FF:11913-125G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005773 | |||
|accession_numbers=CAGE;DRX008188;DRR009060;DRZ000485;DRZ001870;DRZ011835;DRZ013220 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.78!IKZF1;;chr10:8096631..8096660,+!p1@GATA3!1.70!58.87!GATA3;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.18!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.63!41.77!SP140;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.19!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.59!37.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.86!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.54!147.99!TCF7;;chr2:192015701..192015743,-!p1@STAT4!1.54!45.88!STAT4;;chr3:18486354..18486377,-!p2@SATB1!1.54!41.77!SATB1;;chr6:391743..391759,+!p1@IRF4!1.53!32.72!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.85!AKNA;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.46!HIC1;;chr8:60031619..60031676,-!p1@TOX!1.45!57.88!TOX;;chr4:109087445..109087463,-!p1@LEF1!1.44!26.80!LEF1;;chr5:133451294..133451310,+!p2@TCF7!1.44!26.31!TCF7;;chrY:21906594..21906622,-!p1@KDM5D!1.42!25.16!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.41!33.05!STAT4;;chr16:68119324..68119364,+!p1@NFATC3!1.39!103.43!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.39!23.35!GFI1;;chr14:75988771..75988826,+!p1@BATF!1.37!29.60!BATF;;chrX:49121165..49121179,-!p1@FOXP3!1.37!22.69!FOXP3;;chr1:25291475..25291511,-!p2@RUNX3!1.36!22.03!RUNX3;;chr7:50348268..50348366,+!p4@IKZF1!1.36!21.71!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.32!19.90!ATXN7;;chr3:71355163..71355209,-!p5@FOXP1!1.31!26.64!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.23!16.11!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.22!15.46!ZBP1;;chr2:231090471..231090504,+!p2@SP140!1.21!15.29!SP140;;chr4:109089901..109089930,-!p3@LEF1!1.20!14.80!LEF1;;chr14:99738138..99738163,-!p1@BCL11B!1.15!13.16!BCL11B;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.66!IKZF3;;chr19:19729477..19729542,-!p1@PBX4!1.13!26.80!PBX4;;chr4:109088940..109089037,-!p4@LEF1!1.11!11.84!LEF1;;chr1:25256756..25256774,-!p1@RUNX3!1.07!20.55!RUNX3;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.68!GATA3;;chr20:56195525..56195556,-!p2@ZBP1!1.04!10.03!ZBP1;;chr3:18480217..18480239,-!p3@SATB1!1.04!10.03!SATB1;;chr4:109090075..109090095,-!p2@LEF1!1.03!9.70!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.20!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.01!59.69!ELF1;;chr6:91006518..91006570,-!p1@BACH2!1.01!21.71!BACH2;;chr12:56415246..56415286,+!p2@IKZF4!1.01!9.21!IKZF4;;chr5:176738887..176738934,-!p1@MXD3!0.99!60.02!MXD3;;chr6:15401104..15401166,+!p5@JARID2!0.99!8.72!JARID2;;chr1:23857698..23857733,-!p1@E2F2!0.98!15.95!E2F2;;chr2:8822176..8822196,+!p1@ID2!0.97!1200.56!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.31!SATB1;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.39!HOXB2;;chr16:79634624..79634642,-!p1@MAF!0.96!33.22!MAF;;chr17:45810594..45810608,+!p1@TBX21!0.96!8.22!TBX21;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.21!SNAI3;;chr19:16435625..16435682,+!p1@KLF2!0.94!258.83!KLF2;;chr7:77428066..77428132,+!p2@PHTF2!0.94!52.13!PHTF2;;chr4:109088089..109088101,-!p11@LEF1!0.94!7.73!LEF1;;chr8:60031563..60031574,-!p7@TOX!0.93!7.56!TOX;;chr11:128392085..128392232,-!p1@ETS1!0.91!250.93!ETS1;;chr11:128563948..128564003,+!p1@FLI1!0.91!90.77!FLI1;;chrX:134477924..134477988,-!p1@ZNF75D!0.91!27.79!ZNF75D;;chr10:35484053..35484076,+!p1@CREM!0.90!17.76!CREM;;chr2:97202991..97203043,+!p3@ARID5A!0.89!6.74!ARID5A;;chr16:79634595..79634620,-!p2@MAF!0.88!12.50!MAF;;chr11:47236584..47236679,+!p1@DDB2!0.87!73.83!DDB2;;chr7:137620650..137620677,-!p3@CREB3L2!0.87!6.41!CREB3L2;;chr15:60884706..60884743,-!p1@RORA!0.86!33.87!RORA;;chr5:321810..321877,+!p1@AHRR!0.86!20.88!AHRR;;chr4:109088130..109088163,-!p13@LEF1!0.86!6.25!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!0.83!5.76!FOXP1;;chr1:3569072..3569093,+!p1@TP73!0.83!5.76!TP73;;chr5:131826457..131826514,-!p1@IRF1!0.82!234.65!IRF1;;chr3:71179699..71179744,-!p2@FOXP1!0.82!45.55!FOXP1;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.08!STAT5A;;chr2:148778973..148779035,+!p3@MBD5!0.82!15.46!MBD5;;chr11:128331703..128331717,-!p8@ETS1!0.82!5.59!ETS1;;chr2:231084659..231084721,-!p1@SP110!0.81!137.47!SP110;;chr2:214015111..214015179,-!p1@IKZF2!0.81!10.20!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.81!5.43!GFI1;;chr20:52226313..52226350,-!p3@ZNF217!0.81!5.43!ZNF217;;chr4:185395633..185395651,-!p2@IRF2!0.80!8.88!IRF2;;chr5:133451347..133451358,+!p3@TCF7!0.80!5.26!TCF7;;chr10:8097321..8097348,+!p4@GATA3!0.80!5.26!GATA3;;chr14:75988831..75988847,+!p2@BATF!0.80!5.26!BATF;;chr11:113930425..113930471,+!p1@ZBTB16!0.79!7.73!ZBTB16;;chr2:231090344..231090361,-!p3@SP110!0.79!5.10!SP110;;chr14:99737850..99737852,-!p3@BCL11B!0.79!5.10!BCL11B;;chr3:71007344..71007348,-!p6@FOXP1!0.77!21.38!FOXP1;;chr16:89787937..89787971,+!p1@ZNF276!0.77!13.48!ZNF276;;chr6:15249128..15249177,+!p4@JARID2!0.77!9.37!JARID2;;chr7:137620684..137620711,-!p4@CREB3L2!0.77!4.93!CREB3L2;;chr1:158979686..158979745,+!p1@IFI16!0.76!172.50!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!0.76!6.08!PRDM1;;chr9:20622444..20622468,-!p2@MLLT3!0.75!16.44!MLLT3;;chr20:44600199..44600219,-!p3@ZNF335!0.75!6.41!ZNF335;;chr16:88752861..88752884,-!p2@SNAI3!0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A2;;chr12:46123464..46123512,+!p1@ARID2!0.33!10.52!ARID2;;chr19:53073532..53073551,+!p1@ZNF701!0.33!8.06!ZNF701;;chr5:178450797..178450814,+!p1@ZNF879!0.33!4.44!ZNF879;;chr19:58951496..58951539,-!p1@ZNF132!0.33!3.95!ZNF132;;chr14:89628064..89628109,-!p4@FOXN3!0.33!3.29!FOXN3;;chr19:24097706..24097731,+!p2@ZNF726!0.33!2.96!ZNF726;;chr14:64970427..64970450,-!p5@ZBTB25!0.33!2.63!ZBTB25;;chr2:231084639..231084654,-!p2@SP110!0.33!2.47!SP110;;chr6:135502408..135502459,+!p2@MYB!0.33!1.48!MYB;;chr5:133450458..133450469,+!p4@TCF7!0.33!1.15!TCF7;;chr10:35416223..35416234,+!p12@CREM!0.33!1.15!CREM;;chr11:128392265..128392267,-!p10@ETS1!0.33!1.15!ETS1;;chr14:90085820..90085840,-!p6@FOXN3!0.33!1.15!FOXN3;;chr14:99639180..99639182,-!p7@BCL11B!0.33!1.15!BCL11B;;chr14:99738106..99738117,-!p9@BCL11B!0.33!1.15!BCL11B;;chr16:89789271..89789291,+!p5@ZNF276!0.33!1.15!ZNF276;;chr17:37934204..37934241,-!p3@IKZF3!0.33!1.15!IKZF3;;chr17:37934365..37934387,-!p2@IKZF3!0.33!1.15!IKZF3;;chr17:42295682..42295731,-!p17@UBTF!0.33!1.15!UBTF;;chr2:214016254..214016282,-!p7@IKZF2!0.33!1.15!IKZF2;;chr3:71542733..71542742,-!p81@FOXP1!0.33!1.15!FOXP1;;chr3:71542827..71542838,-!p53@FOXP1!0.33!1.15!FOXP1;;chr4:109087885..109087899,-!p23@LEF1!0.33!1.15!LEF1;;chr4:109088814..109088831,-!p18@LEF1!0.33!1.15!LEF1;;chr1:14057463..14057496,+!p4@PRDM2!0.33!1.15!PRDM2;;chr1:37947257..37947292,+!p4@ZC3H12A!0.33!1.15!ZC3H12A;;chr1:114302086..114302174,-!p1@PHTF1!0.32!34.20!PHTF1;;chr7:64254793..64254813,+!p1@ZNF138!0.32!21.21!ZNF138;;chr16:68573182..68573228,+!p1@ZFP90!0.32!17.92!ZFP90;;chr7:148959269..148959326,+!p1@ZNF783!0.32!14.96!ZNF783;;chr5:172483347..172483407,+!p1@C5orf41!0.32!13.81!CREBRF;;chr4:146859927..146860055,-!p1@ZNF827!0.32!10.69!ZNF827;;chr16:30406721..30406820,+!p1@ZNF48!0.32!9.70!ZNF48;;chr19:53238260..53238312,-!p1@ZNF611!0.32!5.92!ZNF611;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.32!4.93!ZNF321P;;chrX:129244885..129244926,-!p3@ELF4!0.32!3.95!ELF4;;chrX:76937934..76937974,-!p3@ATRX!0.32!2.14!ATRX;;chr3:150126440..150126455,+!p9@TSC22D2!0.32!2.14!TSC22D2;;chr8:60031762..60031803,-!p3@TOX!0.32!1.97!TOX;;chr19:45972701..45972774,+!p2@FOSB!0.32!1.81!FOSB;;chr14:58832207..58832210,+!p6@ARID4A!0.32!1.32!ARID4A;;chr2:220094514..220094599,+!p1@ANKZF1!0.31!53.77!ANKZF1;;chr16:29817841..29817865,+!p1@MAZ!0.31!39.14!MAZ;;chr1:67390665..67390698,+!p1@MIER1!0.31!25.16!MIER1;;chr17:40428359..40428462,-!p1@STAT5B!0.31!23.19!STAT5B;;chr19:37808778..37808827,+!p1@HKR1!0.31!20.06!HKR1;;chr19:37825540..37825588,+!p2@HKR1!0.31!12.17!HKR1;;chr16:29816957..29817031,+!p7@MAZ!0.31!7.56!MAZ;;chr19:37960240..37960299,+!p1@ZNF570!0.31!5.92!ZNF570;;chr9:2015306..2015323,+!p3@SMARCA2!0.31!4.11!SMARCA2;;chr17:36861675..36861697,+!p3@MLLT6!0.31!3.62!MLLT6;;chr1:23694697..23694756,-!p3@ZNF436!0.31!3.45!ZNF436;;chr5:43065197..43065244,+!p5@ZNF131!0.31!2.80!ZNF131;;chr2:231280954..231280965,+!p2@SP100!0.31!2.63!SP100;;chr12:46123273..46123329,+!p3@ARID2!0.31!2.47!ARID2;;chr7:104752306..104752335,+!p4@MLL5!0.31!1.81!MLL5;;chrX:76937858..76937877,-!p5@ATRX!0.31!1.81!ATRX;;chr9:99180662..99180690,-!p2@ZNF367!0.31!1.81!ZNF367;;chr7:92076714..92076729,+!p2@GATAD1!0.31!1.48!GATAD1;;chr11:85375237..85375277,-!p4@CREBZF!0.31!1.32!CREBZF;;chr3:14989138..14989151,+!p6@NR2C2!0.31!1.32!NR2C2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.30!194.20!ZFP36L2;;chr11:62369229..62369289,-!p2@MTA2!0.30!26.31!MTA2;;chr16:31724552..31724617,+!p1@ZNF720!0.30!24.83!ZNF720;;chr19:57702846..57702891,+!p1@ZNF264!0.30!17.76!ZNF264;;chr19:40562072..40562143,-!p1@ZNF780B!0.30!15.95!ZNF780B;;chr12:498695..498748,-!p2@KDM5A!0.30!11.18!KDM5A;;chr18:45456930..45456967,-!p2@SMAD2!0.30!9.54!SMAD2;;chr19:47615477..47615491,-!p3@ZC3H4!0.30!7.24!ZC3H4;;chr6:28092375..28092412,+!p1@ZSCAN16!0.30!6.91!ZSCAN16;;chr19:23869970..23869991,-!p1@ZNF675!0.30!6.25!ZNF675;;chr16:30569678..30569720,-!p1@ZNF764!0.30!5.76!ZNF764;;chr19:58111241..58111292,+!p1@ZNF530!0.30!5.43!ZNF530;;chrX:134478706..134478736,+!p1@ZNF449!0.30!5.26!ZNF449;;chr19:44809143..44809187,-!p1@ZNF235!0.30!4.77!ZNF235;;chr19:54041382..54041437,+!p3@ZNF331!0.30!4.44!ZNF331;;chr16:67596384..67596411,+!p3@CTCF!0.30!3.78!CTCF;;chr1:37940102..37940131,+!p2@ZC3H12A!0.30!2.96!ZC3H12A;;chr16:54320158..54320200,-!p5@IRX3!0.30!1.81!IRX3;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.30!1.64!ZNF700;;chr1:244219775..244219893,+!p2@ZNF238!0.30!1.64!ZNF238;;chrX:56258811..56258838,+!p2@KLF8!0.30!1.64!KLF8;;chr14:45722261..45722272,-!p5@MIS18BP1!0.30!1.32!MIS18BP1;;chr1:114258267..114258270,-!p5@PHTF1!0.30!1.32!PHTF1;;chr1:25291678..25291685,-!p8@RUNX3!0.30!0.99!RUNX3;;chr1:42384532..42384603,-!p2@HIVEP3!0.30!0.99!HIVEP3;;chr21:36421518..36421532,-!p11@RUNX1!0.30!0.99!RUNX1;;chrX:131623967..131623978,-!p11@MBNL3!0.30!0.99!MBNL3;;chr16:54320322..54320343,-!p7@IRX3!0.30!0.99!IRX3;;chr16:89789248..89789270,+!p8@ZNF276!0.30!0.99!ZNF276;;chr17:46655672..46655697,-!p3@HOXB4!0.30!0.99!HOXB4;;chr6:106547079..106547114,+!p9@PRDM1!0.30!0.99!PRDM1;;ch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| |expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.78!IKZF1;;chr10:8096631..8096660,+!p1@GATA3!1.70!58.87!GATA3;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.18!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.63!41.77!SP140;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.19!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.59!37.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.86!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.54!147.99!TCF7;;chr2:192015701..192015743,-!p1@STAT4!1.54!45.88!STAT4;;chr3:18486354..18486377,-!p2@SATB1!1.54!41.77!SATB1;;chr6:391743..391759,+!p1@IRF4!1.53!32.72!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.85!AKNA;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.46!HIC1;;chr8:60031619..60031676,-!p1@TOX!1.45!57.88!TOX;;chr4:109087445..109087463,-!p1@LEF1!1.44!26.80!LEF1;;chr5:133451294..133451310,+!p2@TCF7!1.44!26.31!TCF7;;chrY:21906594..21906622,-!p1@KDM5D!1.42!25.16!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.41!33.05!STAT4;;chr16:68119324..68119364,+!p1@NFATC3!1.39!103.43!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.39!23.35!GFI1;;chr14:75988771..75988826,+!p1@BATF!1.37!29.60!BATF;;chrX:49121165..49121179,-!p1@FOXP3!1.37!22.69!FOXP3;;chr1:25291475..25291511,-!p2@RUNX3!1.36!22.03!RUNX3;;chr7:50348268..50348366,+!p4@IKZF1!1.36!21.71!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.32!19.90!ATXN7;;chr3:71355163..71355209,-!p5@FOXP1!1.31!26.64!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.23!16.11!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.22!15.46!ZBP1;;chr2:231090471..231090504,+!p2@SP140!1.21!15.29!SP140;;chr4:109089901..109089930,-!p3@LEF1!1.20!14.80!LEF1;;chr14:99738138..99738163,-!p1@BCL11B!1.15!13.16!BCL11B;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.66!IKZF3;;chr19:19729477..19729542,-!p1@PBX4!1.13!26.80!PBX4;;chr4:109088940..109089037,-!p4@LEF1!1.11!11.84!LEF1;;chr1:25256756..25256774,-!p1@RUNX3!1.07!20.55!RUNX3;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.68!GATA3;;chr20:56195525..56195556,-!p2@ZBP1!1.04!10.03!ZBP1;;chr3:18480217..18480239,-!p3@SATB1!1.04!10.03!SATB1;;chr4:109090075..109090095,-!p2@LEF1!1.03!9.70!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.20!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.01!59.69!ELF1;;chr6:91006518..91006570,-!p1@BACH2!1.01!21.71!BACH2;;chr12:56415246..56415286,+!p2@IKZF4!1.01!9.21!IKZF4;;chr5:176738887..176738934,-!p1@MXD3!0.99!60.02!MXD3;;chr6:15401104..15401166,+!p5@JARID2!0.99!8.72!JARID2;;chr1:23857698..23857733,-!p1@E2F2!0.98!15.95!E2F2;;chr2:8822176..8822196,+!p1@ID2!0.97!1200.56!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.31!SATB1;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.39!HOXB2;;chr16:79634624..79634642,-!p1@MAF!0.96!33.22!MAF;;chr17:45810594..45810608,+!p1@TBX21!0.96!8.22!TBX21;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.21!SNAI3;;chr19:16435625..16435682,+!p1@KLF2!0.94!258.83!KLF2;;chr7:77428066..77428132,+!p2@PHTF2!0.94!52.13!PHTF2;;chr4:109088089..109088101,-!p11@LEF1!0.94!7.73!LEF1;;chr8:60031563..60031574,-!p7@TOX!0.93!7.56!TOX;;chr11:128392085..128392232,-!p1@ETS1!0.91!250.93!ETS1;;chr11:128563948..128564003,+!p1@FLI1!0.91!90.77!FLI1;;chrX:134477924..134477988,-!p1@ZNF75D!0.91!27.79!ZNF75D;;chr10:35484053..35484076,+!p1@CREM!0.90!17.76!CREM;;chr2:97202991..97203043,+!p3@ARID5A!0.89!6.74!ARID5A;;chr16:79634595..79634620,-!p2@MAF!0.88!12.50!MAF;;chr11:47236584..47236679,+!p1@DDB2!0.87!73.83!DDB2;;chr7:137620650..137620677,-!p3@CREB3L2!0.87!6.41!CREB3L2;;chr15:60884706..60884743,-!p1@RORA!0.86!33.87!RORA;;chr5:321810..321877,+!p1@AHRR!0.86!20.88!AHRR;;chr4:109088130..109088163,-!p13@LEF1!0.86!6.25!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!0.83!5.76!FOXP1;;chr1:3569072..3569093,+!p1@TP73!0.83!5.76!TP73;;chr5:131826457..131826514,-!p1@IRF1!0.82!234.65!IRF1;;chr3:71179699..71179744,-!p2@FOXP1!0.82!45.55!FOXP1;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.08!STAT5A;;chr2:148778973..148779035,+!p3@MBD5!0.82!15.46!MBD5;;chr11:128331703..128331717,-!p8@ETS1!0.82!5.59!ETS1;;chr2:231084659..231084721,-!p1@SP110!0.81!137.47!SP110;;chr2:214015111..214015179,-!p1@IKZF2!0.81!10.20!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.81!5.43!GFI1;;chr20:52226313..52226350,-!p3@ZNF217!0.81!5.43!ZNF217;;chr4:185395633..185395651,-!p2@IRF2!0.80!8.88!IRF2;;chr5:133451347..133451358,+!p3@TCF7!0.80!5.26!TCF7;;chr10:8097321..8097348,+!p4@GATA3!0.80!5.26!GATA3;;chr14:75988831..75988847,+!p2@BATF!0.80!5.26!BATF;;chr11:113930425..113930471,+!p1@ZBTB16!0.79!7.73!ZBTB16;;chr2:231090344..231090361,-!p3@SP110!0.79!5.10!SP110;;chr14:99737850..99737852,-!p3@BCL11B!0.79!5.10!BCL11B;;chr3:71007344..71007348,-!p6@FOXP1!0.77!21.38!FOXP1;;chr16:89787937..89787971,+!p1@ZNF276!0.77!13.48!ZNF276;;chr6:15249128..15249177,+!p4@JARID2!0.77!9.37!JARID2;;chr7:137620684..137620711,-!p4@CREB3L2!0.77!4.93!CREB3L2;;chr1:158979686..158979745,+!p1@IFI16!0.76!172.50!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!0.76!6.08!PRDM1;;chr9:20622444..20622468,-!p2@MLLT3!0.75!16.44!MLLT3;;chr20:44600199..44600219,-!p3@ZNF335!0.75!6.41!ZNF335;;chr16:88752861..88752884,-!p2@SNAI3!0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A2;;chr12:46123464..46123512,+!p1@ARID2!0.33!10.52!ARID2;;chr19:53073532..53073551,+!p1@ZNF701!0.33!8.06!ZNF701;;chr5:178450797..178450814,+!p1@ZNF879!0.33!4.44!ZNF879;;chr19:58951496..58951539,-!p1@ZNF132!0.33!3.95!ZNF132;;chr14:89628064..89628109,-!p4@FOXN3!0.33!3.29!FOXN3;;chr19:24097706..24097731,+!p2@ZNF726!0.33!2.96!ZNF726;;chr14:64970427..64970450,-!p5@ZBTB25!0.33!2.63!ZBTB25;;chr2:231084639..231084654,-!p2@SP110!0.33!2.47!SP110;;chr6:135502408..135502459,+!p2@MYB!0.33!1.48!MYB;;chr5:133450458..133450469,+!p4@TCF7!0.33!1.15!TCF7;;chr10:35416223..35416234,+!p12@CREM!0.33!1.15!CREM;;chr11:128392265..128392267,-!p10@ETS1!0.33!1.15!ETS1;;chr14:90085820..90085840,-!p6@FOXN3!0.33!1.15!FOXN3;;chr14:99639180..99639182,-!p7@BCL11B!0.33!1.15!BCL11B;;chr14:99738106..99738117,-!p9@BCL11B!0.33!1.15!BCL11B;;chr16:89789271..89789291,+!p5@ZNF276!0.33!1.15!ZNF276;;chr17:37934204..37934241,-!p3@IKZF3!0.33!1.15!IKZF3;;chr17:37934365..37934387,-!p2@IKZF3!0.33!1.15!IKZF3;;chr17:42295682..42295731,-!p17@UBTF!0.33!1.15!UBTF;;chr2:214016254..214016282,-!p7@IKZF2!0.33!1.15!IKZF2;;chr3:71542733..71542742,-!p81@FOXP1!0.33!1.15!FOXP1;;chr3:71542827..71542838,-!p53@FOXP1!0.33!1.15!FOXP1;;chr4:109087885..109087899,-!p23@LEF1!0.33!1.15!LEF1;;chr4:109088814..109088831,-!p18@LEF1!0.33!1.15!LEF1;;chr1:14057463..14057496,+!p4@PRDM2!0.33!1.15!PRDM2;;chr1:37947257..37947292,+!p4@ZC3H12A!0.33!1.15!ZC3H12A;;chr1:114302086..114302174,-!p1@PHTF1!0.32!34.20!PHTF1;;chr7:64254793..64254813,+!p1@ZNF138!0.32!21.21!ZNF138;;chr16:68573182..68573228,+!p1@ZFP90!0.32!17.92!ZFP90;;chr7:148959269..148959326,+!p1@ZNF783!0.32!14.96!ZNF783;;chr5:172483347..172483407,+!p1@C5orf41!0.32!13.81!CREBRF;;chr4:146859927..146860055,-!p1@ZNF827!0.32!10.69!ZNF827;;chr16:30406721..30406820,+!p1@ZNF48!0.32!9.70!ZNF48;;chr19:53238260..53238312,-!p1@ZNF611!0.32!5.92!ZNF611;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.32!4.93!ZNF321P;;chrX:129244885..129244926,-!p3@ELF4!0.32!3.95!ELF4;;chrX:76937934..76937974,-!p3@ATRX!0.32!2.14!ATRX;;chr3:150126440..150126455,+!p9@TSC22D2!0.32!2.14!TSC22D2;;chr8:60031762..60031803,-!p3@TOX!0.32!1.97!TOX;;chr19:45972701..45972774,+!p2@FOSB!0.32!1.81!FOSB;;chr14:58832207..58832210,+!p6@ARID4A!0.32!1.32!ARID4A;;chr2:220094514..220094599,+!p1@ANKZF1!0.31!53.77!ANKZF1;;chr16:29817841..29817865,+!p1@MAZ!0.31!39.14!MAZ;;chr1:67390665..67390698,+!p1@MIER1!0.31!25.16!MIER1;;chr17:40428359..40428462,-!p1@STAT5B!0.31!23.19!STAT5B;;chr19:37808778..37808827,+!p1@HKR1!0.31!20.06!HKR1;;chr19:37825540..37825588,+!p2@HKR1!0.31!12.17!HKR1;;chr16:29816957..29817031,+!p7@MAZ!0.31!7.56!MAZ;;chr19:37960240..37960299,+!p1@ZNF570!0.31!5.92!ZNF570;;chr9:2015306..2015323,+!p3@SMARCA2!0.31!4.11!SMARCA2;;chr17:36861675..36861697,+!p3@MLLT6!0.31!3.62!MLLT6;;chr1:23694697..23694756,-!p3@ZNF436!0.31!3.45!ZNF436;;chr5:43065197..43065244,+!p5@ZNF131!0.31!2.80!ZNF131;;chr2:231280954..231280965,+!p2@SP100!0.31!2.63!SP100;;chr12:46123273..46123329,+!p3@ARID2!0.31!2.47!ARID2;;chr7:104752306..104752335,+!p4@MLL5!0.31!1.81!MLL5;;chrX:76937858..76937877,-!p5@ATRX!0.31!1.81!ATRX;;chr9:99180662..99180690,-!p2@ZNF367!0.31!1.81!ZNF367;;chr7:92076714..92076729,+!p2@GATAD1!0.31!1.48!GATAD1;;chr11:85375237..85375277,-!p4@CREBZF!0.31!1.32!CREBZF;;chr3:14989138..14989151,+!p6@NR2C2!0.31!1.32!NR2C2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.30!194.20!ZFP36L2;;chr11:62369229..62369289,-!p2@MTA2!0.30!26.31!MTA2;;chr16:31724552..31724617,+!p1@ZNF720!0.30!24.83!ZNF720;;chr19:57702846..57702891,+!p1@ZNF264!0.30!17.76!ZNF264;;chr19:40562072..40562143,-!p1@ZNF780B!0.30!15.95!ZNF780B;;chr12:498695..498748,-!p2@KDM5A!0.30!11.18!KDM5A;;chr18:45456930..45456967,-!p2@SMAD2!0.30!9.54!SMAD2;;chr19:47615477..47615491,-!p3@ZC3H4!0.30!7.24!ZC3H4;;chr6:28092375..28092412,+!p1@ZSCAN16!0.30!6.91!ZSCAN16;;chr19:23869970..23869991,-!p1@ZNF675!0.30!6.25!ZNF675;;chr16:30569678..30569720,-!p1@ZNF764!0.30!5.76!ZNF764;;chr19:58111241..58111292,+!p1@ZNF530!0.30!5.43!ZNF530;;chrX:134478706..134478736,+!p1@ZNF449!0.30!5.26!ZNF449;;chr19:44809143..44809187,-!p1@ZNF235!0.30!4.77!ZNF235;;chr19:54041382..54041437,+!p3@ZNF331!0.30!4.44!ZNF331;;chr16:67596384..67596411,+!p3@CTCF!0.30!3.78!CTCF;;chr1:37940102..37940131,+!p2@ZC3H12A!0.30!2.96!ZC3H12A;;chr16:54320158..54320200,-!p5@IRX3!0.30!1.81!IRX3;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.30!1.64!ZNF700;;chr1:244219775..244219893,+!p2@ZNF238!0.30!1.64!ZNF238;;chrX:56258811..56258838,+!p2@KLF8!0.30!1.64!KLF8;;chr14:45722261..45722272,-!p5@MIS18BP1!0.30!1.32!MIS18BP1;;chr1:114258267..114258270,-!p5@PHTF1!0.30!1.32!PHTF1;;chr1:25291678..25291685,-!p8@RUNX3!0.30!0.99!RUNX3;;chr1:42384532..42384603,-!p2@HIVEP3!0.30!0.99!HIVEP3;;chr21:36421518..36421532,-!p11@RUNX1!0.30!0.99!RUNX1;;chrX:131623967..131623978,-!p11@MBNL3!0.30!0.99!MBNL3;;chr16:54320322..54320343,-!p7@IRX3!0.30!0.99!IRX3;;chr16:89789248..89789270,+!p8@ZNF276!0.30!0.99!ZNF276;;chr17:46655672..46655697,-!p3@HOXB4!0.30!0.99!HOXB4;;chr6:106547079..106547114,+!p9@PRDM1!0.30!0.99!PRDM1;;ch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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11913-125G5 | |id=FF:11913-125G5 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13813 | |||
|library_id_phase_based=2:CNhs13813 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11913 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11913 | |||
|name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2 | |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2 | ||
|namespace= | |namespace= | ||
Line 47: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=125 | |rna_box=125 | ||
Line 61: | Line 78: | ||
|rna_weight_ug=5.5804 | |rna_weight_ug=5.5804 | ||
|sample_age=23 | |sample_age=23 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 100: | ||
|top_motifs=ZBTB16:3.10727220461;PITX1..3:2.66996826321;CDX1,2,4:2.6620889513;PAX4:2.60977452963;IKZF2:2.46732325499;FOXP1:2.34144733851;ELF1,2,4:1.99009667139;POU1F1:1.9030619941;NKX6-1,2:1.88535562006;TOPORS:1.82293051267;PAX3,7:1.74768734853;RUNX1..3:1.68684234724;PDX1:1.56219804393;DMAP1_NCOR{1,2}_SMARC:1.55772207776;NKX3-1:1.45952461453;POU2F1..3:1.3143056485;ETS1,2:1.23135203023;IRF1,2:1.17917743702;SPI1:1.15408308611;FOXO1,3,4:1.00224303707;HOX{A6,A7,B6,B7}:0.992650642948;E2F1..5:0.961772716116;AIRE:0.927696287924;RORA:0.911372137604;BREu{core}:0.89354322687;TLX2:0.881243628239;STAT1,3:0.866170369798;SPZ1:0.856454868264;ELK1,4_GABP{A,B1}:0.828613955131;PBX1:0.820390878807;NKX2-2,8:0.806835451066;SPIB:0.779603929926;IRF7:0.747373919341;NKX2-1,4:0.691069792627;ZNF384:0.664633448765;FOXD3:0.660954713357;GATA6:0.633515516509;NFY{A,B,C}:0.565782742813;CRX:0.553555475401;TGIF1:0.523513449759;BPTF:0.518551988109;FOX{F1,F2,J1}:0.517863727663;OCT4_SOX2{dimer}:0.488487431031;YY1:0.468933879686;FOX{I1,J2}:0.399362192998;NR5A1,2:0.395292299694;SOX5:0.294698811336;NANOG{mouse}:0.27010829014;FOX{D1,D2}:0.234222497801;MYB:0.218895688984;ZEB1:0.207581589089;POU3F1..4:0.204175779189;PAX8:0.169682438383;EVI1:0.169500437086;SNAI1..3:0.127872188084;FOXA2:0.106029618867;CUX2:0.0950157444467;STAT2,4,6:0.081862635367;ALX1:0.0796258903566;FOXM1:0.0506655249756;NFKB1_REL_RELA:0.0412825757287;LMO2:0.00936086777515;CREB1:0.00776021677036;NRF1:0.00107134341135;PAX2:-0.018084604621;FOXP3:-0.0220933449017;MYOD1:-0.0281950463242;LEF1_TCF7_TCF7L1,2:-0.0357820825167;ZNF143:-0.0462040804004;DBP:-0.0462808798625;ATF5_CREB3:-0.0481790318378;HNF4A_NR2F1,2:-0.0811689792954;T:-0.09728256728;FOXQ1:-0.100596539008;GFI1:-0.109061203958;SREBF1,2:-0.127315592626;RREB1:-0.127573428675;HOXA9_MEIS1:-0.167894471271;HES1:-0.168264166409;STAT5{A,B}:-0.181606357493;FOXN1:-0.195020992622;ATF6:-0.199486957102;NR1H4:-0.215575811724;PAX6:-0.239232656171;NFIL3:-0.24677461759;SMAD1..7,9:-0.273080721553;SOX{8,9,10}:-0.274402778946;GCM1,2:-0.282184553759;AHR_ARNT_ARNT2:-0.285327000342;ARID5B:-0.290099055759;NR3C1:-0.332591210666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341704771104;HAND1,2:-0.34519606282;RFX2..5_RFXANK_RFXAP:-0.359293435425;AR:-0.364058982932;HNF1A:-0.380230079223;RXRA_VDR{dimer}:-0.403623491341;TFDP1:-0.418043262751;PRRX1,2:-0.418434303776;CDC5L:-0.433639444013;UFEwm:-0.439556612108;NR6A1:-0.443056845179;NFE2L1:-0.444963246368;JUN:-0.453464279361;POU5F1:-0.464088805795;MYFfamily:-0.478449773052;ATF2:-0.48427094641;HMX1:-0.503809799172;GLI1..3:-0.511616111107;HMGA1,2:-0.513556609378;NKX2-3_NKX2-5:-0.55381011164;PPARG:-0.55522987306;TAL1_TCF{3,4,12}:-0.564708684498;VSX1,2:-0.598253854338;ATF4:-0.598906626368;PAX5:-0.602255131901;SRF:-0.607039679235;NFATC1..3:-0.623276774826;ZNF238:-0.637836375821;TP53:-0.639756701958;CEBPA,B_DDIT3:-0.660180397392;LHX3,4:-0.684338089827;HBP1_HMGB_SSRP1_UBTF:-0.690799403506;ZNF148:-0.708758316793;SOX2:-0.709786260608;TFAP4:-0.713046971316;BACH2:-0.723506398494;ONECUT1,2:-0.732823108158;XCPE1{core}:-0.757733705208;EP300:-0.781434718167;FOS_FOS{B,L1}_JUN{B,D}:-0.786548618189;KLF4:-0.789767250262;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.813140357239;MZF1:-0.817580918437;REST:-0.826017958396;ZFP161:-0.85681167996;TFCP2:-0.859555365556;NFE2:-0.868702271784;PRDM1:-0.87229624853;ADNP_IRX_SIX_ZHX:-0.875451534963;FOSL2:-0.901985302533;ESR1:-0.918090672125;MEF2{A,B,C,D}:-0.922455122612;ALX4:-0.952591133159;GATA4:-0.991583457751;FOXL1:-0.994118127058;ZBTB6:-1.00384934711;MTE{core}:-1.0202975266;EGR1..3:-1.02305580507;EBF1:-1.02811075954;NFE2L2:-1.0468973784;MED-1{core}:-1.0529237271;HOX{A4,D4}:-1.06084202741;RFX1:-1.0659979143;ZNF423:-1.08654348235;GZF1:-1.09993823182;HLF:-1.10240200401;POU6F1:-1.10435122955;RBPJ:-1.12357410837;NHLH1,2:-1.15455665075;MYBL2:-1.17522916921;MTF1:-1.20039135168;PAX1,9:-1.20231610009;NANOG:-1.20615477456;SOX17:-1.2066693304;TEF:-1.21578937175;HIC1:-1.22139073672;bHLH_family:-1.22556944046;HIF1A:-1.28050359024;MAZ:-1.28357833232;GFI1B:-1.31821823594;TFAP2B:-1.3256739098;HOX{A5,B5}:-1.33063525694;MAFB:-1.34112454738;HSF1,2:-1.34658156121;GTF2I:-1.36768639024;GTF2A1,2:-1.37503220836;NFIX:-1.40837829442;TBP:-1.43601700982;NKX3-2:-1.46964534205;ZIC1..3:-1.48420554546;PATZ1:-1.49128640191;TEAD1:-1.59779680547;EN1,2:-1.6445482097;TFAP2{A,C}:-1.69185189905;TBX4,5:-1.70626905754;IKZF1:-1.71312242476;RXR{A,B,G}:-1.78749843524;SP1:-1.80403464347;ESRRA:-1.88170398626;XBP1:-1.95923722161;TLX1..3_NFIC{dimer}:-2.14489914786 | |top_motifs=ZBTB16:3.10727220461;PITX1..3:2.66996826321;CDX1,2,4:2.6620889513;PAX4:2.60977452963;IKZF2:2.46732325499;FOXP1:2.34144733851;ELF1,2,4:1.99009667139;POU1F1:1.9030619941;NKX6-1,2:1.88535562006;TOPORS:1.82293051267;PAX3,7:1.74768734853;RUNX1..3:1.68684234724;PDX1:1.56219804393;DMAP1_NCOR{1,2}_SMARC:1.55772207776;NKX3-1:1.45952461453;POU2F1..3:1.3143056485;ETS1,2:1.23135203023;IRF1,2:1.17917743702;SPI1:1.15408308611;FOXO1,3,4:1.00224303707;HOX{A6,A7,B6,B7}:0.992650642948;E2F1..5:0.961772716116;AIRE:0.927696287924;RORA:0.911372137604;BREu{core}:0.89354322687;TLX2:0.881243628239;STAT1,3:0.866170369798;SPZ1:0.856454868264;ELK1,4_GABP{A,B1}:0.828613955131;PBX1:0.820390878807;NKX2-2,8:0.806835451066;SPIB:0.779603929926;IRF7:0.747373919341;NKX2-1,4:0.691069792627;ZNF384:0.664633448765;FOXD3:0.660954713357;GATA6:0.633515516509;NFY{A,B,C}:0.565782742813;CRX:0.553555475401;TGIF1:0.523513449759;BPTF:0.518551988109;FOX{F1,F2,J1}:0.517863727663;OCT4_SOX2{dimer}:0.488487431031;YY1:0.468933879686;FOX{I1,J2}:0.399362192998;NR5A1,2:0.395292299694;SOX5:0.294698811336;NANOG{mouse}:0.27010829014;FOX{D1,D2}:0.234222497801;MYB:0.218895688984;ZEB1:0.207581589089;POU3F1..4:0.204175779189;PAX8:0.169682438383;EVI1:0.169500437086;SNAI1..3:0.127872188084;FOXA2:0.106029618867;CUX2:0.0950157444467;STAT2,4,6:0.081862635367;ALX1:0.0796258903566;FOXM1:0.0506655249756;NFKB1_REL_RELA:0.0412825757287;LMO2:0.00936086777515;CREB1:0.00776021677036;NRF1:0.00107134341135;PAX2:-0.018084604621;FOXP3:-0.0220933449017;MYOD1:-0.0281950463242;LEF1_TCF7_TCF7L1,2:-0.0357820825167;ZNF143:-0.0462040804004;DBP:-0.0462808798625;ATF5_CREB3:-0.0481790318378;HNF4A_NR2F1,2:-0.0811689792954;T:-0.09728256728;FOXQ1:-0.100596539008;GFI1:-0.109061203958;SREBF1,2:-0.127315592626;RREB1:-0.127573428675;HOXA9_MEIS1:-0.167894471271;HES1:-0.168264166409;STAT5{A,B}:-0.181606357493;FOXN1:-0.195020992622;ATF6:-0.199486957102;NR1H4:-0.215575811724;PAX6:-0.239232656171;NFIL3:-0.24677461759;SMAD1..7,9:-0.273080721553;SOX{8,9,10}:-0.274402778946;GCM1,2:-0.282184553759;AHR_ARNT_ARNT2:-0.285327000342;ARID5B:-0.290099055759;NR3C1:-0.332591210666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341704771104;HAND1,2:-0.34519606282;RFX2..5_RFXANK_RFXAP:-0.359293435425;AR:-0.364058982932;HNF1A:-0.380230079223;RXRA_VDR{dimer}:-0.403623491341;TFDP1:-0.418043262751;PRRX1,2:-0.418434303776;CDC5L:-0.433639444013;UFEwm:-0.439556612108;NR6A1:-0.443056845179;NFE2L1:-0.444963246368;JUN:-0.453464279361;POU5F1:-0.464088805795;MYFfamily:-0.478449773052;ATF2:-0.48427094641;HMX1:-0.503809799172;GLI1..3:-0.511616111107;HMGA1,2:-0.513556609378;NKX2-3_NKX2-5:-0.55381011164;PPARG:-0.55522987306;TAL1_TCF{3,4,12}:-0.564708684498;VSX1,2:-0.598253854338;ATF4:-0.598906626368;PAX5:-0.602255131901;SRF:-0.607039679235;NFATC1..3:-0.623276774826;ZNF238:-0.637836375821;TP53:-0.639756701958;CEBPA,B_DDIT3:-0.660180397392;LHX3,4:-0.684338089827;HBP1_HMGB_SSRP1_UBTF:-0.690799403506;ZNF148:-0.708758316793;SOX2:-0.709786260608;TFAP4:-0.713046971316;BACH2:-0.723506398494;ONECUT1,2:-0.732823108158;XCPE1{core}:-0.757733705208;EP300:-0.781434718167;FOS_FOS{B,L1}_JUN{B,D}:-0.786548618189;KLF4:-0.789767250262;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.813140357239;MZF1:-0.817580918437;REST:-0.826017958396;ZFP161:-0.85681167996;TFCP2:-0.859555365556;NFE2:-0.868702271784;PRDM1:-0.87229624853;ADNP_IRX_SIX_ZHX:-0.875451534963;FOSL2:-0.901985302533;ESR1:-0.918090672125;MEF2{A,B,C,D}:-0.922455122612;ALX4:-0.952591133159;GATA4:-0.991583457751;FOXL1:-0.994118127058;ZBTB6:-1.00384934711;MTE{core}:-1.0202975266;EGR1..3:-1.02305580507;EBF1:-1.02811075954;NFE2L2:-1.0468973784;MED-1{core}:-1.0529237271;HOX{A4,D4}:-1.06084202741;RFX1:-1.0659979143;ZNF423:-1.08654348235;GZF1:-1.09993823182;HLF:-1.10240200401;POU6F1:-1.10435122955;RBPJ:-1.12357410837;NHLH1,2:-1.15455665075;MYBL2:-1.17522916921;MTF1:-1.20039135168;PAX1,9:-1.20231610009;NANOG:-1.20615477456;SOX17:-1.2066693304;TEF:-1.21578937175;HIC1:-1.22139073672;bHLH_family:-1.22556944046;HIF1A:-1.28050359024;MAZ:-1.28357833232;GFI1B:-1.31821823594;TFAP2B:-1.3256739098;HOX{A5,B5}:-1.33063525694;MAFB:-1.34112454738;HSF1,2:-1.34658156121;GTF2I:-1.36768639024;GTF2A1,2:-1.37503220836;NFIX:-1.40837829442;TBP:-1.43601700982;NKX3-2:-1.46964534205;ZIC1..3:-1.48420554546;PATZ1:-1.49128640191;TEAD1:-1.59779680547;EN1,2:-1.6445482097;TFAP2{A,C}:-1.69185189905;TBX4,5:-1.70626905754;IKZF1:-1.71312242476;RXR{A,B,G}:-1.78749843524;SP1:-1.80403464347;ESRRA:-1.88170398626;XBP1:-1.95923722161;TLX1..3_NFIC{dimer}:-2.14489914786 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11913-125G5;search_select_hide=table117:FF:11913-125G5 | |||
}} | }} |
Latest revision as of 18:29, 4 June 2020
Name: | CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13813 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13813
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13813
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0707 |
10 | 10 | 0.00359 |
100 | 100 | 0.423 |
101 | 101 | 0.0518 |
102 | 102 | 0.571 |
103 | 103 | 0.775 |
104 | 104 | 0.741 |
105 | 105 | 0.409 |
106 | 106 | 0.299 |
107 | 107 | 0.725 |
108 | 108 | 0.886 |
109 | 109 | 0.12 |
11 | 11 | 0.0323 |
110 | 110 | 0.336 |
111 | 111 | 0.222 |
112 | 112 | 0.274 |
113 | 113 | 0.29 |
114 | 114 | 0.413 |
115 | 115 | 0.155 |
116 | 116 | 0.342 |
117 | 117 | 0.0031 |
118 | 118 | 0.41 |
119 | 119 | 0.277 |
12 | 12 | 0.721 |
120 | 120 | 0.749 |
121 | 121 | 0.781 |
122 | 122 | 0.863 |
123 | 123 | 2.38734e-7 |
124 | 124 | 0.156 |
125 | 125 | 0.834 |
126 | 126 | 0.793 |
127 | 127 | 0.719 |
128 | 128 | 0.525 |
129 | 129 | 0.381 |
13 | 13 | 0.328 |
130 | 130 | 0.569 |
131 | 131 | 0.634 |
132 | 132 | 0.48 |
133 | 133 | 0.459 |
134 | 134 | 0.51 |
135 | 135 | 0.639 |
136 | 136 | 0.827 |
137 | 137 | 0.355 |
138 | 138 | 0.192 |
139 | 139 | 0.267 |
14 | 14 | 0.473 |
140 | 140 | 0.046 |
141 | 141 | 0.472 |
142 | 142 | 0.62 |
143 | 143 | 0.0133 |
144 | 144 | 0.362 |
145 | 145 | 0.106 |
146 | 146 | 0.831 |
147 | 147 | 0.187 |
148 | 148 | 0.059 |
149 | 149 | 0.884 |
15 | 15 | 0.233 |
150 | 150 | 0.487 |
151 | 151 | 0.582 |
152 | 152 | 0.175 |
153 | 153 | 0.991 |
154 | 154 | 0.389 |
155 | 155 | 0.0646 |
156 | 156 | 0.746 |
157 | 157 | 0.299 |
158 | 158 | 0.187 |
159 | 159 | 0.957 |
16 | 16 | 0.651 |
160 | 160 | 0.3 |
161 | 161 | 0.0627 |
162 | 162 | 0.503 |
163 | 163 | 0.241 |
164 | 164 | 0.0988 |
165 | 165 | 0.622 |
166 | 166 | 0.913 |
167 | 167 | 0.134 |
168 | 168 | 0.734 |
169 | 169 | 0.251 |
17 | 17 | 0.796 |
18 | 18 | 0.995 |
19 | 19 | 0.794 |
2 | 2 | 0.922 |
20 | 20 | 0.556 |
21 | 21 | 0.143 |
22 | 22 | 0.8 |
23 | 23 | 0.755 |
24 | 24 | 0.939 |
25 | 25 | 0.185 |
26 | 26 | 0.0342 |
27 | 27 | 0.324 |
28 | 28 | 0.661 |
29 | 29 | 0.0288 |
3 | 3 | 0.0342 |
30 | 30 | 0.0806 |
31 | 31 | 0.96 |
32 | 32 | 0.537 |
33 | 33 | 0.648 |
34 | 34 | 0.98 |
35 | 35 | 0.22 |
36 | 36 | 0.0229 |
37 | 37 | 0.309 |
38 | 38 | 0.537 |
39 | 39 | 0.597 |
4 | 4 | 0.945 |
40 | 40 | 0.348 |
41 | 41 | 0.878 |
42 | 42 | 0.0891 |
43 | 43 | 0.331 |
44 | 44 | 0.322 |
45 | 45 | 0.375 |
46 | 46 | 0.0767 |
47 | 47 | 0.018 |
48 | 48 | 0.0446 |
49 | 49 | 0.0638 |
5 | 5 | 0.777 |
50 | 50 | 0.953 |
51 | 51 | 0.686 |
52 | 52 | 0.436 |
53 | 53 | 0.0916 |
54 | 54 | 0.755 |
55 | 55 | 0.648 |
56 | 56 | 0.375 |
57 | 57 | 0.108 |
58 | 58 | 0.15 |
59 | 59 | 0.542 |
6 | 6 | 0.433 |
60 | 60 | 0.506 |
61 | 61 | 0.181 |
62 | 62 | 0.0776 |
63 | 63 | 0.338 |
64 | 64 | 0.109 |
65 | 65 | 0.726 |
66 | 66 | 0.746 |
67 | 67 | 0.608 |
68 | 68 | 0.939 |
69 | 69 | 0.928 |
7 | 7 | 0.363 |
70 | 70 | 0.124 |
71 | 71 | 0.0344 |
72 | 72 | 0.216 |
73 | 73 | 0.688 |
74 | 74 | 0.596 |
75 | 75 | 0.00928 |
76 | 76 | 0.214 |
77 | 77 | 0.723 |
78 | 78 | 0.0285 |
79 | 79 | 0.668 |
8 | 8 | 0.328 |
80 | 80 | 0.546 |
81 | 81 | 0.391 |
82 | 82 | 0.109 |
83 | 83 | 0.409 |
84 | 84 | 0.0366 |
85 | 85 | 0.919 |
86 | 86 | 0.206 |
87 | 87 | 0.993 |
88 | 88 | 0.841 |
89 | 89 | 0.315 |
9 | 9 | 0.862 |
90 | 90 | 0.0526 |
91 | 91 | 0.377 |
92 | 92 | 0.406 |
93 | 93 | 0.487 |
94 | 94 | 0.146 |
95 | 95 | 0.0436 |
96 | 96 | 0.2 |
97 | 97 | 0.19 |
98 | 98 | 0.346 |
99 | 99 | 0.452 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13813
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA