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{{f5samples
{{f5samples
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Line 35: Line 42:
|fonse_treatment_closure=
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|name=CD19+ B Cells (pluriselect), donor090612, donation1
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|namespace=FANTOM5
Line 42: Line 61:
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|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=1.47875
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Line 69: Line 92:
|sample_ethnicity=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.93792864650203e-227!GO:0043227;membrane-bound organelle;2.15188711363114e-207!GO:0043231;intracellular membrane-bound organelle;4.63909019817769e-207!GO:0043226;organelle;1.27285289628713e-193!GO:0043229;intracellular organelle;6.07566348538857e-193!GO:0005737;cytoplasm;9.15400878909486e-131!GO:0044422;organelle part;1.63523459534723e-115!GO:0044446;intracellular organelle part;7.74303192810102e-114!GO:0005634;nucleus;3.90834998416499e-107!GO:0032991;macromolecular complex;2.01478344153595e-100!GO:0044444;cytoplasmic part;9.27528185730016e-99!GO:0043170;macromolecule metabolic process;4.74386751300675e-95!GO:0044237;cellular metabolic process;1.51367865624733e-94!GO:0044238;primary metabolic process;1.18340496258123e-90!GO:0030529;ribonucleoprotein complex;8.97330965017113e-84!GO:0003723;RNA binding;2.6798467590841e-79!GO:0044428;nuclear part;6.71104033754773e-78!GO:0043233;organelle lumen;3.20109343379451e-68!GO:0031974;membrane-enclosed lumen;3.20109343379451e-68!GO:0010467;gene expression;3.44325324700243e-68!GO:0043283;biopolymer metabolic process;1.21256700388678e-67!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.97851881647584e-63!GO:0005739;mitochondrion;2.36373469577779e-57!GO:0006396;RNA processing;9.49027475742879e-56!GO:0043234;protein complex;3.16028320946417e-51!GO:0006412;translation;9.12119762893351e-51!GO:0031981;nuclear lumen;2.49294682700589e-47!GO:0005515;protein binding;9.29892833527395e-47!GO:0003676;nucleic acid binding;2.51154984568999e-46!GO:0005840;ribosome;2.85142702900246e-46!GO:0033036;macromolecule localization;6.56193355757404e-46!GO:0015031;protein transport;8.06027372715478e-45!GO:0016071;mRNA metabolic process;9.27253212357439e-45!GO:0045184;establishment of protein localization;3.09746122658004e-43!GO:0008104;protein localization;2.51099885330139e-42!GO:0019538;protein metabolic process;2.60115455749914e-40!GO:0008380;RNA splicing;3.74331577656883e-40!GO:0003735;structural constituent of ribosome;4.92488781883738e-40!GO:0044429;mitochondrial part;2.11248047202039e-39!GO:0031090;organelle membrane;5.02089203993175e-39!GO:0016070;RNA metabolic process;2.36047307927118e-38!GO:0044267;cellular protein metabolic process;5.96355458615702e-38!GO:0006397;mRNA processing;1.0029715167237e-37!GO:0031967;organelle envelope;1.45481090275082e-37!GO:0031975;envelope;3.12482114016069e-37!GO:0033279;ribosomal subunit;4.39315750158035e-37!GO:0044260;cellular macromolecule metabolic process;5.44932949502367e-37!GO:0009059;macromolecule biosynthetic process;1.11369117791161e-36!GO:0005829;cytosol;1.88771160241313e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.07287050938924e-32!GO:0005654;nucleoplasm;6.57910103786839e-32!GO:0046907;intracellular transport;8.19481611322681e-31!GO:0065003;macromolecular complex assembly;1.84911459441482e-30!GO:0044249;cellular biosynthetic process;2.13238997136722e-30!GO:0006259;DNA metabolic process;6.20419017764941e-30!GO:0005681;spliceosome;1.01831827233105e-29!GO:0009058;biosynthetic process;1.3803443120503e-29!GO:0006886;intracellular protein transport;3.31013234849037e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.31013234849037e-28!GO:0016043;cellular component organization and biogenesis;1.54587536954905e-27!GO:0044445;cytosolic part;1.39883220572493e-26!GO:0022607;cellular component assembly;4.31000987709731e-26!GO:0044451;nucleoplasm part;2.61464264622123e-25!GO:0019866;organelle inner membrane;1.2403787245886e-24!GO:0005740;mitochondrial envelope;1.51280148600327e-24!GO:0031966;mitochondrial membrane;2.61425814666887e-23!GO:0006996;organelle organization and biogenesis;7.1843511586954e-23!GO:0051649;establishment of cellular localization;3.1636963324891e-22!GO:0005743;mitochondrial inner membrane;3.74432080865435e-22!GO:0051641;cellular localization;7.36380989934476e-22!GO:0006119;oxidative phosphorylation;5.37189575715905e-21!GO:0022618;protein-RNA complex assembly;2.00478240053016e-20!GO:0006512;ubiquitin cycle;5.73507878654886e-20!GO:0044265;cellular macromolecule catabolic process;2.20068259441286e-19!GO:0015935;small ribosomal subunit;2.24450850745151e-19!GO:0019941;modification-dependent protein catabolic process;4.40600070611122e-19!GO:0043632;modification-dependent macromolecule catabolic process;4.40600070611122e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.75806756152548e-19!GO:0000166;nucleotide binding;4.83502085321207e-19!GO:0006511;ubiquitin-dependent protein catabolic process;7.73242780089498e-19!GO:0044257;cellular protein catabolic process;1.06794682130239e-18!GO:0015934;large ribosomal subunit;1.32102870796921e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.47313172129431e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.78930271644058e-18!GO:0016462;pyrophosphatase activity;2.26993124735958e-18!GO:0044455;mitochondrial membrane part;3.79526684139379e-18!GO:0043228;non-membrane-bound organelle;3.81316855534258e-18!GO:0043232;intracellular non-membrane-bound organelle;3.81316855534258e-18!GO:0017111;nucleoside-triphosphatase activity;3.90433777749132e-18!GO:0008134;transcription factor binding;4.68514622877431e-18!GO:0043285;biopolymer catabolic process;8.26094986873412e-18!GO:0031980;mitochondrial lumen;1.12166337270979e-17!GO:0005759;mitochondrial matrix;1.12166337270979e-17!GO:0016604;nuclear body;1.26535971762587e-17!GO:0016874;ligase activity;3.78160453972685e-17!GO:0006974;response to DNA damage stimulus;8.674519203972e-17!GO:0005730;nucleolus;1.78335186358788e-16!GO:0006915;apoptosis;9.49473453546776e-16!GO:0012501;programmed cell death;9.67285835722024e-16!GO:0005746;mitochondrial respiratory chain;1.40064562660297e-15!GO:0006457;protein folding;2.89381428250351e-15!GO:0050794;regulation of cellular process;4.28423179948221e-15!GO:0009057;macromolecule catabolic process;4.51745156076128e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;5.87392724082047e-15!GO:0000375;RNA splicing, via transesterification reactions;5.87392724082047e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.87392724082047e-15!GO:0008135;translation factor activity, nucleic acid binding;6.18908405851341e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;6.48482389647958e-15!GO:0012505;endomembrane system;9.19535409214761e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.10761738424405e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.54435939766456e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.31230209350489e-14!GO:0051276;chromosome organization and biogenesis;2.39237728263708e-14!GO:0006281;DNA repair;2.56850026198013e-14!GO:0006323;DNA packaging;2.64727635196217e-14!GO:0043412;biopolymer modification;2.64924268068006e-14!GO:0019222;regulation of metabolic process;3.00810811546436e-14!GO:0006605;protein targeting;4.62319936721309e-14!GO:0008219;cell death;5.13268136088331e-14!GO:0016265;death;5.13268136088331e-14!GO:0016607;nuclear speck;7.92202371419359e-14!GO:0030163;protein catabolic process;9.29291439423484e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.15277778827792e-13!GO:0005635;nuclear envelope;1.61935708728699e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.7123428494505e-13!GO:0003954;NADH dehydrogenase activity;1.7123428494505e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.7123428494505e-13!GO:0044248;cellular catabolic process;2.38005296959614e-13!GO:0032553;ribonucleotide binding;2.67821255771251e-13!GO:0032555;purine ribonucleotide binding;2.67821255771251e-13!GO:0005761;mitochondrial ribosome;4.65499263390992e-13!GO:0000313;organellar ribosome;4.65499263390992e-13!GO:0031965;nuclear membrane;5.16722133849535e-13!GO:0016887;ATPase activity;7.0764757068525e-13!GO:0031323;regulation of cellular metabolic process;7.67822374967092e-13!GO:0006413;translational initiation;1.13991153618278e-12!GO:0017076;purine nucleotide binding;1.34464209336482e-12!GO:0003712;transcription cofactor activity;1.48335118886295e-12!GO:0042254;ribosome biogenesis and assembly;1.91284707305796e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.80384828817258e-12!GO:0042773;ATP synthesis coupled electron transport;2.80384828817258e-12!GO:0042623;ATPase activity, coupled;3.98307298452253e-12!GO:0005694;chromosome;5.11680976681348e-12!GO:0006446;regulation of translational initiation;5.13890540781625e-12!GO:0006464;protein modification process;7.09414764767988e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.93755756996691e-12!GO:0045271;respiratory chain complex I;8.93755756996691e-12!GO:0005747;mitochondrial respiratory chain complex I;8.93755756996691e-12!GO:0005524;ATP binding;1.51446010656537e-11!GO:0003743;translation initiation factor activity;1.87056647716676e-11!GO:0006350;transcription;2.39950732056331e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.66253628913355e-11!GO:0032559;adenyl ribonucleotide binding;3.77147644999188e-11!GO:0006913;nucleocytoplasmic transport;6.41231497268691e-11!GO:0007049;cell cycle;6.41449788902194e-11!GO:0044453;nuclear membrane part;7.82380929929111e-11!GO:0010468;regulation of gene expression;7.84897941986092e-11!GO:0043687;post-translational protein modification;1.00376509792393e-10!GO:0051169;nuclear transport;1.00985657343028e-10!GO:0048770;pigment granule;1.0100017809992e-10!GO:0042470;melanosome;1.0100017809992e-10!GO:0009719;response to endogenous stimulus;1.55669405214227e-10!GO:0044427;chromosomal part;1.93192044505208e-10!GO:0004386;helicase activity;1.98944330181297e-10!GO:0042981;regulation of apoptosis;2.04294171863435e-10!GO:0030554;adenyl nucleotide binding;2.3199318872898e-10!GO:0008639;small protein conjugating enzyme activity;2.68094253508716e-10!GO:0016568;chromatin modification;2.94863535045373e-10!GO:0043067;regulation of programmed cell death;3.00929813028758e-10!GO:0006333;chromatin assembly or disassembly;3.2758714980386e-10!GO:0004842;ubiquitin-protein ligase activity;4.05856180431653e-10!GO:0051082;unfolded protein binding;4.4931510047344e-10!GO:0051186;cofactor metabolic process;4.9339960077395e-10!GO:0065004;protein-DNA complex assembly;7.49586456238179e-10!GO:0006403;RNA localization;7.54002091434218e-10!GO:0050657;nucleic acid transport;7.94012460417309e-10!GO:0051236;establishment of RNA localization;7.94012460417309e-10!GO:0050658;RNA transport;7.94012460417309e-10!GO:0050789;regulation of biological process;8.26001219751811e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.97332571653758e-10!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00529928482033e-09!GO:0005643;nuclear pore;1.04558215584061e-09!GO:0016192;vesicle-mediated transport;1.24292033627699e-09!GO:0048193;Golgi vesicle transport;1.28134038621285e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.46685573170107e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.56468277905333e-09!GO:0008026;ATP-dependent helicase activity;1.76077158664723e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.80253247337426e-09!GO:0003713;transcription coactivator activity;2.00292841395142e-09!GO:0005794;Golgi apparatus;2.35610856695459e-09!GO:0019787;small conjugating protein ligase activity;2.55677722331234e-09!GO:0019829;cation-transporting ATPase activity;3.40150582820131e-09!GO:0006399;tRNA metabolic process;3.65913549533793e-09!GO:0005783;endoplasmic reticulum;3.98513822686283e-09!GO:0008270;zinc ion binding;5.26113216132252e-09!GO:0016072;rRNA metabolic process;5.37301234339467e-09!GO:0008565;protein transporter activity;5.75656837132067e-09!GO:0006364;rRNA processing;6.2035601319724e-09!GO:0065002;intracellular protein transport across a membrane;6.55478153855497e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.93179634970708e-09!GO:0009259;ribonucleotide metabolic process;1.03655418215013e-08!GO:0022402;cell cycle process;1.35394194477266e-08!GO:0044432;endoplasmic reticulum part;1.39328575160554e-08!GO:0032774;RNA biosynthetic process;1.63334376239454e-08!GO:0006351;transcription, DNA-dependent;2.09329545633997e-08!GO:0043566;structure-specific DNA binding;2.26359477906439e-08!GO:0017038;protein import;2.29389422828984e-08!GO:0006164;purine nucleotide biosynthetic process;2.58371878007375e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.58381694951603e-08!GO:0009260;ribonucleotide biosynthetic process;2.59716263697782e-08!GO:0051028;mRNA transport;2.72242178200481e-08!GO:0005839;proteasome core complex (sensu Eukaryota);2.84717267863046e-08!GO:0045449;regulation of transcription;2.84717267863046e-08!GO:0006732;coenzyme metabolic process;2.9863488852911e-08!GO:0006163;purine nucleotide metabolic process;3.59112011259621e-08!GO:0046930;pore complex;3.70763368428495e-08!GO:0015986;ATP synthesis coupled proton transport;3.74705958823608e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.74705958823608e-08!GO:0000785;chromatin;4.13620324217622e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.14055024084299e-08!GO:0006366;transcription from RNA polymerase II promoter;6.43907566273505e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.88340014163012e-08!GO:0005768;endosome;7.82061734971556e-08!GO:0004298;threonine endopeptidase activity;8.41156266714665e-08!GO:0009150;purine ribonucleotide metabolic process;1.00861513429633e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.01467868322516e-07!GO:0016787;hydrolase activity;1.24094769235255e-07!GO:0016881;acid-amino acid ligase activity;1.89822576299739e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.00765794517718e-07!GO:0000245;spliceosome assembly;2.03331297590567e-07!GO:0051726;regulation of cell cycle;2.10092674755837e-07!GO:0051246;regulation of protein metabolic process;2.11241982492834e-07!GO:0000074;regulation of progression through cell cycle;2.65531285812755e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.77747358068416e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.80570169283293e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.85561254750592e-07!GO:0009060;aerobic respiration;3.17085429587472e-07!GO:0006754;ATP biosynthetic process;3.25491015584229e-07!GO:0006753;nucleoside phosphate metabolic process;3.25491015584229e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.42006402951128e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.43307114870931e-07!GO:0005789;endoplasmic reticulum membrane;3.54200104921702e-07!GO:0016563;transcription activator activity;3.57664558144579e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.47344433932471e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.47344433932471e-07!GO:0046914;transition metal ion binding;4.47344433932471e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.93867056603058e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.93867056603058e-07!GO:0003697;single-stranded DNA binding;7.49512487415953e-07!GO:0006793;phosphorus metabolic process;8.37954919981508e-07!GO:0006796;phosphate metabolic process;8.37954919981508e-07!GO:0009056;catabolic process;9.35907686095659e-07!GO:0006355;regulation of transcription, DNA-dependent;1.1464894874366e-06!GO:0006260;DNA replication;1.17495448194563e-06!GO:0006461;protein complex assembly;1.21076570571105e-06!GO:0032446;protein modification by small protein conjugation;1.39138993837542e-06!GO:0007243;protein kinase cascade;1.49145117771879e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.51779807206002e-06!GO:0045333;cellular respiration;1.57908811277883e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.72089335367615e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.72089335367615e-06!GO:0009141;nucleoside triphosphate metabolic process;1.73203473064611e-06!GO:0016779;nucleotidyltransferase activity;1.75946318954224e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.80474319141772e-06!GO:0006334;nucleosome assembly;1.86199790108861e-06!GO:0046034;ATP metabolic process;2.03349606494345e-06!GO:0065007;biological regulation;2.04345369300301e-06!GO:0031497;chromatin assembly;2.3082058434262e-06!GO:0045259;proton-transporting ATP synthase complex;2.32854694933867e-06!GO:0000151;ubiquitin ligase complex;2.53017621190336e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.59961183849447e-06!GO:0003677;DNA binding;2.82495671657276e-06!GO:0009055;electron carrier activity;2.86912755444232e-06!GO:0003724;RNA helicase activity;3.09749676350068e-06!GO:0016310;phosphorylation;3.09936525426597e-06!GO:0016567;protein ubiquitination;3.21277707093409e-06!GO:0043069;negative regulation of programmed cell death;3.9327984497336e-06!GO:0006401;RNA catabolic process;4.00327963621165e-06!GO:0016564;transcription repressor activity;4.0058477760319e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.18027384210852e-06!GO:0005770;late endosome;4.22561963326432e-06!GO:0031324;negative regulation of cellular metabolic process;4.36370083227776e-06!GO:0065009;regulation of a molecular function;5.62804812836024e-06!GO:0043066;negative regulation of apoptosis;5.63355856054629e-06!GO:0009615;response to virus;6.10100399439704e-06!GO:0051188;cofactor biosynthetic process;6.10100399439704e-06!GO:0006099;tricarboxylic acid cycle;6.82481160709419e-06!GO:0046356;acetyl-CoA catabolic process;6.82481160709419e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.89591068504154e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.25772335025548e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.25772335025548e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.25772335025548e-06!GO:0006613;cotranslational protein targeting to membrane;7.78448454008103e-06!GO:0048475;coated membrane;8.56831126681408e-06!GO:0030117;membrane coat;8.56831126681408e-06!GO:0006084;acetyl-CoA metabolic process;1.29871131679719e-05!GO:0007005;mitochondrion organization and biogenesis;1.3466596406199e-05!GO:0005773;vacuole;1.3733098025916e-05!GO:0043038;amino acid activation;1.4285779426938e-05!GO:0006418;tRNA aminoacylation for protein translation;1.4285779426938e-05!GO:0043039;tRNA aminoacylation;1.4285779426938e-05!GO:0045786;negative regulation of progression through cell cycle;1.44872791524197e-05!GO:0006417;regulation of translation;1.48549995245966e-05!GO:0016481;negative regulation of transcription;1.54499631452179e-05!GO:0019899;enzyme binding;1.64437877591908e-05!GO:0051170;nuclear import;1.80781943200397e-05!GO:0005793;ER-Golgi intermediate compartment;1.87558130497677e-05!GO:0006916;anti-apoptosis;2.22320179655729e-05!GO:0044440;endosomal part;2.31134223995453e-05!GO:0010008;endosome membrane;2.31134223995453e-05!GO:0000323;lytic vacuole;2.51019367482046e-05!GO:0005764;lysosome;2.51019367482046e-05!GO:0051168;nuclear export;2.77156494007482e-05!GO:0048523;negative regulation of cellular process;2.81938297015928e-05!GO:0006606;protein import into nucleus;2.8653218957741e-05!GO:0030120;vesicle coat;3.07530044881017e-05!GO:0030662;coated vesicle membrane;3.07530044881017e-05!GO:0009117;nucleotide metabolic process;3.45751731884104e-05!GO:0009109;coenzyme catabolic process;4.44410132199357e-05!GO:0006752;group transfer coenzyme metabolic process;4.64503099535837e-05!GO:0043065;positive regulation of apoptosis;4.67808411244582e-05!GO:0009108;coenzyme biosynthetic process;4.75847590127657e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.26958219928617e-05!GO:0015399;primary active transmembrane transporter activity;5.26958219928617e-05!GO:0003924;GTPase activity;5.76319382318283e-05!GO:0006402;mRNA catabolic process;6.43516377251298e-05!GO:0006612;protein targeting to membrane;6.97022010087493e-05!GO:0043068;positive regulation of programmed cell death;7.01886186840327e-05!GO:0042613;MHC class II protein complex;7.04458780688003e-05!GO:0005813;centrosome;7.42646764645182e-05!GO:0000278;mitotic cell cycle;7.6046569744559e-05!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;7.6046569744559e-05!GO:0016740;transferase activity;7.61646377795155e-05!GO:0008186;RNA-dependent ATPase activity;7.827567581753e-05!GO:0051187;cofactor catabolic process;8.0539858550268e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.35645788336176e-05!GO:0044431;Golgi apparatus part;0.000110795429779784!GO:0005667;transcription factor complex;0.000129153575086137!GO:0003690;double-stranded DNA binding;0.000134793601053727!GO:0031326;regulation of cellular biosynthetic process;0.000136217402320926!GO:0006917;induction of apoptosis;0.000137589593455883!GO:0005762;mitochondrial large ribosomal subunit;0.000157977259744734!GO:0000315;organellar large ribosomal subunit;0.000157977259744734!GO:0031072;heat shock protein binding;0.000168981474254034!GO:0016197;endosome transport;0.000186943067142392!GO:0000314;organellar small ribosomal subunit;0.000195858110089734!GO:0005763;mitochondrial small ribosomal subunit;0.000195858110089734!GO:0012502;induction of programmed cell death;0.00019636968858605!GO:0009892;negative regulation of metabolic process;0.000205773164737197!GO:0008033;tRNA processing;0.000213751454091829!GO:0005885;Arp2/3 protein complex;0.000235197704054978!GO:0004004;ATP-dependent RNA helicase activity;0.00025002473587095!GO:0005815;microtubule organizing center;0.000257047446177375!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000284002574129593!GO:0000786;nucleosome;0.000292371841902086!GO:0008234;cysteine-type peptidase activity;0.00029996274643828!GO:0006818;hydrogen transport;0.000303537820663162!GO:0043021;ribonucleoprotein binding;0.000330567227005106!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000335960655869096!GO:0015992;proton transport;0.000342731704167339!GO:0003714;transcription corepressor activity;0.000342731704167339!GO:0016251;general RNA polymerase II transcription factor activity;0.00035043775276303!GO:0008654;phospholipid biosynthetic process;0.000401325222101158!GO:0022890;inorganic cation transmembrane transporter activity;0.000409675343619969!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000421183982280487!GO:0008632;apoptotic program;0.00044347311455095!GO:0043681;protein import into mitochondrion;0.000445072190959288!GO:0005525;GTP binding;0.00044558875608713!GO:0042113;B cell activation;0.000445853261924796!GO:0006310;DNA recombination;0.00044958195781337!GO:0003899;DNA-directed RNA polymerase activity;0.000466420247661805!GO:0006352;transcription initiation;0.000492439203766641!GO:0006261;DNA-dependent DNA replication;0.000554359918274994!GO:0048519;negative regulation of biological process;0.000563836480426234!GO:0043492;ATPase activity, coupled to movement of substances;0.000589985556703421!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000602433981717445!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00060734618411823!GO:0016363;nuclear matrix;0.000652213578572262!GO:0000087;M phase of mitotic cell cycle;0.000674360748421568!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0007352387163338!GO:0008168;methyltransferase activity;0.000747414986017125!GO:0050790;regulation of catalytic activity;0.000762153538885171!GO:0007242;intracellular signaling cascade;0.000773952873985191!GO:0016741;transferase activity, transferring one-carbon groups;0.000774407613516858!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.000807670308050899!GO:0030384;phosphoinositide metabolic process;0.000819874255029465!GO:0003729;mRNA binding;0.000820593668229373!GO:0051427;hormone receptor binding;0.000838055395768574!GO:0009889;regulation of biosynthetic process;0.00086164274224314!GO:0007264;small GTPase mediated signal transduction;0.000876433165257949!GO:0043623;cellular protein complex assembly;0.000933325098229885!GO:0007067;mitosis;0.000943299381841832!GO:0031902;late endosome membrane;0.000991753254015156!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00100467795898172!GO:0051301;cell division;0.00107404298826297!GO:0004518;nuclease activity;0.00107992741374114!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108135337615944!GO:0003711;transcription elongation regulator activity;0.00109649663181517!GO:0009967;positive regulation of signal transduction;0.00115794840198124!GO:0006950;response to stress;0.00122558618821104!GO:0022403;cell cycle phase;0.00127031850052085!GO:0051252;regulation of RNA metabolic process;0.00139765993102103!GO:0035257;nuclear hormone receptor binding;0.00144254064155095!GO:0043488;regulation of mRNA stability;0.00148027847183405!GO:0043487;regulation of RNA stability;0.00148027847183405!GO:0045892;negative regulation of transcription, DNA-dependent;0.00155543665175134!GO:0006383;transcription from RNA polymerase III promoter;0.00157681984869361!GO:0005048;signal sequence binding;0.00157681984869361!GO:0004527;exonuclease activity;0.0016925972613142!GO:0005798;Golgi-associated vesicle;0.0016925972613142!GO:0005769;early endosome;0.0017315291404331!GO:0007034;vacuolar transport;0.00174703747380618!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00186133356150736!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00190413737344813!GO:0015002;heme-copper terminal oxidase activity;0.00190413737344813!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00190413737344813!GO:0004129;cytochrome-c oxidase activity;0.00190413737344813!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190413737344813!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190413737344813!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190413737344813!GO:0048500;signal recognition particle;0.00200762292406555!GO:0048471;perinuclear region of cytoplasm;0.00205365330266677!GO:0031252;leading edge;0.00207043404993472!GO:0009165;nucleotide biosynthetic process;0.00221933761450162!GO:0046489;phosphoinositide biosynthetic process;0.00232034568339379!GO:0044452;nucleolar part;0.00257696895138327!GO:0006405;RNA export from nucleus;0.00273240855823337!GO:0048522;positive regulation of cellular process;0.00278946657275146!GO:0007006;mitochondrial membrane organization and biogenesis;0.00289499482355384!GO:0046474;glycerophospholipid biosynthetic process;0.00289499482355384!GO:0032561;guanyl ribonucleotide binding;0.00290733018957863!GO:0019001;guanyl nucleotide binding;0.00290733018957863!GO:0005637;nuclear inner membrane;0.00292865552307517!GO:0043087;regulation of GTPase activity;0.00303740720383195!GO:0004532;exoribonuclease activity;0.00312074040099892!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00312074040099892!GO:0008312;7S RNA binding;0.00312503791000268!GO:0008047;enzyme activator activity;0.00318914486546361!GO:0006414;translational elongation;0.00322106955223099!GO:0005774;vacuolar membrane;0.00340721413654481!GO:0006650;glycerophospholipid metabolic process;0.00344297348918784!GO:0000139;Golgi membrane;0.00346334852137812!GO:0005684;U2-dependent spliceosome;0.00375933147947912!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00375933147947912!GO:0045047;protein targeting to ER;0.00375933147947912!GO:0030433;ER-associated protein catabolic process;0.00390848763723653!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00390848763723653!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00390848763723653!GO:0007265;Ras protein signal transduction;0.00393493530593756!GO:0003725;double-stranded RNA binding;0.0040108280665222!GO:0016859;cis-trans isomerase activity;0.00402965258103427!GO:0006891;intra-Golgi vesicle-mediated transport;0.00428746567024433!GO:0008408;3'-5' exonuclease activity;0.00439361786119535!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00444152466902448!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00444152466902448!GO:0006289;nucleotide-excision repair;0.00452507484987147!GO:0051336;regulation of hydrolase activity;0.00462133224028959!GO:0051920;peroxiredoxin activity;0.00467654627336397!GO:0006839;mitochondrial transport;0.00467654627336397!GO:0030118;clathrin coat;0.00493120953842976!GO:0030518;steroid hormone receptor signaling pathway;0.00505723961751764!GO:0033116;ER-Golgi intermediate compartment membrane;0.00514315305800479!GO:0045454;cell redox homeostasis;0.00544105155028245!GO:0005741;mitochondrial outer membrane;0.00550434934669453!GO:0016584;nucleosome positioning;0.0055174706748919!GO:0019783;small conjugating protein-specific protease activity;0.00564257803382117!GO:0004674;protein serine/threonine kinase activity;0.00568910613056901!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00589122091426545!GO:0000279;M phase;0.00593278320597595!GO:0032259;methylation;0.00598493493378137!GO:0031625;ubiquitin protein ligase binding;0.00611631395002272!GO:0006302;double-strand break repair;0.0064925899314455!GO:0043414;biopolymer methylation;0.00666969304462153!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00670036539277954!GO:0006626;protein targeting to mitochondrion;0.00676975311104449!GO:0004843;ubiquitin-specific protease activity;0.00689427478062847!GO:0045947;negative regulation of translational initiation;0.00704371709200553!GO:0051789;response to protein stimulus;0.00704371709200553!GO:0006986;response to unfolded protein;0.00704371709200553!GO:0044437;vacuolar part;0.00725740293052569!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00729735493040502!GO:0042802;identical protein binding;0.0075336992690207!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00765649920815296!GO:0005765;lysosomal membrane;0.00783908000700812!GO:0005669;transcription factor TFIID complex;0.00860238922956777!GO:0046649;lymphocyte activation;0.0093358348222694!GO:0006611;protein export from nucleus;0.00937735550932563!GO:0032940;secretion by cell;0.00941066953231943!GO:0031968;organelle outer membrane;0.00946427570669428!GO:0045045;secretory pathway;0.00946427570669428!GO:0000118;histone deacetylase complex;0.00947167860506911!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00998814961154482!GO:0030119;AP-type membrane coat adaptor complex;0.0100155649085152!GO:0002376;immune system process;0.0100577954521474!GO:0060090;molecular adaptor activity;0.0102664274949634!GO:0016605;PML body;0.0103981570817975!GO:0007041;lysosomal transport;0.0106787307751446!GO:0030658;transport vesicle membrane;0.0106787307751446!GO:0019867;outer membrane;0.0107024528936038!GO:0006376;mRNA splice site selection;0.0107402150472029!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0107402150472029!GO:0005657;replication fork;0.010844315262504!GO:0031901;early endosome membrane;0.0111723177898726!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0111852730036102!GO:0015630;microtubule cytoskeleton;0.0112596218814924!GO:0046467;membrane lipid biosynthetic process;0.0114705280478713!GO:0000178;exosome (RNase complex);0.0115354750479371!GO:0030258;lipid modification;0.0116348513256338!GO:0030041;actin filament polymerization;0.0116861786285171!GO:0015923;mannosidase activity;0.0119738952450609!GO:0004221;ubiquitin thiolesterase activity;0.0119738952450609!GO:0030867;rough endoplasmic reticulum membrane;0.0120095945440039!GO:0051087;chaperone binding;0.0120214509708136!GO:0016272;prefoldin complex;0.0121309397008968!GO:0002764;immune response-regulating signal transduction;0.0125670660738823!GO:0016853;isomerase activity;0.012577054464996!GO:0030663;COPI coated vesicle membrane;0.0125781730555369!GO:0030126;COPI vesicle coat;0.0125781730555369!GO:0030137;COPI-coated vesicle;0.0126293016945233!GO:0030131;clathrin adaptor complex;0.0128864818214094!GO:0018193;peptidyl-amino acid modification;0.0132364244762671!GO:0003746;translation elongation factor activity;0.0132925465965052!GO:0009116;nucleoside metabolic process;0.0137438007785645!GO:0003678;DNA helicase activity;0.0138218968973241!GO:0006607;NLS-bearing substrate import into nucleus;0.0140145019204278!GO:0031982;vesicle;0.0146104319859341!GO:0030521;androgen receptor signaling pathway;0.0147688324991273!GO:0009451;RNA modification;0.0148610373802201!GO:0032200;telomere organization and biogenesis;0.0148666233408968!GO:0000723;telomere maintenance;0.0148666233408968!GO:0030695;GTPase regulator activity;0.015338884948603!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0155365318316734!GO:0030880;RNA polymerase complex;0.0157911717579097!GO:0048002;antigen processing and presentation of peptide antigen;0.016501172896958!GO:0051539;4 iron, 4 sulfur cluster binding;0.016617842932396!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0167777249545479!GO:0006284;base-excision repair;0.017024725040132!GO:0000049;tRNA binding;0.0181842272598188!GO:0000119;mediator complex;0.0186789753732048!GO:0000175;3'-5'-exoribonuclease activity;0.0188158255510225!GO:0043281;regulation of caspase activity;0.0188860043039142!GO:0015980;energy derivation by oxidation of organic compounds;0.0189613787419892!GO:0006091;generation of precursor metabolites and energy;0.0189613787419892!GO:0015631;tubulin binding;0.019052586390187!GO:0019882;antigen processing and presentation;0.0196154832469816!GO:0051052;regulation of DNA metabolic process;0.0198362470571866!GO:0006672;ceramide metabolic process;0.0198362470571866!GO:0046128;purine ribonucleoside metabolic process;0.020086648126!GO:0042278;purine nucleoside metabolic process;0.020086648126!GO:0019883;antigen processing and presentation of endogenous antigen;0.0201702490858586!GO:0008139;nuclear localization sequence binding;0.0208123441036018!GO:0032395;MHC class II receptor activity;0.0209012055336392!GO:0006595;polyamine metabolic process;0.0209220688182611!GO:0006919;caspase activation;0.0212888440058964!GO:0008097;5S rRNA binding;0.0215528742167189!GO:0004197;cysteine-type endopeptidase activity;0.0217500199058296!GO:0003684;damaged DNA binding;0.0218243530654308!GO:0051540;metal cluster binding;0.0219170058279468!GO:0051536;iron-sulfur cluster binding;0.0219170058279468!GO:0030660;Golgi-associated vesicle membrane;0.0220378420480634!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0229817700421518!GO:0046966;thyroid hormone receptor binding;0.0230425242019098!GO:0045321;leukocyte activation;0.0230425242019098!GO:0048518;positive regulation of biological process;0.0232626041793218!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0241079447500556!GO:0000738;DNA catabolic process, exonucleolytic;0.0246481848819615!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0248768475543291!GO:0030522;intracellular receptor-mediated signaling pathway;0.0251014895709111!GO:0006338;chromatin remodeling;0.0254178559728981!GO:0005832;chaperonin-containing T-complex;0.025426569598904!GO:0050871;positive regulation of B cell activation;0.025426569598904!GO:0005869;dynactin complex;0.0259263581394905!GO:0043022;ribosome binding;0.0259403634618196!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0259958202854731!GO:0000209;protein polyubiquitination;0.0268100747784682!GO:0045730;respiratory burst;0.0268375994947255!GO:0048487;beta-tubulin binding;0.0269875792136674!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.027037832234936!GO:0019843;rRNA binding;0.027037832234936!GO:0002757;immune response-activating signal transduction;0.027037832234936!GO:0004540;ribonuclease activity;0.0272520279344035!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0274319309509218!GO:0000428;DNA-directed RNA polymerase complex;0.0274319309509218!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0275203590171866!GO:0005521;lamin binding;0.0277811414975313!GO:0031988;membrane-bound vesicle;0.028251803498294!GO:0022415;viral reproductive process;0.0285205745868307!GO:0047485;protein N-terminus binding;0.028612734352112!GO:0006914;autophagy;0.0289595683331348!GO:0006506;GPI anchor biosynthetic process;0.0292597221724696!GO:0016790;thiolester hydrolase activity;0.0293077242418878!GO:0051098;regulation of binding;0.0302621186005466!GO:0008180;signalosome;0.0304031876903536!GO:0019814;immunoglobulin complex;0.0304173878827569!GO:0019815;B cell receptor complex;0.0304173878827569!GO:0003682;chromatin binding;0.0313848740708027!GO:0004722;protein serine/threonine phosphatase activity;0.032195415922!GO:0000287;magnesium ion binding;0.0324460670320986!GO:0000059;protein import into nucleus, docking;0.0326747639884565!GO:0008017;microtubule binding;0.0331901003757769!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0334123262623579!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0334123262623579!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0334123262623579!GO:0032318;regulation of Ras GTPase activity;0.0335769082528939!GO:0031410;cytoplasmic vesicle;0.0340367966578051!GO:0051092;activation of NF-kappaB transcription factor;0.034170306766389!GO:0009119;ribonucleoside metabolic process;0.0345290027073439!GO:0008287;protein serine/threonine phosphatase complex;0.0347187722841507!GO:0005819;spindle;0.0352690524939652!GO:0004576;oligosaccharyl transferase activity;0.035491125081327!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0357131828367857!GO:0050853;B cell receptor signaling pathway;0.0358484176665849!GO:0006497;protein amino acid lipidation;0.0362204712949971!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0364399507396562!GO:0007050;cell cycle arrest;0.0364682491966021!GO:0043280;positive regulation of caspase activity;0.0365949361754547!GO:0051090;regulation of transcription factor activity;0.0367089820814183!GO:0035258;steroid hormone receptor binding;0.0376026718252574!GO:0042824;MHC class I peptide loading complex;0.0381379315348324!GO:0005070;SH3/SH2 adaptor activity;0.0381836810046587!GO:0030176;integral to endoplasmic reticulum membrane;0.0386619017178745!GO:0008538;proteasome activator activity;0.0387089776711153!GO:0009607;response to biotic stimulus;0.0395814050597319!GO:0008276;protein methyltransferase activity;0.0395814050597319!GO:0007004;telomere maintenance via telomerase;0.0398698340798592!GO:0031647;regulation of protein stability;0.0400086758740437!GO:0000303;response to superoxide;0.040622509617901!GO:0005784;translocon complex;0.0421071310401105!GO:0008250;oligosaccharyl transferase complex;0.0421764718092789!GO:0001726;ruffle;0.0422881695920783!GO:0000339;RNA cap binding;0.0429840768622324!GO:0042611;MHC protein complex;0.0435696110928018!GO:0005850;eukaryotic translation initiation factor 2 complex;0.044100620121122!GO:0046519;sphingoid metabolic process;0.0441208923347897!GO:0043550;regulation of lipid kinase activity;0.0441703531873967!GO:0000726;non-recombinational repair;0.0441990245971262!GO:0006406;mRNA export from nucleus;0.0443740676377452!GO:0006516;glycoprotein catabolic process;0.0451320167748584!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451752642608792!GO:0010257;NADH dehydrogenase complex assembly;0.0451752642608792!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451752642608792!GO:0050851;antigen receptor-mediated signaling pathway;0.0459978476626612!GO:0022406;membrane docking;0.046002370048675!GO:0048278;vesicle docking;0.046002370048675!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0464966890830888!GO:0000123;histone acetyltransferase complex;0.0469892453538951!GO:0045603;positive regulation of endothelial cell differentiation;0.0475403131119397!GO:0006354;RNA elongation;0.0478741836460048!GO:0030097;hemopoiesis;0.0478741836460048!GO:0046979;TAP2 binding;0.0479765261134905!GO:0046977;TAP binding;0.0479765261134905!GO:0046978;TAP1 binding;0.0479765261134905!GO:0004003;ATP-dependent DNA helicase activity;0.0482365726452178!GO:0030133;transport vesicle;0.0482680190604638!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0483441151976818!GO:0046854;phosphoinositide phosphorylation;0.0485922265990926!GO:0030833;regulation of actin filament polymerization;0.0490637754654831!GO:0007040;lysosome organization and biogenesis;0.0494042462402242!GO:0051059;NF-kappaB binding;0.0495042866904657!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0495042866904657!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0495679919900706
|sample_id=12204
|sample_id=12204
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=POU5F1:3.23867355094;POU2F1..3:3.06170220543;FOXA2:2.09631288504;ELF1,2,4:2.03039651747;PBX1:1.87372307149;DMAP1_NCOR{1,2}_SMARC:1.80806724204;FOX{F1,F2,J1}:1.66299424375;FOX{I1,J2}:1.65764101279;ELK1,4_GABP{A,B1}:1.57304932108;TLX2:1.50743612487;SPI1:1.50579581798;AIRE:1.47690763075;IRF1,2:1.45927244149;FOX{D1,D2}:1.39136629708;FOXO1,3,4:1.38409976525;SPIB:1.362699924;ETS1,2:1.32721895812;STAT1,3:1.29036367302;CRX:1.23564331894;PAX6:1.19008309601;RUNX1..3:1.18941849491;BPTF:1.14746280484;FOXN1:1.12638681216;ALX1:1.09421236636;NFKB1_REL_RELA:1.07736069286;RFX2..5_RFXANK_RFXAP:0.98574593762;NANOG{mouse}:0.967472021535;YY1:0.898802041684;VSX1,2:0.855324966672;HBP1_HMGB_SSRP1_UBTF:0.805966811795;LMO2:0.737501416948;OCT4_SOX2{dimer}:0.706393581527;IRF7:0.695113109476;ATF5_CREB3:0.653336265174;PDX1:0.652566160824;NKX2-2,8:0.622719062795;RORA:0.551233268651;ATF2:0.539049842704;GATA6:0.538289500855;CREB1:0.532616706301;ZEB1:0.528995568799;BREu{core}:0.49749805899;FOXP3:0.492509251655;MYOD1:0.486691701695;HMX1:0.480935489206;PAX3,7:0.462082488285;CDX1,2,4:0.455664504622;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450912215459;ESR1:0.449383017567;NKX2-1,4:0.447617441301;SNAI1..3:0.442205952915;EP300:0.427421723275;TGIF1:0.420360320413;ZNF143:0.389879112572;MEF2{A,B,C,D}:0.374092373386;SOX5:0.32931871311;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.321085479815;FOXP1:0.300726197777;MYB:0.29638508817;ATF4:0.29291680602;NRF1:0.280189416256;RXRA_VDR{dimer}:0.26837116087;HES1:0.254682391947;HIF1A:0.248386813331;SREBF1,2:0.243484488422;PAX2:0.194352751428;CUX2:0.183737231184;NKX6-1,2:0.179003222109;SOX{8,9,10}:0.154420990333;PRRX1,2:0.0972014957238;STAT5{A,B}:0.0723464504125;ZBTB16:0.0410931591402;NR5A1,2:0.0346085455487;NHLH1,2:0.0134775702161;NFY{A,B,C}:-0.0221641845369;T:-0.0731218430058;NFIX:-0.0917057787523;GLI1..3:-0.0927413499687;TEF:-0.107453961788;FOXQ1:-0.109048036927;AR:-0.143867243109;NFATC1..3:-0.144124204574;ADNP_IRX_SIX_ZHX:-0.149760150338;ATF6:-0.168883959372;ZFP161:-0.176649455254;ZNF148:-0.177063878288;LEF1_TCF7_TCF7L1,2:-0.189964412827;EVI1:-0.197552157964;HAND1,2:-0.201168695733;HOXA9_MEIS1:-0.207813323072;IKZF2:-0.24635277261;NFIL3:-0.256545029723;NANOG:-0.258032018514;GFI1:-0.265589832257;E2F1..5:-0.26583275324;HOX{A6,A7,B6,B7}:-0.276257956309;RBPJ:-0.280894856509;TAL1_TCF{3,4,12}:-0.282589507127;TFAP4:-0.305466114494;ALX4:-0.306373580377;HNF4A_NR2F1,2:-0.309044534414;DBP:-0.330855215049;TOPORS:-0.331560775987;SPZ1:-0.341190864786;ONECUT1,2:-0.34727078934;POU1F1:-0.383995196815;SRF:-0.448168590474;PPARG:-0.448792839208;HNF1A:-0.453790004464;PRDM1:-0.460248438382;CDC5L:-0.471400010728;bHLH_family:-0.476466999775;FOSL2:-0.481253442347;CEBPA,B_DDIT3:-0.504420689619;RFX1:-0.530413773559;AHR_ARNT_ARNT2:-0.540283382979;EBF1:-0.559143481505;NKX2-3_NKX2-5:-0.584537971039;SMAD1..7,9:-0.599546305946;FOS_FOS{B,L1}_JUN{B,D}:-0.603780724743;JUN:-0.607698784134;MYFfamily:-0.608471442978;EGR1..3:-0.60917592269;FOXL1:-0.610541221638;RXR{A,B,G}:-0.62586284865;SOX17:-0.627912346873;TFCP2:-0.643392513409;HOX{A4,D4}:-0.652536513015;XBP1:-0.693266323983;NKX3-2:-0.697178606294;POU6F1:-0.717594159941;HLF:-0.734526248351;ARID5B:-0.749769294112;BACH2:-0.75984698555;NFE2:-0.799301392098;HMGA1,2:-0.805026392699;NR6A1:-0.805364293167;NKX3-1:-0.813412110958;MAFB:-0.829167138234;ZNF238:-0.872914651752;XCPE1{core}:-0.883395259546;TBP:-0.907073228702;EN1,2:-0.909202550953;SOX2:-0.9161914932;REST:-0.91964497924;LHX3,4:-0.9470700003;NR1H4:-0.955221892672;HOX{A5,B5}:-0.966485322611;MTE{core}:-0.970142147049;PAX4:-0.994229630603;GFI1B:-0.999982928031;TBX4,5:-1.00769103095;NFE2L2:-1.02062943018;PATZ1:-1.02203929827;TP53:-1.04870887641;MZF1:-1.07489384854;STAT2,4,6:-1.0759094727;PITX1..3:-1.07636711447;MYBL2:-1.11579316459;MAZ:-1.12644432674;FOXD3:-1.1271996086;ZNF423:-1.12892916216;GATA4:-1.15617939485;RREB1:-1.17497605313;MED-1{core}:-1.22831740008;MTF1:-1.23036728248;NR3C1:-1.27346012753;ZNF384:-1.32031457808;SP1:-1.36405554185;HIC1:-1.38451185211;FOXM1:-1.41351398101;NFE2L1:-1.44609205823;UFEwm:-1.48391591565;TFAP2B:-1.49430703809;PAX8:-1.50272665871;ZBTB6:-1.51445581747;HSF1,2:-1.51975587028;TEAD1:-1.56755708202;GZF1:-1.5757804821;PAX5:-1.59519685005;TFAP2{A,C}:-1.60487253306;GTF2I:-1.60546821618;ESRRA:-1.64841756107;TFDP1:-1.71044605026;ZIC1..3:-1.71400980884;KLF4:-1.7471449261;GTF2A1,2:-1.78316865632;TLX1..3_NFIC{dimer}:-1.9867073936;GCM1,2:-2.10156910416;POU3F1..4:-2.28690164732;PAX1,9:-2.45987480637;IKZF1:-2.49124913853
|top_motifs=POU5F1:3.23867355094;POU2F1..3:3.06170220543;FOXA2:2.09631288504;ELF1,2,4:2.03039651747;PBX1:1.87372307149;DMAP1_NCOR{1,2}_SMARC:1.80806724204;FOX{F1,F2,J1}:1.66299424375;FOX{I1,J2}:1.65764101279;ELK1,4_GABP{A,B1}:1.57304932108;TLX2:1.50743612487;SPI1:1.50579581798;AIRE:1.47690763075;IRF1,2:1.45927244149;FOX{D1,D2}:1.39136629708;FOXO1,3,4:1.38409976525;SPIB:1.362699924;ETS1,2:1.32721895812;STAT1,3:1.29036367302;CRX:1.23564331894;PAX6:1.19008309601;RUNX1..3:1.18941849491;BPTF:1.14746280484;FOXN1:1.12638681216;ALX1:1.09421236636;NFKB1_REL_RELA:1.07736069286;RFX2..5_RFXANK_RFXAP:0.98574593762;NANOG{mouse}:0.967472021535;YY1:0.898802041684;VSX1,2:0.855324966672;HBP1_HMGB_SSRP1_UBTF:0.805966811795;LMO2:0.737501416948;OCT4_SOX2{dimer}:0.706393581527;IRF7:0.695113109476;ATF5_CREB3:0.653336265174;PDX1:0.652566160824;NKX2-2,8:0.622719062795;RORA:0.551233268651;ATF2:0.539049842704;GATA6:0.538289500855;CREB1:0.532616706301;ZEB1:0.528995568799;BREu{core}:0.49749805899;FOXP3:0.492509251655;MYOD1:0.486691701695;HMX1:0.480935489206;PAX3,7:0.462082488285;CDX1,2,4:0.455664504622;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450912215459;ESR1:0.449383017567;NKX2-1,4:0.447617441301;SNAI1..3:0.442205952915;EP300:0.427421723275;TGIF1:0.420360320413;ZNF143:0.389879112572;MEF2{A,B,C,D}:0.374092373386;SOX5:0.32931871311;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.321085479815;FOXP1:0.300726197777;MYB:0.29638508817;ATF4:0.29291680602;NRF1:0.280189416256;RXRA_VDR{dimer}:0.26837116087;HES1:0.254682391947;HIF1A:0.248386813331;SREBF1,2:0.243484488422;PAX2:0.194352751428;CUX2:0.183737231184;NKX6-1,2:0.179003222109;SOX{8,9,10}:0.154420990333;PRRX1,2:0.0972014957238;STAT5{A,B}:0.0723464504125;ZBTB16:0.0410931591402;NR5A1,2:0.0346085455487;NHLH1,2:0.0134775702161;NFY{A,B,C}:-0.0221641845369;T:-0.0731218430058;NFIX:-0.0917057787523;GLI1..3:-0.0927413499687;TEF:-0.107453961788;FOXQ1:-0.109048036927;AR:-0.143867243109;NFATC1..3:-0.144124204574;ADNP_IRX_SIX_ZHX:-0.149760150338;ATF6:-0.168883959372;ZFP161:-0.176649455254;ZNF148:-0.177063878288;LEF1_TCF7_TCF7L1,2:-0.189964412827;EVI1:-0.197552157964;HAND1,2:-0.201168695733;HOXA9_MEIS1:-0.207813323072;IKZF2:-0.24635277261;NFIL3:-0.256545029723;NANOG:-0.258032018514;GFI1:-0.265589832257;E2F1..5:-0.26583275324;HOX{A6,A7,B6,B7}:-0.276257956309;RBPJ:-0.280894856509;TAL1_TCF{3,4,12}:-0.282589507127;TFAP4:-0.305466114494;ALX4:-0.306373580377;HNF4A_NR2F1,2:-0.309044534414;DBP:-0.330855215049;TOPORS:-0.331560775987;SPZ1:-0.341190864786;ONECUT1,2:-0.34727078934;POU1F1:-0.383995196815;SRF:-0.448168590474;PPARG:-0.448792839208;HNF1A:-0.453790004464;PRDM1:-0.460248438382;CDC5L:-0.471400010728;bHLH_family:-0.476466999775;FOSL2:-0.481253442347;CEBPA,B_DDIT3:-0.504420689619;RFX1:-0.530413773559;AHR_ARNT_ARNT2:-0.540283382979;EBF1:-0.559143481505;NKX2-3_NKX2-5:-0.584537971039;SMAD1..7,9:-0.599546305946;FOS_FOS{B,L1}_JUN{B,D}:-0.603780724743;JUN:-0.607698784134;MYFfamily:-0.608471442978;EGR1..3:-0.60917592269;FOXL1:-0.610541221638;RXR{A,B,G}:-0.62586284865;SOX17:-0.627912346873;TFCP2:-0.643392513409;HOX{A4,D4}:-0.652536513015;XBP1:-0.693266323983;NKX3-2:-0.697178606294;POU6F1:-0.717594159941;HLF:-0.734526248351;ARID5B:-0.749769294112;BACH2:-0.75984698555;NFE2:-0.799301392098;HMGA1,2:-0.805026392699;NR6A1:-0.805364293167;NKX3-1:-0.813412110958;MAFB:-0.829167138234;ZNF238:-0.872914651752;XCPE1{core}:-0.883395259546;TBP:-0.907073228702;EN1,2:-0.909202550953;SOX2:-0.9161914932;REST:-0.91964497924;LHX3,4:-0.9470700003;NR1H4:-0.955221892672;HOX{A5,B5}:-0.966485322611;MTE{core}:-0.970142147049;PAX4:-0.994229630603;GFI1B:-0.999982928031;TBX4,5:-1.00769103095;NFE2L2:-1.02062943018;PATZ1:-1.02203929827;TP53:-1.04870887641;MZF1:-1.07489384854;STAT2,4,6:-1.0759094727;PITX1..3:-1.07636711447;MYBL2:-1.11579316459;MAZ:-1.12644432674;FOXD3:-1.1271996086;ZNF423:-1.12892916216;GATA4:-1.15617939485;RREB1:-1.17497605313;MED-1{core}:-1.22831740008;MTF1:-1.23036728248;NR3C1:-1.27346012753;ZNF384:-1.32031457808;SP1:-1.36405554185;HIC1:-1.38451185211;FOXM1:-1.41351398101;NFE2L1:-1.44609205823;UFEwm:-1.48391591565;TFAP2B:-1.49430703809;PAX8:-1.50272665871;ZBTB6:-1.51445581747;HSF1,2:-1.51975587028;TEAD1:-1.56755708202;GZF1:-1.5757804821;PAX5:-1.59519685005;TFAP2{A,C}:-1.60487253306;GTF2I:-1.60546821618;ESRRA:-1.64841756107;TFDP1:-1.71044605026;ZIC1..3:-1.71400980884;KLF4:-1.7471449261;GTF2A1,2:-1.78316865632;TLX1..3_NFIC{dimer}:-1.9867073936;GCM1,2:-2.10156910416;POU3F1..4:-2.28690164732;PAX1,9:-2.45987480637;IKZF1:-2.49124913853
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12204-129C8;search_select_hide=table117:FF:12204-129C8
}}
}}

Latest revision as of 18:34, 4 June 2020

Name:CD19+ B Cells (pluriselect), donor090612, donation1
Species:Human (Homo sapiens)
Library ID:CNhs12183,RDhi10010
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013688
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12183 CAGE DRX008055 DRR008927
RDhi10010 RNA-Seq DRX012344 DRR013792
Accession ID Hg19

Library idBAMCTSS
CNhs12183 DRZ000352 DRZ001737
RDhi10010 DRZ002993
Accession ID Hg38

Library idBAMCTSS
CNhs12183 DRZ011702 DRZ013087
RDhi10010
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0859
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.197
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.332
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.32
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.435
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.501
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.588
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.419
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.17
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.491
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.197
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0937
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.552
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.123
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.928
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.28
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.438
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.294
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.197
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.197
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix1.055
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.751
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12183

Jaspar motifP-value
MA0002.21.17423e-5
MA0003.10.645
MA0004.10.487
MA0006.10.437
MA0007.10.725
MA0009.10.691
MA0014.10.552
MA0017.10.119
MA0018.20.337
MA0019.10.896
MA0024.10.746
MA0025.10.898
MA0027.10.54
MA0028.11.9634e-6
MA0029.10.383
MA0030.10.0137
MA0031.10.0236
MA0035.20.279
MA0038.10.604
MA0039.20.404
MA0040.10.828
MA0041.10.187
MA0042.10.824
MA0043.10.367
MA0046.10.667
MA0047.20.336
MA0048.10.408
MA0050.11.16501e-11
MA0051.17.27103e-6
MA0052.10.133
MA0055.10.454
MA0057.10.729
MA0058.10.291
MA0059.10.387
MA0060.10.759
MA0061.11.07739e-5
MA0062.25.52484e-19
MA0065.20.0855
MA0066.10.585
MA0067.10.341
MA0068.10.366
MA0069.10.382
MA0070.10.462
MA0071.10.757
MA0072.10.633
MA0073.10.559
MA0074.10.727
MA0076.11.84616e-11
MA0077.10.29
MA0078.10.667
MA0079.20.574
MA0080.24.08716e-12
MA0081.12.09329e-4
MA0083.10.215
MA0084.10.39
MA0087.10.298
MA0088.10.0863
MA0090.16.51167e-5
MA0091.10.76
MA0092.10.72
MA0093.10.544
MA0099.21.73585e-4
MA0100.10.245
MA0101.10.00191
MA0102.20.288
MA0103.10.0119
MA0104.20.117
MA0105.12.20053e-7
MA0106.10.314
MA0107.10.00142
MA0108.23.96136e-7
MA0111.10.477
MA0112.20.0861
MA0113.10.94
MA0114.10.22
MA0115.10.379
MA0116.13.57123e-5
MA0117.10.594
MA0119.10.36
MA0122.10.183
MA0124.10.538
MA0125.10.741
MA0131.10.0464
MA0135.10.0566
MA0136.12.03528e-19
MA0137.20.445
MA0138.20.773
MA0139.10.265
MA0140.10.062
MA0141.10.888
MA0142.10.175
MA0143.10.895
MA0144.10.909
MA0145.10.783
MA0146.10.267
MA0147.10.142
MA0148.10.798
MA0149.10.18
MA0150.10.529
MA0152.10.281
MA0153.10.0103
MA0154.19.65775e-4
MA0155.10.677
MA0156.13.29066e-17
MA0157.10.0869
MA0159.10.0494
MA0160.10.429
MA0162.10.975
MA0163.17.99887e-9
MA0164.10.843
MA0258.10.213
MA0259.10.517



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12183

Novel motifP-value
10.151
100.0358
1000.521
1010.305
1020.887
1030.0766
1040.158
1050.405
1060.59
1070.261
1080.239
1090.111
110.127
1100.172
1110.167
1120.158
1130.0104
1140.435
1150.842
1160.618
1170.00104
1180.19
1190.848
120.808
1200.629
1210.412
1220.444
1230.093
1240.109
1250.139
1260.114
1270.644
1280.43
1290.759
130.514
1300.382
1310.488
1320.263
1330.00816
1340.584
1350.816
1360.507
1370.0475
1380.43
1390.0905
140.299
1400.484
1410.252
1420.509
1430.0673
1440.723
1450.297
1460.128
1470.0582
1480.663
1490.474
150.158
1500.556
1510.852
1520.575
1530.655
1540.857
1550.0168
1560.29
1570.162
1580.0954
1590.179
160.825
1600.532
1610.045
1620.556
1630.268
1640.499
1650.28
1660.539
1670.12
1680.203
1690.599
170.984
180.814
190.649
20.848
200.606
210.758
220.765
230.553
240.33
250.0264
260.261
270.246
280.303
290.111
30.0874
300.346
310.744
320.122
330.36
340.847
350.194
360.0371
370.119
380.396
390.451
40.704
400.177
410.145
420.139
430.201
440.57
450.926
460.237
470.0829
480.152
490.183
50.477
500.979
510.505
520.481
530.397
540.973
550.106
560.676
570.53
580.0202
590.352
60.863
600.519
610.0352
620.0312
630.766
640.36
650.862
660.79
670.402
680.237
690.585
70.126
700.228
710.0561
720.0566
730.527
740.469
750.0111
760.0368
770.535
780.27
790.223
80.848
800.013
810.262
820.14
830.866
840.286
850.819
860.132
870.0879
880.669
890.912
90.43
900.0148
910.718
920.562
930.772
940.08
950.0109
960.465
970.464
980.117
990.0182



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12183


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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