FF:12199-129C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=RNA-Seq@SAMD00013689 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008052;DRR008924;DRZ000349;DRZ001734;DRZ011699;DRZ013084!RNA-Seq;DRX012343;DRR013791;DRZ002992; | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000025 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.55!352.25!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.44!277.53!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.42!263.29!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.22!165.45!POU2AF1;;chr2:100759037..100759058,-!p2@AFF3!2.09!122.75!AFF3;;chr6:391743..391759,+!p1@IRF4!2.09!122.75!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.05!111.19!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!238.39!BACH2;;chr2:231090433..231090469,+!p1@SP140!2.02!104.07!SP140;;chr2:231090471..231090504,+!p2@SP140!2.00!99.63!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.96!90.73!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.85!510.58!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.38!PLEK;;chr8:86099884..86099918,+!p4@E2F5!1.76!56.93!E2F5;;chr3:71355163..71355209,-!p5@FOXP1!1.72!71.16!FOXP1;;chr3:32023232..32023273,+!p1@ZNF860!1.69!66.71!ZNF860;;chr7:50344251..50344288,+!p3@IKZF1!1.69!48.03!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.59!IKZF1;;chr2:100758991..100759009,-!p3@AFF3!1.64!42.70!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!1.60!115.64!BCL11A;;chr6:91006575..91006602,-!p2@BACH2!1.60!56.93!BACH2;;chr19:16435625..16435682,+!p1@KLF2!1.55!1052.29!KLF2;;chr5:158526756..158526797,-!p3@EBF1!1.54!33.80!EBF1;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.13!IKZF3;;chr2:60781201..60781258,-!p3@BCL11A!1.46!27.57!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.44!39.14!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.91!ZBP1;;chr2:231090344..231090361,-!p3@SP110!1.41!24.91!SP110;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.24!HOPX;;chr4:185395633..185395651,-!p2@IRF2!1.35!33.80!IRF2;;chr7:50344289..50344323,+!p1@IKZF1!1.33!20.46!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.32!121.86!ELF1;;chr2:60778035..60778060,-!p4@BCL11A!1.31!23.13!BCL11A;;chr8:86089627..86089653,+!p3@E2F5!1.31!22.24!E2F5;;chr7:50348268..50348366,+!p4@IKZF1!1.31!19.57!IKZF1;;chr8:86089531..86089544,+!p7@E2F5!1.31!19.57!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.31!19.57!IKZF3;;chr5:88179017..88179046,-!p2@MEF2C!1.29!72.05!MEF2C;;chr10:94449703..94449718,+!p1@HHEX!1.28!68.49!HHEX;;chr1:25256756..25256774,-!p1@RUNX3!1.27!32.91!RUNX3;;chr2:100759060..100759073,-!p8@AFF3!1.27!17.79!AFF3;;chr19:42636586..42636607,-!p1@POU2F2!1.25!46.25!POU2F2;;chr18:52989031..52989079,-!p2@TCF4!1.25!39.14!TCF4;;chr17:38020516..38020544,-!p5@IKZF3!1.25!16.90!IKZF3;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.46!SATB1;;chr7:64838786..64838809,+!p2@ZNF92!1.23!89.84!ZNF92;;chr19:13213704..13213726,-!p3@LYL1!1.23!21.35!LYL1;;chr6:91006503..91006517,-!p3@BACH2!1.23!16.01!BACH2;;chr7:77469439..77469459,+!p6@PHTF2!1.23!16.01!PHTF2;;chr2:68592394..68592405,+!p2@PLEK!1.23!16.01!PLEK;;chr3:71409904..71409927,-!p46@FOXP1!1.23!16.01!FOXP1;;chr4:185395590..185395627,-!p3@IRF2!1.21!18.68!IRF2;;chr3:71631151..71631194,-!p15@FOXP1!1.21!16.90!FOXP1;;chr1:151319654..151319698,-!p2@RFX5!1.20!32.02!RFX5;;chr14:75988771..75988826,+!p1@BATF!1.20!19.57!BATF;;chr9:117150254..117150271,-!p1@AKNA!1.18!38.25!AKNA;;chr17:38020607..38020621,-!p9@IKZF3!1.18!14.23!IKZF3;;chr16:85936412..85936431,+!p2@IRF8!1.16!13.34!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.16!13.34!TBX21;;chr19:36204309..36204335,+!p1@ZBTB32!1.16!13.34!ZBTB32;;chr2:61108695..61108753,+!p1@REL!1.15!88.95!REL;;chr11:128563948..128564003,+!p1@FLI1!1.14!154.77!FLI1;;chrX:106960221..106960236,-!p3@TSC22D3!1.13!34.69!TSC22D3;;chr7:64126535..64126559,+!p2@ZNF107!1.13!26.69!ZNF107;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.45!PAX5;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.79!NFATC2;;chr4:81104895..81104920,+!p2@PRDM8!1.11!17.79!PRDM8;;chrX:106960180..106960197,-!p2@TSC22D3!1.10!44.48!TSC22D3;;chr19:19779619..19779670,+!p1@ZNF101!1.10!32.91!ZNF101;;chr10:94449675..94449694,+!p2@HHEX!1.10!31.13!HHEX;;chr14:69262947..69262986,-!p3@ZFP36L1!1.10!14.23!ZFP36L1;;chr3:18487057..18487105,-!p4@SATB1!1.10!11.56!SATB1;;chr19:58220517..58220583,-!p1@ZNF154!1.08!35.58!ZNF154;;chr9:3525727..3525828,-!p2@RFX3!1.07!27.57!RFX3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.67!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!1.07!10.67!ZNF727;;chr19:45579725..45579743,-!p1@ZNF296!1.06!48.03!ZNF296;;chr19:36391434..36391450,-!p1@NFKBID!1.05!20.46!NFKBID;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!271.30!TSC22D3;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.38!NFKB2;;chr10:94451574..94451587,+!p6@HHEX!1.03!9.78!HHEX;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.78!HSF5;;chr19:22193731..22193751,-!p1@ZNF208!1.03!9.78!ZNF208;;chrX:101186981..101187030,-!p1@ZMAT1!1.02!31.13!ZMAT1;;chr2:231084659..231084721,-!p1@SP110!1.00!211.70!SP110;;chr9:37027156..37027193,-!p4@PAX5!1.00!8.90!PAX5;;chr9:37003148..37003152,-!p5@PAX5!1.00!8.90!PAX5;;chr1:167298300..167298319,+!p2@POU2F1!1.00!8.90!POU2F1;;chr7:77428066..77428132,+!p2@PHTF2!0.99!58.71!PHTF2;;chr6:144385698..144385742,-!p2@PLAGL1!0.99!10.67!PLAGL1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.59!ZNF737;;chr11:128392273..128392308,-!p2@ETS1!0.97!36.47!ETS1;;chrX:56258844..56258882,+!p1@KLF8!0.97!11.56!KLF8;;chr2:61108650..61108687,+!p2@REL!0.96!40.92!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.96!34.69!MBNL3;;chr14:64971288..64971316,-!p2@ZBTB25!0.96!25.80!ZBTB25;;chr21:36421535..36421610,-!p2@RUNX1!0.95!29.35!RUNX1;;chr16:3313791..3313834,+!p2@ZNF263!0.95!17.79!ZNF263;;chr17:38020481..38020506,-!p7@IKZF3!0.95!8.01!IKZF3;;chr11:47400062..47400077,-!p2@SPI1!0.95!8.01!SPI1;;chr2:100759076..100759088,-!p10@AFF3!0.95!8.01!AFF3;;chr7:64126503..64126528,+!p1@ZNF107!0.94!56.04!ZNF107;;chr5:88179195..88179224,-!p3@MEF2C!0.94!12.45!MEF2C;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.29!ZEB2;;chr11:128392085..128392232,-!p1@ETS1!0.91!252.62!ETS1;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.15!FOXP1;;chr3:71630844..71630862,-!p40@FOXP1!0.91!7.12!FOXP1;;chr5:88120151..88120177,-!p6@MEF2C!0.91!7.12!MEF2C;;chr17:37934188..37934202,-!p8@IKZF3!0.91!7.12!IKZF3;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.12!LYL1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.78!IRF2;;chr2:208031542..208031595,-!p2@KLF7!0.89!50.70!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!0.89!8.01!SNAI3;;chr1:158979686..158979745,+!p1@IFI16!0.87!224.16!IFI16;;chr19:11959532..11959593,+!p1@ZNF439!0.87!25.80!ZNF439;;chr8:125985531..125985571,+!p1@ZNF572!0.87!13.34!ZNF572;;chr18:42260030..42260055,+!p3@SETBP1!0.87!8.01!SETBP1;;chr19:11877838..11877915,+!p1@ZNF441!0.86!20.46!ZNF441;;chr6:41700616..41700664,-!p8@TFEB!0.86!6.23!TFEB;;chr7:150102756..150102772,+!p5@ZNF775!0.86!6.23!ZNF775;;chr3:71631248..71631268,-!p26@FOXP1!0.86!6.23!FOXP1;;chr4:57522476..57522500,-!p7@HOPX!0.86!6.23!HOPX;;chr19:58694742..58694800,+!p2@ZNF274!0.85!25.80!ZNF274;;chr2:231280954..231280965,+!p2@SP100!0.85!11.56!SP100;;chr19:37997297..37997362,+!p3@ZNF793!0.84!9.78!ZNF793;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.78!TSC22D3;;chr14:74226961..74227020,-!p1@C14orf43!0.83!40.92!C14orf43;;chr8:123793860..123793921,+!p2@ZHX2!0.83!16.90!ZHX2;;chr16:30583169..30583200,-!p2@ZNF688!0.83!8.90!ZNF688;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.90!ZNF540;;chr19:19976683..19976709,+!p1@ZNF253!0.82!26.69!ZNF253;;chr7:21467674..21467727,+!p1@SP4!0.82!24.02!SP4;;chr2:178128250..178128293,-!p6@NFE2L2!0.82!15.12!NFE2L2;;chr6:157098579..157098634,+!p4@ARID1B!0.82!13.34!ARID1B;;chr18:52989081..52989117,-!p7@TCF4!0.82!8.90!TCF4;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.38!FOXO1;;chr7:64838754..64838778,+!p1@ZNF92!0.81!56.93!ZNF92;;chr1:14026671..14026705,+!p2@PRDM2!0.81!35.58!PRDM2;;chr19:22235279..22235301,+!p1@ZNF257!0.81!10.67!ZNF257;;chr7:128577972..128578047,+!p1@IRF5!0.81!8.90!IRF5;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.23!ZNF835;;chr3:129158768..129158819,-!p1@MBD4!0.80!88.95!MBD4;;chr19:9546177..9546224,-!p1@ZNF266!0.80!40.92!ZNF266;;chr19:58238958..58239000,-!p1@ZNF671!0.80!23.13!ZNF671;;chr1:27023752..27023799,+!p4@ARID1A!0.80!7.12!ARID1A;;chr4:57522166..57522260,-!p2@HOPX!0.80!6.23!HOPX;;chr5:158526709..158526741,-!p7@EBF1!0.80!5.34!EBF1;;chr8:86089498..86089519,+!p6@E2F5!0.80!5.34!E2F5;;chr14:69263043..69263069,-!p8@ZFP36L1!0.80!5.34!ZFP36L1;;chr9:37034469..37034474,-!p1@PAX5!0.80!5.34!PAX5;;chr2:231191875..231191918,+!p1@SP140L!0.79!55.15!SP140L;;chr16:68119324..68119364,+!p1@NFATC3!0.79!24.91!NFATC3;;chr9:117160738..117160782,-!p2@AKNA!0.79!23.13!AKNA;;chrX:56258811..56258838,+!p2@KLF8!0.79!7.12!KLF8;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.57!ZBTB20;;chr1:45805693..45805718,+!p3@TOE1!0.78!11.56!TOE1;;chr19:12075844..12075880,+!p3@ZNF763!0.78!8.90!ZNF763;;chr7:64363638..64363667,+!p1@ZNF273!0.77!26.69!ZNF273;;chr20:46130672..46130686,+!p2@NCOA3!0.77!24.02!NCOA3;;chr4:81104865..81104886,+!p6@PRDM8!0.77!5.34!PRDM8;;chr6:130339710..130339745,+!p1@L3MBTL3!0.76!41.81!L3MBTL3;;chr1:91487836..91487854,-!p3@ZNF644!0.76!11.56!ZNF644;;chr6:43337124..43337144,-!p4@ZNF318!0.76!7.12!ZNF318;;chr18:52989001..52989030,-!p10@TCF4!0.76!5.34!TCF4;;chr17:4981745..4981810,+!p1@ZFP3!0.75!24.91!ZFP3;;chr10:35416142..35416169,+!p3@CREM!0.75!13.34!CREM;;chr14:64970670..64970712,-!p3@ZBTB25!0.75!10.67!ZBTB25;;chr11:67007548..67007610,+!p3@KDM2A!0.74!37.36!KDM2A;;chr19:58144529..58144579,+!p1@ZNF211!0.74!26.69!ZNF211;;chr19:53289995..53290050,-!p1@ZNF600!0.74!20.46!ZNF600;;chr1:8763463..8763499,-!p6@RERE!0.74!13.34!RERE;;chr18:5295679..5295734,-!p2@ZFP161!0.74!10.67!ZFP161;;chr16:85936539..85936562,+!p3@IRF8!0.74!4.45!IRF8;;chr13:41593405..41593416,-!p9@ELF1!0.74!4.45!ELF1;;chr6:41691289..41691312,-!p9@TFEB!0.74!4.45!TFEB;;chr6:41701581..41701613,-!p2@TFEB!0.74!4.45!TFEB;;chr7:108209925..108209941,-!p2@THAP5!0.74!4.45!THAP5;;chr7:50344144..50344157,+!p6@IKZF1!0.74!4.45!IKZF1;;chr3:114173720..114173794,-!p6@ZBTB20!0.74!4.45!ZBTB20;;chr3:71353892..71353928,-!p31@FOXP1!0.74!4.45!FOXP1;;chr3:71631217..71631234,-!p33@FOXP1!0.74!4.45!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.45!HOPX;;chr5:131826457..131826514,-!p1@IRF1!0.73!191.24!IRF1;;chr6:43337180..43337244,-!p1@ZNF318!0.73!18.68!ZNF318;;chr16:71918033..71918101,-!p1@ZNF821!0.73!17.79!ZNF821;;chr10:43932296..43932360,+!p1@ZNF487P!0.7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| |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.55!352.25!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.44!277.53!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.42!263.29!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.22!165.45!POU2AF1;;chr2:100759037..100759058,-!p2@AFF3!2.09!122.75!AFF3;;chr6:391743..391759,+!p1@IRF4!2.09!122.75!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.05!111.19!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!238.39!BACH2;;chr2:231090433..231090469,+!p1@SP140!2.02!104.07!SP140;;chr2:231090471..231090504,+!p2@SP140!2.00!99.63!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.96!90.73!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.85!510.58!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.38!PLEK;;chr8:86099884..86099918,+!p4@E2F5!1.76!56.93!E2F5;;chr3:71355163..71355209,-!p5@FOXP1!1.72!71.16!FOXP1;;chr3:32023232..32023273,+!p1@ZNF860!1.69!66.71!ZNF860;;chr7:50344251..50344288,+!p3@IKZF1!1.69!48.03!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.59!IKZF1;;chr2:100758991..100759009,-!p3@AFF3!1.64!42.70!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!1.60!115.64!BCL11A;;chr6:91006575..91006602,-!p2@BACH2!1.60!56.93!BACH2;;chr19:16435625..16435682,+!p1@KLF2!1.55!1052.29!KLF2;;chr5:158526756..158526797,-!p3@EBF1!1.54!33.80!EBF1;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.13!IKZF3;;chr2:60781201..60781258,-!p3@BCL11A!1.46!27.57!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.44!39.14!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.91!ZBP1;;chr2:231090344..231090361,-!p3@SP110!1.41!24.91!SP110;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.24!HOPX;;chr4:185395633..185395651,-!p2@IRF2!1.35!33.80!IRF2;;chr7:50344289..50344323,+!p1@IKZF1!1.33!20.46!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.32!121.86!ELF1;;chr2:60778035..60778060,-!p4@BCL11A!1.31!23.13!BCL11A;;chr8:86089627..86089653,+!p3@E2F5!1.31!22.24!E2F5;;chr7:50348268..50348366,+!p4@IKZF1!1.31!19.57!IKZF1;;chr8:86089531..86089544,+!p7@E2F5!1.31!19.57!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.31!19.57!IKZF3;;chr5:88179017..88179046,-!p2@MEF2C!1.29!72.05!MEF2C;;chr10:94449703..94449718,+!p1@HHEX!1.28!68.49!HHEX;;chr1:25256756..25256774,-!p1@RUNX3!1.27!32.91!RUNX3;;chr2:100759060..100759073,-!p8@AFF3!1.27!17.79!AFF3;;chr19:42636586..42636607,-!p1@POU2F2!1.25!46.25!POU2F2;;chr18:52989031..52989079,-!p2@TCF4!1.25!39.14!TCF4;;chr17:38020516..38020544,-!p5@IKZF3!1.25!16.90!IKZF3;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.46!SATB1;;chr7:64838786..64838809,+!p2@ZNF92!1.23!89.84!ZNF92;;chr19:13213704..13213726,-!p3@LYL1!1.23!21.35!LYL1;;chr6:91006503..91006517,-!p3@BACH2!1.23!16.01!BACH2;;chr7:77469439..77469459,+!p6@PHTF2!1.23!16.01!PHTF2;;chr2:68592394..68592405,+!p2@PLEK!1.23!16.01!PLEK;;chr3:71409904..71409927,-!p46@FOXP1!1.23!16.01!FOXP1;;chr4:185395590..185395627,-!p3@IRF2!1.21!18.68!IRF2;;chr3:71631151..71631194,-!p15@FOXP1!1.21!16.90!FOXP1;;chr1:151319654..151319698,-!p2@RFX5!1.20!32.02!RFX5;;chr14:75988771..75988826,+!p1@BATF!1.20!19.57!BATF;;chr9:117150254..117150271,-!p1@AKNA!1.18!38.25!AKNA;;chr17:38020607..38020621,-!p9@IKZF3!1.18!14.23!IKZF3;;chr16:85936412..85936431,+!p2@IRF8!1.16!13.34!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.16!13.34!TBX21;;chr19:36204309..36204335,+!p1@ZBTB32!1.16!13.34!ZBTB32;;chr2:61108695..61108753,+!p1@REL!1.15!88.95!REL;;chr11:128563948..128564003,+!p1@FLI1!1.14!154.77!FLI1;;chrX:106960221..106960236,-!p3@TSC22D3!1.13!34.69!TSC22D3;;chr7:64126535..64126559,+!p2@ZNF107!1.13!26.69!ZNF107;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.45!PAX5;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.79!NFATC2;;chr4:81104895..81104920,+!p2@PRDM8!1.11!17.79!PRDM8;;chrX:106960180..106960197,-!p2@TSC22D3!1.10!44.48!TSC22D3;;chr19:19779619..19779670,+!p1@ZNF101!1.10!32.91!ZNF101;;chr10:94449675..94449694,+!p2@HHEX!1.10!31.13!HHEX;;chr14:69262947..69262986,-!p3@ZFP36L1!1.10!14.23!ZFP36L1;;chr3:18487057..18487105,-!p4@SATB1!1.10!11.56!SATB1;;chr19:58220517..58220583,-!p1@ZNF154!1.08!35.58!ZNF154;;chr9:3525727..3525828,-!p2@RFX3!1.07!27.57!RFX3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.67!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!1.07!10.67!ZNF727;;chr19:45579725..45579743,-!p1@ZNF296!1.06!48.03!ZNF296;;chr19:36391434..36391450,-!p1@NFKBID!1.05!20.46!NFKBID;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!271.30!TSC22D3;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.38!NFKB2;;chr10:94451574..94451587,+!p6@HHEX!1.03!9.78!HHEX;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.78!HSF5;;chr19:22193731..22193751,-!p1@ZNF208!1.03!9.78!ZNF208;;chrX:101186981..101187030,-!p1@ZMAT1!1.02!31.13!ZMAT1;;chr2:231084659..231084721,-!p1@SP110!1.00!211.70!SP110;;chr9:37027156..37027193,-!p4@PAX5!1.00!8.90!PAX5;;chr9:37003148..37003152,-!p5@PAX5!1.00!8.90!PAX5;;chr1:167298300..167298319,+!p2@POU2F1!1.00!8.90!POU2F1;;chr7:77428066..77428132,+!p2@PHTF2!0.99!58.71!PHTF2;;chr6:144385698..144385742,-!p2@PLAGL1!0.99!10.67!PLAGL1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.59!ZNF737;;chr11:128392273..128392308,-!p2@ETS1!0.97!36.47!ETS1;;chrX:56258844..56258882,+!p1@KLF8!0.97!11.56!KLF8;;chr2:61108650..61108687,+!p2@REL!0.96!40.92!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.96!34.69!MBNL3;;chr14:64971288..64971316,-!p2@ZBTB25!0.96!25.80!ZBTB25;;chr21:36421535..36421610,-!p2@RUNX1!0.95!29.35!RUNX1;;chr16:3313791..3313834,+!p2@ZNF263!0.95!17.79!ZNF263;;chr17:38020481..38020506,-!p7@IKZF3!0.95!8.01!IKZF3;;chr11:47400062..47400077,-!p2@SPI1!0.95!8.01!SPI1;;chr2:100759076..100759088,-!p10@AFF3!0.95!8.01!AFF3;;chr7:64126503..64126528,+!p1@ZNF107!0.94!56.04!ZNF107;;chr5:88179195..88179224,-!p3@MEF2C!0.94!12.45!MEF2C;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.29!ZEB2;;chr11:128392085..128392232,-!p1@ETS1!0.91!252.62!ETS1;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.15!FOXP1;;chr3:71630844..71630862,-!p40@FOXP1!0.91!7.12!FOXP1;;chr5:88120151..88120177,-!p6@MEF2C!0.91!7.12!MEF2C;;chr17:37934188..37934202,-!p8@IKZF3!0.91!7.12!IKZF3;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.12!LYL1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.78!IRF2;;chr2:208031542..208031595,-!p2@KLF7!0.89!50.70!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!0.89!8.01!SNAI3;;chr1:158979686..158979745,+!p1@IFI16!0.87!224.16!IFI16;;chr19:11959532..11959593,+!p1@ZNF439!0.87!25.80!ZNF439;;chr8:125985531..125985571,+!p1@ZNF572!0.87!13.34!ZNF572;;chr18:42260030..42260055,+!p3@SETBP1!0.87!8.01!SETBP1;;chr19:11877838..11877915,+!p1@ZNF441!0.86!20.46!ZNF441;;chr6:41700616..41700664,-!p8@TFEB!0.86!6.23!TFEB;;chr7:150102756..150102772,+!p5@ZNF775!0.86!6.23!ZNF775;;chr3:71631248..71631268,-!p26@FOXP1!0.86!6.23!FOXP1;;chr4:57522476..57522500,-!p7@HOPX!0.86!6.23!HOPX;;chr19:58694742..58694800,+!p2@ZNF274!0.85!25.80!ZNF274;;chr2:231280954..231280965,+!p2@SP100!0.85!11.56!SP100;;chr19:37997297..37997362,+!p3@ZNF793!0.84!9.78!ZNF793;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.78!TSC22D3;;chr14:74226961..74227020,-!p1@C14orf43!0.83!40.92!C14orf43;;chr8:123793860..123793921,+!p2@ZHX2!0.83!16.90!ZHX2;;chr16:30583169..30583200,-!p2@ZNF688!0.83!8.90!ZNF688;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.90!ZNF540;;chr19:19976683..19976709,+!p1@ZNF253!0.82!26.69!ZNF253;;chr7:21467674..21467727,+!p1@SP4!0.82!24.02!SP4;;chr2:178128250..178128293,-!p6@NFE2L2!0.82!15.12!NFE2L2;;chr6:157098579..157098634,+!p4@ARID1B!0.82!13.34!ARID1B;;chr18:52989081..52989117,-!p7@TCF4!0.82!8.90!TCF4;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.38!FOXO1;;chr7:64838754..64838778,+!p1@ZNF92!0.81!56.93!ZNF92;;chr1:14026671..14026705,+!p2@PRDM2!0.81!35.58!PRDM2;;chr19:22235279..22235301,+!p1@ZNF257!0.81!10.67!ZNF257;;chr7:128577972..128578047,+!p1@IRF5!0.81!8.90!IRF5;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.23!ZNF835;;chr3:129158768..129158819,-!p1@MBD4!0.80!88.95!MBD4;;chr19:9546177..9546224,-!p1@ZNF266!0.80!40.92!ZNF266;;chr19:58238958..58239000,-!p1@ZNF671!0.80!23.13!ZNF671;;chr1:27023752..27023799,+!p4@ARID1A!0.80!7.12!ARID1A;;chr4:57522166..57522260,-!p2@HOPX!0.80!6.23!HOPX;;chr5:158526709..158526741,-!p7@EBF1!0.80!5.34!EBF1;;chr8:86089498..86089519,+!p6@E2F5!0.80!5.34!E2F5;;chr14:69263043..69263069,-!p8@ZFP36L1!0.80!5.34!ZFP36L1;;chr9:37034469..37034474,-!p1@PAX5!0.80!5.34!PAX5;;chr2:231191875..231191918,+!p1@SP140L!0.79!55.15!SP140L;;chr16:68119324..68119364,+!p1@NFATC3!0.79!24.91!NFATC3;;chr9:117160738..117160782,-!p2@AKNA!0.79!23.13!AKNA;;chrX:56258811..56258838,+!p2@KLF8!0.79!7.12!KLF8;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.57!ZBTB20;;chr1:45805693..45805718,+!p3@TOE1!0.78!11.56!TOE1;;chr19:12075844..12075880,+!p3@ZNF763!0.78!8.90!ZNF763;;chr7:64363638..64363667,+!p1@ZNF273!0.77!26.69!ZNF273;;chr20:46130672..46130686,+!p2@NCOA3!0.77!24.02!NCOA3;;chr4:81104865..81104886,+!p6@PRDM8!0.77!5.34!PRDM8;;chr6:130339710..130339745,+!p1@L3MBTL3!0.76!41.81!L3MBTL3;;chr1:91487836..91487854,-!p3@ZNF644!0.76!11.56!ZNF644;;chr6:43337124..43337144,-!p4@ZNF318!0.76!7.12!ZNF318;;chr18:52989001..52989030,-!p10@TCF4!0.76!5.34!TCF4;;chr17:4981745..4981810,+!p1@ZFP3!0.75!24.91!ZFP3;;chr10:35416142..35416169,+!p3@CREM!0.75!13.34!CREM;;chr14:64970670..64970712,-!p3@ZBTB25!0.75!10.67!ZBTB25;;chr11:67007548..67007610,+!p3@KDM2A!0.74!37.36!KDM2A;;chr19:58144529..58144579,+!p1@ZNF211!0.74!26.69!ZNF211;;chr19:53289995..53290050,-!p1@ZNF600!0.74!20.46!ZNF600;;chr1:8763463..8763499,-!p6@RERE!0.74!13.34!RERE;;chr18:5295679..5295734,-!p2@ZFP161!0.74!10.67!ZFP161;;chr16:85936539..85936562,+!p3@IRF8!0.74!4.45!IRF8;;chr13:41593405..41593416,-!p9@ELF1!0.74!4.45!ELF1;;chr6:41691289..41691312,-!p9@TFEB!0.74!4.45!TFEB;;chr6:41701581..41701613,-!p2@TFEB!0.74!4.45!TFEB;;chr7:108209925..108209941,-!p2@THAP5!0.74!4.45!THAP5;;chr7:50344144..50344157,+!p6@IKZF1!0.74!4.45!IKZF1;;chr3:114173720..114173794,-!p6@ZBTB20!0.74!4.45!ZBTB20;;chr3:71353892..71353928,-!p31@FOXP1!0.74!4.45!FOXP1;;chr3:71631217..71631234,-!p33@FOXP1!0.74!4.45!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.45!HOPX;;chr5:131826457..131826514,-!p1@IRF1!0.73!191.24!IRF1;;chr6:43337180..43337244,-!p1@ZNF318!0.73!18.68!ZNF318;;chr16:71918033..71918101,-!p1@ZNF821!0.73!17.79!ZNF821;;chr10:43932296..43932360,+!p1@ZNF487P!0.7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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12199-129C3 | |id=FF:12199-129C3 | ||
|is_a=EFO:0002091;;FF:0000025;;FF:0000210 | |is_a=EFO:0002091;;FF:0000025;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12181!RDhi10009 | |||
|library_id_phase_based=2:CNhs12181 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12199 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12199 | |||
|name=CD19+ B Cells (pluriselect), donor090309, donation3 | |name=CD19+ B Cells (pluriselect), donor090309, donation3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12181,LSID975,release011,COMPLETED | |profile_hcage=CNhs12181,LSID975,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,1.4134047049206,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0.276349023213624,0,0,0,0,0,0,0.276349023213624,0,0,-0.153323010348428,0,0,0,0,0.564491809947528,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.145899716966013,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.039450128415069,0.276349023213624,-0.0969923612426051,0,0,0.179005396000527,0,0,0,0,0,0,0,0,0.276349023213624,0,0.276349023213624,0,0,0,0,0,0,0,0,0,0,0,0,-0.0204982622745056,-0.147343822857719,0,0,0,-0.203649963310071,-0.211197402695869,0,0,0.138174511606812,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0418009176843512,0,0,0,-0.208815630292662,-0.366947622958601,0,0,0,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 58: | Line 79: | ||
|rna_weight_ug=1.61136 | |rna_weight_ug=1.61136 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 101: | ||
|top_motifs=POU2F1..3:3.15415524499;POU5F1:3.03083153519;FOXA2:2.28424296623;PBX1:2.1554327244;DMAP1_NCOR{1,2}_SMARC:1.9628483337;FOX{F1,F2,J1}:1.90034535853;ELF1,2,4:1.83808605138;TLX2:1.81230028225;FOXO1,3,4:1.69791079372;FOX{I1,J2}:1.61659435082;IRF1,2:1.4553960099;FOX{D1,D2}:1.4129457342;SPI1:1.40439693585;ELK1,4_GABP{A,B1}:1.371730431;AIRE:1.19411139847;RUNX1..3:1.1582929281;STAT1,3:1.15246291619;PDX1:1.11318207724;ETS1,2:1.1090040602;SPIB:1.10296799819;NFKB1_REL_RELA:1.06300995019;BPTF:1.03643926508;NKX2-2,8:1.02265293207;ALX1:0.970598737823;YY1:0.968522335579;CDX1,2,4:0.96735818702;FOXN1:0.946475603059;LMO2:0.896328956236;RFX2..5_RFXANK_RFXAP:0.886679284561;NANOG{mouse}:0.876586629225;NKX6-1,2:0.8734248012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.768812501655;MYOD1:0.748407062999;FOXP3:0.746018160917;ESR1:0.731471884258;CRX:0.727301693801;ZEB1:0.720891096841;OCT4_SOX2{dimer}:0.71089968787;IRF7:0.708158558151;CREB1:0.612780906717;BREu{core}:0.572151454123;VSX1,2:0.557874242177;PAX6:0.542514472533;GATA6:0.475899720168;TGIF1:0.45972783295;LEF1_TCF7_TCF7L1,2:0.437540457201;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.430830171932;RORA:0.412553295018;MYB:0.399708491839;NRF1:0.357358209008;FOXP1:0.352714429205;NHLH1,2:0.350457279407;CUX2:0.312040430908;MEF2{A,B,C,D}:0.307591801986;FOXL1:0.301142260044;SNAI1..3:0.279178444197;ATF5_CREB3:0.252342470864;SREBF1,2:0.247876138004;SOX{8,9,10}:0.231461325738;PAX2:0.229593751351;ATF2:0.211672584219;HMX1:0.194211200634;PAX3,7:0.17672507861;ZNF143:0.175050499538;HAND1,2:0.166679507407;SOX5:0.146003214035;HES1:0.10946259045;EP300:0.0946142288144;DBP:0.0939411030864;HBP1_HMGB_SSRP1_UBTF:0.0924412839811;IKZF2:0.0900453991059;ZBTB16:0.0633289934759;ZNF148:0.0449981388704;GLI1..3:0.0367637044152;NKX2-1,4:0.0351555159058;AHR_ARNT_ARNT2:0.00957899623138;STAT5{A,B}:-0.00234311134136;EVI1:-0.0149135647218;TAL1_TCF{3,4,12}:-0.0153386347177;PRRX1,2:-0.0165930970532;T:-0.0182420034682;FOXQ1:-0.0375815536037;TEF:-0.0418751193857;ZFP161:-0.0773446143255;NFIL3:-0.104516444722;ATF4:-0.107925957297;ADNP_IRX_SIX_ZHX:-0.109228333651;NFIX:-0.14055473409;NANOG:-0.142707861805;NFY{A,B,C}:-0.160212020637;CDC5L:-0.166753895092;TOPORS:-0.168534403495;ALX4:-0.182285777618;NR5A1,2:-0.182996560825;POU1F1:-0.201917017688;EBF1:-0.210476878289;HOX{A4,D4}:-0.24825880962;RBPJ:-0.256240150464;HIF1A:-0.263396018738;NFATC1..3:-0.269829822659;HNF4A_NR2F1,2:-0.273886865917;PRDM1:-0.277973575498;E2F1..5:-0.286196820592;AR:-0.369493726239;CEBPA,B_DDIT3:-0.371565360418;GFI1:-0.399842019112;MYFfamily:-0.405881097788;NR6A1:-0.431100720422;SPZ1:-0.447195911256;ARID5B:-0.452125131007;HNF1A:-0.454729044743;TFCP2:-0.458649033344;NKX2-3_NKX2-5:-0.46078536413;RXRA_VDR{dimer}:-0.47057523048;FOSL2:-0.502531014403;RFX1:-0.544800257436;SMAD1..7,9:-0.569213108158;ESRRA:-0.582406554909;FOS_FOS{B,L1}_JUN{B,D}:-0.60003226961;TFAP4:-0.601687443032;NKX3-1:-0.606143971066;HOXA9_MEIS1:-0.625638885582;HOX{A6,A7,B6,B7}:-0.642182706136;HMGA1,2:-0.647181416801;PPARG:-0.649696130941;MAFB:-0.661585668692;bHLH_family:-0.663856172947;JUN:-0.683483253845;ZNF238:-0.691128428751;EN1,2:-0.699381679213;SOX2:-0.704416142117;ATF6:-0.735750964701;HOX{A5,B5}:-0.736971600229;NKX3-2:-0.748451753147;BACH2:-0.791554574984;ONECUT1,2:-0.802758623244;PAX4:-0.818014736743;MYBL2:-0.822734359244;SOX17:-0.850785123966;NR1H4:-0.851814183526;SRF:-0.892841530367;NFE2:-0.893663119594;HLF:-0.895786391057;EGR1..3:-0.924404640185;PATZ1:-0.927066256766;ZNF423:-0.982398794291;MED-1{core}:-0.989688075963;REST:-1.014672372;ZNF384:-1.02394163334;NR3C1:-1.02655798973;RREB1:-1.03724343601;MZF1:-1.04905455433;TP53:-1.05117911136;GFI1B:-1.06947658843;RXR{A,B,G}:-1.12086867348;NFE2L2:-1.12472588301;TBP:-1.14386686539;TBX4,5:-1.15162612345;GCM1,2:-1.19876948537;LHX3,4:-1.22040066198;PAX8:-1.24631345585;POU6F1:-1.25627752671;MAZ:-1.25642069462;XCPE1{core}:-1.25647814197;MTF1:-1.27166136918;FOXD3:-1.29116197224;STAT2,4,6:-1.30925533241;UFEwm:-1.31938225297;XBP1:-1.32276761506;MTE{core}:-1.33372371022;PITX1..3:-1.33383722307;FOXM1:-1.33549539685;GATA4:-1.3438826298;GZF1:-1.36801410089;HIC1:-1.4613317828;HSF1,2:-1.49110324234;TFAP2B:-1.49675058242;KLF4:-1.5180246293;TFAP2{A,C}:-1.540584431;TEAD1:-1.55298349298;GTF2I:-1.57059083662;NFE2L1:-1.58270054735;SP1:-1.63135405573;ZIC1..3:-1.69276047684;ZBTB6:-1.70585889089;TLX1..3_NFIC{dimer}:-1.78333511531;PAX5:-1.79887954097;TFDP1:-1.83153083379;GTF2A1,2:-1.91318314258;IKZF1:-1.93069939381;POU3F1..4:-2.0848626111;PAX1,9:-2.1005887767 | |top_motifs=POU2F1..3:3.15415524499;POU5F1:3.03083153519;FOXA2:2.28424296623;PBX1:2.1554327244;DMAP1_NCOR{1,2}_SMARC:1.9628483337;FOX{F1,F2,J1}:1.90034535853;ELF1,2,4:1.83808605138;TLX2:1.81230028225;FOXO1,3,4:1.69791079372;FOX{I1,J2}:1.61659435082;IRF1,2:1.4553960099;FOX{D1,D2}:1.4129457342;SPI1:1.40439693585;ELK1,4_GABP{A,B1}:1.371730431;AIRE:1.19411139847;RUNX1..3:1.1582929281;STAT1,3:1.15246291619;PDX1:1.11318207724;ETS1,2:1.1090040602;SPIB:1.10296799819;NFKB1_REL_RELA:1.06300995019;BPTF:1.03643926508;NKX2-2,8:1.02265293207;ALX1:0.970598737823;YY1:0.968522335579;CDX1,2,4:0.96735818702;FOXN1:0.946475603059;LMO2:0.896328956236;RFX2..5_RFXANK_RFXAP:0.886679284561;NANOG{mouse}:0.876586629225;NKX6-1,2:0.8734248012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.768812501655;MYOD1:0.748407062999;FOXP3:0.746018160917;ESR1:0.731471884258;CRX:0.727301693801;ZEB1:0.720891096841;OCT4_SOX2{dimer}:0.71089968787;IRF7:0.708158558151;CREB1:0.612780906717;BREu{core}:0.572151454123;VSX1,2:0.557874242177;PAX6:0.542514472533;GATA6:0.475899720168;TGIF1:0.45972783295;LEF1_TCF7_TCF7L1,2:0.437540457201;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.430830171932;RORA:0.412553295018;MYB:0.399708491839;NRF1:0.357358209008;FOXP1:0.352714429205;NHLH1,2:0.350457279407;CUX2:0.312040430908;MEF2{A,B,C,D}:0.307591801986;FOXL1:0.301142260044;SNAI1..3:0.279178444197;ATF5_CREB3:0.252342470864;SREBF1,2:0.247876138004;SOX{8,9,10}:0.231461325738;PAX2:0.229593751351;ATF2:0.211672584219;HMX1:0.194211200634;PAX3,7:0.17672507861;ZNF143:0.175050499538;HAND1,2:0.166679507407;SOX5:0.146003214035;HES1:0.10946259045;EP300:0.0946142288144;DBP:0.0939411030864;HBP1_HMGB_SSRP1_UBTF:0.0924412839811;IKZF2:0.0900453991059;ZBTB16:0.0633289934759;ZNF148:0.0449981388704;GLI1..3:0.0367637044152;NKX2-1,4:0.0351555159058;AHR_ARNT_ARNT2:0.00957899623138;STAT5{A,B}:-0.00234311134136;EVI1:-0.0149135647218;TAL1_TCF{3,4,12}:-0.0153386347177;PRRX1,2:-0.0165930970532;T:-0.0182420034682;FOXQ1:-0.0375815536037;TEF:-0.0418751193857;ZFP161:-0.0773446143255;NFIL3:-0.104516444722;ATF4:-0.107925957297;ADNP_IRX_SIX_ZHX:-0.109228333651;NFIX:-0.14055473409;NANOG:-0.142707861805;NFY{A,B,C}:-0.160212020637;CDC5L:-0.166753895092;TOPORS:-0.168534403495;ALX4:-0.182285777618;NR5A1,2:-0.182996560825;POU1F1:-0.201917017688;EBF1:-0.210476878289;HOX{A4,D4}:-0.24825880962;RBPJ:-0.256240150464;HIF1A:-0.263396018738;NFATC1..3:-0.269829822659;HNF4A_NR2F1,2:-0.273886865917;PRDM1:-0.277973575498;E2F1..5:-0.286196820592;AR:-0.369493726239;CEBPA,B_DDIT3:-0.371565360418;GFI1:-0.399842019112;MYFfamily:-0.405881097788;NR6A1:-0.431100720422;SPZ1:-0.447195911256;ARID5B:-0.452125131007;HNF1A:-0.454729044743;TFCP2:-0.458649033344;NKX2-3_NKX2-5:-0.46078536413;RXRA_VDR{dimer}:-0.47057523048;FOSL2:-0.502531014403;RFX1:-0.544800257436;SMAD1..7,9:-0.569213108158;ESRRA:-0.582406554909;FOS_FOS{B,L1}_JUN{B,D}:-0.60003226961;TFAP4:-0.601687443032;NKX3-1:-0.606143971066;HOXA9_MEIS1:-0.625638885582;HOX{A6,A7,B6,B7}:-0.642182706136;HMGA1,2:-0.647181416801;PPARG:-0.649696130941;MAFB:-0.661585668692;bHLH_family:-0.663856172947;JUN:-0.683483253845;ZNF238:-0.691128428751;EN1,2:-0.699381679213;SOX2:-0.704416142117;ATF6:-0.735750964701;HOX{A5,B5}:-0.736971600229;NKX3-2:-0.748451753147;BACH2:-0.791554574984;ONECUT1,2:-0.802758623244;PAX4:-0.818014736743;MYBL2:-0.822734359244;SOX17:-0.850785123966;NR1H4:-0.851814183526;SRF:-0.892841530367;NFE2:-0.893663119594;HLF:-0.895786391057;EGR1..3:-0.924404640185;PATZ1:-0.927066256766;ZNF423:-0.982398794291;MED-1{core}:-0.989688075963;REST:-1.014672372;ZNF384:-1.02394163334;NR3C1:-1.02655798973;RREB1:-1.03724343601;MZF1:-1.04905455433;TP53:-1.05117911136;GFI1B:-1.06947658843;RXR{A,B,G}:-1.12086867348;NFE2L2:-1.12472588301;TBP:-1.14386686539;TBX4,5:-1.15162612345;GCM1,2:-1.19876948537;LHX3,4:-1.22040066198;PAX8:-1.24631345585;POU6F1:-1.25627752671;MAZ:-1.25642069462;XCPE1{core}:-1.25647814197;MTF1:-1.27166136918;FOXD3:-1.29116197224;STAT2,4,6:-1.30925533241;UFEwm:-1.31938225297;XBP1:-1.32276761506;MTE{core}:-1.33372371022;PITX1..3:-1.33383722307;FOXM1:-1.33549539685;GATA4:-1.3438826298;GZF1:-1.36801410089;HIC1:-1.4613317828;HSF1,2:-1.49110324234;TFAP2B:-1.49675058242;KLF4:-1.5180246293;TFAP2{A,C}:-1.540584431;TEAD1:-1.55298349298;GTF2I:-1.57059083662;NFE2L1:-1.58270054735;SP1:-1.63135405573;ZIC1..3:-1.69276047684;ZBTB6:-1.70585889089;TLX1..3_NFIC{dimer}:-1.78333511531;PAX5:-1.79887954097;TFDP1:-1.83153083379;GTF2A1,2:-1.91318314258;IKZF1:-1.93069939381;POU3F1..4:-2.0848626111;PAX1,9:-2.1005887767 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12199-129C3;search_select_hide=table117:FF:12199-129C3 | |||
}} | }} |
Latest revision as of 18:34, 4 June 2020
Name: | CD19+ B Cells (pluriselect), donor090309, donation3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12181,RDhi10009 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12181
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12181
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0921 |
10 | 10 | 0.0366 |
100 | 100 | 0.6 |
101 | 101 | 0.278 |
102 | 102 | 0.93 |
103 | 103 | 0.0434 |
104 | 104 | 0.111 |
105 | 105 | 0.322 |
106 | 106 | 0.834 |
107 | 107 | 0.384 |
108 | 108 | 0.32 |
109 | 109 | 0.0647 |
11 | 11 | 0.0808 |
110 | 110 | 0.149 |
111 | 111 | 0.114 |
112 | 112 | 0.34 |
113 | 113 | 0.0289 |
114 | 114 | 0.415 |
115 | 115 | 0.851 |
116 | 116 | 0.779 |
117 | 117 | 0.00232 |
118 | 118 | 0.109 |
119 | 119 | 0.497 |
12 | 12 | 0.853 |
120 | 120 | 0.572 |
121 | 121 | 0.458 |
122 | 122 | 0.343 |
123 | 123 | 0.0251 |
124 | 124 | 0.139 |
125 | 125 | 0.34 |
126 | 126 | 0.252 |
127 | 127 | 0.643 |
128 | 128 | 0.428 |
129 | 129 | 0.556 |
13 | 13 | 0.542 |
130 | 130 | 0.542 |
131 | 131 | 0.846 |
132 | 132 | 0.375 |
133 | 133 | 0.00109 |
134 | 134 | 0.606 |
135 | 135 | 0.512 |
136 | 136 | 0.499 |
137 | 137 | 0.141 |
138 | 138 | 0.45 |
139 | 139 | 0.112 |
14 | 14 | 0.462 |
140 | 140 | 0.542 |
141 | 141 | 0.314 |
142 | 142 | 0.302 |
143 | 143 | 0.0334 |
144 | 144 | 0.814 |
145 | 145 | 0.24 |
146 | 146 | 0.0979 |
147 | 147 | 0.108 |
148 | 148 | 0.123 |
149 | 149 | 0.267 |
15 | 15 | 0.13 |
150 | 150 | 0.549 |
151 | 151 | 0.927 |
152 | 152 | 0.374 |
153 | 153 | 0.432 |
154 | 154 | 0.896 |
155 | 155 | 0.0075 |
156 | 156 | 0.398 |
157 | 157 | 0.244 |
158 | 158 | 0.1 |
159 | 159 | 0.177 |
16 | 16 | 0.936 |
160 | 160 | 0.272 |
161 | 161 | 0.067 |
162 | 162 | 0.8 |
163 | 163 | 0.297 |
164 | 164 | 0.614 |
165 | 165 | 0.619 |
166 | 166 | 0.477 |
167 | 167 | 0.143 |
168 | 168 | 0.196 |
169 | 169 | 0.55 |
17 | 17 | 0.922 |
18 | 18 | 0.623 |
19 | 19 | 0.74 |
2 | 2 | 0.771 |
20 | 20 | 0.66 |
21 | 21 | 0.641 |
22 | 22 | 0.871 |
23 | 23 | 0.678 |
24 | 24 | 0.495 |
25 | 25 | 0.0304 |
26 | 26 | 0.16 |
27 | 27 | 0.224 |
28 | 28 | 0.421 |
29 | 29 | 0.0582 |
3 | 3 | 0.0499 |
30 | 30 | 0.417 |
31 | 31 | 0.749 |
32 | 32 | 0.232 |
33 | 33 | 0.517 |
34 | 34 | 0.955 |
35 | 35 | 0.109 |
36 | 36 | 0.0239 |
37 | 37 | 0.199 |
38 | 38 | 0.325 |
39 | 39 | 0.393 |
4 | 4 | 0.613 |
40 | 40 | 0.242 |
41 | 41 | 0.169 |
42 | 42 | 0.113 |
43 | 43 | 0.156 |
44 | 44 | 0.389 |
45 | 45 | 0.962 |
46 | 46 | 0.181 |
47 | 47 | 0.0788 |
48 | 48 | 0.163 |
49 | 49 | 0.0998 |
5 | 5 | 0.358 |
50 | 50 | 0.792 |
51 | 51 | 0.462 |
52 | 52 | 0.425 |
53 | 53 | 0.515 |
54 | 54 | 0.836 |
55 | 55 | 0.0955 |
56 | 56 | 0.749 |
57 | 57 | 0.384 |
58 | 58 | 0.0239 |
59 | 59 | 0.343 |
6 | 6 | 0.851 |
60 | 60 | 0.491 |
61 | 61 | 0.0499 |
62 | 62 | 0.0296 |
63 | 63 | 0.77 |
64 | 64 | 0.224 |
65 | 65 | 0.691 |
66 | 66 | 0.638 |
67 | 67 | 0.461 |
68 | 68 | 0.689 |
69 | 69 | 0.655 |
7 | 7 | 0.138 |
70 | 70 | 0.095 |
71 | 71 | 0.0403 |
72 | 72 | 0.0681 |
73 | 73 | 0.758 |
74 | 74 | 0.182 |
75 | 75 | 0.0115 |
76 | 76 | 0.0698 |
77 | 77 | 0.533 |
78 | 78 | 0.175 |
79 | 79 | 0.705 |
8 | 8 | 0.495 |
80 | 80 | 0.0111 |
81 | 81 | 0.166 |
82 | 82 | 0.162 |
83 | 83 | 0.658 |
84 | 84 | 0.436 |
85 | 85 | 0.593 |
86 | 86 | 0.126 |
87 | 87 | 0.266 |
88 | 88 | 0.657 |
89 | 89 | 0.927 |
9 | 9 | 0.485 |
90 | 90 | 0.0284 |
91 | 91 | 0.53 |
92 | 92 | 0.356 |
93 | 93 | 0.825 |
94 | 94 | 0.0483 |
95 | 95 | 0.00953 |
96 | 96 | 0.618 |
97 | 97 | 0.391 |
98 | 98 | 0.116 |
99 | 99 | 0.0396 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12181
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)