FF:11936-126A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004726 | |||
|accession_numbers=CAGE;DRX008387;DRR009259;DRZ000684;DRZ002069;DRZ012034;DRZ013419 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0200002 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11936-126A1 | |id=FF:11936-126A1 | ||
|is_a=FF:0000002;;FF:0000210;;FF:0200002 | |is_a=FF:0000002;;FF:0000210;;FF:0200002 | ||
|is_obsolete= | |||
|library_id=CNhs13819 | |||
|library_id_phase_based=2:CNhs13819 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11936 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11936 | |||
|name=Olfactory epithelial cells, donor4 | |name=Olfactory epithelial cells, donor4 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.112209877683733,0,0.146767307268503,0.0111866643368996,0,0,0,0,0,0,0,0,0,0,0,0.0914146875965646,0,0.20623845098344,0,0.0240540762013264,0,0,0,-0.0498497438654046,0,0,0.127112389284725,0,0,0,0,0,0,0,0,0,0,0.130791706039133,0,0.0596081221508374,0,0.0481081524026529,0,0,0,0,0,0,0.0411808319067321,0,0,0,0,0,0.0847860436318291,0,0.0337993447965277,0,0,-0.0492354748104441,0.130791706039133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0222367573739544,0.0240540762013264,0,0.114081974102597,0,0,0.0509360408900863,0.125956084312138,0,0,0.0317208278391148,0.0390522359605274,0.0966199640870969,0,0.359561461331868,0,0.166893368717546,-0.0499271988350535,0.0624675151339265,0,0,0,0,0,0,0.0481081524026529,0,0,0,0,0,0,0,0,0,0,0.0111271666376383,0,0,0,0.0481081524026529,0.12204127839708,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0481081524026529,0,-0.0499271988350535,0,0.166893368717546,0.0914146875965646,0,0,0,0,0,0.359561461331868,0,0,0.372208569861426,0.0240540762013264,-0.474086218752008,-0.0521004549269072,0,0,0.119000067127324,0,0.0481081524026529,0,0,0.0481081524026529,0,0.0481081524026529,0.0481081524026529,0,0.750397289132383,0,0.0410021360072497,0,0,0.0481081524026529,0,0.132716387908427,0.47535476078515,0,0.109505229432129,0.333545170792275,0,0,0,0,0.29681165550907,0,0.110296524765975,0.0480715377157155,0.125658434668025,0.173350521878266,-0.00760434437852911,0,0,0,-0.0841214823264149,0.207294480771936,0,0,0.267498669951649,0.0294506841766379,0,0,1.48556381618795,0,-0.0296370286176215,0.097935232082563,0,0.0778902595011197,0,0,0,0,0,0,0,0.0914146875965646,0.260068979063588,0,0,0.611208798997664,0.165568627661108,0,0.0914146875965646,0.0914146875965646,0.00368328296752751,0.247236102555811,0,0,0.119271068383511,0.36180769510249,-0.00083759200404182,-0.197123251374039,0,-0.25428157460726,0.0957490084993531,-0.356862534712778,0.0390522359605274,0.139757213574556,0.285893358460213,0.0440899648028035,0.213529516535747,-0.0887984665025332,0.0894100068567094,-0.0399927680671874,0.0414000584855036,-0.0118290062438877,0.18384823544101,0.0481081524026529,0,0.0532827795598297,0.145780695452272,0,0.00666532572969314,0.227313692550765,0.00025798265979754,0.15752420943239,0.0928200132421433,0.052336300415625,-0.102424677324693,-0.0395325284566706,0.185729991878691,0.0949617209767374,0.387773764088017,0.140311438224561,0.458526449894448,0.0013105156345716,0.103942691861765,0.155168464145928,-0.076753875753649,0.0433644756998115,0.0246447466305053,0.244313840994935,0.0240540762013264,0.0784291194549537,0.0824018564219087,0,0.176615117442227,0.401286314500032,0.0481081524026529,0,0,0,0,-0.313276462556249,0.215288482750684,0.0543035013901499,0,-0.00315741928822799,0.137800590877643,-0.0680228554053625,0,0.0277903816019793,0.0851661111023218,0,0.0467433333727416,0,-0.0175930358836065,0.742259389318287,0.103021960839726,0.145131775771541,0.0723448792273076,0.0331655200168935,0.0463999740305245,0.161778863265812,0.250752600458643,0.0622361026000965,0.803644828484183,0.0308119064747909,0.240301945805956,0.521269210918134,0.10210070216115,0.0317979476658833,0.130791706039133,0.211021610062082,0,-0.113857103532702,0,-0.2034073762634,0.196072208680163,-0.308497668541553,-0.164491401591892,0.0175859476862368,0.00613946203499061,0.679450864130388,0.0914146875965646,0.0408147421160752,0,0,0.0498558805571687,0.115594494946708,0.288939288526192,0.10078627871573,0,0.189983386981787,0,0.0481081524026529,0.416539049670273,0.124085423567479,0,-0.0905501614850945,0.0222367573739544,0.0151714039516958,0.0148206326041987,0.130791706039133,0,-0.0921679054404978,-0.0204663592228116,0,-0.184327458343436,0.150409442852835,0.125956084312138,-0.161911653890191,0.0447426800951809,-0.108622809454255,0.00205226214207216,0,-0.177527765965176,0,0.292666748148954,0,0,0.0443656904972462,0,0,0,0.0914146875965646,0.114428032015731,0.00634233212608261,0.0324581766112085,0,0,0,0,0,0.139754735298171,0.137723894123629,0.0481081524026529,0.199378462416656,0,0,0,0,0.0481081524026529,0,0,0.0914146875965646,1.0072880544969,0.0501494830928977,0.00777429036271252,0,0,0,0,0.165517520433869,-0.00301359820291569,0.0481081524026529,-0.00107100045849892,0,0,0,0,0.114081974102597,0,0,0,0.0240540762013264,-0.00962230465101113,0.220292020652004,0,0.0481081524026529,0,0.124935030267853,0,0,0.231176008559716,0.0162103826163238,-0.0993013700151871,0,0.0481081524026529,0.383903576170716,0,0.277269002699478,-0.0334737271441886,0,0.241209657671603,0.471704584915515,0.355177522285585,0,0,-0.0944537630723418,0,0.0697614199996087,-0.0104092409535357,0,0,0.11527321794776,0,0,0,0,0,0,0.462244242003715,0.115588004279858,0,0,0,0,0,0,0.0481081524026529,0,0,0,0.126907569909998,0.0385676493806224,0.0977185651351684,0,0,0,0,0,0,0.184869361413511,0.0743796957595277,0,0,0.0140443698590775,0,0,0,0,0,0.135565244256303,0,0,0,0,0,0.0337993447965277,0,0,0,0,-0.0257348237288537,0,0,-0.0172931531299263,0,0,0,0,0,0,0.0155693383914986,0,0,0,0,0,0,0.163839976910247,0.157589402958407,0,0,0,0,0,0,0,0.146767307268503,0,0.0481081524026529,0,0,1.88807880279542,0,0,0,0.254765076542711,0,-0.112209877683733,0,0,0.260068979063588,0,0,0,0,0,0,0,0.200222963891808,0,0,0,0,0,0,0,0.190620461493672,0,0,0.649365246787317,0,0.178550898664203,0.125715780025805,0,0,0.13562462744366,0,0,0,0,0,0,0.0143669197697552,0.127243076982759,0,0,0,0,0,0,0.0240540762013264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0240540762013264,0.0822116039879325,0,0,0,0,0,0,0,-0.0498497438654046,0,0,-0.0679787335991997,0,0,0,0,0.0533396794259979,0,0.0246812614155935,0.0496349893181785,0.0984331032710822,0,0,0.130791706039133,0.156414730254842,0,0.0188528207647921,0.0481081524026529,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0481081524026529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20623845098344,0,0,0,0,0,0,0,0,0,0,0,0.0159056629079428,0.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| |||
|rna_box=126 | |rna_box=126 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10.71 | |rna_weight_ug=10.71 | ||
|sample_age=64 | |sample_age=64 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=caucasian | |sample_ethnicity=caucasian | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.05056955889042e-213!GO:0005737;cytoplasm;7.72684821564332e-178!GO:0043226;organelle;7.39446932489636e-167!GO:0043229;intracellular organelle;1.73996411031579e-166!GO:0043231;intracellular membrane-bound organelle;9.08127493330536e-163!GO:0043227;membrane-bound organelle;1.50847570039318e-162!GO:0044444;cytoplasmic part;2.3530157186414e-125!GO:0044422;organelle part;6.00649724406818e-119!GO:0044446;intracellular organelle part;1.54683355079865e-117!GO:0032991;macromolecular complex;7.94516292746899e-84!GO:0005515;protein binding;1.50921295762926e-77!GO:0044238;primary metabolic process;1.82005319310859e-77!GO:0044237;cellular metabolic process;1.28093434985068e-76!GO:0043170;macromolecule metabolic process;3.55516539991876e-75!GO:0030529;ribonucleoprotein complex;4.60665887143965e-70!GO:0005634;nucleus;4.16749595516224e-59!GO:0043233;organelle lumen;2.46478764393078e-58!GO:0031974;membrane-enclosed lumen;2.46478764393078e-58!GO:0005739;mitochondrion;1.33242426656167e-56!GO:0044428;nuclear part;1.58930715719064e-55!GO:0003723;RNA binding;1.35379871683883e-54!GO:0019538;protein metabolic process;1.43020767721394e-52!GO:0044260;cellular macromolecule metabolic process;7.0408318293628e-48!GO:0031090;organelle membrane;4.61544661965722e-47!GO:0044267;cellular protein metabolic process;1.18430718937922e-46!GO:0005840;ribosome;5.41771569035501e-46!GO:0016043;cellular component organization and biogenesis;5.69716413952195e-46!GO:0006412;translation;3.31947840795878e-44!GO:0043234;protein complex;7.83588013211826e-44!GO:0015031;protein transport;4.20310143937973e-41!GO:0033036;macromolecule localization;9.12289165400345e-41!GO:0003735;structural constituent of ribosome;2.29342399499694e-40!GO:0043283;biopolymer metabolic process;4.80915770077909e-40!GO:0044429;mitochondrial part;3.32935083100712e-38!GO:0045184;establishment of protein localization;4.19252495601342e-38!GO:0008104;protein localization;5.19205388490467e-38!GO:0005829;cytosol;1.74547675715694e-36!GO:0033279;ribosomal subunit;5.15478526950302e-36!GO:0031967;organelle envelope;3.657334014962e-35!GO:0031975;envelope;5.95231551102639e-35!GO:0031981;nuclear lumen;2.74920165418969e-34!GO:0009059;macromolecule biosynthetic process;3.35660787996544e-34!GO:0010467;gene expression;5.47297052932385e-33!GO:0009058;biosynthetic process;6.7471275436811e-33!GO:0006396;RNA processing;1.71533513072367e-32!GO:0044249;cellular biosynthetic process;3.431067612112e-32!GO:0046907;intracellular transport;4.82950870834729e-32!GO:0065003;macromolecular complex assembly;2.43627292931818e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.17038032562688e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.68769007741194e-28!GO:0016071;mRNA metabolic process;2.23708973739971e-28!GO:0043228;non-membrane-bound organelle;3.46268704215398e-27!GO:0043232;intracellular non-membrane-bound organelle;3.46268704215398e-27!GO:0006886;intracellular protein transport;6.85702005761026e-27!GO:0008380;RNA splicing;1.98030286078927e-26!GO:0006996;organelle organization and biogenesis;2.94338083297499e-26!GO:0022607;cellular component assembly;4.73074534141148e-26!GO:0005740;mitochondrial envelope;8.42533798454341e-25!GO:0006397;mRNA processing;6.47418943082631e-24!GO:0031966;mitochondrial membrane;1.39055058675938e-23!GO:0019866;organelle inner membrane;1.5635585606635e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.72960711246851e-23!GO:0044445;cytosolic part;1.05566769089351e-22!GO:0005654;nucleoplasm;5.76420049608903e-22!GO:0005743;mitochondrial inner membrane;7.66710034127871e-22!GO:0006259;DNA metabolic process;1.40351810153545e-20!GO:0012505;endomembrane system;5.09143179072811e-20!GO:0000166;nucleotide binding;1.85012450083826e-19!GO:0005783;endoplasmic reticulum;2.56221789134315e-19!GO:0051641;cellular localization;3.8115297616105e-19!GO:0006119;oxidative phosphorylation;4.21602339566314e-19!GO:0051649;establishment of cellular localization;4.6457224670577e-19!GO:0005681;spliceosome;1.06433167908736e-18!GO:0015935;small ribosomal subunit;1.32361851329689e-18!GO:0006512;ubiquitin cycle;1.61285747118824e-18!GO:0015934;large ribosomal subunit;1.86303062256894e-18!GO:0048770;pigment granule;4.04534872622821e-18!GO:0042470;melanosome;4.04534872622821e-18!GO:0006457;protein folding;4.05408017749018e-18!GO:0044451;nucleoplasm part;4.21409087735853e-18!GO:0016874;ligase activity;7.87831958337895e-18!GO:0005794;Golgi apparatus;1.2350773467023e-17!GO:0044455;mitochondrial membrane part;1.2350773467023e-17!GO:0016462;pyrophosphatase activity;2.17613993429e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.4950917572742e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.7768087961174e-17!GO:0017111;nucleoside-triphosphatase activity;4.17839704244955e-17!GO:0008134;transcription factor binding;4.28203798936582e-17!GO:0022618;protein-RNA complex assembly;5.07423377774073e-17!GO:0048193;Golgi vesicle transport;3.33538411193935e-16!GO:0003676;nucleic acid binding;4.6372052220075e-16!GO:0043412;biopolymer modification;5.0239823622188e-16!GO:0031980;mitochondrial lumen;7.99448020754717e-16!GO:0005759;mitochondrial matrix;7.99448020754717e-16!GO:0044432;endoplasmic reticulum part;9.96938611283919e-16!GO:0007049;cell cycle;1.5021487967067e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.82612403781883e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.44736407664275e-15!GO:0019941;modification-dependent protein catabolic process;3.76197180880961e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.76197180880961e-15!GO:0005746;mitochondrial respiratory chain;4.65293882481529e-15!GO:0044257;cellular protein catabolic process;5.2820324565904e-15!GO:0008135;translation factor activity, nucleic acid binding;5.31251262159386e-15!GO:0044265;cellular macromolecule catabolic process;6.40861518184358e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.48507432402018e-14!GO:0006464;protein modification process;1.88849462110341e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.33513763692665e-14!GO:0032553;ribonucleotide binding;4.9501306711729e-14!GO:0032555;purine ribonucleotide binding;4.9501306711729e-14!GO:0043285;biopolymer catabolic process;4.9501306711729e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.9501306711729e-14!GO:0017076;purine nucleotide binding;5.48764856903242e-14!GO:0006605;protein targeting;1.12876072915704e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.87492739756849e-13!GO:0030163;protein catabolic process;2.93418400905106e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.93418400905106e-13!GO:0003954;NADH dehydrogenase activity;2.93418400905106e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.93418400905106e-13!GO:0016070;RNA metabolic process;4.60628574952355e-13!GO:0005730;nucleolus;6.29016528939029e-13!GO:0016192;vesicle-mediated transport;6.67121829442054e-13!GO:0009057;macromolecule catabolic process;8.20266439304182e-13!GO:0051186;cofactor metabolic process;1.16483681357743e-12!GO:0043687;post-translational protein modification;1.5862603136037e-12!GO:0003743;translation initiation factor activity;2.5190607025939e-12!GO:0051082;unfolded protein binding;2.64552165342549e-12!GO:0012501;programmed cell death;6.20853471073215e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.02130593860594e-12!GO:0005524;ATP binding;8.28314506411964e-12!GO:0005793;ER-Golgi intermediate compartment;9.42550951617859e-12!GO:0006915;apoptosis;1.73108068687128e-11!GO:0006413;translational initiation;1.7344993156716e-11!GO:0044248;cellular catabolic process;1.86155858594047e-11!GO:0032559;adenyl ribonucleotide binding;1.90269602538657e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.04955959251574e-11!GO:0045271;respiratory chain complex I;2.04955959251574e-11!GO:0005747;mitochondrial respiratory chain complex I;2.04955959251574e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.21831242504274e-11!GO:0005761;mitochondrial ribosome;2.23379358386507e-11!GO:0000313;organellar ribosome;2.23379358386507e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.61648819506193e-11!GO:0042773;ATP synthesis coupled electron transport;2.61648819506193e-11!GO:0008639;small protein conjugating enzyme activity;2.77395929788547e-11!GO:0030554;adenyl nucleotide binding;2.79721467702298e-11!GO:0005635;nuclear envelope;3.72860182387165e-11!GO:0022402;cell cycle process;4.13272586634367e-11!GO:0003712;transcription cofactor activity;4.55056921742296e-11!GO:0006974;response to DNA damage stimulus;4.67185884328597e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.44229964677822e-11!GO:0004842;ubiquitin-protein ligase activity;5.65591776700062e-11!GO:0008219;cell death;6.37354110790321e-11!GO:0016265;death;6.37354110790321e-11!GO:0005789;endoplasmic reticulum membrane;7.72537102636713e-11!GO:0019787;small conjugating protein ligase activity;8.34559697949014e-11!GO:0048523;negative regulation of cellular process;1.07689788629802e-10!GO:0031965;nuclear membrane;1.14072356797504e-10!GO:0009055;electron carrier activity;1.34798570286889e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.1590527395738e-10!GO:0006913;nucleocytoplasmic transport;3.30272233254987e-10!GO:0006732;coenzyme metabolic process;4.58454462361749e-10!GO:0051169;nuclear transport;7.01690135035627e-10!GO:0050794;regulation of cellular process;7.68574366855447e-10!GO:0008565;protein transporter activity;9.17876075965758e-10!GO:0006446;regulation of translational initiation;9.71493783436808e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.08603698500196e-09!GO:0000375;RNA splicing, via transesterification reactions;1.08603698500196e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.08603698500196e-09!GO:0016881;acid-amino acid ligase activity;1.19086267536612e-09!GO:0000278;mitotic cell cycle;1.56627563379142e-09!GO:0044453;nuclear membrane part;2.69252968967526e-09!GO:0048519;negative regulation of biological process;3.11866683112503e-09!GO:0016604;nuclear body;3.19378953551082e-09!GO:0006366;transcription from RNA polymerase II promoter;3.56575257463398e-09!GO:0006461;protein complex assembly;6.00967157238395e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.57676231138353e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.85893060002314e-09!GO:0042623;ATPase activity, coupled;1.27399780962591e-08!GO:0051276;chromosome organization and biogenesis;1.468457035632e-08!GO:0016887;ATPase activity;1.60196610803437e-08!GO:0009259;ribonucleotide metabolic process;1.74393870932157e-08!GO:0006281;DNA repair;2.02324777120571e-08!GO:0006323;DNA packaging;2.22535457092716e-08!GO:0051246;regulation of protein metabolic process;2.25772290175615e-08!GO:0005768;endosome;2.29048809726038e-08!GO:0051726;regulation of cell cycle;2.76931165398736e-08!GO:0000074;regulation of progression through cell cycle;2.87948649780828e-08!GO:0030120;vesicle coat;3.01025817449166e-08!GO:0030662;coated vesicle membrane;3.01025817449166e-08!GO:0043069;negative regulation of programmed cell death;4.1324855887911e-08!GO:0017038;protein import;4.20063490735415e-08!GO:0044431;Golgi apparatus part;4.21574306213981e-08!GO:0009150;purine ribonucleotide metabolic process;5.93643193380189e-08!GO:0006163;purine nucleotide metabolic process;5.96523524297831e-08!GO:0043066;negative regulation of apoptosis;5.9742762525578e-08!GO:0006916;anti-apoptosis;8.1192402812433e-08!GO:0009260;ribonucleotide biosynthetic process;8.52773709181502e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.94185357693599e-08!GO:0009719;response to endogenous stimulus;9.63407246349296e-08!GO:0009060;aerobic respiration;1.02801944590555e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.04909655582636e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.30612932118271e-07!GO:0006164;purine nucleotide biosynthetic process;1.39444143770128e-07!GO:0043067;regulation of programmed cell death;1.55685361991682e-07!GO:0042981;regulation of apoptosis;1.61514163459158e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.67370771247932e-07!GO:0048475;coated membrane;1.68863116560802e-07!GO:0030117;membrane coat;1.68863116560802e-07!GO:0003924;GTPase activity;1.71687043556591e-07!GO:0005694;chromosome;1.72692118389324e-07!GO:0042254;ribosome biogenesis and assembly;1.79101105468202e-07!GO:0045333;cellular respiration;2.2043596624861e-07!GO:0016607;nuclear speck;2.27870436146621e-07!GO:0009141;nucleoside triphosphate metabolic process;2.49628251762137e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.57310289774926e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.57310289774926e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.57310289774926e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.86504712119491e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.86504712119491e-07!GO:0050789;regulation of biological process;3.09965506017904e-07!GO:0015986;ATP synthesis coupled proton transport;3.09965506017904e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.09965506017904e-07!GO:0005643;nuclear pore;3.11430385508696e-07!GO:0004386;helicase activity;3.33212647217742e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.33683935376465e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.82231868878961e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.82231868878961e-07!GO:0005788;endoplasmic reticulum lumen;4.92730220548486e-07!GO:0006793;phosphorus metabolic process;4.94758065701869e-07!GO:0006796;phosphate metabolic process;4.94758065701869e-07!GO:0043038;amino acid activation;5.30471015380782e-07!GO:0006418;tRNA aminoacylation for protein translation;5.30471015380782e-07!GO:0043039;tRNA aminoacylation;5.30471015380782e-07!GO:0032446;protein modification by small protein conjugation;5.4817852199249e-07!GO:0065004;protein-DNA complex assembly;5.87937817091646e-07!GO:0008361;regulation of cell size;6.1785571956889e-07!GO:0016567;protein ubiquitination;6.24918717974081e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.69489875409885e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.69489875409885e-07!GO:0016049;cell growth;7.83874123281774e-07!GO:0009056;catabolic process;7.83874123281774e-07!GO:0019829;cation-transporting ATPase activity;7.91761885064296e-07!GO:0006399;tRNA metabolic process;8.13627289459385e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.02945357597552e-07!GO:0008026;ATP-dependent helicase activity;1.24957897454805e-06!GO:0006260;DNA replication;1.24957897454805e-06!GO:0044427;chromosomal part;1.66486508929692e-06!GO:0016310;phosphorylation;1.68230042277414e-06!GO:0000151;ubiquitin ligase complex;1.87326424589991e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.91547290486775e-06!GO:0046034;ATP metabolic process;2.00689108836051e-06!GO:0065002;intracellular protein transport across a membrane;2.14646499405421e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.29359461063411e-06!GO:0001558;regulation of cell growth;2.32837414868831e-06!GO:0022403;cell cycle phase;2.39025464582372e-06!GO:0051188;cofactor biosynthetic process;2.39212898195498e-06!GO:0045786;negative regulation of progression through cell cycle;2.51074237634312e-06!GO:0006333;chromatin assembly or disassembly;2.64306218211121e-06!GO:0005798;Golgi-associated vesicle;2.67565372874438e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.10850393582201e-06!GO:0006099;tricarboxylic acid cycle;3.10850393582201e-06!GO:0046356;acetyl-CoA catabolic process;3.10850393582201e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.62293860263458e-06!GO:0046930;pore complex;3.9007923604012e-06!GO:0006754;ATP biosynthetic process;4.10482049473094e-06!GO:0006753;nucleoside phosphate metabolic process;4.10482049473094e-06!GO:0016491;oxidoreductase activity;4.50230734500427e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.58020441141545e-06!GO:0051170;nuclear import;4.62245927825226e-06!GO:0009109;coenzyme catabolic process;5.11801326765922e-06!GO:0031324;negative regulation of cellular metabolic process;5.26781096588129e-06!GO:0043566;structure-specific DNA binding;5.39331001049862e-06!GO:0000785;chromatin;5.41999751165109e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.41999751165109e-06!GO:0051789;response to protein stimulus;5.86668701535813e-06!GO:0006986;response to unfolded protein;5.86668701535813e-06!GO:0006606;protein import into nucleus;5.91204162203988e-06!GO:0031988;membrane-bound vesicle;5.93958876774793e-06!GO:0003714;transcription corepressor activity;5.9466081896777e-06!GO:0051187;cofactor catabolic process;6.2301805254294e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.45716805839128e-06!GO:0016564;transcription repressor activity;7.64747101916732e-06!GO:0043623;cellular protein complex assembly;7.67430586988668e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.83317897395885e-06!GO:0008092;cytoskeletal protein binding;7.84768556299087e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.29967410270514e-06!GO:0031252;leading edge;8.94834653402412e-06!GO:0045259;proton-transporting ATP synthase complex;9.52693865299278e-06!GO:0016568;chromatin modification;9.8290438092325e-06!GO:0003713;transcription coactivator activity;9.8290438092325e-06!GO:0015630;microtubule cytoskeleton;1.03329778401971e-05!GO:0050657;nucleic acid transport;1.09186065677175e-05!GO:0051236;establishment of RNA localization;1.09186065677175e-05!GO:0050658;RNA transport;1.09186065677175e-05!GO:0006403;RNA localization;1.09195543754596e-05!GO:0044440;endosomal part;1.11905137129872e-05!GO:0010008;endosome membrane;1.11905137129872e-05!GO:0005667;transcription factor complex;1.17604885118732e-05!GO:0006084;acetyl-CoA metabolic process;1.27907785487004e-05!GO:0000139;Golgi membrane;1.32676295520068e-05!GO:0003697;single-stranded DNA binding;1.42521946994821e-05!GO:0016740;transferase activity;1.74082906901704e-05!GO:0016563;transcription activator activity;1.8110628712664e-05!GO:0000087;M phase of mitotic cell cycle;1.8110628712664e-05!GO:0009892;negative regulation of metabolic process;1.96670159467431e-05!GO:0000245;spliceosome assembly;2.00921273237317e-05!GO:0007067;mitosis;2.14900817106452e-05!GO:0031982;vesicle;2.15591362977641e-05!GO:0009117;nucleotide metabolic process;2.2714096856775e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.47994656870632e-05!GO:0031410;cytoplasmic vesicle;2.54608927615202e-05!GO:0006613;cotranslational protein targeting to membrane;2.56892383267758e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.60737934044836e-05!GO:0019843;rRNA binding;2.66629049520424e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.71010744544294e-05!GO:0005773;vacuole;2.91987487845942e-05!GO:0030029;actin filament-based process;2.96249540162533e-05!GO:0007005;mitochondrion organization and biogenesis;3.03713864034805e-05!GO:0004298;threonine endopeptidase activity;3.2268529606758e-05!GO:0051301;cell division;3.23741759960027e-05!GO:0048522;positive regulation of cellular process;3.48813772187817e-05!GO:0007243;protein kinase cascade;4.13246106420734e-05!GO:0009108;coenzyme biosynthetic process;4.34689674614807e-05!GO:0040008;regulation of growth;5.00489518045231e-05!GO:0005769;early endosome;5.09641906274814e-05!GO:0007010;cytoskeleton organization and biogenesis;5.27477866250676e-05!GO:0006091;generation of precursor metabolites and energy;5.43028407895688e-05!GO:0006752;group transfer coenzyme metabolic process;6.10705240621701e-05!GO:0005525;GTP binding;6.16796106648255e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.26283113465932e-05!GO:0051329;interphase of mitotic cell cycle;7.4200935008188e-05!GO:0051325;interphase;7.70080418142122e-05!GO:0030867;rough endoplasmic reticulum membrane;7.82632485113395e-05!GO:0030133;transport vesicle;9.16948223142531e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.6584812051255e-05!GO:0006334;nucleosome assembly;0.000102627365571938!GO:0005905;coated pit;0.000102627365571938!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000103210076298411!GO:0016859;cis-trans isomerase activity;0.000118840524082792!GO:0005762;mitochondrial large ribosomal subunit;0.000123475781271616!GO:0000315;organellar large ribosomal subunit;0.000123475781271616!GO:0008654;phospholipid biosynthetic process;0.000131577511616862!GO:0016787;hydrolase activity;0.000152477574502096!GO:0051028;mRNA transport;0.000168594250933919!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000170716266974317!GO:0006364;rRNA processing;0.000172777313732139!GO:0005770;late endosome;0.00017333947742751!GO:0051427;hormone receptor binding;0.000204483640571813!GO:0019867;outer membrane;0.000221815285409152!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000239675264270349!GO:0031497;chromatin assembly;0.00024073032439899!GO:0003724;RNA helicase activity;0.000241991582606853!GO:0016072;rRNA metabolic process;0.000246248332381088!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000271947591186276!GO:0016481;negative regulation of transcription;0.000278562167728826!GO:0045454;cell redox homeostasis;0.000278562167728826!GO:0019222;regulation of metabolic process;0.00028002751551863!GO:0007050;cell cycle arrest;0.000282840441898361!GO:0031968;organelle outer membrane;0.000306636853617363!GO:0000323;lytic vacuole;0.000307315896467099!GO:0005764;lysosome;0.000307315896467099!GO:0044262;cellular carbohydrate metabolic process;0.000322929334443555!GO:0016853;isomerase activity;0.000345508889466171!GO:0005048;signal sequence binding;0.000351174677507824!GO:0032561;guanyl ribonucleotide binding;0.000355442299887666!GO:0019001;guanyl nucleotide binding;0.000355442299887666!GO:0019899;enzyme binding;0.000356481302606409!GO:0035257;nuclear hormone receptor binding;0.00038631332161057!GO:0030663;COPI coated vesicle membrane;0.000388202391298525!GO:0030126;COPI vesicle coat;0.000388202391298525!GO:0033116;ER-Golgi intermediate compartment membrane;0.000404759590965894!GO:0048471;perinuclear region of cytoplasm;0.000408981872299424!GO:0005885;Arp2/3 protein complex;0.000439187759068291!GO:0065007;biological regulation;0.000454745831337069!GO:0005813;centrosome;0.000468776773237846!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0004959966951943!GO:0005791;rough endoplasmic reticulum;0.00051128224371992!GO:0006612;protein targeting to membrane;0.000514059785043841!GO:0030132;clathrin coat of coated pit;0.000560798535990754!GO:0007264;small GTPase mediated signal transduction;0.000587086033043954!GO:0008250;oligosaccharyl transferase complex;0.000599351070361973!GO:0004576;oligosaccharyl transferase activity;0.00062495313174899!GO:0030137;COPI-coated vesicle;0.000646047902092596!GO:0043021;ribonucleoprotein binding;0.000670585263143791!GO:0005815;microtubule organizing center;0.000677223162511029!GO:0006892;post-Golgi vesicle-mediated transport;0.000679096775106703!GO:0043284;biopolymer biosynthetic process;0.000848284872211564!GO:0005741;mitochondrial outer membrane;0.000855903093443993!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000893855487605941!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000895617752941259!GO:0015399;primary active transmembrane transporter activity;0.000895617752941259!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000897427241918847!GO:0004674;protein serine/threonine kinase activity;0.000954344185640382!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000998749872184878!GO:0051252;regulation of RNA metabolic process;0.000998749872184878!GO:0016779;nucleotidyltransferase activity;0.00103306227687415!GO:0003690;double-stranded DNA binding;0.0010681958476893!GO:0006891;intra-Golgi vesicle-mediated transport;0.00112469925485182!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00112924321560937!GO:0000314;organellar small ribosomal subunit;0.00112924321560937!GO:0005763;mitochondrial small ribosomal subunit;0.00112924321560937!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00114674701775126!GO:0016044;membrane organization and biogenesis;0.00114674701775126!GO:0051168;nuclear export;0.00121700194962628!GO:0000279;M phase;0.00131682365055639!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00136129582517883!GO:0051920;peroxiredoxin activity;0.00139468105942302!GO:0016363;nuclear matrix;0.00155450307429467!GO:0048518;positive regulation of biological process;0.00158499206146454!GO:0003779;actin binding;0.00180455059148407!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00186288083785784!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00186288083785784!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00186288083785784!GO:0005520;insulin-like growth factor binding;0.00193532073440189!GO:0006414;translational elongation;0.00198141069345553!GO:0051128;regulation of cellular component organization and biogenesis;0.00202377700348369!GO:0031072;heat shock protein binding;0.00203846882560071!GO:0016197;endosome transport;0.00208570371265469!GO:0018196;peptidyl-asparagine modification;0.00230361198195061!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00230361198195061!GO:0051287;NAD binding;0.00234676208865925!GO:0006650;glycerophospholipid metabolic process;0.00252924069685253!GO:0009967;positive regulation of signal transduction;0.00265092403446626!GO:0045892;negative regulation of transcription, DNA-dependent;0.0027658791826446!GO:0046474;glycerophospholipid biosynthetic process;0.0028883257059954!GO:0003729;mRNA binding;0.00291029968331204!GO:0000059;protein import into nucleus, docking;0.00292408283396334!GO:0008154;actin polymerization and/or depolymerization;0.00299095761971695!GO:0004177;aminopeptidase activity;0.00300854608506981!GO:0030658;transport vesicle membrane;0.0030199022626835!GO:0008186;RNA-dependent ATPase activity;0.0033800436958235!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00350675122432637!GO:0048500;signal recognition particle;0.0035085971094056!GO:0030134;ER to Golgi transport vesicle;0.00357338199303348!GO:0030127;COPII vesicle coat;0.00367842112359838!GO:0012507;ER to Golgi transport vesicle membrane;0.00367842112359838!GO:0005819;spindle;0.00408098499585946!GO:0017166;vinculin binding;0.00412097724148777!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00453092131178224!GO:0003899;DNA-directed RNA polymerase activity;0.00455433488751871!GO:0003711;transcription elongation regulator activity;0.00466144638540988!GO:0000082;G1/S transition of mitotic cell cycle;0.0046855898120331!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00488402598670359!GO:0008047;enzyme activator activity;0.00489513126084296!GO:0051540;metal cluster binding;0.00493002165221057!GO:0051536;iron-sulfur cluster binding;0.00493002165221057!GO:0030118;clathrin coat;0.00493091545883151!GO:0008022;protein C-terminus binding;0.00496215216561416!GO:0035258;steroid hormone receptor binding;0.00499555727672531!GO:0045941;positive regulation of transcription;0.00514876998077465!GO:0043488;regulation of mRNA stability;0.00514876998077465!GO:0043487;regulation of RNA stability;0.00514876998077465!GO:0008139;nuclear localization sequence binding;0.00519594559290193!GO:0030521;androgen receptor signaling pathway;0.00519594559290193!GO:0030176;integral to endoplasmic reticulum membrane;0.00521482997710957!GO:0048468;cell development;0.00547228437479316!GO:0030027;lamellipodium;0.00558298772286035!GO:0045893;positive regulation of transcription, DNA-dependent;0.00593604734929747!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00606504704147264!GO:0015002;heme-copper terminal oxidase activity;0.00606504704147264!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00606504704147264!GO:0004129;cytochrome-c oxidase activity;0.00606504704147264!GO:0006402;mRNA catabolic process;0.00609091885928507!GO:0048487;beta-tubulin binding;0.00654240383503582!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00664758113841958!GO:0003684;damaged DNA binding;0.00665042657650041!GO:0046489;phosphoinositide biosynthetic process;0.00670601033684943!GO:0043492;ATPase activity, coupled to movement of substances;0.00681451132368554!GO:0033673;negative regulation of kinase activity;0.00681451132368554!GO:0006469;negative regulation of protein kinase activity;0.00681451132368554!GO:0030660;Golgi-associated vesicle membrane;0.00698762778216717!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00704906208523572!GO:0009165;nucleotide biosynthetic process;0.00722166359256166!GO:0065009;regulation of a molecular function;0.00761615756023524!GO:0006509;membrane protein ectodomain proteolysis;0.00761615756023524!GO:0033619;membrane protein proteolysis;0.00761615756023524!GO:0043681;protein import into mitochondrion;0.00761768225906681!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00771041024653557!GO:0045047;protein targeting to ER;0.00771041024653557!GO:0006740;NADPH regeneration;0.00794732193248813!GO:0006098;pentose-phosphate shunt;0.00794732193248813!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00805648326331625!GO:0005096;GTPase activator activity;0.00806544115016686!GO:0004004;ATP-dependent RNA helicase activity;0.00818326289397818!GO:0030041;actin filament polymerization;0.00821339401230634!GO:0030880;RNA polymerase complex;0.00833051131453056!GO:0006383;transcription from RNA polymerase III promoter;0.00860951190262535!GO:0030032;lamellipodium biogenesis;0.00868480925226047!GO:0030518;steroid hormone receptor signaling pathway;0.0091357753378885!GO:0015631;tubulin binding;0.00927383195196278!GO:0051348;negative regulation of transferase activity;0.0095176017882499!GO:0022890;inorganic cation transmembrane transporter activity;0.0095176017882499!GO:0042802;identical protein binding;0.00959981926132333!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00959981926132333!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00959981926132333!GO:0006352;transcription initiation;0.00968109403939803!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00969214029555449!GO:0003746;translation elongation factor activity;0.00978161593539897!GO:0051052;regulation of DNA metabolic process;0.0103869020510882!GO:0001726;ruffle;0.0103966813260489!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0107927275923845!GO:0033043;regulation of organelle organization and biogenesis;0.0107927275923845!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0107927275923845!GO:0030119;AP-type membrane coat adaptor complex;0.0118586008604641!GO:0016301;kinase activity;0.0118610394886417!GO:0050681;androgen receptor binding;0.0118737912918445!GO:0007006;mitochondrial membrane organization and biogenesis;0.0120521755796126!GO:0006289;nucleotide-excision repair;0.0121401266720855!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0126822206332927!GO:0005637;nuclear inner membrane;0.0129659868499908!GO:0005874;microtubule;0.013047321221229!GO:0008312;7S RNA binding;0.0132056590716853!GO:0006354;RNA elongation;0.0133385239078447!GO:0031529;ruffle organization and biogenesis;0.0134234189546517!GO:0006261;DNA-dependent DNA replication;0.0136021172239416!GO:0030833;regulation of actin filament polymerization;0.0139786654152669!GO:0000049;tRNA binding;0.0140180951057218!GO:0005869;dynactin complex;0.0141524995827401!GO:0000786;nucleosome;0.0143163330571168!GO:0006595;polyamine metabolic process;0.0143203923355414!GO:0031625;ubiquitin protein ligase binding;0.014387235348106!GO:0003682;chromatin binding;0.0145299478958149!GO:0030659;cytoplasmic vesicle membrane;0.0147314634131602!GO:0030145;manganese ion binding;0.0147784808124111!GO:0051087;chaperone binding;0.0148169151657734!GO:0031901;early endosome membrane;0.0149711988308339!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0150860752065083!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0151055220588354!GO:0000428;DNA-directed RNA polymerase complex;0.0151055220588354!GO:0030384;phosphoinositide metabolic process;0.0156146362032864!GO:0006839;mitochondrial transport;0.016501492915693!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.01674451097439!GO:0005581;collagen;0.0168194047941928!GO:0045045;secretory pathway;0.0169027385425248!GO:0015992;proton transport;0.0169036271775575!GO:0030100;regulation of endocytosis;0.0169341796181891!GO:0001527;microfibril;0.0170270473692316!GO:0006818;hydrogen transport;0.0171234071741081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0171946667363788!GO:0005801;cis-Golgi network;0.0173484089711367!GO:0006607;NLS-bearing substrate import into nucleus;0.0175256202100927!GO:0005862;muscle thin filament tropomyosin;0.017604685179117!GO:0007265;Ras protein signal transduction;0.0176309359153281!GO:0043022;ribosome binding;0.0186141206940084!GO:0006302;double-strand break repair;0.0186141206940084!GO:0050811;GABA receptor binding;0.01863017933359!GO:0046467;membrane lipid biosynthetic process;0.0187837592873146!GO:0008287;protein serine/threonine phosphatase complex;0.0188790039047225!GO:0030125;clathrin vesicle coat;0.0189823034568261!GO:0030665;clathrin coated vesicle membrane;0.0189823034568261!GO:0030131;clathrin adaptor complex;0.0190674114991822!GO:0031323;regulation of cellular metabolic process;0.0196932623713244!GO:0007030;Golgi organization and biogenesis;0.0199896706603682!GO:0006626;protein targeting to mitochondrion;0.0201345956459396!GO:0040029;regulation of gene expression, epigenetic;0.0201807758583619!GO:0019752;carboxylic acid metabolic process;0.0207672358329003!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0212307851615106!GO:0043414;biopolymer methylation;0.0215120543791872!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0215120543791872!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0215120543791872!GO:0000209;protein polyubiquitination;0.0215229173675945!GO:0006082;organic acid metabolic process;0.0215667614877026!GO:0008632;apoptotic program;0.021591538346034!GO:0009966;regulation of signal transduction;0.0219514143976549!GO:0045334;clathrin-coated endocytic vesicle;0.0223074114696333!GO:0006611;protein export from nucleus;0.0223805561912363!GO:0035035;histone acetyltransferase binding;0.0224408411810424!GO:0044420;extracellular matrix part;0.0224809099908549!GO:0006497;protein amino acid lipidation;0.0235131968021915!GO:0007242;intracellular signaling cascade;0.0235731354778526!GO:0006897;endocytosis;0.0238849831863299!GO:0010324;membrane invagination;0.0238849831863299!GO:0006984;ER-nuclear signaling pathway;0.0250338211238844!GO:0008286;insulin receptor signaling pathway;0.0251679772733402!GO:0007160;cell-matrix adhesion;0.0255042958775442!GO:0006401;RNA catabolic process;0.0255839860467658!GO:0008180;signalosome;0.0256524054687476!GO:0016272;prefoldin complex;0.0259036438933967!GO:0006739;NADP metabolic process;0.0259814840102925!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0259814840102925!GO:0000075;cell cycle checkpoint;0.0261473238457003!GO:0031589;cell-substrate adhesion;0.0264358989503377!GO:0000339;RNA cap binding;0.0264358989503377!GO:0030128;clathrin coat of endocytic vesicle;0.0266713779184921!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0266713779184921!GO:0030122;AP-2 adaptor complex;0.0266713779184921!GO:0051059;NF-kappaB binding;0.0267389033574036!GO:0008234;cysteine-type peptidase activity;0.0267704565711851!GO:0050662;coenzyme binding;0.0268234821695187!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0271358706588479!GO:0048144;fibroblast proliferation;0.0272287694862181!GO:0048145;regulation of fibroblast proliferation;0.0272287694862181!GO:0007569;cell aging;0.0282312254799671!GO:0046914;transition metal ion binding;0.0289662478347706!GO:0048146;positive regulation of fibroblast proliferation;0.0291398783689508!GO:0005100;Rho GTPase activator activity;0.0292095317279146!GO:0045792;negative regulation of cell size;0.0294665759276512!GO:0005684;U2-dependent spliceosome;0.030215621223533!GO:0008147;structural constituent of bone;0.0307104427139169!GO:0030308;negative regulation of cell growth;0.0311386717867305!GO:0046483;heterocycle metabolic process;0.0313593672122625!GO:0018193;peptidyl-amino acid modification;0.031771472140443!GO:0045639;positive regulation of myeloid cell differentiation;0.0326751037954054!GO:0003678;DNA helicase activity;0.032828961355754!GO:0051539;4 iron, 4 sulfur cluster binding;0.033392755054094!GO:0045936;negative regulation of phosphate metabolic process;0.0338625625890844!GO:0033559;unsaturated fatty acid metabolic process;0.0340616614358587!GO:0006636;unsaturated fatty acid biosynthetic process;0.0340616614358587!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0340918237301691!GO:0007051;spindle organization and biogenesis;0.0350212553963635!GO:0008601;protein phosphatase type 2A regulator activity;0.0351239240284029!GO:0005595;collagen type XII;0.0353562124992141!GO:0005832;chaperonin-containing T-complex;0.0357741279578585!GO:0032906;transforming growth factor-beta2 production;0.0359203651782174!GO:0032909;regulation of transforming growth factor-beta2 production;0.0359203651782174!GO:0000287;magnesium ion binding;0.0360891650818328!GO:0006350;transcription;0.0366239892688434!GO:0030522;intracellular receptor-mediated signaling pathway;0.0372357996895873!GO:0006338;chromatin remodeling;0.0377268260054028!GO:0007040;lysosome organization and biogenesis;0.0378653102979662!GO:0004722;protein serine/threonine phosphatase activity;0.0383109522795638!GO:0006007;glucose catabolic process;0.0391370236546915!GO:0031371;ubiquitin conjugating enzyme complex;0.040157122323727!GO:0047485;protein N-terminus binding;0.0403527985641146!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0406622392539399!GO:0031543;peptidyl-proline dioxygenase activity;0.0409348166521286!GO:0044433;cytoplasmic vesicle part;0.0415153936743714!GO:0005657;replication fork;0.0415397527209929!GO:0006672;ceramide metabolic process;0.0420286543825097!GO:0050178;phenylpyruvate tautomerase activity;0.0429217840982547!GO:0022415;viral reproductive process;0.0433186829651435!GO:0000792;heterochromatin;0.0436017337424505!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0436017337424505!GO:0046519;sphingoid metabolic process;0.0436113470893735!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0443780574041659!GO:0030911;TPR domain binding;0.0456068284697031!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0460131594823863!GO:0031272;regulation of pseudopodium formation;0.0465606569817253!GO:0031269;pseudopodium formation;0.0465606569817253!GO:0031344;regulation of cell projection organization and biogenesis;0.0465606569817253!GO:0031268;pseudopodium organization and biogenesis;0.0465606569817253!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0465606569817253!GO:0031274;positive regulation of pseudopodium formation;0.0465606569817253!GO:0006144;purine base metabolic process;0.0480314811099695!GO:0032535;regulation of cellular component size;0.0481424172283957!GO:0044452;nucleolar part;0.0481424172283957!GO:0003756;protein disulfide isomerase activity;0.0485130086666842!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0485130086666842!GO:0031902;late endosome membrane;0.0485981567096029!GO:0006520;amino acid metabolic process;0.0491234311062982!GO:0000118;histone deacetylase complex;0.0494258288090284!GO:0006417;regulation of translation;0.0494746915161455!GO:0016251;general RNA polymerase II transcription factor activity;0.0495374690683085 | |||
|sample_id=11936 | |sample_id=11936 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=NKX2-2,8:2.62789559587;HMGA1,2:2.23688381827;FOXL1:2.06597102972;EVI1:2.03982234078;TAL1_TCF{3,4,12}:1.90773393789;NR3C1:1.75534117251;ALX4:1.67951105968;HES1:1.49215514035;PRDM1:1.48792751821;TEAD1:1.47507610821;UFEwm:1.45980332425;LHX3,4:1.41510469654;MYBL2:1.28247634802;HIF1A:1.23169954949;KLF4:1.17874467123;AIRE:1.1601194402;SRF:1.13955467592;NFATC1..3:1.07968382911;TLX1..3_NFIC{dimer}:1.07514468312;GLI1..3:1.05507113863;FOXA2:1.02110149774;RXR{A,B,G}:1.00592135461;ADNP_IRX_SIX_ZHX:0.999021808231;ZIC1..3:0.948703827608;ZNF384:0.935021825274;GATA4:0.89389084799;GTF2A1,2:0.883665184529;NKX3-1:0.877920763896;TFAP2{A,C}:0.868411610439;PATZ1:0.819851370628;XCPE1{core}:0.794033841387;FOX{I1,J2}:0.746156826326;FOXD3:0.733696422052;GTF2I:0.730779627657;GZF1:0.726056715026;TP53:0.698218717375;HIC1:0.667299658277;HMX1:0.653649031437;HOX{A4,D4}:0.652783512553;TFAP2B:0.640620067427;MAZ:0.639868655469;XBP1:0.629943217662;MTE{core}:0.627013777339;PAX1,9:0.618904962216;NKX2-1,4:0.601075538444;NKX6-1,2:0.595946964742;IRF1,2:0.577076629366;ZBTB6:0.559658010718;ZNF238:0.557501300755;RXRA_VDR{dimer}:0.554411975366;FOXO1,3,4:0.545362319831;ESR1:0.526943753187;HSF1,2:0.485201187493;NFE2L1:0.48513705182;HAND1,2:0.461513787961;SOX17:0.413699506495;POU5F1:0.40319235405;ZBTB16:0.388786248404;ZFP161:0.381441657665;NR1H4:0.374991121622;TBX4,5:0.363746423855;NKX3-2:0.363394351845;ATF6:0.35932627305;HOX{A5,B5}:0.353602450068;CDX1,2,4:0.35347733826;TFCP2:0.338804713576;BPTF:0.334735014257;HLF:0.32133288448;TFAP4:0.320184829723;GCM1,2:0.29282153708;PITX1..3:0.290218819994;ZNF423:0.286402053081;TOPORS:0.277984962699;EN1,2:0.276136551671;POU3F1..4:0.266779540216;SP1:0.259774187027;CDC5L:0.233372122983;IKZF1:0.223457540674;SPZ1:0.216892115035;MZF1:0.177215795986;MTF1:0.168619435968;EBF1:0.125912352067;NANOG{mouse}:0.115073303541;TBP:0.104051320608;MAFB:0.0758445200062;NKX2-3_NKX2-5:0.0697622323794;RREB1:0.0683444189927;NFE2L2:0.0448210501008;SOX5:0.0447806032241;AHR_ARNT_ARNT2:0.0308636766846;EGR1..3:0.0251510774572;PAX4:0.00760004109805;TFDP1:-0.00695111304118;T:-0.0122970255376;PAX8:-0.0160312948664;MED-1{core}:-0.0169343371026;DMAP1_NCOR{1,2}_SMARC:-0.019863975065;MEF2{A,B,C,D}:-0.0257758683501;STAT2,4,6:-0.0502785006324;FOXP1:-0.0508939800085;MYFfamily:-0.061432679663;ZNF148:-0.0656984735809;POU6F1:-0.0693821498234;NR6A1:-0.0745685437764;TLX2:-0.0830334413668;ZNF143:-0.0929666203949;ONECUT1,2:-0.0968977360985;BACH2:-0.114025604128;NRF1:-0.155818512765;GFI1B:-0.158601491667;MYB:-0.175455724681;STAT5{A,B}:-0.181879550268;REST:-0.190168719945;FOS_FOS{B,L1}_JUN{B,D}:-0.194987398822;NFE2:-0.215924337184;FOSL2:-0.217200633469;HNF1A:-0.220047767737;BREu{core}:-0.235314225986;ARID5B:-0.246144837531;AR:-0.249890588876;SMAD1..7,9:-0.253211424082;RUNX1..3:-0.271477081755;DBP:-0.284187725476;NFIL3:-0.289899468795;CEBPA,B_DDIT3:-0.291560166204;PDX1:-0.292994512971;PAX3,7:-0.305566063778;FOX{D1,D2}:-0.310685225445;PAX5:-0.314942258883;NFKB1_REL_RELA:-0.324364947762;NFIX:-0.366467825485;RBPJ:-0.366532867411;RFX1:-0.372915339696;HBP1_HMGB_SSRP1_UBTF:-0.383514586519;HOX{A6,A7,B6,B7}:-0.389418141527;NHLH1,2:-0.394758901272;E2F1..5:-0.405746549182;FOXM1:-0.411051946784;PPARG:-0.42464811828;GFI1:-0.431095177545;SOX2:-0.438878660889;SNAI1..3:-0.45580013272;FOXN1:-0.46008830916;HNF4A_NR2F1,2:-0.482354428541;IRF7:-0.484013587799;FOXP3:-0.502931653199;PRRX1,2:-0.503577488614;EP300:-0.548397652168;LEF1_TCF7_TCF7L1,2:-0.554496491108;ATF2:-0.560136478769;STAT1,3:-0.560649378331;ATF4:-0.563817580908;ETS1,2:-0.570284882591;ELK1,4_GABP{A,B1}:-0.589085018376;SREBF1,2:-0.616524222361;TEF:-0.628031255144;SPI1:-0.649956270954;CREB1:-0.654472032046;VSX1,2:-0.681689691379;bHLH_family:-0.684131312533;POU2F1..3:-0.692691191649;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.693293782241;IKZF2:-0.698350233384;SPIB:-0.746993707163;PAX6:-0.826957932585;RFX2..5_RFXANK_RFXAP:-0.838880451319;TGIF1:-0.84205491526;JUN:-0.857919378994;ZEB1:-0.864949157632;ATF5_CREB3:-0.865399550627;LMO2:-0.868504042641;FOXQ1:-0.874043845043;PAX2:-0.879162042565;OCT4_SOX2{dimer}:-0.889277857908;YY1:-0.894022631985;POU1F1:-0.906453265861;NFY{A,B,C}:-0.917691523598;CUX2:-0.932050830412;RORA:-0.953907034232;ELF1,2,4:-0.974990776711;CRX:-0.991930078696;NR5A1,2:-0.996471839519;SOX{8,9,10}:-1.12817138908;FOX{F1,F2,J1}:-1.14889478621;GATA6:-1.1628214943;NANOG:-1.17909403869;HOXA9_MEIS1:-1.22541018265;ESRRA:-1.32527507281;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41867225141;PBX1:-1.42207078582;ALX1:-1.54505415541;MYOD1:-1.64436539653 | |top_motifs=NKX2-2,8:2.62789559587;HMGA1,2:2.23688381827;FOXL1:2.06597102972;EVI1:2.03982234078;TAL1_TCF{3,4,12}:1.90773393789;NR3C1:1.75534117251;ALX4:1.67951105968;HES1:1.49215514035;PRDM1:1.48792751821;TEAD1:1.47507610821;UFEwm:1.45980332425;LHX3,4:1.41510469654;MYBL2:1.28247634802;HIF1A:1.23169954949;KLF4:1.17874467123;AIRE:1.1601194402;SRF:1.13955467592;NFATC1..3:1.07968382911;TLX1..3_NFIC{dimer}:1.07514468312;GLI1..3:1.05507113863;FOXA2:1.02110149774;RXR{A,B,G}:1.00592135461;ADNP_IRX_SIX_ZHX:0.999021808231;ZIC1..3:0.948703827608;ZNF384:0.935021825274;GATA4:0.89389084799;GTF2A1,2:0.883665184529;NKX3-1:0.877920763896;TFAP2{A,C}:0.868411610439;PATZ1:0.819851370628;XCPE1{core}:0.794033841387;FOX{I1,J2}:0.746156826326;FOXD3:0.733696422052;GTF2I:0.730779627657;GZF1:0.726056715026;TP53:0.698218717375;HIC1:0.667299658277;HMX1:0.653649031437;HOX{A4,D4}:0.652783512553;TFAP2B:0.640620067427;MAZ:0.639868655469;XBP1:0.629943217662;MTE{core}:0.627013777339;PAX1,9:0.618904962216;NKX2-1,4:0.601075538444;NKX6-1,2:0.595946964742;IRF1,2:0.577076629366;ZBTB6:0.559658010718;ZNF238:0.557501300755;RXRA_VDR{dimer}:0.554411975366;FOXO1,3,4:0.545362319831;ESR1:0.526943753187;HSF1,2:0.485201187493;NFE2L1:0.48513705182;HAND1,2:0.461513787961;SOX17:0.413699506495;POU5F1:0.40319235405;ZBTB16:0.388786248404;ZFP161:0.381441657665;NR1H4:0.374991121622;TBX4,5:0.363746423855;NKX3-2:0.363394351845;ATF6:0.35932627305;HOX{A5,B5}:0.353602450068;CDX1,2,4:0.35347733826;TFCP2:0.338804713576;BPTF:0.334735014257;HLF:0.32133288448;TFAP4:0.320184829723;GCM1,2:0.29282153708;PITX1..3:0.290218819994;ZNF423:0.286402053081;TOPORS:0.277984962699;EN1,2:0.276136551671;POU3F1..4:0.266779540216;SP1:0.259774187027;CDC5L:0.233372122983;IKZF1:0.223457540674;SPZ1:0.216892115035;MZF1:0.177215795986;MTF1:0.168619435968;EBF1:0.125912352067;NANOG{mouse}:0.115073303541;TBP:0.104051320608;MAFB:0.0758445200062;NKX2-3_NKX2-5:0.0697622323794;RREB1:0.0683444189927;NFE2L2:0.0448210501008;SOX5:0.0447806032241;AHR_ARNT_ARNT2:0.0308636766846;EGR1..3:0.0251510774572;PAX4:0.00760004109805;TFDP1:-0.00695111304118;T:-0.0122970255376;PAX8:-0.0160312948664;MED-1{core}:-0.0169343371026;DMAP1_NCOR{1,2}_SMARC:-0.019863975065;MEF2{A,B,C,D}:-0.0257758683501;STAT2,4,6:-0.0502785006324;FOXP1:-0.0508939800085;MYFfamily:-0.061432679663;ZNF148:-0.0656984735809;POU6F1:-0.0693821498234;NR6A1:-0.0745685437764;TLX2:-0.0830334413668;ZNF143:-0.0929666203949;ONECUT1,2:-0.0968977360985;BACH2:-0.114025604128;NRF1:-0.155818512765;GFI1B:-0.158601491667;MYB:-0.175455724681;STAT5{A,B}:-0.181879550268;REST:-0.190168719945;FOS_FOS{B,L1}_JUN{B,D}:-0.194987398822;NFE2:-0.215924337184;FOSL2:-0.217200633469;HNF1A:-0.220047767737;BREu{core}:-0.235314225986;ARID5B:-0.246144837531;AR:-0.249890588876;SMAD1..7,9:-0.253211424082;RUNX1..3:-0.271477081755;DBP:-0.284187725476;NFIL3:-0.289899468795;CEBPA,B_DDIT3:-0.291560166204;PDX1:-0.292994512971;PAX3,7:-0.305566063778;FOX{D1,D2}:-0.310685225445;PAX5:-0.314942258883;NFKB1_REL_RELA:-0.324364947762;NFIX:-0.366467825485;RBPJ:-0.366532867411;RFX1:-0.372915339696;HBP1_HMGB_SSRP1_UBTF:-0.383514586519;HOX{A6,A7,B6,B7}:-0.389418141527;NHLH1,2:-0.394758901272;E2F1..5:-0.405746549182;FOXM1:-0.411051946784;PPARG:-0.42464811828;GFI1:-0.431095177545;SOX2:-0.438878660889;SNAI1..3:-0.45580013272;FOXN1:-0.46008830916;HNF4A_NR2F1,2:-0.482354428541;IRF7:-0.484013587799;FOXP3:-0.502931653199;PRRX1,2:-0.503577488614;EP300:-0.548397652168;LEF1_TCF7_TCF7L1,2:-0.554496491108;ATF2:-0.560136478769;STAT1,3:-0.560649378331;ATF4:-0.563817580908;ETS1,2:-0.570284882591;ELK1,4_GABP{A,B1}:-0.589085018376;SREBF1,2:-0.616524222361;TEF:-0.628031255144;SPI1:-0.649956270954;CREB1:-0.654472032046;VSX1,2:-0.681689691379;bHLH_family:-0.684131312533;POU2F1..3:-0.692691191649;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.693293782241;IKZF2:-0.698350233384;SPIB:-0.746993707163;PAX6:-0.826957932585;RFX2..5_RFXANK_RFXAP:-0.838880451319;TGIF1:-0.84205491526;JUN:-0.857919378994;ZEB1:-0.864949157632;ATF5_CREB3:-0.865399550627;LMO2:-0.868504042641;FOXQ1:-0.874043845043;PAX2:-0.879162042565;OCT4_SOX2{dimer}:-0.889277857908;YY1:-0.894022631985;POU1F1:-0.906453265861;NFY{A,B,C}:-0.917691523598;CUX2:-0.932050830412;RORA:-0.953907034232;ELF1,2,4:-0.974990776711;CRX:-0.991930078696;NR5A1,2:-0.996471839519;SOX{8,9,10}:-1.12817138908;FOX{F1,F2,J1}:-1.14889478621;GATA6:-1.1628214943;NANOG:-1.17909403869;HOXA9_MEIS1:-1.22541018265;ESRRA:-1.32527507281;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41867225141;PBX1:-1.42207078582;ALX1:-1.54505415541;MYOD1:-1.64436539653 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11936-126A1;search_select_hide=table117:FF:11936-126A1 | |||
}} | }} | ||
Latest revision as of 18:30, 4 June 2020
| Name: | Olfactory epithelial cells, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13819 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13819
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13819
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.262 |
| 10 | 10 | 0.877 |
| 100 | 100 | 0.575 |
| 101 | 101 | 0.629 |
| 102 | 102 | 0.0208 |
| 103 | 103 | 0.552 |
| 104 | 104 | 0.801 |
| 105 | 105 | 0.177 |
| 106 | 106 | 0.919 |
| 107 | 107 | 0.0825 |
| 108 | 108 | 0.694 |
| 109 | 109 | 0.703 |
| 11 | 11 | 0.623 |
| 110 | 110 | 0.758 |
| 111 | 111 | 0.398 |
| 112 | 112 | 0.854 |
| 113 | 113 | 0.352 |
| 114 | 114 | 0.734 |
| 115 | 115 | 0.343 |
| 116 | 116 | 0.174 |
| 117 | 117 | 0.491 |
| 118 | 118 | 0.659 |
| 119 | 119 | 0.612 |
| 12 | 12 | 0.154 |
| 120 | 120 | 0.971 |
| 121 | 121 | 0.493 |
| 122 | 122 | 0.0997 |
| 123 | 123 | 0.237 |
| 124 | 124 | 0.344 |
| 125 | 125 | 0.518 |
| 126 | 126 | 0.0937 |
| 127 | 127 | 0.747 |
| 128 | 128 | 0.888 |
| 129 | 129 | 0.539 |
| 13 | 13 | 0.0732 |
| 130 | 130 | 0.814 |
| 131 | 131 | 0.768 |
| 132 | 132 | 0.0738 |
| 133 | 133 | 0.967 |
| 134 | 134 | 0.909 |
| 135 | 135 | 0.98 |
| 136 | 136 | 0.615 |
| 137 | 137 | 0.138 |
| 138 | 138 | 0.945 |
| 139 | 139 | 0.287 |
| 14 | 14 | 0.463 |
| 140 | 140 | 0.407 |
| 141 | 141 | 0.0342 |
| 142 | 142 | 0.534 |
| 143 | 143 | 0.419 |
| 144 | 144 | 0.996 |
| 145 | 145 | 0.288 |
| 146 | 146 | 0.328 |
| 147 | 147 | 0.1 |
| 148 | 148 | 0.524 |
| 149 | 149 | 0.119 |
| 15 | 15 | 0.149 |
| 150 | 150 | 0.684 |
| 151 | 151 | 0.646 |
| 152 | 152 | 0.425 |
| 153 | 153 | 0.451 |
| 154 | 154 | 0.898 |
| 155 | 155 | 0.113 |
| 156 | 156 | 0.297 |
| 157 | 157 | 0.151 |
| 158 | 158 | 0.0316 |
| 159 | 159 | 0.927 |
| 16 | 16 | 0.322 |
| 160 | 160 | 0.422 |
| 161 | 161 | 0.897 |
| 162 | 162 | 0.56 |
| 163 | 163 | 0.257 |
| 164 | 164 | 0.136 |
| 165 | 165 | 0.483 |
| 166 | 166 | 0.00165 |
| 167 | 167 | 0.548 |
| 168 | 168 | 0.304 |
| 169 | 169 | 0.169 |
| 17 | 17 | 0.769 |
| 18 | 18 | 0.758 |
| 19 | 19 | 0.0123 |
| 2 | 2 | 0.632 |
| 20 | 20 | 0.84 |
| 21 | 21 | 0.306 |
| 22 | 22 | 0.699 |
| 23 | 23 | 0.299 |
| 24 | 24 | 0.139 |
| 25 | 25 | 0.26 |
| 26 | 26 | 0.644 |
| 27 | 27 | 0.924 |
| 28 | 28 | 0.413 |
| 29 | 29 | 0.668 |
| 3 | 3 | 0.833 |
| 30 | 30 | 0.375 |
| 31 | 31 | 0.645 |
| 32 | 32 | 2.13357e-15 |
| 33 | 33 | 0.401 |
| 34 | 34 | 0.789 |
| 35 | 35 | 0.428 |
| 36 | 36 | 0.0692 |
| 37 | 37 | 0.802 |
| 38 | 38 | 0.281 |
| 39 | 39 | 0.305 |
| 4 | 4 | 0.209 |
| 40 | 40 | 0.113 |
| 41 | 41 | 0.215 |
| 42 | 42 | 0.724 |
| 43 | 43 | 0.741 |
| 44 | 44 | 0.922 |
| 45 | 45 | 0.774 |
| 46 | 46 | 0.79 |
| 47 | 47 | 0.408 |
| 48 | 48 | 0.675 |
| 49 | 49 | 0.591 |
| 5 | 5 | 0.807 |
| 50 | 50 | 0.601 |
| 51 | 51 | 0.452 |
| 52 | 52 | 0.981 |
| 53 | 53 | 0.368 |
| 54 | 54 | 0.694 |
| 55 | 55 | 0.0213 |
| 56 | 56 | 0.985 |
| 57 | 57 | 0.748 |
| 58 | 58 | 0.209 |
| 59 | 59 | 0.537 |
| 6 | 6 | 0.912 |
| 60 | 60 | 0.469 |
| 61 | 61 | 0.304 |
| 62 | 62 | 0.845 |
| 63 | 63 | 0.471 |
| 64 | 64 | 0.248 |
| 65 | 65 | 0.879 |
| 66 | 66 | 0.0657 |
| 67 | 67 | 0.984 |
| 68 | 68 | 0.932 |
| 69 | 69 | 0.993 |
| 7 | 7 | 0.118 |
| 70 | 70 | 0.643 |
| 71 | 71 | 0.333 |
| 72 | 72 | 0.225 |
| 73 | 73 | 0.421 |
| 74 | 74 | 0.439 |
| 75 | 75 | 0.261 |
| 76 | 76 | 0.743 |
| 77 | 77 | 0.073 |
| 78 | 78 | 0.265 |
| 79 | 79 | 0.0018 |
| 8 | 8 | 0.537 |
| 80 | 80 | 0.0565 |
| 81 | 81 | 0.594 |
| 82 | 82 | 0.186 |
| 83 | 83 | 0.324 |
| 84 | 84 | 0.328 |
| 85 | 85 | 0.33 |
| 86 | 86 | 0.279 |
| 87 | 87 | 0.318 |
| 88 | 88 | 0.145 |
| 89 | 89 | 0.273 |
| 9 | 9 | 0.718 |
| 90 | 90 | 0.914 |
| 91 | 91 | 0.839 |
| 92 | 92 | 0.35 |
| 93 | 93 | 0.683 |
| 94 | 94 | 0.385 |
| 95 | 95 | 0.381 |
| 96 | 96 | 0.595 |
| 97 | 97 | 0.509 |
| 98 | 98 | 0.0408 |
| 99 | 99 | 0.00231 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13819
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0200002 olfactory epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0200002 (olfactory epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
