
MA0135.1	MA0135.1	0.0221
MA0136.1	MA0136.1	4.45693e-17
MA0137.2	MA0137.2	0.205
MA0138.2	MA0138.2	0.926
MA0139.1	MA0139.1	0.0526
MA0140.1	MA0140.1	0.39
MA0141.1	MA0141.1	0.743
MA0142.1	MA0142.1	0.173
MA0143.1	MA0143.1	0.295
MA0144.1	MA0144.1	0.549
MA0145.1	MA0145.1	0.156
MA0146.1	MA0146.1	0.395
MA0147.1	MA0147.1	0.0706
MA0148.1	MA0148.1	0.329
MA0149.1	MA0149.1	0.124
MA0150.1	MA0150.1	0.0678
MA0152.1	MA0152.1	8.90041e-4
MA0153.1	MA0153.1	0.458
MA0154.1	MA0154.1	0.114
MA0155.1	MA0155.1	0.496
MA0156.1	MA0156.1	2.25458e-14
MA0157.1	MA0157.1	0.00228
MA0159.1	MA0159.1	0.283
MA0160.1	MA0160.1	0.884
MA0162.1	MA0162.1	0.64
MA0163.1	MA0163.1	6.69817e-8
MA0164.1	MA0164.1	0.845
MA0258.1	MA0258.1	0.223
MA0259.1	MA0259.1	0.129

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13512

Novel motif	Logo	P-value
1	1	0.19
10	10	0.00785
100	100	0.47
101	101	0.12
102	102	0.702
103	103	0.31
104	104	0.736
105	105	0.701
106	106	0.591
107	107	0.0635
108	108	0.975
109	109	0.164
11	11	0.148
110	110	0.743
111	111	0.316
112	112	0.612
113	113	0.181
114	114	0.189
115	115	0.227
116	116	0.794
117	117	0.00114
118	118	0.248
119	119	0.637
12	12	0.779
120	120	0.733
121	121	0.829
122	122	0.734
123	123	7.48709e-6
124	124	0.524
125	125	0.769
126	126	0.96
127	127	0.85
128	128	0.919
129	129	0.421
13	13	0.48
130	130	0.315
131	131	0.236
132	132	0.951
133	133	0.446
134	134	0.572
135	135	0.789
136	136	0.663
137	137	0.0475
138	138	0.291
139	139	0.0268
14	14	0.512
140	140	0.0262
141	141	0.433
142	142	0.397
143	143	0.0152
144	144	0.737
145	145	0.605
146	146	0.436
147	147	0.0568
148	148	0.087
149	149	0.708
15	15	0.185
150	150	0.76
151	151	0.439
152	152	0.169
153	153	0.708
154	154	0.336
155	155	0.0415
156	156	0.992
157	157	0.887
158	158	0.00356
159	159	0.872
16	16	0.594
160	160	0.828
161	161	0.387
162	162	0.314
163	163	0.61
164	164	0.0404
165	165	0.789
166	166	0.75
167	167	0.0473
168	168	0.92
169	169	0.835
17	17	0.826
18	18	0.931
19	19	0.204
2	2	0.545
20	20	0.488
21	21	0.341
22	22	0.576
23	23	0.533
24	24	0.596
25	25	0.124
26	26	0.45
27	27	0.349
28	28	0.69
29	29	0.0248
3	3	0.13
30	30	0.0962
31	31	0.777
32	32	0.111
33	33	0.269
34	34	0.423
35	35	0.0323
36	36	0.0211
37	37	0.306
38	38	0.919
39	39	0.229
4	4	0.776
40	40	0.71
41	41	0.229
42	42	0.113
43	43	0.289
44	44	0.72
45	45	0.38
46	46	0.255
47	47	0.0919
48	48	0.267
49	49	0.0404
5	5	0.452
50	50	0.483
51	51	0.691
52	52	0.443
53	53	0.4
54	54	0.931
55	55	0.222
56	56	0.722
57	57	0.389
58	58	0.117
59	59	0.773
6	6	0.838
60	60	0.517
61	61	0.0796
62	62	0.0646
63	63	0.703
64	64	0.318
65	65	0.982
66	66	0.594
67	67	0.857
68	68	0.541
69	69	0.977
7	7	0.378
70	70	0.00934
71	71	0.0482
72	72	0.183
73	73	0.855
74	74	0.41
75	75	0.00547
76	76	0.113
77	77	0.0807
78	78	0.372
79	79	0.821
8	8	0.722
80	80	0.0447
81	81	0.174
82	82	0.191
83	83	0.651
84	84	0.557
85	85	0.688
86	86	0.228
87	87	0.479
88	88	0.891
89	89	0.241
9	9	0.788
90	90	0.00721
91	91	0.384
92	92	0.393
93	93	0.468
94	94	0.152
95	95	0.422
96	96	0.349
97	97	0.443
98	98	0.0611
99	99	0.00278

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13512

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008085
+|DRA_sample_Accession=CAGE@SAMD00005907
-|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874
+|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874;DRZ011839;DRZ013224
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.36!229.98!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.32!208.03!LEF1;;chr3:63953435..63953499,+!p1@ATXN7!2.05!111.85!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.99!422.32!TCF7;;chr6:91006518..91006570,-!p1@BACH2!1.97!203.84!BACH2;;chr7:50343634..50343717,+!p2@IKZF1!1.91!80.49!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.88!102.44!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.77!58.54!FOXP1;;chr5:133451347..133451358,+!p3@TCF7!1.75!55.40!TCF7;;chr4:109090075..109090095,-!p2@LEF1!1.74!54.36!LEF1;;chr3:18486354..18486377,-!p2@SATB1!1.73!65.86!SATB1;;chr19:54058073..54058088,+!p1@ZNF331!1.68!47.04!ZNF331;;chr2:192015701..192015743,-!p1@STAT4!1.67!61.68!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.63!41.81!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.62!1232.47!KLF2;;chr6:91006575..91006602,-!p2@BACH2!1.61!57.49!BACH2;;chr2:192015750..192015793,-!p2@STAT4!1.61!52.27!STAT4;;chr7:50343895..50343936,+!p5@IKZF1!1.61!39.72!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.60!973.23!TSC22D3;;chr2:231090433..231090469,+!p1@SP140!1.58!36.59!SP140;;chr19:54041669..54041697,+!p2@ZNF331!1.55!34.50!ZNF331;;chr14:99738138..99738163,-!p1@BCL11B!1.54!33.45!BCL11B;;chr2:97202991..97203043,+!p3@ARID5A!1.52!32.41!ARID5A;;chr9:3525727..3525828,-!p2@RFX3!1.51!77.36!RFX3;;chr7:50344251..50344288,+!p3@IKZF1!1.47!28.22!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.47!28.22!IKZF1;;chr19:45971246..45971265,+!p1@FOSB!1.45!487.14!FOSB;;chr10:8096631..8096660,+!p1@GATA3!1.45!32.41!GATA3;;chr17:38497662..38497713,+!p4@RARA!1.45!31.36!RARA;;chr7:50344289..50344323,+!p1@IKZF1!1.45!27.18!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.99!AKNA;;chrX:101186981..101187030,-!p1@ZMAT1!1.38!73.17!ZMAT1;;chr4:109089901..109089930,-!p3@LEF1!1.38!23.00!LEF1;;chr8:123793988..123794016,+!p1@ZHX2!1.35!37.63!ZHX2;;chr14:64970670..64970712,-!p3@ZBTB25!1.34!44.95!ZBTB25;;chr21:36421535..36421610,-!p2@RUNX1!1.32!68.99!RUNX1;;chr6:91006503..91006517,-!p3@BACH2!1.30!18.82!BACH2;;chr3:18487057..18487105,-!p4@SATB1!1.30!18.82!SATB1;;chr4:109089573..109089585,-!p8@LEF1!1.30!18.82!LEF1;;chr11:128392273..128392308,-!p2@ETS1!1.29!77.36!ETS1;;chr19:19779619..19779670,+!p1@ZNF101!1.28!50.18!ZNF101;;chr2:157189180..157189290,-!p1@NR4A2!1.27!89.90!NR4A2;;chr10:8096772..8096787,+!p2@GATA3!1.27!20.91!GATA3;;chr3:71542684..71542720,-!p18@FOXP1!1.27!17.77!FOXP1;;chr2:100759037..100759058,-!p2@AFF3!1.25!16.73!AFF3;;chr3:18480217..18480239,-!p3@SATB1!1.25!16.73!SATB1;;chr4:109086281..109086319,-!p9@LEF1!1.25!16.73!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!1.24!24.04!NFATC2;;chr4:38665769..38665801,+!p2@KLF3!1.22!139.03!KLF3;;chr19:12444440..12444455,-!p1@ZNF563!1.22!27.18!ZNF563;;chr3:71542651..71542683,-!p22@FOXP1!1.22!15.68!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.22!15.68!NR3C2;;chr19:54041645..54041661,+!p5@ZNF331!1.22!15.68!ZNF331;;chr6:391743..391759,+!p1@IRF4!1.22!15.68!IRF4;;chr13:41240717..41240735,-!p2@FOXO1!1.21!101.40!FOXO1;;chr1:25256756..25256774,-!p1@RUNX3!1.21!28.22!RUNX3;;chr10:35416142..35416169,+!p3@CREM!1.20!38.68!CREM;;chr19:45972701..45972774,+!p2@FOSB!1.19!19.86!FOSB;;chr4:109088089..109088101,-!p11@LEF1!1.19!14.63!LEF1;;chr19:38085768..38085821,+!p1@ZNF540!1.18!20.91!ZNF540;;chr14:75745523..75745537,+!p1@FOS!1.17!1641.21!FOS;;chr11:128392085..128392232,-!p1@ETS1!1.16!444.28!ETS1;;chr10:35484053..35484076,+!p1@CREM!1.16!33.45!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.14!81.54!ELF1;;chr10:135121763..135121783,+!p5@ZNF511!1.13!12.54!ZNF511;;chr2:100759010..100759035,-!p1@AFF3!1.13!12.54!AFF3;;chr4:109090054..109090073,-!p7@LEF1!1.13!12.54!LEF1;;chr19:54041603..54041615,+!p10@ZNF331!1.13!12.54!ZNF331;;chr19:12902289..12902307,+!p1@JUNB!1.12!2781.69!JUNB;;chr16:3313791..3313834,+!p2@ZNF263!1.11!26.13!ZNF263;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.10!64.81!ZNF10;;chr17:38020516..38020544,-!p5@IKZF3!1.10!11.50!IKZF3;;chr2:157189617..157189667,-!p4@NR4A2!1.10!11.50!NR4A2;;chr3:18480173..18480189,-!p6@SATB1!1.10!11.50!SATB1;;chr4:109088940..109089037,-!p4@LEF1!1.10!11.50!LEF1;;chr16:89787937..89787971,+!p1@ZNF276!1.09!29.27!ZNF276;;chr19:16435523..16435619,+!p2@KLF2!1.09!15.68!KLF2;;chr3:18466787..18466839,-!p1@SATB1!1.08!50.18!SATB1;;chr2:97202480..97202499,+!p1@ARID5A!1.07!109.76!ARID5A;;chr8:81397846..81397860,+!p3@ZBTB10!1.07!13.59!ZBTB10;;chr16:68119324..68119364,+!p1@NFATC3!1.06!47.04!NFATC3;;chr3:71353892..71353928,-!p31@FOXP1!1.06!10.45!FOXP1;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.45!ZBP1;;chrY:21906623..21906637,-!p3@KDM5D!1.06!10.45!KDM5D;;chr13:74707894..74707947,-!p6@KLF12!1.05!11.50!KLF12;;chr13:74708246..74708264,-!p8@KLF12!1.05!11.50!KLF12;;chr11:67007548..67007610,+!p3@KDM2A!1.04!74.22!KDM2A;;chr14:64971288..64971316,-!p2@ZBTB25!1.03!30.32!ZBTB25;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.54!TSHZ2;;chr14:99738059..99738086,-!p2@BCL11B!1.02!9.41!BCL11B;;chr7:50343800..50343811,+!p8@IKZF1!1.02!9.41!IKZF1;;chr10:135121488..135121501,+!p8@ZNF511!1.02!9.41!ZNF511;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r19:14800849..14800917,+!p1@ZNF333!0.38!13.59!ZNF333;;chr7:99156434..99156510,+!p2@ZNF655!0.38!12.54!ZNF655;;chr19:35264089..35264146,-!p1@ZNF599!0.38!10.45!ZNF599;;chr19:56915668..56915732,+!p1@ZNF583!0.38!7.32!ZNF583;;chr3:150126136..150126158,+!p4@TSC22D2!0.38!7.32!TSC22D2;;chr17:42298339..42298361,-!p5@UBTF!0.38!4.18!UBTF;;chr19:52408227..52408243,-!p2@ZNF649!0.38!4.18!ZNF649;;chr12:53848505..53848532,+!p4@PCBP2!0.38!4.18!PCBP2;;chr14:74386613..74386616,+!p7@ZNF410!0.38!2.09!ZNF410;;chr3:23986762..23986821,+!p1@NR1D2!0.37!32.41!NR1D2;;chr3:101395963..101395993,-!p1@ZBTB11!0.37!31.36!ZBTB11;;chr19:58609577..58609628,-!p1@ZSCAN18!0.37!26.13!ZSCAN18;;chr4:106068026..106068084,+!p1@TET2!0.37!18.82!TET2;;chr5:178286925..178287007,+!p1@ZNF354B!0.37!11.50!ZNF354B;;chr19:53030906..53030952,+!p1@ZNF808!0.37!7.32!ZNF808;;chr19:53758094..53758147,-!p1@ZNF677!0.37!7.32!ZNF677;;chr1:117602932..117602973,+!p1@TTF2!0.37!7.32!TTF2;;chr18:72922743..72922761,+!p3@TSHZ1!0.37!6.27!TSHZ1;;chr7:148892557..148892580,+!p4@ZNF282!0.37!5.23!ZNF282;;chr19:35225078..35225120,+!p2@ZNF181!0.37!4.18!ZNF181;;chr17:36873780..36873800,+!p5@MLLT6!0.37!2.09!MLLT6;;chr19:12551824..12551846,-!p2@ZNF443!0.37!2.09!ZNF443;;chr12:125052195..125052212,-!p11@NCOR2!0.37!2.09!NCOR2;;chr12:133613902..133613924,+!p4@ZNF84!0.37!2.09!ZNF84;;chr6:136599737..136599767,-!p2@BCLAF1!0.37!2.09!BCLAF1;;chr19:57078386..57078407,+!p3@ZNF470!0.37!2.09!ZNF470;;chr1:45805788..45805801,+!p6@TOE1!0.37!2.09!TOE1;;chr1:6640110..6640130,+!p2@ZBTB48!0.37!2.09!ZBTB48;;chr20:306221..306232,+!p4@SOX12!0.37!2.09!SOX12;;chr7:64467057..64467078,-!p1@ZNF117!0.36!38.68!ZNF117;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.36!29.27!LCOR;;chr6:7107939..7107993,+!p1@RREB1!0.36!24.04!RREB1;;chr2:217277169..217277266,+!p1@SMARCAL1!0.36!20.91!SMARCAL1;;chr12:53574464..53574539,+!p1@ZNF740!0.36!19.86!ZNF740;;chr17:40897043..40897087,-!p1@EZH1!0.36!17.77!EZH1;;chr22:21356378..21356422,-!p2@THAP7!0.36!17.77!THAP7;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.36!15.68!ZNF564;;chr16:1662351..1662442,+!p1@CRAMP1L!0.36!14.63!CRAMP1L;;chr3:40518599..40518664,+!p1@ZNF619!0.36!11.50!ZNF619;;chr4:140005341..140005411,-!p3@ELF2!0.36!10.45!ELF2;;chr1:249153268..249153298,-!p1@ZNF692!0.36!10.45!ZNF692;;chr19:58662139..58662182,-!p1@ZNF329!0.36!9.41!ZNF329;;chr6:134274295..134274308,+!p2@TBPL1!0.36!6.27!TBPL1;;chr19:54041382..54041437,+!p3@ZNF331!0.36!5.23!ZNF331;;chr10:38146510..38146576,-!p1@ZNF248!0.36!5.23!ZNF248;;chr19:8942909..8942953,-!p2@ZNF558!0.36!4.18!ZNF558;;chr7:129251614..129251630,+!p2@NRF1!0.36!4.18!NRF1;;chr4:76439649..76439662,+!p2@THAP6!0.36!4.18!THAP6;;chr5:142784101..142784130,-!p4@NR3C1!0.36!3.14!NR3C1;;chr1:158979680..158979683,+!p9@IFI16!0.36!2.09!IFI16;;chr1:27023383..27023416,+!p7@ARID1A!0.36!2.09!ARID1A;;chr19:37341260..37341284,+!p2@ZNF345!0.36!2.09!ZNF345;;chr7:127032741..127032777,-!p1@ZNF800!0.35!71.08!ZNF800;;chrX:153363125..153363182,-!p1@MECP2!0.35!54.36!MECP2;;chr18:47814032..47814079,-!p1@CXXC1!0.35!37.63!CXXC1;;chr19:8579030..8579061,-!p1@ZNF414!0.35!32.41!ZNF414;;chr19:37808778..37808827,+!p1@HKR1!0.35!21.95!HKR1;;chr16:2273558..2273637,+!p1@E4F1!0.35!18.82!E4F1;;chr6:35310312..35310359,+!p1@PPARD!0.35!17.77!PPARD;;chr19:40562072..40562143,-!p1@ZNF780B!0.35!17.77!ZNF780B;;chr19:58427951..58427984,-!p1@ZNF417!0.35!13.59!ZNF417;;chr13:27998831..27998851,+!p2@GTF3A!0.35!11.50!GTF3A;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.45!ZNF500;;chr19:12175535..12175554,+!p1@ZNF844!0.35!10.45!ZNF844;;chr17:16472486..16472533,-!p1@ZNF287!0.35!9.41!ZNF287;;chr2:174830564..174830605,-!p3@SP3!0.35!9.41!SP3;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.35!8.36!ZKSCAN4;;chr8:42698194..42698239,-!p2@THAP1!0.35!8.36!THAP1;;chr3:101395936..101395962,-!p2@ZBTB11!0.35!7.32!ZBTB11;;chr19:58111241..58111292,+!p1@ZNF530!0.35!6.27!ZNF530;;chrX:106959661..106959763,-!p4@TSC22D3!0.35!5.23!TSC22D3;;chr19:58071166..58071189,-!p2@ZNF550!0.35!4.18!ZNF550;;chr19:58951496..58951539,-!p1@ZNF132!0.35!4.18!ZNF132;;chr1:249153114..249153175,-!p3@ZNF692!0.35!3.14!ZNF692;;chr20:52210368..52210384,-!p1@ZNF217!0.35!3.14!ZNF217;;chr19:53324884..53324886,-!p1@ZNF28!0.35!2.09!ZNF28;;chr14:62213827..62213853,+!p6@HIF1A!0.35!2.09!HIF1A;;chr2:191878874..191878938,-!p1@STAT1!0.34!107.67!STAT1;;chr2:169312725..169312810,+!p1@CERS6!0.34!48.09!CERS6;;chr3:14989076..14989113,+!p1@NR2C2!0.34!40.77!NR2C2;;chr4:76439665..76439699,+!p1@THAP6!0.34!27.18!THAP6;;chr3:129158715..129158766,-!p2@MBD4!0.34!18.82!MBD4;;chr5:142784003..142784065,-!p2@NR3C1!0.34!15.68!NR3C1;;chr18:45456930..45456967,-!p2@SMAD2!0.34!10.45!SMAD2;;chr19:57922521..57922550,+!p1@ZNF17!0.34!7.32!ZNF17;;chr4:57775059..57775139,+!p2@REST!0.34!6.27!REST;;chrX:24167548..24167617,+!p2@ZFX!0.34!5.23!ZFX;;chr3:107241882..107241904,+!p2@BBX!0.34!4.18!BBX;;chr11:615570..615721,-!p2@IRF7!0.34!3.14!IRF7;;chr12:53614155..53614187,-!p3@RARG!0.34!3.14!RARG;;chr19:12405689..12405707,-!p3@ZNF44!0.34!3.14!ZNF44;;chr19:36909484..36909525,-!p2@ZFP82!0.34!3.14!ZFP82;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11906-125F7
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13512
-|library_id_phase_based=1:CNhs13512
+|library_id_phase_based=2:CNhs13512
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11906
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11906
 |name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
 |namespace=
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13512,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11906-125F7;search_select_hide=table117:FF:11906-125F7
 }}

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FF:11906-125F7: Difference between revisions

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Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0