FF:12201-129C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession= | |DRA_sample_Accession=RNA-Seq@SAMD00013678 | ||
|accession_numbers=CAGE;DRX008069;DRR008941;DRZ000366;DRZ001751!RNA-Seq;DRX012350;DRR013798;DRZ002999; | |accession_numbers=CAGE;DRX008069;DRR008941;DRZ000366;DRZ001751;DRZ011716;DRZ013101!RNA-Seq;DRX012350;DRR013798;DRZ002999; | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.03!104.94!TCF7;;chr2:68592406..68592424,+!p1@PLEK!1.98!93.70!PLEK;;chr3:27763807..27763822,-!p1@EOMES!1.93!84.95!EOMES;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.21!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.94!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.86!71.21!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.79!59.97!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!1.69!63.71!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.68!123.68!AKNA;;chr2:231090433..231090469,+!p1@SP140!1.66!44.98!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.65!43.73!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.60!169.91!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.60!38.73!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.98!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.54!33.73!IKZF1;;chr1:26697243..26697258,-!p1@ZNF683!1.52!32.48!ZNF683;;chr1:25256756..25256774,-!p1@RUNX3!1.47!52.47!RUNX3;;chr14:75988771..75988826,+!p1@BATF!1.47!37.48!BATF;;chr20:50159198..50159299,-!p1@NFATC2!1.46!39.98!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!1.45!33.73!SATB1;;chr19:16435625..16435682,+!p1@KLF2!1.44!820.79!KLF2;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.23!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.44!26.24!IKZF3;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.99!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.39!23.74!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.39!23.74!LEF1;;chr5:133451347..133451358,+!p3@TCF7!1.39!23.74!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.74!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.49!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.37!22.49!SP140;;chr3:71542684..71542720,-!p18@FOXP1!1.35!21.24!FOXP1;;chr11:47400078..47400106,-!p1@SPI1!1.35!21.24!SPI1;;chr15:60884706..60884743,-!p1@RORA!1.34!106.19!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.32!24.99!PRDM1;;chr11:128392273..128392308,-!p2@ETS1!1.27!73.71!ETS1;;chr6:91006518..91006570,-!p1@BACH2!1.27!39.98!BACH2;;chr17:38020557..38020572,-!p4@IKZF3!1.27!17.49!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.26!47.47!ZNF101;;chr4:57522166..57522260,-!p2@HOPX!1.24!18.74!HOPX;;chr11:128563948..128564003,+!p1@FLI1!1.21!178.65!FLI1;;chr6:391743..391759,+!p1@IRF4!1.20!14.99!IRF4;;chr3:71179699..71179744,-!p2@FOXP1!1.17!101.19!FOXP1;;chr13:41593425..41593480,-!p1@ELF1!1.17!86.20!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.24!GATA3;;chr17:38020481..38020506,-!p7@IKZF3!1.17!13.74!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.74!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.14!27.48!TOX;;chr3:71542651..71542683,-!p22@FOXP1!1.13!12.49!FOXP1;;chr1:26697189..26697205,-!p2@ZNF683!1.13!12.49!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!1.11!398.53!ETS1;;chr16:88752889..88752921,-!p1@SNAI3!1.11!13.74!SNAI3;;chr14:99738138..99738163,-!p1@BCL11B!1.09!11.24!BCL11B;;chr20:52226313..52226350,-!p3@ZNF217!1.09!11.24!ZNF217;;chr21:36421347..36421380,-!p8@RUNX1!1.09!11.24!RUNX1;;chr4:109088089..109088101,-!p11@LEF1!1.09!11.24!LEF1;;chr7:50344144..50344157,+!p6@IKZF1!1.09!11.24!IKZF1;;chr9:3525727..3525828,-!p2@RFX3!1.08!28.73!RFX3;;chr9:117150303..117150312,-!p3@AKNA!1.07!13.74!AKNA;;chr21:36421535..36421610,-!p2@RUNX1!1.04!36.23!RUNX1;;chr4:185395633..185395651,-!p2@IRF2!1.04!16.24!IRF2;;chr13:74707894..74707947,-!p6@KLF12!1.04!11.24!KLF12;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.99!GFI1;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.99!IKZF3;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.99!PRDM1;;chr6:106546786..106546802,+!p6@PRDM1!1.04!9.99!PRDM1;;chr6:45296048..45296082,+!p1@RUNX2!1.03!11.24!RUNX2;;chr14:64970670..64970712,-!p3@ZBTB25!1.00!19.99!ZBTB25;;chr8:72756023..72756055,-!p6@MSC!1.00!11.24!MSC;;chr12:54778471..54778528,-!p1@ZNF385A!0.99!8.75!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.75!IRF8;;chr4:109088940..109089037,-!p4@LEF1!0.99!8.75!LEF1;;chr4:109089901..109089930,-!p3@LEF1!0.99!8.75!LEF1;;chr19:19729477..19729542,-!p1@PBX4!0.98!18.74!PBX4;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!226.12!TSC22D3;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.99!GATA3;;chr16:68119324..68119364,+!p1@NFATC3!0.95!36.23!NFATC3;;chr16:89787937..89787971,+!p1@ZNF276!0.95!21.24!ZNF276;;chrX:101186981..101187030,-!p1@ZMAT1!0.94!26.24!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.94!19.99!NFE2L2;;chr16:79633894..79633954,-!p3@MAF!0.93!14.99!MAF;;chr17:46621311..46621332,-!p8@HOXB2!0.93!9.99!HOXB2;;chr14:75988831..75988847,+!p2@BATF!0.93!7.50!BATF;;chr2:192015677..192015691,-!p3@STAT4!0.93!7.50!STAT4;;chr2:231090344..231090361,-!p3@SP110!0.93!7.50!SP110;;chr4:57522598..57522664,-!p3@HOPX!0.93!7.50!HOPX;;chr21:36421147..36421193,-!p10@RUNX1!0.93!7.50!RUNX1;;chr19:20748574..20748599,-!p1@ZNF737!0.92!46.22!ZNF737;;chr19:53289995..53290050,-!p1@ZNF600!0.92!31.23!ZNF600;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.24!ZNF540;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.91!8.75!ZFP36L1;;chr9:114287433..114287513,+!p1@ZNF483!0.90!18.74!ZNF483;;chr19:40502938..40502987,+!p1@ZNF546!0.88!17.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hr19:56915668..56915732,+!p1@ZNF583!0.32!6.25!ZNF583;;chr6:35227282..35227330,+!p2@ZNF76!0.32!6.25!ZNF76;;chr12:133613937..133613994,+!p2@ZNF84!0.32!3.75!ZNF84;;chr19:22018938..22018963,-!p3@ZNF43!0.32!3.75!ZNF43;;chr15:67358111..67358122,+!p6@SMAD3!0.32!2.50!SMAD3;;chr6:44355478..44355489,+!p5@CDC5L!0.32!1.25!CDC5L;;chr20:46130846..46130869,+!p5@NCOA3!0.32!1.25!NCOA3;;chr2:25565377..25565389,-!p9@DNMT3A!0.32!1.25!DNMT3A;;chr19:12902289..12902307,+!p1@JUNB!0.31!432.26!JUNB;;chr16:67867749..67867852,-!p1@CENPT!0.31!42.48!CENPT;;chr19:52873166..52873208,+!p1@ZNF880!0.31!24.99!ZNF880;;chr19:9731872..9731915,-!p1@ZNF561!0.31!23.74!ZNF561;;chr18:48494379..48494426,+!p1@ELAC1,p2@SMAD4!0.31!19.99!SMAD4;;chr4:124374..124410,+!p2@ZNF718!0.31!18.74!ZNF718;;chr17:36861496..36861586,+!p1@MLLT6!0.31!17.49!MLLT6;;chr19:37157713..37157760,-!p1@ZNF461!0.31!9.99!ZNF461;;chr19:58514129..58514205,-!p1@ZNF606!0.31!9.99!ZNF606;;chr19:44507091..44507163,+!p1@ZNF230!0.31!7.50!ZNF230;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.31!7.50!ZNF222;;chr2:148778570..148778589,+!p4@MBD5!0.31!5.00!MBD5;;chr2:60780607..60780624,-!p2@BCL11A!0.31!5.00!BCL11A;;chr22:50247528..50247568,+!p2@ZBED4!0.31!3.75!ZBED4;;chr4:26322267..26322334,+!p3@RBPJ!0.31!3.75!RBPJ;;chr8:146228226..146228264,-!p2@ZNF252!0.31!3.75!ZNF252P;;chr7:64254771..64254782,+!p3@ZNF138!0.31!2.50!ZNF138;;chr3:107241993..107242023,+!p4@BBX!0.31!2.50!BBX;;chr16:29817399..29817425,+!p13@MAZ!0.31!2.50!MAZ;;chr17:42297282..42297300,-!p9@UBTF!0.31!2.50!UBTF;;chr19:20150029..20150078,-!p3@ZNF682!0.31!2.50!ZNF682;;chr19:21324863..21324874,+!p2@ZNF431!0.31!2.50!ZNF431;;chr15:31619119..31619131,+!p14@KLF13!0.31!1.25!KLF13;;chr19:52772811..52772817,+!p3@ZNF766!0.31!1.25!ZNF766;;chr19:57019098..57019142,+!p3@ZNF471!0.31!1.25!ZNF471;;chr12:53847004..53847008,+!p13@PCBP2!0.31!1.25!PCBP2;;chr14:35872414..35872425,-!p7@NFKBIA!0.31!1.25!NFKBIA;;chr14:58832207..58832210,+!p6@ARID4A!0.31!1.25!ARID4A;;chr2:28616471..28616478,+!p7@FOSL2!0.31!1.25!FOSL2;;chr8:128750143..128750160,+!p19@MYC!0.31!1.25!MYC;;chr10:3827389..3827408,-!p1@KLF6!0.30!138.67!KLF6;;chr20:34359925..34359991,+!p1@PHF20!0.30!79.96!PHF20;;chr1:14075903..14075940,+!p1@PRDM2!0.30!38.73!PRDM2;;chr4:103422499..103422632,+!p1@NFKB1!0.30!37.48!NFKB1;;chr2:238600789..238600925,+!p1@LRRFIP1!0.30!36.23!LRRFIP1;;chr17:65821603..65821635,+!p1@BPTF!0.30!29.98!BPTF;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.98!ZNF192;;chr6:122720765..122720831,+!p1@HSF2!0.30!23.74!HSF2;;chr8:146126799..146126865,-!p1@COMMD5,p1@ZNF250!0.30!16.24!ZNF250;;chr12:498695..498748,-!p2@KDM5A!0.30!11.24!KDM5A;;chr14:74226961..74227020,-!p1@C14orf43!0.30!11.24!C14orf43;;chr2:28616358..28616380,+!p3@FOSL2!0.30!8.75!FOSL2;;chr4:4291944..4292011,+!p1@ZBTB49!0.30!8.75!ZBTB49;;chr3:5020939..5020952,+!p2@BHLHE40!0.30!5.00!BHLHE40;;chr6:28367510..28367537,-!p1@ZSCAN12!0.30!5.00!ZSCAN12;;chr19:44598498..44598529,+!p1@ZNF224!0.30!5.00!ZNF224;;chr21:27107726..27107772,+!p4@GABPA!0.30!5.00!GABPA;;chr16:67596384..67596411,+!p3@CTCF!0.30!3.75!CTCF;;chr16:71518504..71518542,-!p1@ZNF19!0.30!3.75!ZNF19;;chr19:37329254..37329295,-!p1@ZNF790!0.30!3.75!ZNF790;;chr12:72058102..72058127,+!p7@THAP2!0.30!2.50!THAP2;;chrX:70586082..70586093,+!p2@TAF1!0.30!2.50!TAF1;;chrX:70316005..70316034,+!p2@FOXO4!0.30!2.50!FOXO4;;chr19:58373157..58373159,+!p4@ZNF587!0.30!2.50!ZNF587;;chr8:182368..182402,+!p2@ZNF596!0.30!2.50!ZNF596;;chr8:41909982..41910009,-!p2@KAT6A!0.30!1.25!KAT6A;;chr8:72756637..72756664,-!p3@MSC!0.30!1.25!MSC;;chr16:30407021..30407061,+!p3@ZNF48!0.30!1.25!ZNF48;;chr19:12175596..12175605,+!p4@ZNF844!0.30!1.25!ZNF844;;chr19:20748557..20748568,-!p2@ZNF737!0.30!1.25!ZNF737;;chr1:209979467..209979494,-!p1@IRF6!0.30!1.25!IRF6;;chr10:60145155..60145206,+!p1@TFAM!0.29!77.46!TFAM;;chr4:4291861..4291913,-!p1@LYAR!0.29!39.98!LYAR;;chrX:70586140..70586218,+!p1@TAF1!0.29!32.48!TAF1;;chr3:169491171..169491205,+!p1@MYNN!0.29!29.98!MYNN;; | |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.03!104.94!TCF7;;chr2:68592406..68592424,+!p1@PLEK!1.98!93.70!PLEK;;chr3:27763807..27763822,-!p1@EOMES!1.93!84.95!EOMES;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.21!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.94!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.86!71.21!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.79!59.97!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!1.69!63.71!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.68!123.68!AKNA;;chr2:231090433..231090469,+!p1@SP140!1.66!44.98!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.65!43.73!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.60!169.91!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.60!38.73!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.98!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.54!33.73!IKZF1;;chr1:26697243..26697258,-!p1@ZNF683!1.52!32.48!ZNF683;;chr1:25256756..25256774,-!p1@RUNX3!1.47!52.47!RUNX3;;chr14:75988771..75988826,+!p1@BATF!1.47!37.48!BATF;;chr20:50159198..50159299,-!p1@NFATC2!1.46!39.98!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!1.45!33.73!SATB1;;chr19:16435625..16435682,+!p1@KLF2!1.44!820.79!KLF2;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.23!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.44!26.24!IKZF3;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.99!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.39!23.74!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.39!23.74!LEF1;;chr5:133451347..133451358,+!p3@TCF7!1.39!23.74!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.74!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.49!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.37!22.49!SP140;;chr3:71542684..71542720,-!p18@FOXP1!1.35!21.24!FOXP1;;chr11:47400078..47400106,-!p1@SPI1!1.35!21.24!SPI1;;chr15:60884706..60884743,-!p1@RORA!1.34!106.19!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.32!24.99!PRDM1;;chr11:128392273..128392308,-!p2@ETS1!1.27!73.71!ETS1;;chr6:91006518..91006570,-!p1@BACH2!1.27!39.98!BACH2;;chr17:38020557..38020572,-!p4@IKZF3!1.27!17.49!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.26!47.47!ZNF101;;chr4:57522166..57522260,-!p2@HOPX!1.24!18.74!HOPX;;chr11:128563948..128564003,+!p1@FLI1!1.21!178.65!FLI1;;chr6:391743..391759,+!p1@IRF4!1.20!14.99!IRF4;;chr3:71179699..71179744,-!p2@FOXP1!1.17!101.19!FOXP1;;chr13:41593425..41593480,-!p1@ELF1!1.17!86.20!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.24!GATA3;;chr17:38020481..38020506,-!p7@IKZF3!1.17!13.74!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.74!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.14!27.48!TOX;;chr3:71542651..71542683,-!p22@FOXP1!1.13!12.49!FOXP1;;chr1:26697189..26697205,-!p2@ZNF683!1.13!12.49!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!1.11!398.53!ETS1;;chr16:88752889..88752921,-!p1@SNAI3!1.11!13.74!SNAI3;;chr14:99738138..99738163,-!p1@BCL11B!1.09!11.24!BCL11B;;chr20:52226313..52226350,-!p3@ZNF217!1.09!11.24!ZNF217;;chr21:36421347..36421380,-!p8@RUNX1!1.09!11.24!RUNX1;;chr4:109088089..109088101,-!p11@LEF1!1.09!11.24!LEF1;;chr7:50344144..50344157,+!p6@IKZF1!1.09!11.24!IKZF1;;chr9:3525727..3525828,-!p2@RFX3!1.08!28.73!RFX3;;chr9:117150303..117150312,-!p3@AKNA!1.07!13.74!AKNA;;chr21:36421535..36421610,-!p2@RUNX1!1.04!36.23!RUNX1;;chr4:185395633..185395651,-!p2@IRF2!1.04!16.24!IRF2;;chr13:74707894..74707947,-!p6@KLF12!1.04!11.24!KLF12;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.99!GFI1;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.99!IKZF3;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.99!PRDM1;;chr6:106546786..106546802,+!p6@PRDM1!1.04!9.99!PRDM1;;chr6:45296048..45296082,+!p1@RUNX2!1.03!11.24!RUNX2;;chr14:64970670..64970712,-!p3@ZBTB25!1.00!19.99!ZBTB25;;chr8:72756023..72756055,-!p6@MSC!1.00!11.24!MSC;;chr12:54778471..54778528,-!p1@ZNF385A!0.99!8.75!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.75!IRF8;;chr4:109088940..109089037,-!p4@LEF1!0.99!8.75!LEF1;;chr4:109089901..109089930,-!p3@LEF1!0.99!8.75!LEF1;;chr19:19729477..19729542,-!p1@PBX4!0.98!18.74!PBX4;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!226.12!TSC22D3;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.99!GATA3;;chr16:68119324..68119364,+!p1@NFATC3!0.95!36.23!NFATC3;;chr16:89787937..89787971,+!p1@ZNF276!0.95!21.24!ZNF276;;chrX:101186981..101187030,-!p1@ZMAT1!0.94!26.24!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.94!19.99!NFE2L2;;chr16:79633894..79633954,-!p3@MAF!0.93!14.99!MAF;;chr17:46621311..46621332,-!p8@HOXB2!0.93!9.99!HOXB2;;chr14:75988831..75988847,+!p2@BATF!0.93!7.50!BATF;;chr2:192015677..192015691,-!p3@STAT4!0.93!7.50!STAT4;;chr2:231090344..231090361,-!p3@SP110!0.93!7.50!SP110;;chr4:57522598..57522664,-!p3@HOPX!0.93!7.50!HOPX;;chr21:36421147..36421193,-!p10@RUNX1!0.93!7.50!RUNX1;;chr19:20748574..20748599,-!p1@ZNF737!0.92!46.22!ZNF737;;chr19:53289995..53290050,-!p1@ZNF600!0.92!31.23!ZNF600;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.24!ZNF540;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.91!8.75!ZFP36L1;;chr9:114287433..114287513,+!p1@ZNF483!0.90!18.74!ZNF483;;chr19:40502938..40502987,+!p1@ZNF546!0.88!17.49!ZNF546;;chr6:45390269..45390298,+!p5@RUNX2!0.88!11.24!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!0.88!9.99!MYBL1;;chr4:81104895..81104920,+!p2@PRDM8!0.88!9.99!PRDM8;;chr2:148778973..148779035,+!p3@MBD5!0.87!17.49!MBD5;;chr20:51588873..51588953,+!p1@TSHZ2!0.87!8.75!TSHZ2;;chr4:38665769..38665801,+!p2@KLF3!0.86!59.97!KLF3;;chr13:74708029..74708077,-!p2@KLF12!0.86!18.74!KLF12;;chr9:32550839..32550962,-!p3@TOPORS!0.86!16.24!TOPORS;;chr6:42419649..42419673,-!p3@TRERF1!0.86!11.24!TRERF1;;chr6:91006503..91006517,-!p3@BACH2!0.86!6.25!BACH2;;chr7:137620650..137620677,-!p3@CREB3L2!0.86!6.25!CREB3L2;;chr9:20620829..20620848,-!p7@MLLT3!0.86!6.25!MLLT3;;chrX:49121165..49121179,-!p1@FOXP3!0.86!6.25!FOXP3;;chr16:89789248..89789270,+!p8@ZNF276!0.86!6.25!ZNF276;;chr16:89789271..89789291,+!p5@ZNF276!0.86!6.25!ZNF276;;chr17:38020516..38020544,-!p5@IKZF3!0.86!6.25!IKZF3;;chr17:38020607..38020621,-!p9@IKZF3!0.86!6.25!IKZF3;;chr17:56565257..56565283,-!p2@HSF5!0.86!6.25!HSF5;;chr1:25291475..25291511,-!p2@RUNX3!0.86!6.25!RUNX3;;chr20:56195525..56195556,-!p2@ZBP1!0.86!6.25!ZBP1;;chr2:97202991..97203043,+!p3@ARID5A!0.86!6.25!ARID5A;;chr3:18480217..18480239,-!p3@SATB1!0.86!6.25!SATB1;;chr4:149363494..149363543,-!p1@NR3C2!0.86!6.25!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.86!6.25!NR3C2;;chr11:13299319..13299424,+!p1@ARNTL!0.85!64.96!ARNTL;;chr19:12405606..12405629,-!p2@ZNF44!0.85!12.49!ZNF44;;chr19:58220517..58220583,-!p1@ZNF154!0.82!18.74!ZNF154;;chr19:52674696..52674758,-!p1@ZNF836!0.82!17.49!ZNF836;;chr1:45805693..45805718,+!p3@TOE1!0.81!12.49!TOE1;;chr7:77428066..77428132,+!p2@PHTF2!0.80!37.48!PHTF2;;chr15:60884747..60884774,-!p3@RORA!0.80!13.74!RORA;;chr19:19779686..19779697,+!p3@ZNF101!0.80!6.25!ZNF101;;chr6:135502501..135502546,+!p1@MYB!0.79!6.25!MYB;;chr4:140005443..140005527,-!p2@ELF2!0.78!32.48!ELF2;;chr7:64838786..64838809,+!p2@ZNF92!0.78!31.23!ZNF92;;chr3:114819124..114819200,-!p3@ZBTB20!0.78!12.49!ZBTB20;;chr2:214017168..214017189,-!p8@IKZF2!0.78!5.00!IKZF2;;chr3:18487057..18487105,-!p4@SATB1!0.78!5.00!SATB1;;chr3:71353892..71353928,-!p31@FOXP1!0.78!5.00!FOXP1;;chr4:109089290..109089320,-!p14@LEF1!0.78!5.00!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.78!5.00!HOPX;;chr1:61542922..61542955,+!p10@NFIA!0.78!5.00!NFIA;;chr10:8097591..8097627,+!p7@GATA3!0.78!5.00!GATA3;;chr11:47400032..47400043,-!p5@SPI1!0.78!5.00!SPI1;;chr5:176735063..176735088,-!p2@MXD3!0.78!5.00!MXD3;;chr7:50343864..50343888,+!p7@IKZF1!0.78!5.00!IKZF1;;chr8:67525467..67525472,-!p4@MYBL1!0.78!5.00!MYBL1;;chr19:21579908..21579949,+!p1@ZNF493!0.77!32.48!ZNF493;;chr7:21467674..21467727,+!p1@SP4!0.77!21.24!SP4;;chr20:44600496..44600541,-!p2@ZNF335!0.77!13.74!ZNF335;;chr5:131826457..131826514,-!p1@IRF1!0.76!206.14!IRF1;;chr14:65569101..65569119,-!p3@MAX!0.76!16.24!MAX;;chr14:64970494..64970578,-!p1@ZBTB25!0.75!51.22!ZBTB25;;chr16:79634624..79634642,-!p1@MAF!0.75!19.99!MAF;;chr17:38256973..38256990,-!p5@NR1D1!0.75!11.24!NR1D1;;chr7:86781734..86781777,+!p1@DMTF1!0.74!92.45!DMTF1;;chr2:145277640..145277771,-!p1@ZEB2!0.73!64.96!ZEB2;;chr13:41240737..41240787,-!p1@FOXO1!0.73!58.72!FOXO1;;chr19:49140609..49140643,-!p1@DBP!0.73!27.48!DBP;;chrX:131624056..131624069,-!p2@MBNL3!0.73!6.25!MBNL3;;chr9:2016724..2016752,+!p7@SMARCA2!0.72!8.75!SMARCA2;;chr19:11877805..11877832,+!p2@ZNF441!0.72!7.50!ZNF441;;chr10:104154246..104154347,+!p3@NFKB2!0.71!28.73!NFKB2;;chr19:19976634..19976677,+!p2@ZNF253!0.71!16.24!ZNF253;;chr2:97202451..97202462,+!p2@ARID5A!0.71!9.99!ARID5A;;chr19:19779589..19779616,+!p2@ZNF101!0.71!8.75!ZNF101;;chr9:20621927..20621996,-!p3@MLLT3!0.71!7.50!MLLT3;;chrX:131623982..131624011,-!p6@MBNL3!0.71!6.25!MBNL3;;chr3:18466660..18466676,-!p5@SATB1!0.71!5.00!SATB1;;chr9:99540335..99540388,-!p1@ZNF510!0.70!33.73!ZNF510;;chr3:18466787..18466839,-!p1@SATB1!0.70!19.99!SATB1;;chr19:19976683..19976709,+!p1@ZNF253!0.70!19.99!ZNF253;;chr19:12444440..12444455,-!p1@ZNF563!0.70!7.50!ZNF563;;chr2:231084659..231084721,-!p1@SP110!0.69!104.94!SP110;;chr15:31619326..31619390,+!p2@KLF13!0.69!51.22!KLF13;;chr7:64126503..64126528,+!p1@ZNF107!0.69!31.23!ZNF107;;chr19:19932513..19932569,-!p1@ZNF506!0.68!82.45!ZNF506;;chr2:174828545..174828644,-!p1@SP3!0.68!67.46!SP3;;chr14:90085458..90085557,-!p1@FOXN3!0.68!44.98!FOXN3;;chr11:128392309..128392350,-!p3@ETS1!0.68!9.99!ETS1;;chr19:44669280..44669294,+!p4@ZNF226,p4@ZNF234!0.68!6.25!ZNF226;;chr9:32550965..32551031,-!p4@TOPORS!0.68!6.25!TOPORS;;chr19:38183208..38183225,-!p1@ZNF781!0.68!5.00!ZNF781;;chr19:38183138..38183157,-!p2@ZNF781!0.68!3.75!ZNF781;;chr20:57757940..57757966,+!p@chr20:57757940..57757966,+!0.68!3.75!ZNF831;;chr21:34442439..34442455,+!p1@OLIG1!0.68!3.75!OLIG1;;chr6:106546834..106546850,+!p4@PRDM1!0.68!3.75!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.68!3.75!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.68!3.75!TOX;;chr17:37934392..37934398,-!p11@IKZF3!0.68!3.75!IKZF3;;chr17:41738684..41738704,-!p2@MEOX1!0.68!3.75!MEOX1;;chr17:45810816..45810838,+!p2@TBX21!0.68!3.75!TBX21;;chr2:100759037..100759058,-!p2@AFF3!0.68!3.75!A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1;;chr4:109088185..109088192,-!p32@LEF1!0.35!1.25!LEF1;;chr4:109089050..109089067,-!p26@LEF1!0.35!1.25!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.35!1.25!LEF1;;chr4:109089966..109089977,-!p15@LEF1!0.35!1.25!LEF1;;chr4:109090026..109090031,-!p20@LEF1!0.35!1.25!LEF1;;chr4:109090054..109090073,-!p7@LEF1!0.35!1.25!LEF1;;chr4:109090106..109090124,-!p10@LEF1!0.35!1.25!LEF1;;chr4:109090408..109090441,-!p21@LEF1!0.35!1.25!LEF1;;chr4:149363475..149363492,-!p2@NR3C2!0.35!1.25!NR3C2;;chr4:149363637..149363651,-!p4@NR3C2!0.35!1.25!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.35!1.25!NR3C2;;chr4:57522701..57522712,-!p10@HOPX!0.35!1.25!HOPX;;chr14:75746705..75746720,+!p8@FOS!0.35!1.25!FOS;;chr14:99639180..99639182,-!p7@BCL11B!0.35!1.25!BCL11B;;chr14:99737850..99737852,-!p3@BCL11B!0.35!1.25!BCL11B;;chr14:99737996..99738007,-!p5@BCL11B!0.35!1.25!BCL11B;;chr14:99738059..99738086,-!p2@BCL11B!0.35!1.25!BCL11B;;chr15:31684663..31684717,+!p10@KLF13!0.35!1.25!KLF13;;chr15:57212102..57212120,+!p18@TCF12!0.35!1.25!TCF12;;chr15:67391010..67391046,+!p13@SMAD3!0.35!1.25!SMAD3;;chr16:30621491..30621503,-!p7@ZNF689!0.35!1.25!ZNF689;;chr16:69600058..69600065,+!p9@NFAT5!0.35!1.25!NFAT5;;chr16:85936412..85936431,+!p2@IRF8!0.35!1.25!IRF8;;chr17:3571934..3571935,-!p3@TAX1BP3!0.35!1.25!TAX1BP3;;chr17:37934268..37934277,-!p10@IKZF3!0.35!1.25!IKZF3;;chr17:40540591..40540600,-!p3@STAT3!0.35!1.25!STAT3;;chr17:42287802..42287806,-!p25@UBTF!0.35!1.25!UBTF;;chr17:4981535..4981551,+!p2@ZFP3!0.35!1.25!ZFP3;;chr17:4981570..4981591,+!p3@ZFP3!0.35!1.25!ZFP3;;chr18:42260236..42260250,+!p7@SETBP1!0.35!1.25!SETBP1;;chr18:46477326..46477341,-!p2@SMAD7!0.35!1.25!SMAD7;;chr19:12444399..12444415,-!p5@ZNF563!0.35!1.25!ZNF563;;chr19:16435423..16435484,+!p5@KLF2!0.35!1.25!KLF2;;chr19:16435735..16435773,+!p4@KLF2!0.35!1.25!KLF2;;chr19:19729458..19729469,-!p2@PBX4!0.35!1.25!PBX4;;chr19:19976620..19976631,+!p4@ZNF253!0.35!1.25!ZNF253;;chr19:20748614..20748617,-!p5@ZNF737!0.35!1.25!ZNF737;;chr19:20959142..20959151,+!p2@ZNF66P!0.35!1.25!ZNF66P;;chr19:24270027..24270034,+!p8@ZNF254!0.35!1.25!ZNF254;;chr19:37096126..37096137,-!p4@ZNF529!0.35!1.25!ZNF529;;chr19:38085739..38085762,+!p3@ZNF540!0.35!1.25!ZNF540;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.34!88.70!TBX19;;chr10:31608127..31608156,+!p1@ZEB1!0.34!36.23!ZEB1;;chr10:45496346..45496409,+!p1@ZNF22!0.34!27.48!ZNF22;;chr19:58978418..58978456,+!p1@ZNF324!0.34!11.24!ZNF324;;chr3:52719888..52719908,-!p2@PBRM1!0.34!8.75!PBRM1;;chr2:157198916..157198978,-!p2@NR4A2!0.34!6.25!NR4A2;;chr19:53238260..53238312,-!p1@ZNF611!0.34!6.25!ZNF611;;chr19:58071201..58071238,-!p1@ZNF550!0.34!6.25!ZNF550;;chr21:34144115..34144138,-!p2@GCFC1!0.34!5.00!GCFC1;;chr19:52408227..52408243,-!p2@ZNF649!0.34!3.75!ZNF649;;chr1:211432887..211432903,+!p4@RCOR3!0.34!3.75!RCOR3;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.75!ZNF10;;chr19:19303047..19303079,+!p3@RFXANK!0.34!3.75!RFXANK;;chr21:44394742..44394756,+!p2@PKNOX1!0.34!3.75!PKNOX1;;chr5:132299008..132299026,-!p5@AFF4!0.34!3.75!AFF4;;chr14:64970401..64970423,-!p7@ZBTB25!0.34!2.50!ZBTB25;;chr14:64970451..64970473,-!p6@ZBTB25!0.34!2.50!ZBTB25;;chr20:48807615..48807644,+!p6@CEBPB!0.34!2.50!CEBPB;;chr2:208030299..208030332,-!p6@KLF7!0.34!2.50!KLF7;;chr20:46130619..46130664,+!p1@NCOA3!0.33!52.47!NCOA3;;chrX:153363125..153363182,-!p1@MECP2!0.33!51.22!MECP2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.33!17.49!ZCCHC6;;chr1:27022164..27022220,+!p2@ARID1A!0.33!13.74!ARID1A;;chr19:53898380..53898422,+!p1@ZNF765!0.33!11.24!ZNF765;;chr1:14026671..14026705,+!p2@PRDM2!0.33!11.24!PRDM2;;chr16:3285144..3285191,-!p1@ZNF200!0.33!8.75!ZNF200;;chr17:5095126..5095169,-!p1@ZNF594!0.33!7.50!ZNF594;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.33!7.50!ZNF816;;chr19:35225078..35225120,+!p2@ZNF181!0.33!3.75!ZNF181;;chr19:37997812..37997866,+!p1@ZNF793!0.33!2.50!ZNF793;;chr9:73028598..73028617,-!p5@KLF9!0.33!2.50!KLF9;;chr12:133707021..133707071,-!p2@ZNF891!0.33!2.50!ZNF891;;chr8:71316428..71316459,-!p2@NCOA2!0.33!2.50!NCOA2;;chr16:67596417..67596497,+!p1@CTCF!0.32!64.96!CTCF;;chrX:77041685..77041716,-!p1@ATRX!0.32!53.72!ATRX;;chr6:15246261..15246312,+!p1@JARID2!0.32!46.22!JARID2;;chr18:47814032..47814079,-!p1@CXXC1!0.32!34.98!CXXC1;;chr16:3355472..3355514,+!p1@ZNF75A!0.32!26.24!ZNF75A;;chr19:35168567..35168620,+!p1@ZNF302!0.32!21.24!ZNF302;;chr7:64254793..64254813,+!p1@ZNF138!0.32!21.24!ZNF138;;chr12:6798410..6798503,-!p1@ZNF384!0.32!19.99!ZNF384;;chr3:88108381..88108450,+!p1@ENST00000473136!0.32!19.99!ZNF654;;chr17:47439437..47439533,-!p1@ZNF652!0.32!14.99!ZNF652;;chr16:4322832..4322907,-!p1@TFAP4!0.32!13.74!TFAP4;;chr1:28995258..28995322,+!p1@GMEB1!0.32!13.74!GMEB1;;chr19:44716678..44716732,+!p1@ZNF227!0.32!12.49!ZNF227;;chr3:44519131..44519186,-!p1@ZNF445!0.32!9.99!ZNF445;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.32!9.99!ZNF10;;chr6:20403826..20403886,+!p2@E2F3!0.32!8.75!E2F3;;chr19:12251144..12251181,-!p2@ZNF20!0.32!7.50!ZNF20;;chr10:105110890..105110914,-!p2@PCGF6!0.32!6.25!PCGF6;;c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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12201-129C5 | |id=FF:12201-129C5 | ||
|is_a=EFO:0002091;;FF:0000030;;FF:0000210 | |is_a=EFO:0002091;;FF:0000030;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12182!RDhi10017 | |library_id=CNhs12182!RDhi10017 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12182 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12201 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12201 | |||
|name=CD8+ T Cells (pluriselect), donor090612, donation1 | |name=CD8+ T Cells (pluriselect), donor090612, donation1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12182,LSID975,release011,COMPLETED | |profile_hcage=CNhs12182,LSID975,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=T:3.07914668181;PDX1:2.28471045781;RUNX1..3:2.22083230066;ELF1,2,4:2.1668742045;ETS1,2:2.06108640306;PAX3,7:1.7416891684;FOX{D1,D2}:1.55144217663;SPI1:1.52022903124;NFIX:1.45505331268;RORA:1.45426751461;CRX:1.39811326496;FOXO1,3,4:1.39777776514;CDX1,2,4:1.35879442314;DMAP1_NCOR{1,2}_SMARC:1.35493372406;IRF1,2:1.28389890854;SPIB:1.22075081672;STAT1,3:1.20387386493;FOX{F1,F2,J1}:1.20011753784;GATA6:1.1503194746;LEF1_TCF7_TCF7L1,2:1.11064224979;BPTF:1.10682743318;TLX2:1.04239118226;PBX1:1.02036079442;HMX1:0.978893556167;TGIF1:0.950451015163;FOXD3:0.93947161944;SPZ1:0.924262085126;IRF7:0.847682536545;RBPJ:0.847195656491;POU1F1:0.833444168785;IKZF2:0.806035912766;NKX2-1,4:0.766478538886;RFX2..5_RFXANK_RFXAP:0.748344765726;PAX6:0.741158415467;RXRA_VDR{dimer}:0.735330048922;NKX6-1,2:0.722006634715;BREu{core}:0.692227356658;MYOD1:0.650060619528;FOXQ1:0.627045560353;ELK1,4_GABP{A,B1}:0.615675162433;FOXN1:0.592270980685;VSX1,2:0.579889181828;YY1:0.553762267858;NFIL3:0.503188260514;NFATC1..3:0.460578801419;ZEB1:0.452412870541;ZBTB16:0.439313982122;ATF5_CREB3:0.396003042475;ADNP_IRX_SIX_ZHX:0.39446739086;SOX5:0.392012686826;FOXA2:0.37759904783;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373598076363;TBX4,5:0.318308052773;NFKB1_REL_RELA:0.314355343481;NKX2-2,8:0.301075377096;SNAI1..3:0.292474271515;CUX2:0.272387371076;PRRX1,2:0.271424039919;PAX4:0.25582232842;NR1H4:0.248535777123;CEBPA,B_DDIT3:0.221345600462;HES1:0.191055037852;NANOG{mouse}:0.166488734549;PAX2:0.165911422981;FOXP3:0.165332300994;FOX{I1,J2}:0.162338925562;ALX1:0.162104744455;POU5F1:0.15788646019;TAL1_TCF{3,4,12}:0.122369886735;STAT2,4,6:0.113991039475;SOX2:0.103188929664;CREB1:0.0852625586102;LMO2:0.0509632862859;OCT4_SOX2{dimer}:0.0362956179025;AHR_ARNT_ARNT2:0.0308755454602;SREBF1,2:0.0040461758473;ARID5B:0.00135231065989;MYB:-0.0193576424345;ATF2:-0.0209590372004;STAT5{A,B}:-0.0338614889445;NR3C1:-0.0510722992528;FOXP1:-0.0733995604976;MYFfamily:-0.145959289279;NKX2-3_NKX2-5:-0.180042941289;NR5A1,2:-0.190217362724;NANOG:-0.191365027353;HAND1,2:-0.195481372432;SMAD1..7,9:-0.199687961304;EP300:-0.203077118737;HNF4A_NR2F1,2:-0.207236382236;POU2F1..3:-0.210522478279;NRF1:-0.220109284579;PITX1..3:-0.227060015954;HOX{A6,A7,B6,B7}:-0.245586751648;HNF1A:-0.250290616476;ZNF238:-0.250470245323;FOSL2:-0.254187235521;E2F1..5:-0.268404123571;ZNF143:-0.273656882781;ZNF148:-0.28253422647;AR:-0.290415375657;GLI1..3:-0.293208193973;JUN:-0.298395942003;DBP:-0.302347296036;ATF6:-0.318785061463;HLF:-0.329703431321;MTF1:-0.333231399871;NFE2L1:-0.35648280863;GCM1,2:-0.357107656261;ATF4:-0.370251631833;GATA4:-0.378179042179;BACH2:-0.378762932964;MAFB:-0.383028569622;NKX3-1:-0.388138250374;HBP1_HMGB_SSRP1_UBTF:-0.405361503657;ESR1:-0.405901000715;NHLH1,2:-0.435745021565;TFAP4:-0.441333015454;HMGA1,2:-0.466409290433;FOS_FOS{B,L1}_JUN{B,D}:-0.468121966207;NFE2L2:-0.475394147896;GFI1:-0.501590483917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.521885450681;RFX1:-0.547749317051;SRF:-0.548876825863;NFY{A,B,C}:-0.549042462665;NFE2:-0.550705534725;RREB1:-0.570033347265;ZNF384:-0.611882509358;PAX8:-0.618440268493;TP53:-0.646786362441;MZF1:-0.648834545966;CDC5L:-0.667776574742;AIRE:-0.69130593759;FOXM1:-0.711038771767;MEF2{A,B,C,D}:-0.712200190613;ALX4:-0.728701771532;SOX{8,9,10}:-0.741829076582;REST:-0.747139746921;EN1,2:-0.798631972524;TFCP2:-0.823939544727;HOX{A5,B5}:-0.826753024992;KLF4:-0.846593925363;EBF1:-0.877236734824;LHX3,4:-0.897507493159;ZNF423:-0.901827728325;PRDM1:-0.9128483188;ZBTB6:-0.91755638621;EVI1:-0.926091972398;PAX5:-0.941498364198;HIF1A:-0.949380481646;GFI1B:-0.957512160805;ZFP161:-0.958694373519;EGR1..3:-0.979495858545;MTE{core}:-0.98260245819;MED-1{core}:-0.997416033221;PPARG:-1.03927520546;ONECUT1,2:-1.04995243991;NKX3-2:-1.11445051696;XBP1:-1.12147611008;NR6A1:-1.13182127989;MAZ:-1.13237807482;PATZ1:-1.13891468403;HOX{A4,D4}:-1.14538897784;TLX1..3_NFIC{dimer}:-1.15052367054;HIC1:-1.20401080846;HSF1,2:-1.20650793301;GTF2I:-1.22917040339;TBP:-1.25282547436;FOXL1:-1.26411405364;TOPORS:-1.26706594834;SOX17:-1.26820995039;HOXA9_MEIS1:-1.28879535753;TEF:-1.35417147788;MYBL2:-1.36319773552;GZF1:-1.36978356935;POU6F1:-1.3951193024;ZIC1..3:-1.39840212091;TFAP2B:-1.41501417202;RXR{A,B,G}:-1.41657887095;UFEwm:-1.42819716992;GTF2A1,2:-1.45884318189;bHLH_family:-1.59272839041;TFDP1:-1.60191019792;XCPE1{core}:-1.61911374772;POU3F1..4:-1.62133123343;TEAD1:-1.73919240384;SP1:-1.80790813062;ESRRA:-1.96028045974;TFAP2{A,C}:-2.23555771947;IKZF1:-2.42812314463;PAX1,9:-2.70890168701 | |top_motifs=T:3.07914668181;PDX1:2.28471045781;RUNX1..3:2.22083230066;ELF1,2,4:2.1668742045;ETS1,2:2.06108640306;PAX3,7:1.7416891684;FOX{D1,D2}:1.55144217663;SPI1:1.52022903124;NFIX:1.45505331268;RORA:1.45426751461;CRX:1.39811326496;FOXO1,3,4:1.39777776514;CDX1,2,4:1.35879442314;DMAP1_NCOR{1,2}_SMARC:1.35493372406;IRF1,2:1.28389890854;SPIB:1.22075081672;STAT1,3:1.20387386493;FOX{F1,F2,J1}:1.20011753784;GATA6:1.1503194746;LEF1_TCF7_TCF7L1,2:1.11064224979;BPTF:1.10682743318;TLX2:1.04239118226;PBX1:1.02036079442;HMX1:0.978893556167;TGIF1:0.950451015163;FOXD3:0.93947161944;SPZ1:0.924262085126;IRF7:0.847682536545;RBPJ:0.847195656491;POU1F1:0.833444168785;IKZF2:0.806035912766;NKX2-1,4:0.766478538886;RFX2..5_RFXANK_RFXAP:0.748344765726;PAX6:0.741158415467;RXRA_VDR{dimer}:0.735330048922;NKX6-1,2:0.722006634715;BREu{core}:0.692227356658;MYOD1:0.650060619528;FOXQ1:0.627045560353;ELK1,4_GABP{A,B1}:0.615675162433;FOXN1:0.592270980685;VSX1,2:0.579889181828;YY1:0.553762267858;NFIL3:0.503188260514;NFATC1..3:0.460578801419;ZEB1:0.452412870541;ZBTB16:0.439313982122;ATF5_CREB3:0.396003042475;ADNP_IRX_SIX_ZHX:0.39446739086;SOX5:0.392012686826;FOXA2:0.37759904783;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373598076363;TBX4,5:0.318308052773;NFKB1_REL_RELA:0.314355343481;NKX2-2,8:0.301075377096;SNAI1..3:0.292474271515;CUX2:0.272387371076;PRRX1,2:0.271424039919;PAX4:0.25582232842;NR1H4:0.248535777123;CEBPA,B_DDIT3:0.221345600462;HES1:0.191055037852;NANOG{mouse}:0.166488734549;PAX2:0.165911422981;FOXP3:0.165332300994;FOX{I1,J2}:0.162338925562;ALX1:0.162104744455;POU5F1:0.15788646019;TAL1_TCF{3,4,12}:0.122369886735;STAT2,4,6:0.113991039475;SOX2:0.103188929664;CREB1:0.0852625586102;LMO2:0.0509632862859;OCT4_SOX2{dimer}:0.0362956179025;AHR_ARNT_ARNT2:0.0308755454602;SREBF1,2:0.0040461758473;ARID5B:0.00135231065989;MYB:-0.0193576424345;ATF2:-0.0209590372004;STAT5{A,B}:-0.0338614889445;NR3C1:-0.0510722992528;FOXP1:-0.0733995604976;MYFfamily:-0.145959289279;NKX2-3_NKX2-5:-0.180042941289;NR5A1,2:-0.190217362724;NANOG:-0.191365027353;HAND1,2:-0.195481372432;SMAD1..7,9:-0.199687961304;EP300:-0.203077118737;HNF4A_NR2F1,2:-0.207236382236;POU2F1..3:-0.210522478279;NRF1:-0.220109284579;PITX1..3:-0.227060015954;HOX{A6,A7,B6,B7}:-0.245586751648;HNF1A:-0.250290616476;ZNF238:-0.250470245323;FOSL2:-0.254187235521;E2F1..5:-0.268404123571;ZNF143:-0.273656882781;ZNF148:-0.28253422647;AR:-0.290415375657;GLI1..3:-0.293208193973;JUN:-0.298395942003;DBP:-0.302347296036;ATF6:-0.318785061463;HLF:-0.329703431321;MTF1:-0.333231399871;NFE2L1:-0.35648280863;GCM1,2:-0.357107656261;ATF4:-0.370251631833;GATA4:-0.378179042179;BACH2:-0.378762932964;MAFB:-0.383028569622;NKX3-1:-0.388138250374;HBP1_HMGB_SSRP1_UBTF:-0.405361503657;ESR1:-0.405901000715;NHLH1,2:-0.435745021565;TFAP4:-0.441333015454;HMGA1,2:-0.466409290433;FOS_FOS{B,L1}_JUN{B,D}:-0.468121966207;NFE2L2:-0.475394147896;GFI1:-0.501590483917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.521885450681;RFX1:-0.547749317051;SRF:-0.548876825863;NFY{A,B,C}:-0.549042462665;NFE2:-0.550705534725;RREB1:-0.570033347265;ZNF384:-0.611882509358;PAX8:-0.618440268493;TP53:-0.646786362441;MZF1:-0.648834545966;CDC5L:-0.667776574742;AIRE:-0.69130593759;FOXM1:-0.711038771767;MEF2{A,B,C,D}:-0.712200190613;ALX4:-0.728701771532;SOX{8,9,10}:-0.741829076582;REST:-0.747139746921;EN1,2:-0.798631972524;TFCP2:-0.823939544727;HOX{A5,B5}:-0.826753024992;KLF4:-0.846593925363;EBF1:-0.877236734824;LHX3,4:-0.897507493159;ZNF423:-0.901827728325;PRDM1:-0.9128483188;ZBTB6:-0.91755638621;EVI1:-0.926091972398;PAX5:-0.941498364198;HIF1A:-0.949380481646;GFI1B:-0.957512160805;ZFP161:-0.958694373519;EGR1..3:-0.979495858545;MTE{core}:-0.98260245819;MED-1{core}:-0.997416033221;PPARG:-1.03927520546;ONECUT1,2:-1.04995243991;NKX3-2:-1.11445051696;XBP1:-1.12147611008;NR6A1:-1.13182127989;MAZ:-1.13237807482;PATZ1:-1.13891468403;HOX{A4,D4}:-1.14538897784;TLX1..3_NFIC{dimer}:-1.15052367054;HIC1:-1.20401080846;HSF1,2:-1.20650793301;GTF2I:-1.22917040339;TBP:-1.25282547436;FOXL1:-1.26411405364;TOPORS:-1.26706594834;SOX17:-1.26820995039;HOXA9_MEIS1:-1.28879535753;TEF:-1.35417147788;MYBL2:-1.36319773552;GZF1:-1.36978356935;POU6F1:-1.3951193024;ZIC1..3:-1.39840212091;TFAP2B:-1.41501417202;RXR{A,B,G}:-1.41657887095;UFEwm:-1.42819716992;GTF2A1,2:-1.45884318189;bHLH_family:-1.59272839041;TFDP1:-1.60191019792;XCPE1{core}:-1.61911374772;POU3F1..4:-1.62133123343;TEAD1:-1.73919240384;SP1:-1.80790813062;ESRRA:-1.96028045974;TFAP2{A,C}:-2.23555771947;IKZF1:-2.42812314463;PAX1,9:-2.70890168701 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12201-129C5;search_select_hide=table117:FF:12201-129C5 | |||
}} | }} |
Latest revision as of 18:34, 4 June 2020
Name: | CD8+ T Cells (pluriselect), donor090612, donation1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12182,RDhi10017 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12182
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12182
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.17 |
10 | 10 | 0.03 |
100 | 100 | 0.917 |
101 | 101 | 0.247 |
102 | 102 | 0.88 |
103 | 103 | 0.271 |
104 | 104 | 0.385 |
105 | 105 | 0.0699 |
106 | 106 | 0.32 |
107 | 107 | 0.876 |
108 | 108 | 0.84 |
109 | 109 | 0.102 |
11 | 11 | 0.0629 |
110 | 110 | 0.411 |
111 | 111 | 0.225 |
112 | 112 | 0.148 |
113 | 113 | 0.147 |
114 | 114 | 0.0899 |
115 | 115 | 0.136 |
116 | 116 | 0.982 |
117 | 117 | 0.0206 |
118 | 118 | 0.436 |
119 | 119 | 0.297 |
12 | 12 | 0.942 |
120 | 120 | 0.311 |
121 | 121 | 0.783 |
122 | 122 | 0.371 |
123 | 123 | 0.082 |
124 | 124 | 0.0648 |
125 | 125 | 0.984 |
126 | 126 | 0.16 |
127 | 127 | 0.3 |
128 | 128 | 0.342 |
129 | 129 | 0.469 |
13 | 13 | 0.638 |
130 | 130 | 0.853 |
131 | 131 | 0.614 |
132 | 132 | 0.932 |
133 | 133 | 0.681 |
134 | 134 | 0.757 |
135 | 135 | 0.125 |
136 | 136 | 0.611 |
137 | 137 | 0.0957 |
138 | 138 | 0.3 |
139 | 139 | 0.00591 |
14 | 14 | 0.333 |
140 | 140 | 0.0961 |
141 | 141 | 0.625 |
142 | 142 | 0.804 |
143 | 143 | 2.42703e-5 |
144 | 144 | 0.826 |
145 | 145 | 0.318 |
146 | 146 | 0.0996 |
147 | 147 | 0.0659 |
148 | 148 | 0.0535 |
149 | 149 | 0.54 |
15 | 15 | 0.0508 |
150 | 150 | 0.646 |
151 | 151 | 0.203 |
152 | 152 | 0.626 |
153 | 153 | 0.884 |
154 | 154 | 0.894 |
155 | 155 | 0.0777 |
156 | 156 | 0.528 |
157 | 157 | 0.593 |
158 | 158 | 0.186 |
159 | 159 | 0.223 |
16 | 16 | 0.575 |
160 | 160 | 0.458 |
161 | 161 | 0.34 |
162 | 162 | 0.394 |
163 | 163 | 0.824 |
164 | 164 | 0.476 |
165 | 165 | 0.201 |
166 | 166 | 0.689 |
167 | 167 | 0.326 |
168 | 168 | 0.112 |
169 | 169 | 0.353 |
17 | 17 | 0.483 |
18 | 18 | 0.395 |
19 | 19 | 0.915 |
2 | 2 | 0.492 |
20 | 20 | 0.547 |
21 | 21 | 0.345 |
22 | 22 | 0.743 |
23 | 23 | 0.521 |
24 | 24 | 0.471 |
25 | 25 | 0.0736 |
26 | 26 | 0.384 |
27 | 27 | 0.0492 |
28 | 28 | 0.549 |
29 | 29 | 0.212 |
3 | 3 | 0.0498 |
30 | 30 | 0.719 |
31 | 31 | 0.746 |
32 | 32 | 0.252 |
33 | 33 | 0.421 |
34 | 34 | 0.727 |
35 | 35 | 0.0561 |
36 | 36 | 0.0137 |
37 | 37 | 0.213 |
38 | 38 | 0.525 |
39 | 39 | 0.772 |
4 | 4 | 0.766 |
40 | 40 | 0.466 |
41 | 41 | 0.113 |
42 | 42 | 0.0674 |
43 | 43 | 0.176 |
44 | 44 | 0.527 |
45 | 45 | 0.911 |
46 | 46 | 0.0667 |
47 | 47 | 0.108 |
48 | 48 | 0.162 |
49 | 49 | 0.0972 |
5 | 5 | 0.113 |
50 | 50 | 0.691 |
51 | 51 | 0.515 |
52 | 52 | 0.637 |
53 | 53 | 0.159 |
54 | 54 | 0.449 |
55 | 55 | 0.167 |
56 | 56 | 0.543 |
57 | 57 | 0.454 |
58 | 58 | 0.0353 |
59 | 59 | 0.247 |
6 | 6 | 0.773 |
60 | 60 | 0.244 |
61 | 61 | 0.177 |
62 | 62 | 0.0125 |
63 | 63 | 0.497 |
64 | 64 | 0.192 |
65 | 65 | 0.473 |
66 | 66 | 0.924 |
67 | 67 | 0.897 |
68 | 68 | 0.81 |
69 | 69 | 0.784 |
7 | 7 | 0.146 |
70 | 70 | 0.0144 |
71 | 71 | 0.0621 |
72 | 72 | 0.129 |
73 | 73 | 0.68 |
74 | 74 | 0.241 |
75 | 75 | 0.0493 |
76 | 76 | 0.432 |
77 | 77 | 0.98 |
78 | 78 | 0.17 |
79 | 79 | 0.351 |
8 | 8 | 0.525 |
80 | 80 | 0.00737 |
81 | 81 | 0.282 |
82 | 82 | 0.0483 |
83 | 83 | 0.732 |
84 | 84 | 0.408 |
85 | 85 | 0.634 |
86 | 86 | 0.28 |
87 | 87 | 0.938 |
88 | 88 | 0.88 |
89 | 89 | 0.864 |
9 | 9 | 0.321 |
90 | 90 | 0.0278 |
91 | 91 | 0.621 |
92 | 92 | 0.121 |
93 | 93 | 0.153 |
94 | 94 | 0.0488 |
95 | 95 | 0.0468 |
96 | 96 | 0.0841 |
97 | 97 | 0.463 |
98 | 98 | 0.177 |
99 | 99 | 0.323 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12182
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)