FF:11908-125F9: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	CD4+CD25+CD45RA- memory regulatory T cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13538
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	37-38
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005127

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13538		CAGE		DRX008186		DRR009058

Accession ID Hg19

Library id		BAM		CTSS
CNhs13538		DRZ000483		DRZ001868

Accession ID Hg38

Library id		BAM		CTSS
CNhs13538		DRZ011833		DRZ013218

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	1.053
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.135
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.113
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.188
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.319
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.372
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.118
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.319
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.657
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.433
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.842
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0809
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.104
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.104
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.419
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0472
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.6
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.536
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0517
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.56
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.569
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.236
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.624
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.668
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.704
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.104
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.54
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.527
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.446
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.704
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.115
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.949
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.188
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13538

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.51936e-6
MA0003.1	MA0003.1	0.741
MA0004.1	MA0004.1	0.867
MA0006.1	MA0006.1	0.229
MA0007.1	MA0007.1	0.814
MA0009.1	MA0009.1	0.0557
MA0014.1	MA0014.1	0.971
MA0017.1	MA0017.1	0.282
MA0018.2	MA0018.2	7.00442e-5
MA0019.1	MA0019.1	0.798
MA0024.1	MA0024.1	0.653
MA0025.1	MA0025.1	0.549
MA0027.1	MA0027.1	0.77
MA0028.1	MA0028.1	2.95516e-4
MA0029.1	MA0029.1	0.155
MA0030.1	MA0030.1	0.0448
MA0031.1	MA0031.1	0.00341
MA0035.2	MA0035.2	0.152
MA0038.1	MA0038.1	0.0654
MA0039.2	MA0039.2	0.738
MA0040.1	MA0040.1	0.64
MA0041.1	MA0041.1	0.46
MA0042.1	MA0042.1	0.632
MA0043.1	MA0043.1	0.125
MA0046.1	MA0046.1	0.186
MA0047.2	MA0047.2	0.0988
MA0048.1	MA0048.1	0.54
MA0050.1	MA0050.1	6.58335e-9
MA0051.1	MA0051.1	0.00129
MA0052.1	MA0052.1	0.00363
MA0055.1	MA0055.1	0.626
MA0057.1	MA0057.1	0.571
MA0058.1	MA0058.1	0.731
MA0059.1	MA0059.1	0.533
MA0060.1	MA0060.1	0.0549
MA0061.1	MA0061.1	0.01
MA0062.2	MA0062.2	2.44978e-14
MA0065.2	MA0065.2	0.153
MA0066.1	MA0066.1	0.143
MA0067.1	MA0067.1	0.03
MA0068.1	MA0068.1	0.114
MA0069.1	MA0069.1	0.89
MA0070.1	MA0070.1	0.58
MA0071.1	MA0071.1	0.981
MA0072.1	MA0072.1	0.175
MA0073.1	MA0073.1	0.943
MA0074.1	MA0074.1	0.377
MA0076.1	MA0076.1	2.78137e-6
MA0077.1	MA0077.1	0.0167
MA0078.1	MA0078.1	0.625
MA0079.2	MA0079.2	0.276
MA0080.2	MA0080.2	4.10713e-11
MA0081.1	MA0081.1	0.0327
MA0083.1	MA0083.1	0.045
MA0084.1	MA0084.1	0.41
MA0087.1	MA0087.1	0.537
MA0088.1	MA0088.1	0.387
MA0090.1	MA0090.1	1.09531e-4
MA0091.1	MA0091.1	0.654
MA0092.1	MA0092.1	0.944
MA0093.1	MA0093.1	0.949
MA0099.2	MA0099.2	0.0099
MA0100.1	MA0100.1	0.472
MA0101.1	MA0101.1	0.776
MA0102.2	MA0102.2	0.684
MA0103.1	MA0103.1	0.147
MA0104.2	MA0104.2	0.212
MA0105.1	MA0105.1	2.72254e-6
MA0106.1	MA0106.1	0.367
MA0107.1	MA0107.1	0.935
MA0108.2	MA0108.2	2.05801e-10
MA0111.1	MA0111.1	0.0937
MA0112.2	MA0112.2	0.272
MA0113.1	MA0113.1	0.626
MA0114.1	MA0114.1	0.453
MA0115.1	MA0115.1	0.576
MA0116.1	MA0116.1	4.75632e-5
MA0117.1	MA0117.1	0.153
MA0119.1	MA0119.1	0.969
MA0122.1	MA0122.1	0.631
MA0124.1	MA0124.1	0.364
MA0125.1	MA0125.1	0.282
MA0131.1	MA0131.1	0.241
MA0135.1	MA0135.1	0.272
MA0136.1	MA0136.1	8.58148e-22
MA0137.2	MA0137.2	0.859
MA0138.2	MA0138.2	0.334
MA0139.1	MA0139.1	0.0275
MA0140.1	MA0140.1	0.0833
MA0141.1	MA0141.1	0.531
MA0142.1	MA0142.1	0.389
MA0143.1	MA0143.1	0.506
MA0144.1	MA0144.1	0.885
MA0145.1	MA0145.1	0.511
MA0146.1	MA0146.1	0.66
MA0147.1	MA0147.1	0.179
MA0148.1	MA0148.1	0.417
MA0149.1	MA0149.1	0.11
MA0150.1	MA0150.1	0.862
MA0152.1	MA0152.1	0.0144
MA0153.1	MA0153.1	0.2
MA0154.1	MA0154.1	0.035
MA0155.1	MA0155.1	0.438
MA0156.1	MA0156.1	9.58504e-17
MA0157.1	MA0157.1	0.0022
MA0159.1	MA0159.1	0.217
MA0160.1	MA0160.1	0.982
MA0162.1	MA0162.1	0.789
MA0163.1	MA0163.1	1.45754e-7
MA0164.1	MA0164.1	0.628
MA0258.1	MA0258.1	0.284
MA0259.1	MA0259.1	0.302

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13538

Novel motif	Logo	P-value
1	1	0.194
10	10	0.00718
100	100	0.766
101	101	0.0728
102	102	0.889
103	103	0.297
104	104	0.889
105	105	0.432
106	106	0.551
107	107	0.03
108	108	0.733
109	109	0.192
11	11	0.154
110	110	0.694
111	111	0.318
112	112	0.462
113	113	0.232
114	114	0.265
115	115	0.372
116	116	0.55
117	117	0.00418
118	118	0.338
119	119	0.916
12	12	0.799
120	120	0.996
121	121	0.638
122	122	0.63
123	123	0.00101
124	124	0.321
125	125	0.94
126	126	0.434
127	127	0.742
128	128	0.851
129	129	0.985
13	13	0.549
130	130	0.307
131	131	0.786
132	132	0.329
133	133	0.696
134	134	0.733
135	135	0.641
136	136	0.896
137	137	0.0624
138	138	0.159
139	139	0.047
14	14	0.371
140	140	0.104
141	141	0.354
142	142	0.503
143	143	0.0061
144	144	0.982
145	145	0.511
146	146	0.652
147	147	0.053
148	148	0.0568
149	149	0.594
15	15	0.0983
150	150	0.797
151	151	0.569
152	152	0.255
153	153	0.653
154	154	0.561
155	155	0.017
156	156	0.524
157	157	0.311
158	158	0.00765
159	159	0.934
16	16	0.946
160	160	0.625
161	161	0.71
162	162	0.0532
163	163	0.74
164	164	0.0735
165	165	0.247
166	166	0.445
167	167	0.175
168	168	0.718
169	169	0.998
17	17	0.931
18	18	0.605
19	19	0.339
2	2	0.64
20	20	0.659
21	21	0.729
22	22	0.639
23	23	0.736
24	24	0.727
25	25	0.0531
26	26	0.271
27	27	0.416
28	28	0.478
29	29	0.0123
3	3	0.118
30	30	0.157
31	31	0.883
32	32	0.225
33	33	0.229
34	34	0.437
35	35	0.136
36	36	0.0256
37	37	0.204
38	38	0.987
39	39	0.352
4	4	0.801
40	40	0.566
41	41	0.137
42	42	0.0974
43	43	0.365
44	44	0.53
45	45	0.391
46	46	0.209
47	47	0.101
48	48	0.242
49	49	0.0828
5	5	0.333
50	50	0.441
51	51	0.64
52	52	0.363
53	53	0.452
54	54	0.872
55	55	0.627
56	56	0.837
57	57	0.59
58	58	0.0791
59	59	0.86
6	6	0.987
60	60	0.434
61	61	0.118
62	62	0.057
63	63	0.86
64	64	0.416
65	65	0.925
66	66	0.835
67	67	0.951
68	68	0.992
69	69	0.896
7	7	0.221
70	70	0.038
71	71	0.0302
72	72	0.0642
73	73	0.866
74	74	0.384
75	75	0.0243
76	76	0.159
77	77	0.102
78	78	0.272
79	79	0.829
8	8	0.967
80	80	0.029
81	81	0.282
82	82	0.0886
83	83	0.771
84	84	0.696
85	85	0.773
86	86	0.108
87	87	0.519
88	88	0.775
89	89	0.197
9	9	0.957
90	90	0.00969
91	91	0.489
92	92	0.31
93	93	0.561
94	94	0.118
95	95	0.132
96	96	0.122
97	97	0.338
98	98	0.0972
99	99	3.32198e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13538

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005127
+|accession_numbers=CAGE;DRX008186;DRR009058;DRZ000483;DRZ001868;DRZ011833;DRZ013218
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.49!307.36!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!2.13!165.46!PRDM1;;chr3:63953435..63953499,+!p1@ATXN7!2.02!103.99!ATXN7;;chr6:106546834..106546850,+!p4@PRDM1!1.83!66.35!PRDM1;;chr3:71355163..71355209,-!p5@FOXP1!1.82!88.82!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.80!61.47!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.79!61.20!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.76!IKZF1;;chr2:231090471..231090504,+!p2@SP140!1.75!55.24!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.74!53.35!KDM5D;;chr10:8096631..8096660,+!p1@GATA3!1.69!57.41!GATA3;;chr6:391743..391759,+!p1@IRF4!1.67!45.77!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.65!215.02!RORA;;chr20:56195474..56195506,-!p1@ZBP1!1.60!38.72!ZBP1;;chr14:75988771..75988826,+!p1@BATF!1.57!47.39!BATF;;chr8:60031619..60031676,-!p1@TOX!1.56!73.93!TOX;;chr19:54058073..54058088,+!p1@ZNF331!1.56!35.20!ZNF331;;chr17:37934365..37934387,-!p2@IKZF3!1.55!34.12!IKZF3;;chr2:192015750..192015793,-!p2@STAT4!1.54!44.95!STAT4;;chr2:192015701..192015743,-!p1@STAT4!1.53!44.41!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.49!AKNA;;chr19:54041669..54041697,+!p2@ZNF331!1.51!31.41!ZNF331;;chr6:106546786..106546802,+!p6@PRDM1!1.48!29.52!PRDM1;;chr17:37934204..37934241,-!p3@IKZF3!1.46!27.89!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.66!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.23!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.39!58.22!CREM;;chr19:16435625..16435682,+!p1@KLF2!1.38!708.15!KLF2;;chr4:109089901..109089930,-!p3@LEF1!1.38!22.75!LEF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!55.79!RFX3;;chr14:75988831..75988847,+!p2@BATF!1.36!21.94!BATF;;chr6:106546731..106546755,+!p5@PRDM1!1.34!21.12!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.32!55.51!ZNF101;;chr7:50343895..50343936,+!p5@IKZF1!1.32!20.04!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!507.22!TSC22D3;;chr10:8096772..8096787,+!p2@GATA3!1.30!22.48!GATA3;;chr2:214016254..214016282,-!p7@IKZF2!1.29!18.41!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.28!63.10!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.28!38.45!ZBTB25;;chr4:109088089..109088101,-!p11@LEF1!1.28!18.14!LEF1;;chr2:214015343..214015366,-!p3@IKZF2!1.28!17.87!IKZF2;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.74!NR4A2;;chr3:71542615..71542644,-!p12@FOXP1!1.26!17.06!FOXP1;;chr20:50159198..50159299,-!p1@NFATC2!1.24!23.83!NFATC2;;chr10:35416142..35416169,+!p3@CREM!1.23!41.70!CREM;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.71!LEF1;;chr19:36204309..36204335,+!p1@ZBTB32!1.22!15.44!ZBTB32;;chr5:133450365..133450444,+!p1@TCF7!1.21!68.51!TCF7;;chr10:35484090..35484104,+!p6@CREM!1.21!15.17!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.20!270.26!FOSB;;chr20:56195525..56195556,-!p2@ZBP1!1.20!14.89!ZBP1;;chr11:128392273..128392308,-!p2@ETS1!1.19!61.20!ETS1;;chr12:56418637..56418648,+!p9@IKZF4!1.17!13.81!IKZF4;;chr4:185395633..185395651,-!p2@IRF2!1.15!20.85!IRF2;;chr4:109088940..109089037,-!p4@LEF1!1.15!13.27!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!1.15!13.00!FOXP1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.60!ETS1;;chr6:12009042..12009092,+!p6@HIVEP1!1.14!16.52!HIVEP1;;chr17:37934280..37934299,-!p6@IKZF3!1.14!12.73!IKZF3;;chr17:38497662..38497713,+!p4@RARA!1.10!13.54!RARA;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.64!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.64!IKZF1;;chr10:63809077..63809089,+!p5@ARID5B!1.09!24.37!ARID5B;;chr19:19729477..19729542,-!p1@PBX4!1.09!24.37!PBX4;;chr2:97202991..97203043,+!p3@ARID5A!1.09!11.37!ARID5A;;chr11:128563948..128564003,+!p1@FLI1!1.08!132.96!FLI1;;chr11:67007548..67007610,+!p3@KDM2A!1.08!82.32!KDM2A;;chr7:64838786..64838809,+!p2@ZNF92!1.08!62.83!ZNF92;;chr1:45805693..45805718,+!p3@TOE1!1.08!24.10!TOE1;;chr19:12902289..12902307,+!p1@JUNB!1.07!2486.79!JUNB;;chr2:214013461..214013517,-!p6@IKZF2!1.07!10.83!IKZF2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.10!BACH2;;chr5:133451294..133451310,+!p2@TCF7!1.06!10.56!TCF7;;chr10:35485013..35485034,+!p15@CREM!1.06!10.56!CREM;;chr16:79634595..79634620,-!p2@MAF!1.05!18.96!MAF;;chr4:109088130..109088163,-!p13@LEF1!1.05!10.29!LEF1;;chr10:63809013..63809041,+!p3@ARID5B!1.03!54.43!ARID5B;;chr10:3824332..3824425,-!p4@KLF6!1.03!15.98!KLF6;;chr10:63809090..63809097,+!p7@ARID5B!1.03!13.81!ARID5B;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.75!HSF5;;chr13:41240717..41240735,-!p2@FOXO1!1.01!64.18!FOXO1;;chr8:60031563..60031574,-!p7@TOX!1.01!9.21!TOX;;chr7:77428066..77428132,+!p2@PHTF2!1.00!60.12!PHTF2;;chr16:79634624..79634642,-!p1@MAF!1.00!36.02!MAF;;chr9:3525867..3525902,-!p3@RFX3!0.99!30.87!RFX3;;chr9:102584262..102584276,+!p1@NR4A3!0.99!19.77!NR4A3;;chr13:74707894..74707947,-!p6@KLF12!0.99!9.75!KLF12;;chr4:109086281..109086319,-!p9@LEF1!0.99!8.67!LEF1;;chr21:36421147..36421193,-!p10@RUNX1!0.99!8.67!RUNX1;;chr7:21467674..21467727,+!p1@SP4!0.98!34.93!SP4;;chr11:67007611..67007622,+!p6@KDM2A!0.98!11.64!KDM2A;;chr14:65569101..65569119,-!p3@MAX!0.97!26.81!MAX;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.66!PRDM1;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11908-125F9
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
+|library_id=CNhs13538
+|library_id_phase_based=2:CNhs13538
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11908
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11908
 |name=CD4+CD25+CD45RA- memory regulatory T cells, donor3
 |namespace=
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13538,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 58: / Line 78: @@
 |rna_weight_ug=1.9541
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11908-125F9;search_select_hide=table117:FF:11908-125F9
 }}

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FF:11908-125F9: Difference between revisions

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Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0