FF:11935-125I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005190 | |||
|accession_numbers=CAGE;DRX008386;DRR009258;DRZ000683;DRZ002068;DRZ012033;DRZ013418 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0200002 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11935-125I9 | |id=FF:11935-125I9 | ||
|is_a=FF:0000002;;FF:0000210;;FF:0200002 | |is_a=FF:0000002;;FF:0000210;;FF:0200002 | ||
|is_obsolete= | |||
|library_id=CNhs13818 | |||
|library_id_phase_based=2:CNhs13818 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11935 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11935 | |||
|name=Olfactory epithelial cells, donor3 | |name=Olfactory epithelial cells, donor3 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0967210908310724,0,-0.0649588568531666,0.0228659392364162,0,0,0,0.026904762721713,0,0,0,0,0,0,0,0.168234365485179,0,0.169705572894944,0,0,0,0,0,-0.0979578962680575,0,0,0.0794466855614852,0,0,0,0,0,0,0,0,0,0,0,0,-0.0666519490224381,0,0.0635969392553137,0,0,0,0,0,0,0.059902161629755,0,0,0,0,0,0.0645909788145112,0.119059432222927,0.0712420042425736,0,0,-0.097343627213097,0.0635969392553137,0,0,0,0,0,0,0,0.0635969392553137,0,0,0,0,0,0,0,0,0.12943596108135,0,0,0,0,0,0,0,0,0,0,-0.158750778940245,0.113929790992187,0.0317984696276569,0.411118488519849,0.0317984696276569,0.119059432222927,0.0701990142474723,0.038732551965361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0368438778109975,0.0635969392553137,0,0,-0.0233382116149433,-0.144907672841301,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0701990142474723,0,0.119059432222927,0,0.0635969392553137,0.0635969392553137,0,0,0,0.411118488519849,0,0,0.0420118264117094,0.0317984696276569,-0.474086218752008,-0.024455710300545,0.0317984696276569,0,-0.114643440534312,0,0,0,0.0317984696276569,0,0,0,0.168234365485179,0,0.456057910198242,0,-0.0504125515893149,0,0,0,0,0.155841047584335,0.131441678532988,0,0.257644078549196,0.392918443177047,0,0,0,0,0.295319249426781,0,-0.00182005157081376,0.30097345885469,0.215302321328588,0.148033951631355,0.0414965108533727,0,0,0,-0.206643143514573,0.110617448179246,0,0,0.187455919214815,-0.0751479808904855,0,0,1.28440846738988,0,0.0698215381900579,0.217443040803184,0,0.0190795915153969,0,0,0,0,0,0.0635969392553137,0,0,0.411118488519849,0,0,0.321858401763089,0.352880453532098,0.0162767195062214,0,0.0635969392553137,0.057702262391103,0.0555452752733483,0,0,0.228376913618914,0.0847875290476516,-0.00582197417401255,-0.439876632091524,0,-0.302389727009913,0.030805782999938,-0.389561842745144,-0.276410239161219,0.141788852326135,0.428489822383531,0,-0.059121727893606,-0.106403578902944,0.0600526404284128,0.103701283401224,0,-0.0542902018292102,0.111262990571656,0,0,0.0771187116685454,0.117010698942031,0,0,0.268121184275594,-0.0451555459180706,0.094495155787341,0.0102275467193613,0.0132699634788384,-0.496427770784734,-0.0395325284566706,0.108522410069588,0,0.48681944969718,0.0409364242361334,0.212403275340347,0,0.0668875462798625,0.0684178771030274,-0.131507624623403,0.00477365653782825,0.0222343987166095,0.144059014262979,0,-0.053962260243529,0.1487802212928,0,0,0.312269561931723,0,0,0,0,0.0635969392553137,-0.289666211315291,0.0264667199360168,0.150838065622562,0,-0.0770887718779655,0.0950853203953028,-0.135771788730901,0,-0.178630574473392,0.0870199400864684,0,-0.054185861587827,0,-0.133166339180878,0.629385236123108,0.028801937969038,0.227859581984373,-0.0584468268118252,-0.065157834850997,-0.0285116015392584,0.103663074961272,0.28012721092803,0.0223727671275358,0.980940243242968,0,0.109067754985049,0.37167975200314,0.0157662246838151,-0.238827011193143,0,0.15984049785164,0,0.057556744285203,0.0319029706392914,-0.214652031742136,0.241068673929065,-0.375692435325372,0.0666617334770787,0,-0.0863537793396888,0.0661990464363758,0,0,0,0,-0.0867701440793256,0.0231217413649167,0.0944592146057334,0.022524834942491,0,0.312695726813699,0,0,0.187299442675485,0.0170158388770738,0.0635969392553137,0.0181470332649873,-0.00753984463791546,0.12943596108135,0.136520803206528,0.0635969392553137,0,-0.0272287960593462,0,0.168234365485179,0.186756304289217,0.0760013116539467,-0.0927290544398098,-0.253326341486756,0,-0.108622809454255,0,0,0.0749641106762868,0,0.395130532741863,0,0,0.0178346326930356,-0.0923744460506029,0,0,0,0.158530586284321,0,0.0835353230699731,0,0,0.0317984696276569,0,0,0.436847481617391,-0.235773897993521,0.0635969392553137,0.168234365485179,0,0.119059432222927,0,0,0,-0.110803081130275,0,0,1.08585097614779,0.00014753591133676,-0.12301741567642,0.0317984696276569,0,0,0,0.331218657817928,0.233677347336671,0.168234365485179,-0.131862706497632,0,0,0,0,-0.0225440505338976,0,0,0,0.13800010729783,0.00586648220164973,0.187944787086094,0,0,0,0.077465103930722,0,0,0.411118488519849,0.0635969392553137,-0.16570246511143,0,0.119059432222927,0.554620228437272,0,0.150822967046729,0.0374775526760854,0,0.3106395874345,0.513202664223485,0.265416864459274,0,0,-0.197750192534574,0,0.212403275340347,0.108056613671839,0.0746615297131678,0,0.0753619504971357,0,0,0,0,0,0,0.312739757119068,0.0595297161114635,0,0,0,0,0,0,0.168234365485179,0,0,0,0.0994524160258128,0.120179218681837,0.168234365485179,0,0,0,0,0,0,0.266055045159768,0.254211977318801,0.0635969392553137,0,0.0977495754187535,0,0,0.0635969392553137,0,0,0.130237129912239,0,0,0,0.00721034299452241,0,0.0712420042425736,0,0,0,0,-0.0178650607824813,0,0,-0.0649588568531666,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.171664394016765,0,0.119059432222927,0,0,0,0,0,0.252220971312733,0,0.0635969392553137,0,0,1.88832586667059,0,0,0,0.184394316908117,0,-0.0967210908310724,0,0,0.252491876641462,0,0,0.02310002484934,0.0317984696276569,0,0,0,0.252491876641462,0,0,0,0,0,0,0.0595297161114635,0.481906318604321,0,0,0.61534169950694,0.00702289084743455,0.158349924494976,0.138819290757166,0,0,0.208448890456688,0,0,0,0,0,0,-0.031340424028527,0.168234365485179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0635969392553137,0,0,0,0,0,0,0.0448337101852589,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0270266224224007,0,0,0,0,0,0,0.06890044979123,0.102374346646595,0.0578295155021225,0,0,0.0635969392553137,0.090209778366182,0,0,0.049907191006637,0.119059432222927,0.222413314278373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169705572894944,0,0,0,0,0,0,0,0,0,0,0,0,0.106201637670174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174996859118496,0,0,0,0,0,0,0,0.0635969392553137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243010114974733,0,0,0,-0.044851864171865,0,0,0,0,0,0,0.0635969392553137,0,0,0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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10.83 | |rna_weight_ug=10.83 | ||
|sample_age=61 | |sample_age=61 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=caucasian | |sample_ethnicity=caucasian | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.77299946215795e-213!GO:0005737;cytoplasm;3.03330232062633e-186!GO:0043226;organelle;1.65066575282141e-164!GO:0043229;intracellular organelle;5.25334604846122e-164!GO:0043231;intracellular membrane-bound organelle;4.66876823299881e-160!GO:0043227;membrane-bound organelle;7.78044869864176e-160!GO:0044444;cytoplasmic part;3.01980049059269e-136!GO:0044422;organelle part;1.73580103162346e-115!GO:0044446;intracellular organelle part;4.56119864865255e-114!GO:0032991;macromolecular complex;1.57889842055494e-87!GO:0030529;ribonucleoprotein complex;7.59458865888266e-80!GO:0044238;primary metabolic process;1.53134561956876e-77!GO:0044237;cellular metabolic process;2.14192737247235e-77!GO:0005515;protein binding;6.32195656250049e-73!GO:0043170;macromolecule metabolic process;2.41522086437333e-72!GO:0005739;mitochondrion;5.47234088504384e-67!GO:0003723;RNA binding;3.06043128608127e-60!GO:0043233;organelle lumen;4.57160019459411e-60!GO:0031974;membrane-enclosed lumen;4.57160019459411e-60!GO:0019538;protein metabolic process;4.5980996268705e-54!GO:0044428;nuclear part;2.06439711611482e-53!GO:0005840;ribosome;2.14125861244461e-53!GO:0005634;nucleus;1.63543232174461e-52!GO:0006412;translation;1.34647902595885e-49!GO:0044260;cellular macromolecule metabolic process;1.33034778685956e-48!GO:0031090;organelle membrane;1.42704274531189e-47!GO:0044267;cellular protein metabolic process;1.42870853784663e-47!GO:0003735;structural constituent of ribosome;6.60361488613678e-47!GO:0043234;protein complex;1.1877462761819e-43!GO:0016043;cellular component organization and biogenesis;2.15523520576228e-43!GO:0044429;mitochondrial part;2.17715004566629e-43!GO:0033036;macromolecule localization;2.08473866954446e-41!GO:0015031;protein transport;7.30443454988915e-41!GO:0033279;ribosomal subunit;1.60885995535802e-40!GO:0009058;biosynthetic process;7.71609621911046e-40!GO:0008104;protein localization;1.11545352446503e-38!GO:0045184;establishment of protein localization;1.5388201537889e-38!GO:0005829;cytosol;1.64580537564525e-38!GO:0044249;cellular biosynthetic process;2.00142100333029e-38!GO:0009059;macromolecule biosynthetic process;4.32477124248511e-38!GO:0006396;RNA processing;9.82108528677423e-37!GO:0031967;organelle envelope;1.52658268473488e-36!GO:0031975;envelope;2.45250617558773e-36!GO:0043283;biopolymer metabolic process;8.64660913797213e-36!GO:0031981;nuclear lumen;7.78554801896994e-34!GO:0010467;gene expression;2.88017244651454e-33!GO:0046907;intracellular transport;3.0394899859009e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.23359292990663e-30!GO:0016071;mRNA metabolic process;2.39952456051496e-30!GO:0065003;macromolecular complex assembly;3.69907641848942e-29!GO:0008380;RNA splicing;1.35288415414665e-28!GO:0005740;mitochondrial envelope;4.40567343694256e-28!GO:0006886;intracellular protein transport;1.31279884440721e-27!GO:0031966;mitochondrial membrane;8.55060871666829e-27!GO:0019866;organelle inner membrane;1.34898953029095e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.59730425462995e-26!GO:0006397;mRNA processing;5.31855450291567e-26!GO:0022607;cellular component assembly;1.31686455249682e-25!GO:0005743;mitochondrial inner membrane;3.75051114113879e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.1086442352725e-25!GO:0043228;non-membrane-bound organelle;1.47177689010397e-24!GO:0043232;intracellular non-membrane-bound organelle;1.47177689010397e-24!GO:0044445;cytosolic part;2.84596418820294e-24!GO:0006996;organelle organization and biogenesis;1.22842329308966e-23!GO:0006119;oxidative phosphorylation;4.38199588739194e-22!GO:0005654;nucleoplasm;1.21974473972987e-21!GO:0015935;small ribosomal subunit;3.93351936725648e-21!GO:0044455;mitochondrial membrane part;1.03569428224909e-20!GO:0005681;spliceosome;1.7216144514635e-20!GO:0015934;large ribosomal subunit;1.84014598176257e-20!GO:0005783;endoplasmic reticulum;9.77595708670233e-20!GO:0051641;cellular localization;2.36874954229334e-19!GO:0051649;establishment of cellular localization;2.89579615613061e-19!GO:0006457;protein folding;3.2621093533229e-19!GO:0000166;nucleotide binding;5.77474674127861e-19!GO:0048770;pigment granule;1.12742787022166e-18!GO:0042470;melanosome;1.12742787022166e-18!GO:0012505;endomembrane system;2.41694112289588e-18!GO:0022618;protein-RNA complex assembly;4.16721850941854e-18!GO:0031980;mitochondrial lumen;4.36128071421148e-18!GO:0005759;mitochondrial matrix;4.36128071421148e-18!GO:0044451;nucleoplasm part;1.34405627638306e-17!GO:0008134;transcription factor binding;2.87751576861389e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.9224162551701e-17!GO:0005746;mitochondrial respiratory chain;3.09033285921746e-17!GO:0016874;ligase activity;3.58639797311235e-17!GO:0016462;pyrophosphatase activity;3.58639797311235e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.23754932449115e-17!GO:0006512;ubiquitin cycle;8.52385580180475e-17!GO:0051186;cofactor metabolic process;1.37523856249209e-16!GO:0017111;nucleoside-triphosphatase activity;1.478899559521e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.55809429496755e-16!GO:0005794;Golgi apparatus;2.84445824687747e-16!GO:0019941;modification-dependent protein catabolic process;4.61579099560403e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.61579099560403e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.42230749957389e-16!GO:0044257;cellular protein catabolic process;5.86368846251956e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.16675056281266e-16!GO:0044432;endoplasmic reticulum part;7.0198122672756e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.93522472772346e-16!GO:0006259;DNA metabolic process;1.4103806146715e-15!GO:0008135;translation factor activity, nucleic acid binding;1.61709580713645e-15!GO:0048193;Golgi vesicle transport;1.86523696336905e-15!GO:0003676;nucleic acid binding;3.04711171436405e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.44367642649143e-15!GO:0003954;NADH dehydrogenase activity;4.44367642649143e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.44367642649143e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.86622496401989e-15!GO:0043412;biopolymer modification;8.85754696635459e-15!GO:0044265;cellular macromolecule catabolic process;1.08468844036071e-14!GO:0043285;biopolymer catabolic process;1.17476646434711e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.47501590453094e-14!GO:0030163;protein catabolic process;3.41830094814815e-14!GO:0005761;mitochondrial ribosome;3.99400043931204e-14!GO:0000313;organellar ribosome;3.99400043931204e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.22405655276398e-14!GO:0006605;protein targeting;2.69088431043807e-13!GO:0006464;protein modification process;2.81654550763182e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.59900732231459e-13!GO:0045271;respiratory chain complex I;3.59900732231459e-13!GO:0005747;mitochondrial respiratory chain complex I;3.59900732231459e-13!GO:0016192;vesicle-mediated transport;3.69964836111731e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.16194812437333e-13!GO:0042773;ATP synthesis coupled electron transport;4.16194812437333e-13!GO:0006732;coenzyme metabolic process;4.61118039682477e-13!GO:0005730;nucleolus;4.7909333851004e-13!GO:0032553;ribonucleotide binding;5.11879498169346e-13!GO:0032555;purine ribonucleotide binding;5.11879498169346e-13!GO:0017076;purine nucleotide binding;7.14616756252454e-13!GO:0003743;translation initiation factor activity;7.28495035107833e-13!GO:0009057;macromolecule catabolic process;7.42518978702878e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.08039467661108e-12!GO:0009055;electron carrier activity;1.34448050425131e-12!GO:0051082;unfolded protein binding;1.90481852802561e-12!GO:0006413;translational initiation;2.08446028466327e-12!GO:0044248;cellular catabolic process;2.84492101437371e-12!GO:0007049;cell cycle;4.65531666505419e-12!GO:0016070;RNA metabolic process;7.29145436923281e-12!GO:0012501;programmed cell death;7.82714854007943e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.51683603975466e-11!GO:0003712;transcription cofactor activity;1.78410229423165e-11!GO:0006915;apoptosis;2.06472831789376e-11!GO:0005793;ER-Golgi intermediate compartment;3.85328870149999e-11!GO:0043687;post-translational protein modification;4.08216154955483e-11!GO:0005789;endoplasmic reticulum membrane;5.3536237432778e-11!GO:0008219;cell death;7.46281604968936e-11!GO:0016265;death;7.46281604968936e-11!GO:0008639;small protein conjugating enzyme activity;8.61447376558983e-11!GO:0004842;ubiquitin-protein ligase activity;1.53445977694665e-10!GO:0005524;ATP binding;1.54925751298686e-10!GO:0006446;regulation of translational initiation;2.00189691083982e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.00189691083982e-10!GO:0000375;RNA splicing, via transesterification reactions;2.00189691083982e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.00189691083982e-10!GO:0032559;adenyl ribonucleotide binding;2.54232346190947e-10!GO:0019787;small conjugating protein ligase activity;4.01240859073732e-10!GO:0030554;adenyl nucleotide binding;4.70733215404084e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.2470941859975e-10!GO:0008565;protein transporter activity;7.85396845577023e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.46036190912841e-10!GO:0006461;protein complex assembly;1.23809196227451e-09!GO:0009259;ribonucleotide metabolic process;1.27306264628019e-09!GO:0005635;nuclear envelope;1.88246167008076e-09!GO:0006974;response to DNA damage stimulus;3.13105407918347e-09!GO:0006163;purine nucleotide metabolic process;3.98315480730809e-09!GO:0031965;nuclear membrane;4.12680379276362e-09!GO:0009150;purine ribonucleotide metabolic process;4.63448531532356e-09!GO:0022402;cell cycle process;4.65426820825242e-09!GO:0048523;negative regulation of cellular process;5.46087562934793e-09!GO:0030120;vesicle coat;6.08445050471095e-09!GO:0030662;coated vesicle membrane;6.08445050471095e-09!GO:0016881;acid-amino acid ligase activity;6.88550336179991e-09!GO:0006366;transcription from RNA polymerase II promoter;7.65343938843147e-09!GO:0016604;nuclear body;7.66829917547404e-09!GO:0009260;ribonucleotide biosynthetic process;8.71717468054171e-09!GO:0006913;nucleocytoplasmic transport;8.78425071794378e-09!GO:0006164;purine nucleotide biosynthetic process;9.09784739629922e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.11823012497674e-09!GO:0009152;purine ribonucleotide biosynthetic process;9.96069691104771e-09!GO:0009060;aerobic respiration;1.56911686855326e-08!GO:0051169;nuclear transport;1.57964602173206e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.68312739804594e-08!GO:0051188;cofactor biosynthetic process;2.09182613859315e-08!GO:0045333;cellular respiration;2.11289817713583e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.12268605270805e-08!GO:0009141;nucleoside triphosphate metabolic process;2.59944936172712e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.71902031466673e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.71902031466673e-08!GO:0015986;ATP synthesis coupled proton transport;2.72767928284407e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.72767928284407e-08!GO:0048475;coated membrane;2.74824194418788e-08!GO:0030117;membrane coat;2.74824194418788e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.82809387004841e-08!GO:0044453;nuclear membrane part;2.87636056897081e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.88343220195208e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.88343220195208e-08!GO:0051246;regulation of protein metabolic process;3.56889554883977e-08!GO:0006399;tRNA metabolic process;3.82711411220807e-08!GO:0042623;ATPase activity, coupled;3.96578267807137e-08!GO:0042254;ribosome biogenesis and assembly;3.97958298104683e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.6585019165888e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.6585019165888e-08!GO:0016887;ATPase activity;5.08512563355716e-08!GO:0003924;GTPase activity;5.49215489339848e-08!GO:0005768;endosome;5.7369653793818e-08!GO:0051726;regulation of cell cycle;8.46530168035727e-08!GO:0000074;regulation of progression through cell cycle;8.6137476847501e-08!GO:0019829;cation-transporting ATPase activity;8.9948105158462e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.08324630140747e-08!GO:0048519;negative regulation of biological process;1.16549885461265e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.19031465359245e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.19031465359245e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.19031465359245e-07!GO:0009056;catabolic process;1.7070258395689e-07!GO:0017038;protein import;1.85657417438417e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.01732129063767e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.10707229356974e-07!GO:0050794;regulation of cellular process;2.18829619560392e-07!GO:0043038;amino acid activation;2.26661510030787e-07!GO:0006418;tRNA aminoacylation for protein translation;2.26661510030787e-07!GO:0043039;tRNA aminoacylation;2.26661510030787e-07!GO:0000278;mitotic cell cycle;2.34559638329887e-07!GO:0046034;ATP metabolic process;2.71939606926612e-07!GO:0042981;regulation of apoptosis;2.77104430302509e-07!GO:0016607;nuclear speck;3.02854288267995e-07!GO:0043067;regulation of programmed cell death;3.06484805840127e-07!GO:0006754;ATP biosynthetic process;4.01938876493688e-07!GO:0006753;nucleoside phosphate metabolic process;4.01938876493688e-07!GO:0044431;Golgi apparatus part;4.14690334231417e-07!GO:0006281;DNA repair;4.15280628383085e-07!GO:0016491;oxidoreductase activity;4.44827893784006e-07!GO:0032446;protein modification by small protein conjugation;5.61469998944766e-07!GO:0006916;anti-apoptosis;5.61747219773902e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.88071729119677e-07!GO:0005788;endoplasmic reticulum lumen;6.04657922489446e-07!GO:0006099;tricarboxylic acid cycle;6.33422341731316e-07!GO:0046356;acetyl-CoA catabolic process;6.33422341731316e-07!GO:0016567;protein ubiquitination;7.13511174609653e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.16261219643256e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.69101627004441e-07!GO:0051187;cofactor catabolic process;8.81579956552522e-07!GO:0043069;negative regulation of programmed cell death;9.21116642418187e-07!GO:0008026;ATP-dependent helicase activity;1.02525009648702e-06!GO:0009109;coenzyme catabolic process;1.04846343280964e-06!GO:0000151;ubiquitin ligase complex;1.06279816501032e-06!GO:0006793;phosphorus metabolic process;1.2206417566368e-06!GO:0006796;phosphate metabolic process;1.2206417566368e-06!GO:0043066;negative regulation of apoptosis;1.32369873981308e-06!GO:0005773;vacuole;1.35145911427297e-06!GO:0009108;coenzyme biosynthetic process;1.36352963219318e-06!GO:0004386;helicase activity;1.70274575445544e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.79488267656894e-06!GO:0006084;acetyl-CoA metabolic process;1.85748032259013e-06!GO:0005798;Golgi-associated vesicle;2.0753195123721e-06!GO:0008361;regulation of cell size;2.15007232565054e-06!GO:0045786;negative regulation of progression through cell cycle;2.30790322053029e-06!GO:0005643;nuclear pore;2.54402149101132e-06!GO:0065002;intracellular protein transport across a membrane;2.54846321685462e-06!GO:0015980;energy derivation by oxidation of organic compounds;2.92937960673903e-06!GO:0016049;cell growth;3.28924547388194e-06!GO:0045259;proton-transporting ATP synthase complex;3.36439042369322e-06!GO:0006752;group transfer coenzyme metabolic process;3.50073657417735e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.50166229965322e-06!GO:0009117;nucleotide metabolic process;3.57235255155888e-06!GO:0009719;response to endogenous stimulus;3.61600186072132e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.62096057465727e-06!GO:0007005;mitochondrion organization and biogenesis;3.67858235840479e-06!GO:0003713;transcription coactivator activity;4.27670565510337e-06!GO:0016310;phosphorylation;4.35501772121357e-06!GO:0006091;generation of precursor metabolites and energy;4.49115193135448e-06!GO:0006323;DNA packaging;4.53724081383507e-06!GO:0004298;threonine endopeptidase activity;6.06555569539995e-06!GO:0051276;chromosome organization and biogenesis;7.2238872567478e-06!GO:0043623;cellular protein complex assembly;9.45860520681305e-06!GO:0031988;membrane-bound vesicle;1.01096270921685e-05!GO:0016740;transferase activity;1.01096270921685e-05!GO:0051789;response to protein stimulus;1.01867969687776e-05!GO:0006986;response to unfolded protein;1.01867969687776e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.07505528771931e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.17285163944117e-05!GO:0005667;transcription factor complex;1.21878409419224e-05!GO:0000245;spliceosome assembly;1.23974574523422e-05!GO:0003714;transcription corepressor activity;1.24534508484553e-05!GO:0016564;transcription repressor activity;1.4124265643032e-05!GO:0008654;phospholipid biosynthetic process;1.64202863792796e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.6511795279019e-05!GO:0001558;regulation of cell growth;1.77874668374902e-05!GO:0046930;pore complex;1.84406980751193e-05!GO:0043566;structure-specific DNA binding;1.91278382910996e-05!GO:0065004;protein-DNA complex assembly;2.29970119298433e-05!GO:0031252;leading edge;2.37167025908476e-05!GO:0005762;mitochondrial large ribosomal subunit;2.52257768339195e-05!GO:0000315;organellar large ribosomal subunit;2.52257768339195e-05!GO:0006613;cotranslational protein targeting to membrane;2.60968061411544e-05!GO:0005770;late endosome;3.01944015759618e-05!GO:0000323;lytic vacuole;3.04893099117064e-05!GO:0005764;lysosome;3.04893099117064e-05!GO:0030133;transport vesicle;3.15348995922883e-05!GO:0016787;hydrolase activity;3.17783716474784e-05!GO:0044440;endosomal part;3.18742379998187e-05!GO:0010008;endosome membrane;3.18742379998187e-05!GO:0031982;vesicle;3.79935935863083e-05!GO:0005525;GTP binding;4.23423436751771e-05!GO:0051170;nuclear import;4.27971129486967e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.33278333606313e-05!GO:0005905;coated pit;4.44925823353248e-05!GO:0050657;nucleic acid transport;4.44925823353248e-05!GO:0051236;establishment of RNA localization;4.44925823353248e-05!GO:0050658;RNA transport;4.44925823353248e-05!GO:0031324;negative regulation of cellular metabolic process;4.54242875763204e-05!GO:0006403;RNA localization;4.57635494745226e-05!GO:0016563;transcription activator activity;4.74802625531537e-05!GO:0031410;cytoplasmic vesicle;5.34998690234142e-05!GO:0016859;cis-trans isomerase activity;5.39418380142134e-05!GO:0019843;rRNA binding;5.4978030435501e-05!GO:0006606;protein import into nucleus;5.7436877278117e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.22906102066852e-05!GO:0050789;regulation of biological process;6.29996607894185e-05!GO:0048522;positive regulation of cellular process;6.60872158950366e-05!GO:0000139;Golgi membrane;6.64058006999641e-05!GO:0003697;single-stranded DNA binding;7.25317778067943e-05!GO:0007243;protein kinase cascade;7.31302279524724e-05!GO:0006364;rRNA processing;7.48012223292852e-05!GO:0009892;negative regulation of metabolic process;8.60888652290306e-05!GO:0005769;early endosome;9.0463549481135e-05!GO:0008092;cytoskeletal protein binding;9.74413996097061e-05!GO:0016072;rRNA metabolic process;0.000100604047611439!GO:0000314;organellar small ribosomal subunit;0.000100604047611439!GO:0005763;mitochondrial small ribosomal subunit;0.000100604047611439!GO:0030867;rough endoplasmic reticulum membrane;0.000103060413876604!GO:0016853;isomerase activity;0.000105552775893051!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000116382904779213!GO:0030029;actin filament-based process;0.000118500657268265!GO:0003724;RNA helicase activity;0.000150714640194069!GO:0016568;chromatin modification;0.000158543781683243!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000162316165514592!GO:0005694;chromosome;0.000166643060692374!GO:0022403;cell cycle phase;0.000169001251499489!GO:0015630;microtubule cytoskeleton;0.000173292458195923!GO:0045454;cell redox homeostasis;0.0001816058663921!GO:0033116;ER-Golgi intermediate compartment membrane;0.000184240859585267!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000190443194029344!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000204091876298781!GO:0043021;ribonucleoprotein binding;0.000235207018220276!GO:0007010;cytoskeleton organization and biogenesis;0.000238856217391046!GO:0051427;hormone receptor binding;0.000253677214425073!GO:0030663;COPI coated vesicle membrane;0.000255210114611934!GO:0030126;COPI vesicle coat;0.000255210114611934!GO:0016779;nucleotidyltransferase activity;0.000283725340353806!GO:0019899;enzyme binding;0.000297812697418508!GO:0006260;DNA replication;0.000304682908047519!GO:0032561;guanyl ribonucleotide binding;0.000316407302883354!GO:0019001;guanyl nucleotide binding;0.000316407302883354!GO:0051329;interphase of mitotic cell cycle;0.000331393238494634!GO:0006333;chromatin assembly or disassembly;0.000353381424436083!GO:0019867;outer membrane;0.000364416957263028!GO:0005885;Arp2/3 protein complex;0.000375539918604293!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000375539918604293!GO:0015399;primary active transmembrane transporter activity;0.000375539918604293!GO:0051325;interphase;0.000377019314582735!GO:0000785;chromatin;0.000386803087094617!GO:0040008;regulation of growth;0.000386803087094617!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000397900090967471!GO:0005048;signal sequence binding;0.000417360465229555!GO:0046474;glycerophospholipid biosynthetic process;0.000420354833960507!GO:0035257;nuclear hormone receptor binding;0.000472586203512682!GO:0004576;oligosaccharyl transferase activity;0.000474024742223168!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000499941168967992!GO:0009967;positive regulation of signal transduction;0.00052673245611092!GO:0007050;cell cycle arrest;0.000557487458014095!GO:0051028;mRNA transport;0.000557487458014095!GO:0030132;clathrin coat of coated pit;0.000558808955963851!GO:0008250;oligosaccharyl transferase complex;0.000558808955963851!GO:0031968;organelle outer membrane;0.000565764097339176!GO:0000087;M phase of mitotic cell cycle;0.000580768455007343!GO:0005813;centrosome;0.000592010104845185!GO:0030137;COPI-coated vesicle;0.000615985240887354!GO:0043284;biopolymer biosynthetic process;0.00062455816604387!GO:0006612;protein targeting to membrane;0.000630641689695875!GO:0048471;perinuclear region of cytoplasm;0.000666078831713251!GO:0016481;negative regulation of transcription;0.000688592392389691!GO:0006650;glycerophospholipid metabolic process;0.000718994711750317!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000748811878003615!GO:0007067;mitosis;0.000784975017924598!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000808084791088803!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000829297248933151!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000849511846841129!GO:0044427;chromosomal part;0.000870924249626836!GO:0051128;regulation of cellular component organization and biogenesis;0.000956709350950173!GO:0016044;membrane organization and biogenesis;0.000990625713241845!GO:0044262;cellular carbohydrate metabolic process;0.000995692812099111!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001006341319083!GO:0030658;transport vesicle membrane;0.00102151681318645!GO:0006414;translational elongation;0.00107027622179971!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00117035166684228!GO:0009165;nucleotide biosynthetic process;0.00125442523195931!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0012625854340276!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0012625854340276!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0012625854340276!GO:0005815;microtubule organizing center;0.00126417781312643!GO:0051920;peroxiredoxin activity;0.00126900669720893!GO:0006891;intra-Golgi vesicle-mediated transport;0.00127410059480086!GO:0030118;clathrin coat;0.00135119459200227!GO:0046489;phosphoinositide biosynthetic process;0.00137540530848992!GO:0005791;rough endoplasmic reticulum;0.00142173777146756!GO:0051168;nuclear export;0.00170664893500201!GO:0051252;regulation of RNA metabolic process;0.00189238649485517!GO:0004177;aminopeptidase activity;0.00190362508743438!GO:0051301;cell division;0.00193481913625948!GO:0006892;post-Golgi vesicle-mediated transport;0.0019888316797063!GO:0008154;actin polymerization and/or depolymerization;0.00206424590053677!GO:0031072;heat shock protein binding;0.00208956987734002!GO:0003729;mRNA binding;0.00208956987734002!GO:0005741;mitochondrial outer membrane;0.00212312573919114!GO:0015992;proton transport;0.00222278680052452!GO:0016197;endosome transport;0.0022427805878103!GO:0018196;peptidyl-asparagine modification;0.00226614628230781!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00226614628230781!GO:0008186;RNA-dependent ATPase activity;0.00245786634379814!GO:0006818;hydrogen transport;0.00256395438757326!GO:0016363;nuclear matrix;0.00270928782688137!GO:0003690;double-stranded DNA binding;0.00270928782688137!GO:0051540;metal cluster binding;0.00270928782688137!GO:0051536;iron-sulfur cluster binding;0.00270928782688137!GO:0048500;signal recognition particle;0.00286384229848227!GO:0051287;NAD binding;0.00301921691676455!GO:0019222;regulation of metabolic process;0.00308808677984992!GO:0003899;DNA-directed RNA polymerase activity;0.00312063867179532!GO:0022890;inorganic cation transmembrane transporter activity;0.00322048793188162!GO:0030660;Golgi-associated vesicle membrane;0.00326725047940528!GO:0046483;heterocycle metabolic process;0.00331668287387915!GO:0043681;protein import into mitochondrion;0.00344500116733084!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00349294999367975!GO:0015002;heme-copper terminal oxidase activity;0.00349294999367975!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00349294999367975!GO:0004129;cytochrome-c oxidase activity;0.00349294999367975!GO:0005581;collagen;0.00352072343245562!GO:0048518;positive regulation of biological process;0.0037627264741955!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00377974756944358!GO:0043492;ATPase activity, coupled to movement of substances;0.00397695029727179!GO:0006383;transcription from RNA polymerase III promoter;0.00403237509282167!GO:0007006;mitochondrial membrane organization and biogenesis;0.00431452964752669!GO:0000049;tRNA binding;0.00433054174517971!GO:0030176;integral to endoplasmic reticulum membrane;0.00436816691983982!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00446404859018812!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00446404859018812!GO:0043488;regulation of mRNA stability;0.00471291500533709!GO:0043487;regulation of RNA stability;0.00471291500533709!GO:0017166;vinculin binding;0.00479058636947036!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00482753897140434!GO:0007264;small GTPase mediated signal transduction;0.00496637097068099!GO:0008022;protein C-terminus binding;0.0051978947861254!GO:0030384;phosphoinositide metabolic process;0.00525773281534581!GO:0046467;membrane lipid biosynthetic process;0.00547704245161377!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00556889319440071!GO:0006509;membrane protein ectodomain proteolysis;0.00559935167452353!GO:0033619;membrane protein proteolysis;0.00559935167452353!GO:0030125;clathrin vesicle coat;0.00559935167452353!GO:0030665;clathrin coated vesicle membrane;0.00559935167452353!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00565431844712464!GO:0006334;nucleosome assembly;0.00568316033169283!GO:0006839;mitochondrial transport;0.00573612417040268!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00580771090711568!GO:0033043;regulation of organelle organization and biogenesis;0.00580771090711568!GO:0030119;AP-type membrane coat adaptor complex;0.00589829380718314!GO:0003711;transcription elongation regulator activity;0.00592308488726165!GO:0030134;ER to Golgi transport vesicle;0.00614104920646513!GO:0006626;protein targeting to mitochondrion;0.00615905075829128!GO:0003746;translation elongation factor activity;0.00615905075829128!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00615905075829128!GO:0048468;cell development;0.00616431172623925!GO:0004004;ATP-dependent RNA helicase activity;0.00621455010994783!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00625718114137593!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00631315438423572!GO:0045047;protein targeting to ER;0.00631315438423572!GO:0004674;protein serine/threonine kinase activity;0.00638966051936197!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00640344046428648!GO:0030127;COPII vesicle coat;0.00645813363998876!GO:0012507;ER to Golgi transport vesicle membrane;0.00645813363998876!GO:0008139;nuclear localization sequence binding;0.00649142397657833!GO:0035258;steroid hormone receptor binding;0.00673075939054557!GO:0051087;chaperone binding;0.00683346509598595!GO:0045892;negative regulation of transcription, DNA-dependent;0.00684278332134708!GO:0042802;identical protein binding;0.0068852041464872!GO:0006497;protein amino acid lipidation;0.00697504707530585!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00713218178634147!GO:0000059;protein import into nucleus, docking;0.00727269267112476!GO:0019752;carboxylic acid metabolic process;0.0073356001316883!GO:0005869;dynactin complex;0.00741671934215422!GO:0006082;organic acid metabolic process;0.00745552390250199!GO:0045941;positive regulation of transcription;0.00746365065535365!GO:0030521;androgen receptor signaling pathway;0.00756522385650667!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00763211540899879!GO:0006352;transcription initiation;0.00763211540899879!GO:0007040;lysosome organization and biogenesis;0.00775454298410254!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00788762460933371!GO:0065009;regulation of a molecular function;0.00792382315715988!GO:0006289;nucleotide-excision repair;0.00821497029106502!GO:0030027;lamellipodium;0.0083035445081688!GO:0006402;mRNA catabolic process;0.00837284005082217!GO:0030041;actin filament polymerization;0.00842968800937465!GO:0000082;G1/S transition of mitotic cell cycle;0.00848494862890835!GO:0003684;damaged DNA binding;0.00870398894508883!GO:0045893;positive regulation of transcription, DNA-dependent;0.00898259718865962!GO:0030131;clathrin adaptor complex;0.00988150861065906!GO:0030880;RNA polymerase complex;0.0100158353123288!GO:0048487;beta-tubulin binding;0.0102613188312058!GO:0006740;NADPH regeneration;0.0109469262963391!GO:0006098;pentose-phosphate shunt;0.0109469262963391!GO:0008312;7S RNA binding;0.0110809559527178!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111438373449809!GO:0030659;cytoplasmic vesicle membrane;0.0117563725330211!GO:0031497;chromatin assembly;0.0117968904346653!GO:0006979;response to oxidative stress;0.0118687356306311!GO:0030833;regulation of actin filament polymerization;0.0119307726291328!GO:0003779;actin binding;0.0129704282686076!GO:0045639;positive regulation of myeloid cell differentiation;0.0130465538588846!GO:0050662;coenzyme binding;0.0134393821080885!GO:0006506;GPI anchor biosynthetic process;0.013639045035409!GO:0006595;polyamine metabolic process;0.013909000514009!GO:0015631;tubulin binding;0.0139275526577899!GO:0008180;signalosome;0.0139464821140898!GO:0031902;late endosome membrane;0.0140899776921119!GO:0043022;ribosome binding;0.0144795768374579!GO:0065007;biological regulation;0.0146304202586247!GO:0006778;porphyrin metabolic process;0.0146304202586247!GO:0033013;tetrapyrrole metabolic process;0.0146304202586247!GO:0050681;androgen receptor binding;0.0147589284072349!GO:0001726;ruffle;0.0151103250060996!GO:0042158;lipoprotein biosynthetic process;0.0151971326331498!GO:0031529;ruffle organization and biogenesis;0.015201507908871!GO:0005684;U2-dependent spliceosome;0.0152707833822438!GO:0008033;tRNA processing;0.0163038229937185!GO:0031625;ubiquitin protein ligase binding;0.0169446395231781!GO:0043433;negative regulation of transcription factor activity;0.0170651178033195!GO:0050811;GABA receptor binding;0.017185952472803!GO:0007033;vacuole organization and biogenesis;0.017185952472803!GO:0007030;Golgi organization and biogenesis;0.0172003222296498!GO:0005520;insulin-like growth factor binding;0.0172030081936654!GO:0030518;steroid hormone receptor signaling pathway;0.0172030081936654!GO:0006354;RNA elongation;0.0173213631170964!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0183117759753171!GO:0000428;DNA-directed RNA polymerase complex;0.0183117759753171!GO:0016272;prefoldin complex;0.0187424249755168!GO:0006505;GPI anchor metabolic process;0.0195973736463248!GO:0006118;electron transport;0.0200628546837009!GO:0005774;vacuolar membrane;0.0201373054833536!GO:0030032;lamellipodium biogenesis;0.0202213950276228!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0202344556727732!GO:0008610;lipid biosynthetic process;0.0203179371969799!GO:0000209;protein polyubiquitination;0.0217073055921365!GO:0000279;M phase;0.02212202223865!GO:0005862;muscle thin filament tropomyosin;0.022517571755697!GO:0045045;secretory pathway;0.0227641678774045!GO:0045936;negative regulation of phosphate metabolic process;0.0228984995572588!GO:0000096;sulfur amino acid metabolic process;0.0231992475242953!GO:0008047;enzyme activator activity;0.0235906893799124!GO:0043065;positive regulation of apoptosis;0.023713762492372!GO:0031901;early endosome membrane;0.0243635201342197!GO:0005637;nuclear inner membrane;0.0243668646361761!GO:0006520;amino acid metabolic process;0.0249574188746616!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0251244285378224!GO:0016301;kinase activity;0.0252922540663442!GO:0006779;porphyrin biosynthetic process;0.0259064250162579!GO:0033014;tetrapyrrole biosynthetic process;0.0259064250162579!GO:0007021;tubulin folding;0.0259802721564076!GO:0032535;regulation of cellular component size;0.0265381004389109!GO:0005801;cis-Golgi network;0.0266442689826817!GO:0044433;cytoplasmic vesicle part;0.0270017587181806!GO:0005819;spindle;0.0270511917002657!GO:0000339;RNA cap binding;0.0270924999710198!GO:0051348;negative regulation of transferase activity;0.0277583599606013!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0277583599606013!GO:0033673;negative regulation of kinase activity;0.0277868020487042!GO:0006469;negative regulation of protein kinase activity;0.0277868020487042!GO:0008286;insulin receptor signaling pathway;0.0278262969155681!GO:0016251;general RNA polymerase II transcription factor activity;0.0278695506902656!GO:0005832;chaperonin-containing T-complex;0.0281960786727207!GO:0043068;positive regulation of programmed cell death;0.0285419681342965!GO:0008652;amino acid biosynthetic process;0.0289826692588376!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.029288495591954!GO:0030832;regulation of actin filament length;0.029288495591954!GO:0035035;histone acetyltransferase binding;0.0299705034106038!GO:0008234;cysteine-type peptidase activity;0.0302268748438935!GO:0048144;fibroblast proliferation;0.0302268748438935!GO:0048145;regulation of fibroblast proliferation;0.0302268748438935!GO:0031272;regulation of pseudopodium formation;0.0302268748438935!GO:0031269;pseudopodium formation;0.0302268748438935!GO:0031344;regulation of cell projection organization and biogenesis;0.0302268748438935!GO:0031268;pseudopodium organization and biogenesis;0.0302268748438935!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0302268748438935!GO:0031274;positive regulation of pseudopodium formation;0.0302268748438935!GO:0006739;NADP metabolic process;0.0309227486546628!GO:0008632;apoptotic program;0.0317125408411332!GO:0016126;sterol biosynthetic process;0.0318018388820197!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0321194524595875!GO:0051052;regulation of DNA metabolic process;0.0323724201256439!GO:0007034;vacuolar transport;0.0328522257347077!GO:0042168;heme metabolic process;0.0329421561565528!GO:0006643;membrane lipid metabolic process;0.0329866833326277!GO:0051101;regulation of DNA binding;0.0339777123993034!GO:0033559;unsaturated fatty acid metabolic process;0.0343068665143281!GO:0006636;unsaturated fatty acid biosynthetic process;0.0343068665143281!GO:0006401;RNA catabolic process;0.0345707959577113!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0346240604255542!GO:0010257;NADH dehydrogenase complex assembly;0.0346240604255542!GO:0033108;mitochondrial respiratory chain complex assembly;0.0346240604255542!GO:0030100;regulation of endocytosis;0.0346240604255542!GO:0045334;clathrin-coated endocytic vesicle;0.0346586017929461!GO:0030508;thiol-disulfide exchange intermediate activity;0.0350083983634308!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0352702141077051!GO:0030145;manganese ion binding;0.0358001697313936!GO:0016408;C-acyltransferase activity;0.0358621069811783!GO:0005100;Rho GTPase activator activity;0.0359723138889513!GO:0030128;clathrin coat of endocytic vesicle;0.0360358872916151!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0360358872916151!GO:0030122;AP-2 adaptor complex;0.0360358872916151!GO:0048146;positive regulation of fibroblast proliferation;0.0361406569126825!GO:0006302;double-strand break repair;0.0365244744198672!GO:0006611;protein export from nucleus;0.0369066389197467!GO:0009116;nucleoside metabolic process;0.0369066389197467!GO:0008287;protein serine/threonine phosphatase complex;0.0369066389197467!GO:0044452;nucleolar part;0.0378661639695575!GO:0006607;NLS-bearing substrate import into nucleus;0.0378661639695575!GO:0009112;nucleobase metabolic process;0.0379677465520546!GO:0005096;GTPase activator activity;0.0386808444497243!GO:0000287;magnesium ion binding;0.0400317761005698!GO:0045792;negative regulation of cell size;0.0402997116233663!GO:0012506;vesicle membrane;0.0405038879730918!GO:0044420;extracellular matrix part;0.0408522998743966!GO:0051098;regulation of binding;0.0412453457828712!GO:0030911;TPR domain binding;0.0413731327152127!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0416445321998627!GO:0006417;regulation of translation;0.0417513952536867!GO:0004722;protein serine/threonine phosphatase activity;0.0417609396010309!GO:0032906;transforming growth factor-beta2 production;0.0418856590776845!GO:0032909;regulation of transforming growth factor-beta2 production;0.0418856590776845!GO:0001527;microfibril;0.0418947572385551!GO:0046519;sphingoid metabolic process;0.0419089080317017!GO:0044437;vacuolar part;0.0419480555539219!GO:0006897;endocytosis;0.0432560317737795!GO:0010324;membrane invagination;0.0432560317737795!GO:0030308;negative regulation of cell growth;0.0433439582269314!GO:0031124;mRNA 3'-end processing;0.0435735752554754!GO:0008320;protein transmembrane transporter activity;0.0440019192386257!GO:0006644;phospholipid metabolic process;0.0447029395664188!GO:0031371;ubiquitin conjugating enzyme complex;0.0447218062227872!GO:0046983;protein dimerization activity;0.0447988607232063!GO:0005938;cell cortex;0.0452638035221524!GO:0005669;transcription factor TFIID complex;0.0454409303165585!GO:0006672;ceramide metabolic process;0.0466349697135751!GO:0022884;macromolecule transmembrane transporter activity;0.0466511811999359!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0466511811999359!GO:0032984;macromolecular complex disassembly;0.0480871675132098!GO:0006984;ER-nuclear signaling pathway;0.0490057808001095!GO:0042326;negative regulation of phosphorylation;0.0497839556388663 | |||
|sample_id=11935 | |sample_id=11935 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=EVI1:2.89010064823;TAL1_TCF{3,4,12}:2.58998313741;NKX2-2,8:2.4419579415;HMGA1,2:2.37629333842;FOXL1:2.29946622156;ALX4:2.13945215053;AIRE:2.02034428938;UFEwm:1.87791472852;GLI1..3:1.77042560316;NKX3-1:1.6466353304;LHX3,4:1.59390546979;HES1:1.5699065107;TEAD1:1.48327348405;NR3C1:1.47430431108;KLF4:1.45640885299;ZNF384:1.44815383243;PRDM1:1.40342675064;MYBL2:1.36883382808;ESR1:1.25507661242;HIF1A:1.19352844026;FOXD3:1.14307712854;RXR{A,B,G}:1.12969066454;GZF1:1.12458666725;NR6A1:1.11817354225;GATA4:1.11624672553;TP53:0.970211055719;SRF:0.96105789287;HOX{A4,D4}:0.92217623692;NKX6-1,2:0.916598203604;PAX1,9:0.909325514821;ZBTB16:0.86272750281;PITX1..3:0.779081439822;ADNP_IRX_SIX_ZHX:0.741587776342;BPTF:0.736039009805;ZIC1..3:0.730623690106;CDX1,2,4:0.728754145813;RXRA_VDR{dimer}:0.726402721606;FOXP1:0.709374211395;TOPORS:0.701492392466;TFAP2{A,C}:0.664689589305;MAZ:0.65851485479;TLX1..3_NFIC{dimer}:0.644745110963;HMX1:0.641959883207;MAFB:0.631181665611;NKX2-1,4:0.601785702945;NFE2L1:0.59856115797;FOX{I1,J2}:0.586416362774;ZNF423:0.582014009566;PPARG:0.56682238946;SOX5:0.529288179003;GTF2I:0.527641583769;HSF1,2:0.519229979528;TFCP2:0.506127729038;NKX3-2:0.505769595002;PATZ1:0.502302028085;TEF:0.49858252655;HOX{A6,A7,B6,B7}:0.494193837593;IRF1,2:0.488131354187;NANOG{mouse}:0.453892353117;ZNF238:0.437883470804;XBP1:0.437646422371;NFATC1..3:0.402333092091;HOX{A5,B5}:0.399950663198;HAND1,2:0.397050744473;ATF6:0.393997782733;GTF2A1,2:0.385642626383;FOXO1,3,4:0.376508722597;EBF1:0.357613651631;CDC5L:0.349639961176;FOXA2:0.349024985895;DMAP1_NCOR{1,2}_SMARC:0.347944509682;MTE{core}:0.341646858343;TFAP4:0.313988467382;IKZF1:0.31286204446;TFAP2B:0.311174690727;XCPE1{core}:0.304202103155;SPZ1:0.281005573819;SOX17:0.259645496468;HIC1:0.249634185753;ZBTB6:0.24410882063;MTF1:0.23704191408;POU5F1:0.203256233376;TBX4,5:0.19209105348;EN1,2:0.161847521505;HLF:0.15640229351;RREB1:0.132782288859;NR1H4:0.128077070604;PDX1:0.0975049291733;ARID5B:0.0915374400964;ONECUT1,2:0.0789804411157;T:0.0709924501442;PAX5:0.0576697524295;AHR_ARNT_ARNT2:0.0560201496348;ZFP161:0.0515397500716;IKZF2:0.0513854225698;SMAD1..7,9:-0.021273924667;PAX4:-0.0317904553041;POU3F1..4:-0.0469277342682;FOX{D1,D2}:-0.0784373578217;NFIX:-0.0904783369248;YY1:-0.0913933775823;BACH2:-0.0913985231343;MZF1:-0.100515756389;DBP:-0.124022621191;NFE2L2:-0.125808658911;GCM1,2:-0.130212491002;CEBPA,B_DDIT3:-0.167799144218;ZNF143:-0.177148595661;ZNF148:-0.17739506542;FOXP3:-0.187060937342;SP1:-0.189884103669;GFI1B:-0.207292877105;NKX2-3_NKX2-5:-0.210167919192;MYFfamily:-0.217020895237;NFE2:-0.225896184871;MEF2{A,B,C,D}:-0.236697144138;TBP:-0.253338184174;STAT5{A,B}:-0.256880890873;MYB:-0.260142908348;ELK1,4_GABP{A,B1}:-0.288152627031;RBPJ:-0.301528165049;PAX6:-0.306182447584;TLX2:-0.32142100128;MED-1{core}:-0.334683145107;RFX1:-0.352408869219;IRF7:-0.35273939955;bHLH_family:-0.358452888361;REST:-0.358587532624;EGR1..3:-0.359351512104;FOS_FOS{B,L1}_JUN{B,D}:-0.360145021554;SNAI1..3:-0.370868465863;SREBF1,2:-0.378522531153;PAX2:-0.382115315952;NRF1:-0.383243649389;ATF2:-0.384115992904;STAT2,4,6:-0.387547611185;FOSL2:-0.425059551755;NFKB1_REL_RELA:-0.426359584271;HNF1A:-0.426372370494;FOXN1:-0.429437524048;HNF4A_NR2F1,2:-0.440841658327;PAX8:-0.455862930742;NHLH1,2:-0.494938533759;SOX2:-0.498452578035;FOXM1:-0.501017597336;POU6F1:-0.502978293809;AR:-0.503788193967;LMO2:-0.517053432904;PRRX1,2:-0.525844350876;ALX1:-0.576946478483;RUNX1..3:-0.580035868505;NFIL3:-0.597301613116;SPI1:-0.619946494387;OCT4_SOX2{dimer}:-0.624817728269;BREu{core}:-0.643497984288;RFX2..5_RFXANK_RFXAP:-0.667891238489;SPIB:-0.671308643545;ETS1,2:-0.680323384281;POU1F1:-0.683740979718;ATF4:-0.689891829133;ELF1,2,4:-0.703726824213;GFI1:-0.728301387702;CREB1:-0.754200655369;STAT1,3:-0.756746656255;LEF1_TCF7_TCF7L1,2:-0.777509473309;ZEB1:-0.79204459728;NR5A1,2:-0.792872561995;CUX2:-0.796091907124;CRX:-0.815593464944;TFDP1:-0.827657284537;E2F1..5:-0.840171033648;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.868809654826;ATF5_CREB3:-0.884683882039;TGIF1:-0.890537213995;POU2F1..3:-0.964254795145;PAX3,7:-1.00521333235;EP300:-1.01648577459;FOXQ1:-1.02120560387;FOX{F1,F2,J1}:-1.06846975139;MYOD1:-1.07480100742;HBP1_HMGB_SSRP1_UBTF:-1.11112616068;JUN:-1.19186720683;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21091672983;NFY{A,B,C}:-1.27746029599;NANOG:-1.28565925108;RORA:-1.30606533352;GATA6:-1.3465707098;HOXA9_MEIS1:-1.38430207561;PBX1:-1.4735313878;ESRRA:-1.49801059342;SOX{8,9,10}:-1.52596758732;VSX1,2:-1.58749889599 | |top_motifs=EVI1:2.89010064823;TAL1_TCF{3,4,12}:2.58998313741;NKX2-2,8:2.4419579415;HMGA1,2:2.37629333842;FOXL1:2.29946622156;ALX4:2.13945215053;AIRE:2.02034428938;UFEwm:1.87791472852;GLI1..3:1.77042560316;NKX3-1:1.6466353304;LHX3,4:1.59390546979;HES1:1.5699065107;TEAD1:1.48327348405;NR3C1:1.47430431108;KLF4:1.45640885299;ZNF384:1.44815383243;PRDM1:1.40342675064;MYBL2:1.36883382808;ESR1:1.25507661242;HIF1A:1.19352844026;FOXD3:1.14307712854;RXR{A,B,G}:1.12969066454;GZF1:1.12458666725;NR6A1:1.11817354225;GATA4:1.11624672553;TP53:0.970211055719;SRF:0.96105789287;HOX{A4,D4}:0.92217623692;NKX6-1,2:0.916598203604;PAX1,9:0.909325514821;ZBTB16:0.86272750281;PITX1..3:0.779081439822;ADNP_IRX_SIX_ZHX:0.741587776342;BPTF:0.736039009805;ZIC1..3:0.730623690106;CDX1,2,4:0.728754145813;RXRA_VDR{dimer}:0.726402721606;FOXP1:0.709374211395;TOPORS:0.701492392466;TFAP2{A,C}:0.664689589305;MAZ:0.65851485479;TLX1..3_NFIC{dimer}:0.644745110963;HMX1:0.641959883207;MAFB:0.631181665611;NKX2-1,4:0.601785702945;NFE2L1:0.59856115797;FOX{I1,J2}:0.586416362774;ZNF423:0.582014009566;PPARG:0.56682238946;SOX5:0.529288179003;GTF2I:0.527641583769;HSF1,2:0.519229979528;TFCP2:0.506127729038;NKX3-2:0.505769595002;PATZ1:0.502302028085;TEF:0.49858252655;HOX{A6,A7,B6,B7}:0.494193837593;IRF1,2:0.488131354187;NANOG{mouse}:0.453892353117;ZNF238:0.437883470804;XBP1:0.437646422371;NFATC1..3:0.402333092091;HOX{A5,B5}:0.399950663198;HAND1,2:0.397050744473;ATF6:0.393997782733;GTF2A1,2:0.385642626383;FOXO1,3,4:0.376508722597;EBF1:0.357613651631;CDC5L:0.349639961176;FOXA2:0.349024985895;DMAP1_NCOR{1,2}_SMARC:0.347944509682;MTE{core}:0.341646858343;TFAP4:0.313988467382;IKZF1:0.31286204446;TFAP2B:0.311174690727;XCPE1{core}:0.304202103155;SPZ1:0.281005573819;SOX17:0.259645496468;HIC1:0.249634185753;ZBTB6:0.24410882063;MTF1:0.23704191408;POU5F1:0.203256233376;TBX4,5:0.19209105348;EN1,2:0.161847521505;HLF:0.15640229351;RREB1:0.132782288859;NR1H4:0.128077070604;PDX1:0.0975049291733;ARID5B:0.0915374400964;ONECUT1,2:0.0789804411157;T:0.0709924501442;PAX5:0.0576697524295;AHR_ARNT_ARNT2:0.0560201496348;ZFP161:0.0515397500716;IKZF2:0.0513854225698;SMAD1..7,9:-0.021273924667;PAX4:-0.0317904553041;POU3F1..4:-0.0469277342682;FOX{D1,D2}:-0.0784373578217;NFIX:-0.0904783369248;YY1:-0.0913933775823;BACH2:-0.0913985231343;MZF1:-0.100515756389;DBP:-0.124022621191;NFE2L2:-0.125808658911;GCM1,2:-0.130212491002;CEBPA,B_DDIT3:-0.167799144218;ZNF143:-0.177148595661;ZNF148:-0.17739506542;FOXP3:-0.187060937342;SP1:-0.189884103669;GFI1B:-0.207292877105;NKX2-3_NKX2-5:-0.210167919192;MYFfamily:-0.217020895237;NFE2:-0.225896184871;MEF2{A,B,C,D}:-0.236697144138;TBP:-0.253338184174;STAT5{A,B}:-0.256880890873;MYB:-0.260142908348;ELK1,4_GABP{A,B1}:-0.288152627031;RBPJ:-0.301528165049;PAX6:-0.306182447584;TLX2:-0.32142100128;MED-1{core}:-0.334683145107;RFX1:-0.352408869219;IRF7:-0.35273939955;bHLH_family:-0.358452888361;REST:-0.358587532624;EGR1..3:-0.359351512104;FOS_FOS{B,L1}_JUN{B,D}:-0.360145021554;SNAI1..3:-0.370868465863;SREBF1,2:-0.378522531153;PAX2:-0.382115315952;NRF1:-0.383243649389;ATF2:-0.384115992904;STAT2,4,6:-0.387547611185;FOSL2:-0.425059551755;NFKB1_REL_RELA:-0.426359584271;HNF1A:-0.426372370494;FOXN1:-0.429437524048;HNF4A_NR2F1,2:-0.440841658327;PAX8:-0.455862930742;NHLH1,2:-0.494938533759;SOX2:-0.498452578035;FOXM1:-0.501017597336;POU6F1:-0.502978293809;AR:-0.503788193967;LMO2:-0.517053432904;PRRX1,2:-0.525844350876;ALX1:-0.576946478483;RUNX1..3:-0.580035868505;NFIL3:-0.597301613116;SPI1:-0.619946494387;OCT4_SOX2{dimer}:-0.624817728269;BREu{core}:-0.643497984288;RFX2..5_RFXANK_RFXAP:-0.667891238489;SPIB:-0.671308643545;ETS1,2:-0.680323384281;POU1F1:-0.683740979718;ATF4:-0.689891829133;ELF1,2,4:-0.703726824213;GFI1:-0.728301387702;CREB1:-0.754200655369;STAT1,3:-0.756746656255;LEF1_TCF7_TCF7L1,2:-0.777509473309;ZEB1:-0.79204459728;NR5A1,2:-0.792872561995;CUX2:-0.796091907124;CRX:-0.815593464944;TFDP1:-0.827657284537;E2F1..5:-0.840171033648;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.868809654826;ATF5_CREB3:-0.884683882039;TGIF1:-0.890537213995;POU2F1..3:-0.964254795145;PAX3,7:-1.00521333235;EP300:-1.01648577459;FOXQ1:-1.02120560387;FOX{F1,F2,J1}:-1.06846975139;MYOD1:-1.07480100742;HBP1_HMGB_SSRP1_UBTF:-1.11112616068;JUN:-1.19186720683;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21091672983;NFY{A,B,C}:-1.27746029599;NANOG:-1.28565925108;RORA:-1.30606533352;GATA6:-1.3465707098;HOXA9_MEIS1:-1.38430207561;PBX1:-1.4735313878;ESRRA:-1.49801059342;SOX{8,9,10}:-1.52596758732;VSX1,2:-1.58749889599 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11935-125I9;search_select_hide=table117:FF:11935-125I9 | |||
}} | }} | ||
Latest revision as of 18:30, 4 June 2020
| Name: | Olfactory epithelial cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13818 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13818
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13818
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.891 |
| 10 | 10 | 0.157 |
| 100 | 100 | 0.54 |
| 101 | 101 | 0.78 |
| 102 | 102 | 0.0841 |
| 103 | 103 | 0.779 |
| 104 | 104 | 0.867 |
| 105 | 105 | 0.175 |
| 106 | 106 | 0.152 |
| 107 | 107 | 0.014 |
| 108 | 108 | 0.263 |
| 109 | 109 | 0.399 |
| 11 | 11 | 0.458 |
| 110 | 110 | 0.433 |
| 111 | 111 | 0.902 |
| 112 | 112 | 0.471 |
| 113 | 113 | 0.787 |
| 114 | 114 | 0.136 |
| 115 | 115 | 0.322 |
| 116 | 116 | 0.0275 |
| 117 | 117 | 0.362 |
| 118 | 118 | 0.922 |
| 119 | 119 | 0.242 |
| 12 | 12 | 0.211 |
| 120 | 120 | 0.434 |
| 121 | 121 | 0.487 |
| 122 | 122 | 0.0795 |
| 123 | 123 | 0.739 |
| 124 | 124 | 0.31 |
| 125 | 125 | 0.519 |
| 126 | 126 | 0.392 |
| 127 | 127 | 0.959 |
| 128 | 128 | 0.394 |
| 129 | 129 | 0.343 |
| 13 | 13 | 0.856 |
| 130 | 130 | 0.188 |
| 131 | 131 | 0.552 |
| 132 | 132 | 0.0637 |
| 133 | 133 | 0.96 |
| 134 | 134 | 0.655 |
| 135 | 135 | 0.846 |
| 136 | 136 | 0.945 |
| 137 | 137 | 0.121 |
| 138 | 138 | 0.857 |
| 139 | 139 | 0.976 |
| 14 | 14 | 0.446 |
| 140 | 140 | 0.509 |
| 141 | 141 | 0.182 |
| 142 | 142 | 0.318 |
| 143 | 143 | 0.418 |
| 144 | 144 | 0.608 |
| 145 | 145 | 0.366 |
| 146 | 146 | 0.178 |
| 147 | 147 | 0.116 |
| 148 | 148 | 0.658 |
| 149 | 149 | 0.108 |
| 15 | 15 | 0.376 |
| 150 | 150 | 0.342 |
| 151 | 151 | 0.88 |
| 152 | 152 | 0.0583 |
| 153 | 153 | 0.511 |
| 154 | 154 | 0.713 |
| 155 | 155 | 0.103 |
| 156 | 156 | 0.329 |
| 157 | 157 | 0.476 |
| 158 | 158 | 0.0452 |
| 159 | 159 | 0.991 |
| 16 | 16 | 0.022 |
| 160 | 160 | 0.202 |
| 161 | 161 | 0.803 |
| 162 | 162 | 0.458 |
| 163 | 163 | 0.979 |
| 164 | 164 | 0.0045 |
| 165 | 165 | 0.731 |
| 166 | 166 | 0.0412 |
| 167 | 167 | 0.722 |
| 168 | 168 | 0.701 |
| 169 | 169 | 0.0103 |
| 17 | 17 | 0.593 |
| 18 | 18 | 0.559 |
| 19 | 19 | 0.00429 |
| 2 | 2 | 0.521 |
| 20 | 20 | 0.643 |
| 21 | 21 | 0.0512 |
| 22 | 22 | 0.615 |
| 23 | 23 | 0.596 |
| 24 | 24 | 0.243 |
| 25 | 25 | 0.461 |
| 26 | 26 | 0.125 |
| 27 | 27 | 0.889 |
| 28 | 28 | 0.612 |
| 29 | 29 | 0.743 |
| 3 | 3 | 0.266 |
| 30 | 30 | 0.764 |
| 31 | 31 | 0.578 |
| 32 | 32 | 9.21153e-23 |
| 33 | 33 | 0.926 |
| 34 | 34 | 0.995 |
| 35 | 35 | 0.984 |
| 36 | 36 | 0.539 |
| 37 | 37 | 0.0449 |
| 38 | 38 | 0.376 |
| 39 | 39 | 0.373 |
| 4 | 4 | 0.297 |
| 40 | 40 | 0.917 |
| 41 | 41 | 0.351 |
| 42 | 42 | 0.826 |
| 43 | 43 | 0.644 |
| 44 | 44 | 0.497 |
| 45 | 45 | 0.71 |
| 46 | 46 | 0.571 |
| 47 | 47 | 0.936 |
| 48 | 48 | 0.752 |
| 49 | 49 | 0.91 |
| 5 | 5 | 0.891 |
| 50 | 50 | 0.611 |
| 51 | 51 | 0.734 |
| 52 | 52 | 0.84 |
| 53 | 53 | 0.767 |
| 54 | 54 | 0.29 |
| 55 | 55 | 0.0434 |
| 56 | 56 | 0.894 |
| 57 | 57 | 0.315 |
| 58 | 58 | 0.558 |
| 59 | 59 | 0.252 |
| 6 | 6 | 0.522 |
| 60 | 60 | 0.812 |
| 61 | 61 | 0.681 |
| 62 | 62 | 0.559 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.893 |
| 65 | 65 | 0.691 |
| 66 | 66 | 0.0515 |
| 67 | 67 | 0.791 |
| 68 | 68 | 0.483 |
| 69 | 69 | 0.568 |
| 7 | 7 | 0.391 |
| 70 | 70 | 0.0427 |
| 71 | 71 | 0.212 |
| 72 | 72 | 0.346 |
| 73 | 73 | 0.0257 |
| 74 | 74 | 0.408 |
| 75 | 75 | 0.663 |
| 76 | 76 | 0.146 |
| 77 | 77 | 0.0868 |
| 78 | 78 | 0.76 |
| 79 | 79 | 1.42552e-4 |
| 8 | 8 | 0.116 |
| 80 | 80 | 0.0572 |
| 81 | 81 | 0.883 |
| 82 | 82 | 0.00562 |
| 83 | 83 | 0.472 |
| 84 | 84 | 0.639 |
| 85 | 85 | 0.194 |
| 86 | 86 | 0.807 |
| 87 | 87 | 0.851 |
| 88 | 88 | 0.121 |
| 89 | 89 | 0.293 |
| 9 | 9 | 0.687 |
| 90 | 90 | 0.936 |
| 91 | 91 | 0.965 |
| 92 | 92 | 0.0719 |
| 93 | 93 | 0.518 |
| 94 | 94 | 0.204 |
| 95 | 95 | 0.682 |
| 96 | 96 | 0.654 |
| 97 | 97 | 0.737 |
| 98 | 98 | 0.216 |
| 99 | 99 | 0.00131 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13818
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0200002 olfactory epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0200002 (olfactory epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
