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{{f5samples
{{f5samples
|id=FF:11906-125F7
|DRA_sample_Accession=CAGE@SAMD00005907
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874;DRZ011839;DRZ013224
|sample_id=11906
|ancestors_in_anatomy_facet=
|rna_tube_id=125F7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_box=125
|rna_position=F7
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=33-34
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=23
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.94
|rna_od260/280=2.05
|sample_cell_type=T cell
|sample_cell_line=
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=2.5186
|rna_concentration=0.25186
|sample_note=
|profile_hcage=CNhs13512,LSID1025,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000813,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000896,CL:0000897,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Changed from previous label. TODO: full classification
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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chr3:71542747..71542766,-!p34@FOXP1!1.02!9.41!FOXP1;;chr4:149366111..149366128,-!p7@NR3C2!1.02!9.41!NR3C2;;chr17:36861675..36861697,+!p3@MLLT6!1.01!21.95!MLLT6;;chr9:102584262..102584276,+!p1@NR4A3!1.01!20.91!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!1.01!12.54!THAP2;;chr18:77160282..77160343,+!p2@NFATC1!1.00!57.49!NFATC1;;chr3:114819124..114819200,-!p3@ZBTB20!0.99!20.91!ZBTB20;;chr2:43453734..43453751,-!p1@ZFP36L2!0.98!938.73!ZFP36L2;;chr15:60884706..60884743,-!p1@RORA!0.98!44.95!RORA;;chr7:64126503..64126528,+!p1@ZNF107!0.97!60.63!ZNF107;;chr2:148778973..148779035,+!p3@MBD5!0.97!21.95!MBD5;;chr15:60884747..60884774,-!p3@RORA!0.97!20.91!RORA;;chr8:41909982..41910009,-!p2@KAT6A!0.97!9.41!KAT6A;;chr5:133477905..133477956,+!p5@TCF7!0.97!8.36!TCF7;;chr17:38020392..38020477,-!p1@IKZF3!0.97!8.36!IKZF3;;chr19:16435423..16435484,+!p5@KLF2!0.97!8.36!KLF2;;chr9:20620829..20620848,-!p7@MLLT3!0.97!8.36!MLLT3;;chr20:51589835..51589848,+!p5@TSHZ2!0.97!8.36!TSHZ2;;chr4:149363475..149363492,-!p2@NR3C2!0.97!8.36!NR3C2;;chr7:21467674..21467727,+!p1@SP4!0.96!33.45!SP4;;chr1:8585945..8586056,-!p3@RERE!0.96!28.22!RERE;;chr19:19729477..19729542,-!p1@PBX4!0.96!17.77!PBX4;;chr19:58694742..58694800,+!p2@ZNF274!0.95!33.45!ZNF274;;chr19:52674696..52674758,-!p1@ZNF836!0.95!24.04!ZNF836;;chr11:128563948..128564003,+!p1@FLI1!0.94!97.22!FLI1;;chr2:208394817..208394834,+!p3@CREB1!0.94!32.41!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.32!TSC22D3;;chr1:45805693..45805718,+!p3@TOE1!0.93!16.73!TOE1;;chr8:81397820..81397836,+!p2@ZBTB10!0.93!9.41!ZBTB10;;chr5:131826457..131826514,-!p1@IRF1!0.92!296.88!IRF1;;chr3:23986824..23986848,+!p2@NR1D2!0.92!42.86!NR1D2;;chr19:12405606..12405629,-!p2@ZNF44!0.92!14.63!ZNF44;;chr9:117150303..117150312,-!p3@AKNA!0.92!9.41!AKNA;;chr7:50344144..50344157,+!p6@IKZF1!0.92!7.32!IKZF1;;chr4:109089996..109090012,-!p5@LEF1!0.92!7.32!LEF1;;chr19:45972203..45972226,+!p5@FOSB!0.92!7.32!FOSB;;chr19:54041574..54041589,+!p6@ZNF331!0.92!7.32!ZNF331;;chr1:92951607..92951661,-!p1@GFI1!0.92!7.32!GFI1;;chr2:208031542..208031595,-!p2@KLF7!0.91!52.27!KLF7;;chr6:143266297..143266356,-!p1@HIVEP2!0.91!35.54!HIVEP2;;chr6:12008986..12009016,+!p3@HIVEP1!0.91!23.00!HIVEP1;;chr4:38665810..38665827,+!p1@KLF3!0.90!105.58!KLF3;;chr15:31619326..31619390,+!p2@KLF13!0.90!84.67!KLF13;;chr20:44600496..44600541,-!p2@ZNF335!0.90!18.82!ZNF335;;chr13:41240737..41240787,-!p1@FOXO1!0.89!84.67!FOXO1;;chr19:21512202..21512225,-!p1@ZNF708!0.89!36.59!ZNF708;;chr6:15249128..15249177,+!p4@JARID2!0.89!12.54!JARID2;;chr1:41827095..41827155,+!p1@FOXO6!0.89!9.41!FOXO6;;chr13:74708269..74708291,-!p7@KLF12!0.89!9.41!KLF12;;chr14:69262947..69262986,-!p3@ZFP36L1!0.89!8.36!ZFP36L1;;chr13:74708029..74708077,-!p2@KLF12!0.88!19.86!KLF12;;chrX:106960221..106960236,-!p3@TSC22D3!0.88!18.82!TSC22D3;;chr9:114287433..114287513,+!p1@ZNF483!0.88!17.77!ZNF483;;chr19:38085633..38085706,-!p1@ZNF571!0.88!17.77!ZNF571;;chr7:21467642..21467671,+!p2@SP4!0.88!15.68!SP4;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.45!NR4A3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.87!351.24!NFKBIZ;;chr3:71179699..71179744,-!p2@FOXP1!0.87!51.22!FOXP1;;chr17:40440481..40440550,+!p1@STAT5A!0.87!49.13!STAT5A;;chr19:20748574..20748599,-!p1@ZNF737!0.87!40.77!ZNF737;;chr19:12405645..12405685,-!p1@ZNF44!0.87!24.04!ZNF44;;chr9:3525867..3525902,-!p3@RFX3!0.87!23.00!RFX3;;chr9:20622444..20622468,-!p2@MLLT3!0.87!21.95!MLLT3;;chr14:65569101..65569119,-!p3@MAX!0.86!20.91!MAX;;chr14:99737850..99737852,-!p3@BCL11B!0.86!6.27!BCL11B;;chr17:38020481..38020506,-!p7@IKZF3!0.86!6.27!IKZF3;;chr17:38020557..38020572,-!p4@IKZF3!0.86!6.27!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.86!6.27!KDM5D;;chr19:38183138..38183157,-!p2@ZNF781!0.86!6.27!ZNF781;;chr20:56195474..56195506,-!p1@ZBP1!0.86!6.27!ZBP1;;chr10:35416125..35416138,+!p10@CREM!0.85!7.32!CREM;;chr14:90085458..90085557,-!p1@FOXN3!0.84!66.90!FOXN3;;chr18:47814186..47814232,-!p2@CXXC1!0.84!12.54!CXXC1;;chr17:36861735..36861755,+!p4@MLLT6!0.84!10.45!MLLT6;;chr9:20621927..20621996,-!p3@MLLT3!0.84!10.45!MLLT3;;chr19:49140609..49140643,-!p1@DBP!0.83!34.50!DBP;;chr5:172483347..172483407,+!p1@C5orf41!0.82!44.95!CREBRF;;chr5:132299339..132299359,-!p4@AFF4!0.82!28.22!AFF4;;chr2:231084659..231084721,-!p1@SP110!0.81!136.94!SP110;;chr11:128392309..128392350,-!p3@ETS1!0.81!13.59!ETS1;;chr12:133562945..133562958,+!p2@ZNF26!0.81!10.45!ZNF26;;chr10:104154246..104154347,+!p3@NFKB2!0.80!35.54!NFKB2;;chr19:37096139..37096170,-!p2@ZNF529!0.80!15.68!ZNF529;;chr14:75988771..75988826,+!p1@BATF!0.80!7.32!BATF;;chr6:35227247..35227280,+!p3@ZNF76!0.80!7.32!ZNF76;;chr9:20622478..20622525,-!p1@MLLT3!0.79!43.90!MLLT3;;chr7:64363638..64363667,+!p1@ZNF273!0.79!28.22!ZNF273;;chr19:35455110..35455149,-!p1@ZNF792!0.79!10.45!ZNF792;;chr17:56565257..56565283,-!p2@HSF5!0.79!5.23!HSF5;;chr19:12405588..12405595,-!p4@ZNF44!0.79!5.23!ZNF44;;chr5:133473765..133473784,+!p7@TCF7!0.79!5.23!TCF7;;chr6:152011654..152011682,+!p1@ESR1!0.79!5.23!ESR1;;chr7:137620684..137620711,-!p4@CREB3L2!0.79!5.23!CREB3L2;;c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19:14800849..14800917,+!p1@ZNF333!0.38!13.59!ZNF333;;chr7:99156434..99156510,+!p2@ZNF655!0.38!12.54!ZNF655;;chr19:35264089..35264146,-!p1@ZNF599!0.38!10.45!ZNF599;;chr19:56915668..56915732,+!p1@ZNF583!0.38!7.32!ZNF583;;chr3:150126136..150126158,+!p4@TSC22D2!0.38!7.32!TSC22D2;;chr17:42298339..42298361,-!p5@UBTF!0.38!4.18!UBTF;;chr19:52408227..52408243,-!p2@ZNF649!0.38!4.18!ZNF649;;chr12:53848505..53848532,+!p4@PCBP2!0.38!4.18!PCBP2;;chr14:74386613..74386616,+!p7@ZNF410!0.38!2.09!ZNF410;;chr3:23986762..23986821,+!p1@NR1D2!0.37!32.41!NR1D2;;chr3:101395963..101395993,-!p1@ZBTB11!0.37!31.36!ZBTB11;;chr19:58609577..58609628,-!p1@ZSCAN18!0.37!26.13!ZSCAN18;;chr4:106068026..106068084,+!p1@TET2!0.37!18.82!TET2;;chr5:178286925..178287007,+!p1@ZNF354B!0.37!11.50!ZNF354B;;chr19:53030906..53030952,+!p1@ZNF808!0.37!7.32!ZNF808;;chr19:53758094..53758147,-!p1@ZNF677!0.37!7.32!ZNF677;;chr1:117602932..117602973,+!p1@TTF2!0.37!7.32!TTF2;;chr18:72922743..72922761,+!p3@TSHZ1!0.37!6.27!TSHZ1;;chr7:148892557..148892580,+!p4@ZNF282!0.37!5.23!ZNF282;;chr19:35225078..35225120,+!p2@ZNF181!0.37!4.18!ZNF181;;chr17:36873780..36873800,+!p5@MLLT6!0.37!2.09!MLLT6;;chr19:12551824..12551846,-!p2@ZNF443!0.37!2.09!ZNF443;;chr12:125052195..125052212,-!p11@NCOR2!0.37!2.09!NCOR2;;chr12:133613902..133613924,+!p4@ZNF84!0.37!2.09!ZNF84;;chr6:136599737..136599767,-!p2@BCLAF1!0.37!2.09!BCLAF1;;chr19:57078386..57078407,+!p3@ZNF470!0.37!2.09!ZNF470;;chr1:45805788..45805801,+!p6@TOE1!0.37!2.09!TOE1;;chr1:6640110..6640130,+!p2@ZBTB48!0.37!2.09!ZBTB48;;chr20:306221..306232,+!p4@SOX12!0.37!2.09!SOX12;;chr7:64467057..64467078,-!p1@ZNF117!0.36!38.68!ZNF117;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.36!29.27!LCOR;;chr6:7107939..7107993,+!p1@RREB1!0.36!24.04!RREB1;;chr2:217277169..217277266,+!p1@SMARCAL1!0.36!20.91!SMARCAL1;;chr12:53574464..53574539,+!p1@ZNF740!0.36!19.86!ZNF740;;chr17:40897043..40897087,-!p1@EZH1!0.36!17.77!EZH1;;chr22:21356378..21356422,-!p2@THAP7!0.36!17.77!THAP7;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.36!15.68!ZNF564;;chr16:1662351..1662442,+!p1@CRAMP1L!0.36!14.63!CRAMP1L;;chr3:40518599..40518664,+!p1@ZNF619!0.36!11.50!ZNF619;;chr4:140005341..140005411,-!p3@ELF2!0.36!10.45!ELF2;;chr1:249153268..249153298,-!p1@ZNF692!0.36!10.45!ZNF692;;chr19:58662139..58662182,-!p1@ZNF329!0.36!9.41!ZNF329;;chr6:134274295..134274308,+!p2@TBPL1!0.36!6.27!TBPL1;;chr19:54041382..54041437,+!p3@ZNF331!0.36!5.23!ZNF331;;chr10:38146510..38146576,-!p1@ZNF248!0.36!5.23!ZNF248;;chr19:8942909..8942953,-!p2@ZNF558!0.36!4.18!ZNF558;;chr7:129251614..129251630,+!p2@NRF1!0.36!4.18!NRF1;;chr4:76439649..76439662,+!p2@THAP6!0.36!4.18!THAP6;;chr5:142784101..142784130,-!p4@NR3C1!0.36!3.14!NR3C1;;chr1:158979680..158979683,+!p9@IFI16!0.36!2.09!IFI16;;chr1:27023383..27023416,+!p7@ARID1A!0.36!2.09!ARID1A;;chr19:37341260..37341284,+!p2@ZNF345!0.36!2.09!ZNF345;;chr7:127032741..127032777,-!p1@ZNF800!0.35!71.08!ZNF800;;chrX:153363125..153363182,-!p1@MECP2!0.35!54.36!MECP2;;chr18:47814032..47814079,-!p1@CXXC1!0.35!37.63!CXXC1;;chr19:8579030..8579061,-!p1@ZNF414!0.35!32.41!ZNF414;;chr19:37808778..37808827,+!p1@HKR1!0.35!21.95!HKR1;;chr16:2273558..2273637,+!p1@E4F1!0.35!18.82!E4F1;;chr6:35310312..35310359,+!p1@PPARD!0.35!17.77!PPARD;;chr19:40562072..40562143,-!p1@ZNF780B!0.35!17.77!ZNF780B;;chr19:58427951..58427984,-!p1@ZNF417!0.35!13.59!ZNF417;;chr13:27998831..27998851,+!p2@GTF3A!0.35!11.50!GTF3A;;chr16:4817129..4817198,-!p1@ZNF500!0.35!10.45!ZNF500;;chr19:12175535..12175554,+!p1@ZNF844!0.35!10.45!ZNF844;;chr17:16472486..16472533,-!p1@ZNF287!0.35!9.41!ZNF287;;chr2:174830564..174830605,-!p3@SP3!0.35!9.41!SP3;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.35!8.36!ZKSCAN4;;chr8:42698194..42698239,-!p2@THAP1!0.35!8.36!THAP1;;chr3:101395936..101395962,-!p2@ZBTB11!0.35!7.32!ZBTB11;;chr19:58111241..58111292,+!p1@ZNF530!0.35!6.27!ZNF530;;chrX:106959661..106959763,-!p4@TSC22D3!0.35!5.23!TSC22D3;;chr19:58071166..58071189,-!p2@ZNF550!0.35!4.18!ZNF550;;chr19:58951496..58951539,-!p1@ZNF132!0.35!4.18!ZNF132;;chr1:249153114..249153175,-!p3@ZNF692!0.35!3.14!ZNF692;;chr20:52210368..52210384,-!p1@ZNF217!0.35!3.14!ZNF217;;chr19:53324884..53324886,-!p1@ZNF28!0.35!2.09!ZNF28;;chr14:62213827..62213853,+!p6@HIF1A!0.35!2.09!HIF1A;;chr2:191878874..191878938,-!p1@STAT1!0.34!107.67!STAT1;;chr2:169312725..169312810,+!p1@CERS6!0.34!48.09!CERS6;;chr3:14989076..14989113,+!p1@NR2C2!0.34!40.77!NR2C2;;chr4:76439665..76439699,+!p1@THAP6!0.34!27.18!THAP6;;chr3:129158715..129158766,-!p2@MBD4!0.34!18.82!MBD4;;chr5:142784003..142784065,-!p2@NR3C1!0.34!15.68!NR3C1;;chr18:45456930..45456967,-!p2@SMAD2!0.34!10.45!SMAD2;;chr19:57922521..57922550,+!p1@ZNF17!0.34!7.32!ZNF17;;chr4:57775059..57775139,+!p2@REST!0.34!6.27!REST;;chrX:24167548..24167617,+!p2@ZFX!0.34!5.23!ZFX;;chr3:107241882..107241904,+!p2@BBX!0.34!4.18!BBX;;chr11:615570..615721,-!p2@IRF7!0.34!3.14!IRF7;;chr12:53614155..53614187,-!p3@RARG!0.34!3.14!RARG;;chr19:12405689..12405707,-!p3@ZNF44!0.34!3.14!ZNF44;;chr19:36909484..36909525,-!p2@ZFP82!0.34!3.14!ZFP82;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.ctss.bed.gz
|id=FF:11906-125F7
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13512
|library_id_phase_based=2:CNhs13512
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11906
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11906
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13512,LSID1025,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.25186
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=33-34
|rna_od260/230=1.94
|rna_od260/280=2.05
|rna_position=F7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=125F7
|rna_weight_ug=2.5186
|sample_age=23
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=T cell
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.61858431684261e-210!GO:0043227;membrane-bound organelle;6.49467304726363e-187!GO:0043231;intracellular membrane-bound organelle;1.46301923497833e-186!GO:0043226;organelle;1.73708411747408e-175!GO:0043229;intracellular organelle;5.01999405650674e-175!GO:0005737;cytoplasm;2.75852222307522e-120!GO:0044422;organelle part;8.85301434146825e-108!GO:0044446;intracellular organelle part;2.93794842006714e-106!GO:0005634;nucleus;1.57324809962084e-102!GO:0044237;cellular metabolic process;2.69034199914237e-100!GO:0043170;macromolecule metabolic process;1.29410187587439e-99!GO:0044238;primary metabolic process;5.4065308475382e-96!GO:0032991;macromolecular complex;2.52001180128449e-86!GO:0030529;ribonucleoprotein complex;4.95547161575154e-86!GO:0003723;RNA binding;1.03404998107964e-83!GO:0044444;cytoplasmic part;9.76733811816237e-82!GO:0044428;nuclear part;3.42621075132325e-77!GO:0043283;biopolymer metabolic process;2.14594308099993e-69!GO:0043233;organelle lumen;5.33172105789449e-67!GO:0031974;membrane-enclosed lumen;5.33172105789449e-67!GO:0010467;gene expression;3.89744252100003e-64!GO:0006396;RNA processing;2.28802452391315e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.10552389325127e-58!GO:0005739;mitochondrion;1.44658869924711e-54!GO:0006412;translation;1.38092971088204e-49!GO:0031981;nuclear lumen;1.93452168146735e-48!GO:0016071;mRNA metabolic process;6.14465659669571e-48!GO:0005840;ribosome;7.08393466568774e-48!GO:0019538;protein metabolic process;7.44143042220757e-47!GO:0003676;nucleic acid binding;1.76572445300292e-46!GO:0044267;cellular protein metabolic process;1.26862897976361e-45!GO:0044260;cellular macromolecule metabolic process;3.59741512386678e-45!GO:0033036;macromolecule localization;1.29802863089243e-43!GO:0005515;protein binding;5.75385057906019e-42!GO:0003735;structural constituent of ribosome;4.12747887468195e-41!GO:0015031;protein transport;4.14234368748544e-41!GO:0043234;protein complex;2.22054820666745e-40!GO:0006397;mRNA processing;2.73406779391201e-40!GO:0008380;RNA splicing;8.66847520833105e-40!GO:0008104;protein localization;2.61471927402177e-39!GO:0045184;establishment of protein localization;4.65606699972835e-39!GO:0044429;mitochondrial part;5.31585476153938e-38!GO:0033279;ribosomal subunit;1.91185333828465e-37!GO:0009059;macromolecule biosynthetic process;4.75306775412345e-37!GO:0016070;RNA metabolic process;1.69501991660774e-36!GO:0031090;organelle membrane;5.386743636814e-36!GO:0031967;organelle envelope;6.3824559695778e-36!GO:0031975;envelope;1.28022697288422e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.25206509525801e-32!GO:0005829;cytosol;1.47047322544642e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.14568035872295e-31!GO:0005654;nucleoplasm;2.33811673318266e-30!GO:0005681;spliceosome;4.16293910870992e-30!GO:0044249;cellular biosynthetic process;1.39709825376133e-29!GO:0046907;intracellular transport;1.91272654418279e-29!GO:0006886;intracellular protein transport;1.96797730606006e-29!GO:0006259;DNA metabolic process;1.93379071976352e-28!GO:0009058;biosynthetic process;9.38914056267609e-28!GO:0065003;macromolecular complex assembly;5.49678175430495e-27!GO:0016043;cellular component organization and biogenesis;2.10132019763733e-26!GO:0044445;cytosolic part;3.13374548011242e-26!GO:0006512;ubiquitin cycle;6.95598515364471e-25!GO:0044451;nucleoplasm part;2.2926537507217e-24!GO:0000166;nucleotide binding;6.1026241098663e-24!GO:0022607;cellular component assembly;8.20053061915066e-24!GO:0005740;mitochondrial envelope;2.99136510349811e-23!GO:0031966;mitochondrial membrane;1.46280094246883e-22!GO:0019866;organelle inner membrane;3.25462239570396e-22!GO:0006996;organelle organization and biogenesis;2.66814915666442e-21!GO:0016874;ligase activity;7.31933779948124e-21!GO:0005743;mitochondrial inner membrane;1.91612304104104e-20!GO:0022618;protein-RNA complex assembly;1.95275761316249e-20!GO:0051641;cellular localization;6.98594907037104e-20!GO:0015935;small ribosomal subunit;1.05249584674426e-19!GO:0051649;establishment of cellular localization;1.96139090571634e-19!GO:0005730;nucleolus;2.9041367437725e-19!GO:0043412;biopolymer modification;5.34494868266314e-19!GO:0015934;large ribosomal subunit;8.76733790353416e-19!GO:0006119;oxidative phosphorylation;1.83719080842247e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.14388182886392e-18!GO:0016462;pyrophosphatase activity;3.57285411504394e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;3.84230516629707e-18!GO:0016604;nuclear body;9.28564457405471e-18!GO:0017111;nucleoside-triphosphatase activity;9.28564457405471e-18!GO:0044265;cellular macromolecule catabolic process;9.36032050555167e-18!GO:0044455;mitochondrial membrane part;1.03684031553364e-17!GO:0006605;protein targeting;1.62594390209685e-17!GO:0008135;translation factor activity, nucleic acid binding;2.31181618239728e-17!GO:0031980;mitochondrial lumen;3.41755686767171e-17!GO:0005759;mitochondrial matrix;3.41755686767171e-17!GO:0043285;biopolymer catabolic process;2.12215357007777e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;3.36454311724511e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.77210800430738e-16!GO:0006464;protein modification process;5.75432269090984e-16!GO:0043228;non-membrane-bound organelle;7.06435231928956e-16!GO:0043232;intracellular non-membrane-bound organelle;7.06435231928956e-16!GO:0043687;post-translational protein modification;8.66637985175809e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25083094729087e-15!GO:0019941;modification-dependent protein catabolic process;1.40808731778016e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.40808731778016e-15!GO:0006323;DNA packaging;1.63991924218033e-15!GO:0006913;nucleocytoplasmic transport;1.68031211915721e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.0522825366231e-15!GO:0044257;cellular protein catabolic process;2.23091895829609e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.29034258343237e-15!GO:0032553;ribonucleotide binding;2.29034258343237e-15!GO:0032555;purine ribonucleotide binding;2.29034258343237e-15!GO:0051169;nuclear transport;2.51082984916579e-15!GO:0016887;ATPase activity;3.06566135225701e-15!GO:0017076;purine nucleotide binding;4.76438392584491e-15!GO:0006457;protein folding;9.63290400996423e-15!GO:0042623;ATPase activity, coupled;1.00156113971205e-14!GO:0016607;nuclear speck;1.15573285020404e-14!GO:0008134;transcription factor binding;1.37450114945289e-14!GO:0009057;macromolecule catabolic process;1.73813482495504e-14!GO:0051276;chromosome organization and biogenesis;1.88949620938473e-14!GO:0005524;ATP binding;3.00190131990717e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.43163534637464e-14!GO:0000375;RNA splicing, via transesterification reactions;3.43163534637464e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.43163534637464e-14!GO:0005746;mitochondrial respiratory chain;3.65326609686276e-14!GO:0032559;adenyl ribonucleotide binding;7.02062624000386e-14!GO:0004386;helicase activity;7.78598240132042e-14!GO:0006413;translational initiation;1.62217697818229e-13!GO:0005635;nuclear envelope;1.9161356537464e-13!GO:0030554;adenyl nucleotide binding;1.92873878820318e-13!GO:0003743;translation initiation factor activity;2.1441651205667e-13!GO:0031965;nuclear membrane;3.04407950607099e-13!GO:0012505;endomembrane system;3.62757647031074e-13!GO:0012501;programmed cell death;5.81451280170213e-13!GO:0006915;apoptosis;8.10398246109498e-13!GO:0006974;response to DNA damage stimulus;1.04979000023298e-12!GO:0008219;cell death;1.58926893621741e-12!GO:0016265;death;1.58926893621741e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.87099582626099e-12!GO:0003954;NADH dehydrogenase activity;1.87099582626099e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.87099582626099e-12!GO:0044453;nuclear membrane part;2.1440335524075e-12!GO:0042254;ribosome biogenesis and assembly;2.63428385694183e-12!GO:0008026;ATP-dependent helicase activity;3.56601026783097e-12!GO:0016568;chromatin modification;3.68321073900558e-12!GO:0006403;RNA localization;4.35976001125422e-12!GO:0050657;nucleic acid transport;5.37294581546681e-12!GO:0051236;establishment of RNA localization;5.37294581546681e-12!GO:0050658;RNA transport;5.37294581546681e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.51065920278106e-12!GO:0019222;regulation of metabolic process;6.32424306315105e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.12166089865618e-11!GO:0030163;protein catabolic process;1.13176001185011e-11!GO:0050794;regulation of cellular process;1.35078176064176e-11!GO:0005643;nuclear pore;1.49564830792289e-11!GO:0006446;regulation of translational initiation;1.68244585087024e-11!GO:0017038;protein import;2.20743696200394e-11!GO:0051082;unfolded protein binding;2.38786229162877e-11!GO:0044248;cellular catabolic process;3.02265030434162e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.55964708535261e-11!GO:0042773;ATP synthesis coupled electron transport;3.55964708535261e-11!GO:0006281;DNA repair;4.58598449899028e-11!GO:0008639;small protein conjugating enzyme activity;4.9995427165063e-11!GO:0004842;ubiquitin-protein ligase activity;6.6674981969624e-11!GO:0019787;small conjugating protein ligase activity;9.02555146887251e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.54686726551973e-11!GO:0045271;respiratory chain complex I;9.54686726551973e-11!GO:0005747;mitochondrial respiratory chain complex I;9.54686726551973e-11!GO:0005761;mitochondrial ribosome;1.18724855987481e-10!GO:0000313;organellar ribosome;1.18724855987481e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.87729472072593e-10!GO:0048193;Golgi vesicle transport;3.27318107149958e-10!GO:0031323;regulation of cellular metabolic process;3.29453641850164e-10!GO:0006399;tRNA metabolic process;3.65805334382278e-10!GO:0051028;mRNA transport;3.91399904059916e-10!GO:0065002;intracellular protein transport across a membrane;5.76996255022535e-10!GO:0008270;zinc ion binding;5.98879567279345e-10!GO:0006333;chromatin assembly or disassembly;6.03079021609359e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.80264250311848e-10!GO:0046930;pore complex;1.33391065744373e-09!GO:0006350;transcription;1.41160749948617e-09!GO:0051186;cofactor metabolic process;1.55068517510853e-09!GO:0065004;protein-DNA complex assembly;2.05219434075347e-09!GO:0003712;transcription cofactor activity;2.18676371444315e-09!GO:0009259;ribonucleotide metabolic process;3.01474736380035e-09!GO:0005694;chromosome;3.55115519556627e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.70496473205228e-09!GO:0042981;regulation of apoptosis;3.94688609120941e-09!GO:0016072;rRNA metabolic process;3.94941314856996e-09!GO:0043067;regulation of programmed cell death;5.17442730104526e-09!GO:0006364;rRNA processing;5.84134141853876e-09!GO:0009260;ribonucleotide biosynthetic process;6.56469662651139e-09!GO:0010468;regulation of gene expression;8.41809741885575e-09!GO:0016881;acid-amino acid ligase activity;1.05240332685842e-08!GO:0008565;protein transporter activity;1.05368791504743e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.75619343835106e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.75619343835106e-08!GO:0006164;purine nucleotide biosynthetic process;1.92982365541249e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.06182056595304e-08!GO:0016787;hydrolase activity;2.18707209337587e-08!GO:0007049;cell cycle;2.22455858723274e-08!GO:0006793;phosphorus metabolic process;2.22486229838979e-08!GO:0006796;phosphate metabolic process;2.22486229838979e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.44734458092078e-08!GO:0043566;structure-specific DNA binding;2.57113403677802e-08!GO:0048770;pigment granule;2.92444713686827e-08!GO:0042470;melanosome;2.92444713686827e-08!GO:0006163;purine nucleotide metabolic process;3.03676346012603e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.33337804899994e-08!GO:0019829;cation-transporting ATPase activity;3.49058555190772e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.89397271528163e-08!GO:0009150;purine ribonucleotide metabolic process;4.29803170593224e-08!GO:0044427;chromosomal part;6.02694049007476e-08!GO:0000151;ubiquitin ligase complex;1.06809220319854e-07!GO:0003713;transcription coactivator activity;1.111619446183e-07!GO:0000785;chromatin;1.11217733666495e-07!GO:0051170;nuclear import;1.37517962104373e-07!GO:0005794;Golgi apparatus;1.37517962104373e-07!GO:0050789;regulation of biological process;1.42737270687941e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.49840402760592e-07!GO:0009719;response to endogenous stimulus;1.70012068352751e-07!GO:0032774;RNA biosynthetic process;1.87954608998009e-07!GO:0016310;phosphorylation;1.88574297491645e-07!GO:0006606;protein import into nucleus;2.04282203043689e-07!GO:0046914;transition metal ion binding;2.1390308731218e-07!GO:0006351;transcription, DNA-dependent;2.14237813646436e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.43270767203353e-07!GO:0006732;coenzyme metabolic process;2.81094250806839e-07!GO:0032446;protein modification by small protein conjugation;2.90858325336237e-07!GO:0009060;aerobic respiration;3.52073529445747e-07!GO:0051726;regulation of cell cycle;4.52929307413108e-07!GO:0003697;single-stranded DNA binding;4.60756741732653e-07!GO:0051168;nuclear export;4.90138191715287e-07!GO:0045449;regulation of transcription;5.60036700782918e-07!GO:0016567;protein ubiquitination;6.52435425629026e-07!GO:0000074;regulation of progression through cell cycle;7.31754763863646e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.50713486987321e-07!GO:0015986;ATP synthesis coupled proton transport;7.66294915515458e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.66294915515458e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.77265093951786e-07!GO:0004812;aminoacyl-tRNA ligase activity;8.77265093951786e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.77265093951786e-07!GO:0006334;nucleosome assembly;9.74945114856432e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.13636828424648e-06!GO:0015399;primary active transmembrane transporter activity;1.13636828424648e-06!GO:0044432;endoplasmic reticulum part;1.25810924533121e-06!GO:0003724;RNA helicase activity;1.31284872076577e-06!GO:0031497;chromatin assembly;1.40326896936717e-06!GO:0043038;amino acid activation;1.86478345557985e-06!GO:0006418;tRNA aminoacylation for protein translation;1.86478345557985e-06!GO:0043039;tRNA aminoacylation;1.86478345557985e-06!GO:0004298;threonine endopeptidase activity;2.16080157751899e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.21838587171624e-06!GO:0016192;vesicle-mediated transport;2.32468034190472e-06!GO:0009141;nucleoside triphosphate metabolic process;2.50195731826369e-06!GO:0045333;cellular respiration;2.68493882403718e-06!GO:0000245;spliceosome assembly;2.78682600586492e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.82278540680201e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.82278540680201e-06!GO:0006754;ATP biosynthetic process;3.13604931090657e-06!GO:0006753;nucleoside phosphate metabolic process;3.13604931090657e-06!GO:0022402;cell cycle process;3.17036047799779e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.17570037206666e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.23082837214148e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.23082837214148e-06!GO:0046034;ATP metabolic process;3.43372011143726e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.47675685440072e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.57612494519071e-06!GO:0016563;transcription activator activity;3.62425739123648e-06!GO:0005768;endosome;3.87613000723977e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.14816236859485e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.14816236859485e-06!GO:0045259;proton-transporting ATP synthase complex;4.44545182320946e-06!GO:0016779;nucleotidyltransferase activity;4.86296985590782e-06!GO:0006401;RNA catabolic process;4.86296985590782e-06!GO:0006366;transcription from RNA polymerase II promoter;4.9068023855053e-06!GO:0051188;cofactor biosynthetic process;5.02999345476864e-06!GO:0007005;mitochondrion organization and biogenesis;5.73621090062317e-06!GO:0016740;transferase activity;5.97007514180555e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.16385835813074e-06!GO:0006355;regulation of transcription, DNA-dependent;6.29488552858039e-06!GO:0006916;anti-apoptosis;6.37015524810743e-06!GO:0005789;endoplasmic reticulum membrane;6.95855803731313e-06!GO:0009056;catabolic process;7.48142702074108e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.03499219404132e-06!GO:0051246;regulation of protein metabolic process;9.55841436787164e-06!GO:0003677;DNA binding;9.55870200426897e-06!GO:0019899;enzyme binding;9.91222723601106e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.09540522807664e-05!GO:0045786;negative regulation of progression through cell cycle;1.42000318637268e-05!GO:0006260;DNA replication;1.52664775666584e-05!GO:0006402;mRNA catabolic process;1.76632175386534e-05!GO:0009055;electron carrier activity;1.78981550250657e-05!GO:0043069;negative regulation of programmed cell death;1.87331414639237e-05!GO:0005783;endoplasmic reticulum;1.92831439603398e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;1.94440869943989e-05!GO:0016363;nuclear matrix;1.94692683643337e-05!GO:0043492;ATPase activity, coupled to movement of substances;1.97354472629175e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.08145699424255e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.1805368213196e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.52730632472852e-05!GO:0008186;RNA-dependent ATPase activity;2.62620272359568e-05!GO:0043066;negative regulation of apoptosis;2.80455465805796e-05!GO:0006613;cotranslational protein targeting to membrane;2.90684898151571e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.08032213902325e-05!GO:0006099;tricarboxylic acid cycle;3.90033703828472e-05!GO:0046356;acetyl-CoA catabolic process;3.90033703828472e-05!GO:0043623;cellular protein complex assembly;3.96689791724296e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.0126553116547e-05!GO:0006084;acetyl-CoA metabolic process;4.65854463763143e-05!GO:0007243;protein kinase cascade;5.61142591715974e-05!GO:0030120;vesicle coat;7.11031534815223e-05!GO:0030662;coated vesicle membrane;7.11031534815223e-05!GO:0048523;negative regulation of cellular process;7.15289365917013e-05!GO:0006461;protein complex assembly;7.60806374509905e-05!GO:0009108;coenzyme biosynthetic process;8.02968343952802e-05!GO:0004004;ATP-dependent RNA helicase activity;8.95135322803277e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000100474040776942!GO:0008033;tRNA processing;0.000102406297887065!GO:0048475;coated membrane;0.000122378284548382!GO:0030117;membrane coat;0.000122378284548382!GO:0003690;double-stranded DNA binding;0.00012385717126071!GO:0006752;group transfer coenzyme metabolic process;0.000132168731614871!GO:0005793;ER-Golgi intermediate compartment;0.00013766374312111!GO:0016564;transcription repressor activity;0.000150976653730505!GO:0008234;cysteine-type peptidase activity;0.000188649059073533!GO:0009109;coenzyme catabolic process;0.000189211713512648!GO:0003729;mRNA binding;0.000234405334118544!GO:0060090;molecular adaptor activity;0.000237917068918317!GO:0031324;negative regulation of cellular metabolic process;0.00024127557165901!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000244342802096473!GO:0004674;protein serine/threonine kinase activity;0.00026367307669342!GO:0005762;mitochondrial large ribosomal subunit;0.000275189142333097!GO:0000315;organellar large ribosomal subunit;0.000275189142333097!GO:0006612;protein targeting to membrane;0.000280294028766284!GO:0044431;Golgi apparatus part;0.000287191508665993!GO:0009117;nucleotide metabolic process;0.000306377953822651!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000310345879531595!GO:0032259;methylation;0.000334309383032649!GO:0043021;ribonucleoprotein binding;0.000365119179537731!GO:0065009;regulation of a molecular function;0.000365342872546763!GO:0065007;biological regulation;0.000400394206279451!GO:0005885;Arp2/3 protein complex;0.000421104356693524!GO:0006891;intra-Golgi vesicle-mediated transport;0.000429359048542129!GO:0051187;cofactor catabolic process;0.000434600825118351!GO:0006611;protein export from nucleus;0.00046474023173933!GO:0006818;hydrogen transport;0.000467562937067315!GO:0005813;centrosome;0.000483760846516979!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000537224368984214!GO:0015992;proton transport;0.000543883879467404!GO:0043681;protein import into mitochondrion;0.000602573235419747!GO:0005769;early endosome;0.000675133420973688!GO:0043414;biopolymer methylation;0.000699936842106977!GO:0031072;heat shock protein binding;0.00072969413689487!GO:0016251;general RNA polymerase II transcription factor activity;0.000817025212178634!GO:0005667;transcription factor complex;0.000817025212178634!GO:0006405;RNA export from nucleus;0.00082022089405586!GO:0006310;DNA recombination;0.000861930570415976!GO:0048519;negative regulation of biological process;0.000871224244339633!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000892205112324142!GO:0000314;organellar small ribosomal subunit;0.000972326404127865!GO:0005763;mitochondrial small ribosomal subunit;0.000972326404127865!GO:0003899;DNA-directed RNA polymerase activity;0.00100386836945985!GO:0030384;phosphoinositide metabolic process;0.00100442224578114!GO:0016741;transferase activity, transferring one-carbon groups;0.00103694894126748!GO:0019843;rRNA binding;0.00104064675632526!GO:0006417;regulation of translation;0.00106255003767704!GO:0008168;methyltransferase activity;0.00119327975622765!GO:0004518;nuclease activity;0.00132301791195124!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00137944532325223!GO:0004527;exonuclease activity;0.00138805044032591!GO:0006917;induction of apoptosis;0.00140382824646441!GO:0044452;nucleolar part;0.00149255859739096!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00149821074758127!GO:0044440;endosomal part;0.00157113562496605!GO:0010008;endosome membrane;0.00157113562496605!GO:0009892;negative regulation of metabolic process;0.00157455354113364!GO:0008654;phospholipid biosynthetic process;0.00160472422745473!GO:0000786;nucleosome;0.00163912685453683!GO:0051427;hormone receptor binding;0.00179808940230873!GO:0005815;microtubule organizing center;0.00180458408898991!GO:0006607;NLS-bearing substrate import into nucleus;0.00181458290210804!GO:0012502;induction of programmed cell death;0.0018171769576628!GO:0006352;transcription initiation;0.00189070382917429!GO:0006650;glycerophospholipid metabolic process;0.00190545402371463!GO:0007006;mitochondrial membrane organization and biogenesis;0.00193463677324443!GO:0031326;regulation of cellular biosynthetic process;0.00193594444487339!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00210663891303586!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00210663891303586!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00210663891303586!GO:0006383;transcription from RNA polymerase III promoter;0.00226171382284779!GO:0006261;DNA-dependent DNA replication;0.00231534432015168!GO:0008632;apoptotic program;0.00235364700525642!GO:0005770;late endosome;0.00237102839390768!GO:0016197;endosome transport;0.00238143327446228!GO:0046489;phosphoinositide biosynthetic process;0.00265426550888643!GO:0051252;regulation of RNA metabolic process;0.00267979203044417!GO:0000139;Golgi membrane;0.00287144586847428!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00292583828314064!GO:0035257;nuclear hormone receptor binding;0.0031781470681433!GO:0006414;translational elongation;0.00326137552025925!GO:0016481;negative regulation of transcription;0.00326137552025925!GO:0051087;chaperone binding;0.00351550108770088!GO:0005684;U2-dependent spliceosome;0.00361438065061607!GO:0031625;ubiquitin protein ligase binding;0.00368756637669325!GO:0005525;GTP binding;0.00370100381633884!GO:0005070;SH3/SH2 adaptor activity;0.00397010464258796!GO:0009165;nucleotide biosynthetic process;0.00425915469013543!GO:0043065;positive regulation of apoptosis;0.0042668210158912!GO:0003746;translation elongation factor activity;0.00432500385889866!GO:0022890;inorganic cation transmembrane transporter activity;0.0043784021859681!GO:0009615;response to virus;0.00439396397681923!GO:0006289;nucleotide-excision repair;0.00443176053690834!GO:0051539;4 iron, 4 sulfur cluster binding;0.00461364922219595!GO:0005798;Golgi-associated vesicle;0.00483507427985835!GO:0003678;DNA helicase activity;0.00484415051059971!GO:0046474;glycerophospholipid biosynthetic process;0.00492317732553933!GO:0019783;small conjugating protein-specific protease activity;0.00499450664210028!GO:0006839;mitochondrial transport;0.00507288917172598!GO:0003924;GTPase activity;0.00511818610093932!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00537822942586811!GO:0048500;signal recognition particle;0.00539606780277032!GO:0051789;response to protein stimulus;0.00549931179189976!GO:0006986;response to unfolded protein;0.00549931179189976!GO:0016584;nucleosome positioning;0.00554548067813536!GO:0043068;positive regulation of programmed cell death;0.00559141984495747!GO:0008312;7S RNA binding;0.00572544225791531!GO:0005773;vacuole;0.00575396200989082!GO:0006338;chromatin remodeling;0.00575656161764561!GO:0019867;outer membrane;0.00594728456848078!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00617041855440702!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00617041855440702!GO:0004843;ubiquitin-specific protease activity;0.00668264532044338!GO:0043488;regulation of mRNA stability;0.00672522563562475!GO:0043487;regulation of RNA stability;0.00672522563562475!GO:0004532;exoribonuclease activity;0.00683041087137093!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00683041087137093!GO:0006626;protein targeting to mitochondrion;0.00700922642790336!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00701051841435158!GO:0045047;protein targeting to ER;0.00701051841435158!GO:0003711;transcription elongation regulator activity;0.0076035272278869!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00813981809871606!GO:0031968;organelle outer membrane;0.00835381968521224!GO:0051540;metal cluster binding;0.00866693550595312!GO:0051536;iron-sulfur cluster binding;0.00866693550595312!GO:0005741;mitochondrial outer membrane;0.0089222540489661!GO:0015980;energy derivation by oxidation of organic compounds;0.00929434754026203!GO:0009116;nucleoside metabolic process;0.00933719880265405!GO:0000323;lytic vacuole;0.00933719880265405!GO:0005764;lysosome;0.00933719880265405!GO:0003714;transcription corepressor activity;0.00938743250298416!GO:0047485;protein N-terminus binding;0.00956786106752256!GO:0000209;protein polyubiquitination;0.00961680585688578!GO:0009889;regulation of biosynthetic process;0.00965903312908937!GO:0042101;T cell receptor complex;0.00991013608595965!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00996991995137664!GO:0015002;heme-copper terminal oxidase activity;0.00996991995137664!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00996991995137664!GO:0004129;cytochrome-c oxidase activity;0.00996991995137664!GO:0004221;ubiquitin thiolesterase activity;0.0102221916665014!GO:0003684;damaged DNA binding;0.0102262114265488!GO:0040029;regulation of gene expression, epigenetic;0.0105105195037723!GO:0006497;protein amino acid lipidation;0.0105105195037723!GO:0031461;cullin-RING ubiquitin ligase complex;0.0105850133530588!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0108970599698778!GO:0016859;cis-trans isomerase activity;0.0108970599698778!GO:0007242;intracellular signaling cascade;0.0109001623295944!GO:0000059;protein import into nucleus, docking;0.0114067339117174!GO:0005774;vacuolar membrane;0.0114174935397322!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0114265415030919!GO:0030258;lipid modification;0.011562642600178!GO:0008408;3'-5' exonuclease activity;0.0119923300673472!GO:0030518;steroid hormone receptor signaling pathway;0.0122428378728204!GO:0005637;nuclear inner membrane;0.0125817200150769!GO:0003682;chromatin binding;0.013012030076983!GO:0016853;isomerase activity;0.0131743960994172!GO:0006595;polyamine metabolic process;0.0138443099441397!GO:0032200;telomere organization and biogenesis;0.0142533139194246!GO:0000723;telomere maintenance;0.0142533139194246!GO:0044438;microbody part;0.0143887337201168!GO:0044439;peroxisomal part;0.0143887337201168!GO:0005048;signal sequence binding;0.0144383494145839!GO:0006376;mRNA splice site selection;0.0147129374902381!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0147129374902381!GO:0045603;positive regulation of endothelial cell differentiation;0.0149546487582154!GO:0016585;chromatin remodeling complex;0.0150414978942458!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0153007180276585!GO:0008624;induction of apoptosis by extracellular signals;0.0159347374869738!GO:0009161;ribonucleoside monophosphate metabolic process;0.0160780052582251!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0160780052582251!GO:0033116;ER-Golgi intermediate compartment membrane;0.016086792011763!GO:0006914;autophagy;0.0161230600358727!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0162505830459726!GO:0005669;transcription factor TFIID complex;0.0164421294729983!GO:0016570;histone modification;0.0166831127343637!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0167153683723256!GO:0010257;NADH dehydrogenase complex assembly;0.0167153683723256!GO:0033108;mitochondrial respiratory chain complex assembly;0.0167153683723256!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0168566183580054!GO:0008213;protein amino acid alkylation;0.0168680264710105!GO:0006479;protein amino acid methylation;0.0168680264710105!GO:0042110;T cell activation;0.0171789880237564!GO:0009112;nucleobase metabolic process;0.0176849989840377!GO:0050852;T cell receptor signaling pathway;0.0179694097521784!GO:0016569;covalent chromatin modification;0.0180116432461151!GO:0000278;mitotic cell cycle;0.0184634117202848!GO:0003725;double-stranded RNA binding;0.0193243934010366!GO:0044437;vacuolar part;0.0196500351451223!GO:0022415;viral reproductive process;0.0197066144583187!GO:0005521;lamin binding;0.019888918656699!GO:0000049;tRNA binding;0.0207252506642965!GO:0016272;prefoldin complex;0.0208694355944721!GO:0019901;protein kinase binding;0.0212710973773788!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0212710973773788!GO:0030658;transport vesicle membrane;0.0212710973773788!GO:0016788;hydrolase activity, acting on ester bonds;0.0217764712726869!GO:0030522;intracellular receptor-mediated signaling pathway;0.0228182099370525!GO:0048487;beta-tubulin binding;0.0228182099370525!GO:0032561;guanyl ribonucleotide binding;0.0229934236597807!GO:0019001;guanyl nucleotide binding;0.0229934236597807!GO:0046966;thyroid hormone receptor binding;0.023122647852067!GO:0007004;telomere maintenance via telomerase;0.0238634219102948!GO:0030137;COPI-coated vesicle;0.0239757607241011!GO:0006013;mannose metabolic process;0.0240093705035222!GO:0030118;clathrin coat;0.024202736962808!GO:0046822;regulation of nucleocytoplasmic transport;0.0243648442924691!GO:0030880;RNA polymerase complex;0.0244526618566946!GO:0008276;protein methyltransferase activity;0.0244759176693522!GO:0016790;thiolester hydrolase activity;0.0245561364803102!GO:0016763;transferase activity, transferring pentosyl groups;0.024689441419952!GO:0008017;microtubule binding;0.0247464999032324!GO:0030521;androgen receptor signaling pathway;0.0247472427817139!GO:0051251;positive regulation of lymphocyte activation;0.024970394273387!GO:0000738;DNA catabolic process, exonucleolytic;0.0253760666255703!GO:0005765;lysosomal membrane;0.0253769711075765!GO:0042158;lipoprotein biosynthetic process;0.0253769711075765!GO:0022406;membrane docking;0.0256346443329054!GO:0048278;vesicle docking;0.0256346443329054!GO:0006302;double-strand break repair;0.0256346443329054!GO:0031903;microbody membrane;0.0256346443329054!GO:0005778;peroxisomal membrane;0.0256346443329054!GO:0015631;tubulin binding;0.0257502881966431!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.025962067764095!GO:0008022;protein C-terminus binding;0.0266896387770301!GO:0019900;kinase binding;0.0269319430363826!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0272289344911138!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0275821331239664!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0283923179328672!GO:0008097;5S rRNA binding;0.0288499709829289!GO:0031124;mRNA 3'-end processing;0.0289965866774874!GO:0008139;nuclear localization sequence binding;0.0290313877177272!GO:0000287;magnesium ion binding;0.0292344890347635!GO:0005869;dynactin complex;0.0295063467050986!GO:0045947;negative regulation of translational initiation;0.029537087386259!GO:0043022;ribosome binding;0.029634445666709!GO:0016301;kinase activity;0.029812004702355!GO:0006406;mRNA export from nucleus;0.0298526438884409!GO:0000118;histone deacetylase complex;0.030236309672764!GO:0001772;immunological synapse;0.0306323206413153!GO:0006904;vesicle docking during exocytosis;0.0307225345583989!GO:0030663;COPI coated vesicle membrane;0.0307225345583989!GO:0030126;COPI vesicle coat;0.0307225345583989!GO:0050790;regulation of catalytic activity;0.0307609770174608!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.030968338104672!GO:0048471;perinuclear region of cytoplasm;0.0312295108535584!GO:0006506;GPI anchor biosynthetic process;0.031386747672956!GO:0009451;RNA modification;0.0316422624194984!GO:0045892;negative regulation of transcription, DNA-dependent;0.031718378888918!GO:0004197;cysteine-type endopeptidase activity;0.0319080688909748!GO:0051920;peroxiredoxin activity;0.0319080688909748!GO:0050870;positive regulation of T cell activation;0.0319080688909748!GO:0042608;T cell receptor binding;0.0321511924467862!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0321511924467862!GO:0046426;negative regulation of JAK-STAT cascade;0.0324232522714233!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0326452065180108!GO:0015923;mannosidase activity;0.0332126466041657!GO:0008287;protein serine/threonine phosphatase complex;0.0333655786425986!GO:0000119;mediator complex;0.0333655786425986!GO:0000178;exosome (RNase complex);0.0342487534930267!GO:0051052;regulation of DNA metabolic process;0.0354261355265075!GO:0001667;ameboidal cell migration;0.0360602519860222!GO:0032027;myosin light chain binding;0.0360602519860222!GO:0031123;RNA 3'-end processing;0.0369615094143367!GO:0006730;one-carbon compound metabolic process;0.0369788094431407!GO:0030660;Golgi-associated vesicle membrane;0.0374532232784479!GO:0004177;aminopeptidase activity;0.0375988485145119!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0375988485145119!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0375988485145119!GO:0009126;purine nucleoside monophosphate metabolic process;0.0375988485145119!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0375988485145119!GO:0007050;cell cycle arrest;0.037760159492465!GO:0031647;regulation of protein stability;0.0387081528766888!GO:0006505;GPI anchor metabolic process;0.0387741246793429!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0390254647295196!GO:0000428;DNA-directed RNA polymerase complex;0.0390254647295196!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0396411306185897!GO:0043621;protein self-association;0.0403734828469277!GO:0030132;clathrin coat of coated pit;0.0416096161594222!GO:0000175;3'-5'-exoribonuclease activity;0.0420417993197441!GO:0005832;chaperonin-containing T-complex;0.0429349761337192!GO:0050811;GABA receptor binding;0.0434425307968348!GO:0000090;mitotic anaphase;0.044152781659613!GO:0051322;anaphase;0.044152781659613!GO:0008320;protein transmembrane transporter activity;0.0446679090325063!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0450102456301908!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0450102456301908!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0450102456301908!GO:0000123;histone acetyltransferase complex;0.0452278162040395!GO:0005777;peroxisome;0.0454321100251089!GO:0042579;microbody;0.0454321100251089!GO:0007265;Ras protein signal transduction;0.0455240179617938!GO:0045309;protein phosphorylated amino acid binding;0.0455240179617938!GO:0006465;signal peptide processing;0.0462375532376512!GO:0016791;phosphoric monoester hydrolase activity;0.0480255188435391!GO:0046854;phosphoinositide phosphorylation;0.0481067111143207!GO:0046979;TAP2 binding;0.0488135371323815!GO:0046977;TAP binding;0.0488135371323815!GO:0046978;TAP1 binding;0.0488135371323815!GO:0051092;activation of NF-kappaB transcription factor;0.0488135371323815!GO:0004576;oligosaccharyl transferase activity;0.0488135371323815!GO:0006308;DNA catabolic process;0.0488135371323815!GO:0046834;lipid phosphorylation;0.0498315427321584!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0498315427321584!GO:0005083;small GTPase regulator activity;0.0498437894242262
|sample_id=11906
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=PDX1:2.76983119066;CDX1,2,4:2.45063693218;FOX{D1,D2}:2.43424202459;CREB1:2.36663663806;PAX3,7:2.36534311548;BPTF:2.02514076398;RUNX1..3:1.93018899916;ELF1,2,4:1.8845963436;RFX2..5_RFXANK_RFXAP:1.79682311583;ZBTB16:1.67538683272;HMX1:1.56699647459;LEF1_TCF7_TCF7L1,2:1.4993469272;ETS1,2:1.48308707497;TLX2:1.45524222209;FOXO1,3,4:1.43748513467;ATF5_CREB3:1.41564124926;DMAP1_NCOR{1,2}_SMARC:1.39535332567;ATF4:1.37441493425;IKZF2:1.34896854236;SPZ1:1.32133833743;FOX{F1,F2,J1}:1.23751201043;BREu{core}:1.2165495279;RFX1:1.16796615234;NKX6-1,2:1.16295152855;PBX1:1.14245457585;PAX6:1.11920492211;FOXN1:1.08161716315;AHR_ARNT_ARNT2:0.948594859614;PITX1..3:0.92589330193;SPI1:0.905037001171;RORA:0.859227965338;FOXP1:0.850052975304;ELK1,4_GABP{A,B1}:0.793578760013;ZEB1:0.793267417511;GATA6:0.782267636059;IRF1,2:0.740333047867;HIF1A:0.718360491024;JUN:0.708760624345;AIRE:0.680804535618;ATF2:0.676190331462;TGIF1:0.640135228854;NKX2-1,4:0.601657515813;SPIB:0.581798637835;YY1:0.565690542829;T:0.558465926805;HOX{A6,A7,B6,B7}:0.534318941021;PAX2:0.524780440775;SOX5:0.491194891238;SNAI1..3:0.486762089128;CRX:0.459128453076;NR5A1,2:0.385123632297;FOXD3:0.369053840929;CUX2:0.351773138976;ATF6:0.339383836995;TOPORS:0.328287944752;FOX{I1,J2}:0.313117313726;IRF7:0.300395828325;STAT1,3:0.284096900104;LMO2:0.268094144498;MYOD1:0.24419445992;NFIX:0.230030679269;POU1F1:0.214580306569;POU2F1..3:0.213847097084;SOX2:0.2078862489;NFE2L1:0.181230981192;NANOG:0.130404309989;PAX4:0.112938894864;NFIL3:0.109775925428;STAT5{A,B}:0.0582637954313;MAFB:0.0550203729799;VSX1,2:0.0346669697907;FOXA2:0.0128700998793;HBP1_HMGB_SSRP1_UBTF:0.00508231370969;EVI1:0.000779045542529;NRF1:-0.00566150081124;DBP:-0.0206430914301;NFKB1_REL_RELA:-0.0219271252322;SMAD1..7,9:-0.0773310055236;MYB:-0.0780571269038;TAL1_TCF{3,4,12}:-0.085093827802;ALX1:-0.0894148206276;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105593661082;HOXA9_MEIS1:-0.127721290995;EP300:-0.142391221217;NKX3-1:-0.16327243099;FOXQ1:-0.166772021989;POU6F1:-0.186079364325;SREBF1,2:-0.222335510474;HAND1,2:-0.227674446982;OCT4_SOX2{dimer}:-0.279700475108;HNF1A:-0.280399630153;NR6A1:-0.303270003689;FOXL1:-0.31484822803;PPARG:-0.360015754562;HNF4A_NR2F1,2:-0.377852586738;MYFfamily:-0.385176512278;GLI1..3:-0.428867219465;RREB1:-0.434409375058;PRRX1,2:-0.459236341253;HES1:-0.467391645549;NANOG{mouse}:-0.475438614843;NFATC1..3:-0.520216600663;ADNP_IRX_SIX_ZHX:-0.539845640539;ZNF143:-0.545108694322;GFI1B:-0.557150826436;TBX4,5:-0.585430850266;E2F1..5:-0.604321804689;MEF2{A,B,C,D}:-0.606161753251;NFY{A,B,C}:-0.607475120454;NHLH1,2:-0.610009590798;EGR1..3:-0.626824833865;AR:-0.633661116478;POU3F1..4:-0.636847295766;STAT2,4,6:-0.657744353514;CEBPA,B_DDIT3:-0.707117771582;FOSL2:-0.723287612922;HMGA1,2:-0.760148907526;RBPJ:-0.760434456615;MED-1{core}:-0.772771903356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.774277926537;FOS_FOS{B,L1}_JUN{B,D}:-0.779753465676;HLF:-0.793086848352;REST:-0.800607504973;NKX2-2,8:-0.811845649878;BACH2:-0.813108884315;ZNF384:-0.818640551395;PAX5:-0.857279186646;MZF1:-0.867339674129;RXRA_VDR{dimer}:-0.86819095641;GFI1:-0.898773899162;SOX{8,9,10}:-0.900961398372;ALX4:-0.903836353208;FOXP3:-0.934705150632;ZNF148:-0.935239492787;NKX2-3_NKX2-5:-0.93879959702;RXR{A,B,G}:-0.967814569823;FOXM1:-0.972130328903;NFE2:-0.989262641727;ZNF423:-1.00074555227;UFEwm:-1.00274236141;LHX3,4:-1.02265190817;ZFP161:-1.05760399668;GCM1,2:-1.09087092225;SRF:-1.11270835126;ZBTB6:-1.11289235434;HOX{A5,B5}:-1.11330811385;MTE{core}:-1.14316601717;ONECUT1,2:-1.15185224621;ZNF238:-1.15198940713;ARID5B:-1.15288688976;CDC5L:-1.15342182518;KLF4:-1.15582231787;SOX17:-1.1648264878;TP53:-1.18321771429;bHLH_family:-1.18894276992;GATA4:-1.19373790479;NR1H4:-1.19410011134;MTF1:-1.22807142914;TFAP4:-1.25085117234;GZF1:-1.26415579596;PRDM1:-1.32817673099;EN1,2:-1.3607079086;PATZ1:-1.37675020343;MYBL2:-1.38253450021;NR3C1:-1.41076600843;TFCP2:-1.46530374141;NFE2L2:-1.47678779628;XBP1:-1.48885557367;HIC1:-1.50494781819;HOX{A4,D4}:-1.51927630408;POU5F1:-1.53474597365;PAX8:-1.55740590447;ESR1:-1.59189366314;TEAD1:-1.59692714746;TEF:-1.60144125148;GTF2I:-1.61529430644;MAZ:-1.62762041486;EBF1:-1.64492101552;GTF2A1,2:-1.64987282384;XCPE1{core}:-1.67235933483;NKX3-2:-1.69348289463;TLX1..3_NFIC{dimer}:-1.71438104099;TFAP2B:-1.76128108733;ZIC1..3:-1.80909488298;ESRRA:-1.81368153932;TFDP1:-1.9199593927;PAX1,9:-1.95910249057;TBP:-1.97537542152;SP1:-2.02738623085;TFAP2{A,C}:-2.07571116447;HSF1,2:-2.64570675183;IKZF1:-2.75319095604
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11906-125F7;search_select_hide=table117:FF:11906-125F7
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25-CD45RA+ naive conventional T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13512
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number33-34
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005907
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13512 CAGE DRX008192 DRR009064
Accession ID Hg19

Library idBAMCTSS
CNhs13512 DRZ000489 DRZ001874
Accession ID Hg38

Library idBAMCTSS
CNhs13512 DRZ011839 DRZ013224
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.203
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.338
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.311
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.136
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.635
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.422
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.92
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.00212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.49
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.566
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.617
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.578
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.574
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0845
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.862
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.786
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.714
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.663
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.483
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.714
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.977
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Jaspar motifP-value
MA0002.22.2638e-4
MA0003.10.521
MA0004.10.847
MA0006.10.111
MA0007.10.735
MA0009.10.255
MA0014.10.854
MA0017.10.504
MA0018.21.67183e-4
MA0019.10.509
MA0024.10.3
MA0025.10.931
MA0027.10.652
MA0028.10.00268
MA0029.10.478
MA0030.10.176
MA0031.10.00361
MA0035.20.355
MA0038.10.0263
MA0039.20.448
MA0040.10.206
MA0041.10.24
MA0042.10.728
MA0043.10.343
MA0046.10.291
MA0047.20.242
MA0048.10.825
MA0050.10.00176
MA0051.10.111
MA0052.10.0326
MA0055.10.953
MA0057.10.673
MA0058.10.936
MA0059.10.424
MA0060.10.0353
MA0061.10.2
MA0062.23.10349e-11
MA0065.20.149
MA0066.10.666
MA0067.10.275
MA0068.10.31
MA0069.10.787
MA0070.10.397
MA0071.10.975
MA0072.10.984
MA0073.10.989
MA0074.10.507
MA0076.14.94123e-5
MA0077.10.0446
MA0078.10.88
MA0079.20.318
MA0080.23.11381e-9
MA0081.10.0971
MA0083.10.0134
MA0084.10.572
MA0087.10.415
MA0088.10.309
MA0090.10.0037
MA0091.10.984
MA0092.10.819
MA0093.10.951
MA0099.29.01207e-8
MA0100.10.664
MA0101.10.521
MA0102.20.41
MA0103.10.0648
MA0104.20.0842
MA0105.12.91278e-4
MA0106.10.117
MA0107.10.185
MA0108.22.42186e-12
MA0111.10.125
MA0112.20.316
MA0113.10.874
MA0114.10.766
MA0115.10.907
MA0116.10.00108
MA0117.10.374
MA0119.10.66
MA0122.10.797
MA0124.10.0958
MA0125.10.0615
MA0131.10.145
MA0135.10.0221
MA0136.14.45693e-17
MA0137.20.205
MA0138.20.926
MA0139.10.0526
MA0140.10.39
MA0141.10.743
MA0142.10.173
MA0143.10.295
MA0144.10.549
MA0145.10.156
MA0146.10.395
MA0147.10.0706
MA0148.10.329
MA0149.10.124
MA0150.10.0678
MA0152.18.90041e-4
MA0153.10.458
MA0154.10.114
MA0155.10.496
MA0156.12.25458e-14
MA0157.10.00228
MA0159.10.283
MA0160.10.884
MA0162.10.64
MA0163.16.69817e-8
MA0164.10.845
MA0258.10.223
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Novel motifP-value
10.19
100.00785
1000.47
1010.12
1020.702
1030.31
1040.736
1050.701
1060.591
1070.0635
1080.975
1090.164
110.148
1100.743
1110.316
1120.612
1130.181
1140.189
1150.227
1160.794
1170.00114
1180.248
1190.637
120.779
1200.733
1210.829
1220.734
1237.48709e-6
1240.524
1250.769
1260.96
1270.85
1280.919
1290.421
130.48
1300.315
1310.236
1320.951
1330.446
1340.572
1350.789
1360.663
1370.0475
1380.291
1390.0268
140.512
1400.0262
1410.433
1420.397
1430.0152
1440.737
1450.605
1460.436
1470.0568
1480.087
1490.708
150.185
1500.76
1510.439
1520.169
1530.708
1540.336
1550.0415
1560.992
1570.887
1580.00356
1590.872
160.594
1600.828
1610.387
1620.314
1630.61
1640.0404
1650.789
1660.75
1670.0473
1680.92
1690.835
170.826
180.931
190.204
20.545
200.488
210.341
220.576
230.533
240.596
250.124
260.45
270.349
280.69
290.0248
30.13
300.0962
310.777
320.111
330.269
340.423
350.0323
360.0211
370.306
380.919
390.229
40.776
400.71
410.229
420.113
430.289
440.72
450.38
460.255
470.0919
480.267
490.0404
50.452
500.483
510.691
520.443
530.4
540.931
550.222
560.722
570.389
580.117
590.773
60.838
600.517
610.0796
620.0646
630.703
640.318
650.982
660.594
670.857
680.541
690.977
70.378
700.00934
710.0482
720.183
730.855
740.41
750.00547
760.113
770.0807
780.372
790.821
80.722
800.0447
810.174
820.191
830.651
840.557
850.688
860.228
870.479
880.891
890.241
90.788
900.00721
910.384
920.393
930.468
940.152
950.422
960.349
970.443
980.0611
990.00278



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13512


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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