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{{f5samples
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013684
|accession_numbers=CAGE;DRX008071;DRR008943;DRZ000368;DRZ001753;DRZ011718;DRZ013103!RNA-Seq;DRX012352;DRR013800;DRZ003001;
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.98!94.43!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.94!85.40!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.92!81.29!EOMES;;chr1:25256756..25256774,-!p1@RUNX3!1.77!105.10!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.76!76.36!STAT4;;chr5:133451294..133451310,+!p2@TCF7!1.75!55.84!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.75!55.02!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.72!50.91!PLEK;;chr2:231090433..231090469,+!p1@SP140!1.69!47.63!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.76!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.64!114.14!AKNA;;chr17:37934365..37934387,-!p2@IKZF3!1.63!41.88!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.60!38.59!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.57!36.13!LEF1;;chr14:75988771..75988826,+!p1@BATF!1.55!45.98!BATF;;chr1:26697243..26697258,-!p1@ZNF683!1.53!32.85!ZNF683;;chr19:16435625..16435682,+!p1@KLF2!1.50!928.70!KLF2;;chr20:50159198..50159299,-!p1@NFATC2!1.49!43.52!NFATC2;;chr4:57522166..57522260,-!p2@HOPX!1.49!34.49!HOPX;;chr5:133450365..133450444,+!p1@TCF7!1.47!124.81!TCF7;;chr4:57522598..57522664,-!p3@HOPX!1.42!25.45!HOPX;;chr7:50344251..50344288,+!p3@IKZF1!1.39!23.81!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.38!22.99!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.37!62.41!ZNF101;;chr15:60884706..60884743,-!p1@RORA!1.35!108.39!RORA;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.35!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.32!19.71!TCF7;;chr20:56195474..56195506,-!p1@ZBP1!1.26!17.24!ZBP1;;chr6:106546808..106546833,+!p3@PRDM1!1.24!20.53!PRDM1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.53!SATB1;;chr11:128392273..128392308,-!p2@ETS1!1.22!64.87!ETS1;;chr2:231090471..231090504,+!p2@SP140!1.22!15.60!SP140;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.60!LEF1;;chr17:38020557..38020572,-!p4@IKZF3!1.22!15.60!IKZF3;;chr4:57522674..57522699,-!p5@HOPX!1.20!14.78!HOPX;;chr8:67525443..67525459,-!p2@MYBL1!1.19!21.35!MYBL1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.71!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.17!13.96!FOXP1;;chr17:37934280..37934299,-!p6@IKZF3!1.17!13.96!IKZF3;;chr17:38020516..38020544,-!p5@IKZF3!1.17!13.96!IKZF3;;chr11:128392085..128392232,-!p1@ETS1!1.16!449.98!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.14!80.47!ELF1;;chr17:38020392..38020477,-!p1@IKZF3!1.12!12.32!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.12!12.32!IKZF1;;chr1:26697189..26697205,-!p2@ZNF683!1.12!12.32!ZNF683;;chr11:128563948..128564003,+!p1@FLI1!1.10!140.41!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.10!25.45!ZBTB25;;chr6:106546731..106546755,+!p5@PRDM1!1.10!11.50!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.50!CREB3L2;;chr3:71542684..71542720,-!p18@FOXP1!1.10!11.50!FOXP1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr14:75988831..75988847,+!p2@BATF!1.07!10.67!BATF;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.32!GATA3;;chrX:106960285..106960299,-!p1@TSC22D3!1.05!277.54!TSC22D3;;chr4:81104895..81104920,+!p2@PRDM8!1.05!15.60!PRDM8;;chr13:74707894..74707947,-!p6@KLF12!1.05!11.50!KLF12;;chr2:97202991..97203043,+!p3@ARID5A!1.04!9.85!ARID5A;;chr4:109089901..109089930,-!p3@LEF1!1.04!9.85!LEF1;;chr6:391743..391759,+!p1@IRF4!1.04!9.85!IRF4;;chr6:106546786..106546802,+!p6@PRDM1!1.00!9.03!PRDM1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.03!IKZF1;;chr20:52226313..52226350,-!p3@ZNF217!1.00!9.03!ZNF217;;chr16:89789271..89789291,+!p5@ZNF276!1.00!9.03!ZNF276;;chr9:3525727..3525828,-!p2@RFX3!0.99!22.99!RFX3;;chr8:60031619..60031676,-!p1@TOX!0.98!18.89!TOX;;chr8:67525473..67525518,-!p1@MYBL1!0.97!19.71!MYBL1;;chr20:44600199..44600219,-!p3@ZNF335!0.97!11.50!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.97!10.67!AKNA;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.85!SNAI3;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.41!FOXP1;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.32!ZNF540;;chr1:92951607..92951661,-!p1@GFI1!0.96!8.21!GFI1;;chr3:18487057..18487105,-!p4@SATB1!0.96!8.21!SATB1;;chr11:47400078..47400106,-!p1@SPI1!0.96!8.21!SPI1;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.06!BACH2;;chr19:53289995..53290050,-!p1@ZNF600!0.93!32.02!ZNF600;;chr17:36861675..36861697,+!p3@MLLT6!0.93!18.06!MLLT6;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.63!ZMAT1;;chr4:109088940..109089037,-!p4@LEF1!0.92!7.39!LEF1;;chr13:74708029..74708077,-!p2@KLF12!0.91!21.35!KLF12;;chr17:36861735..36861755,+!p4@MLLT6!0.91!12.32!MLLT6;;chr6:45296048..45296082,+!p1@RUNX2!0.91!8.21!RUNX2;;chr16:68119324..68119364,+!p1@NFATC3!0.89!32.02!NFATC3;;chr21:36421535..36421610,-!p2@RUNX1!0.89!25.45!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.89!8.21!GATA3;;chr19:19729477..19729542,-!p1@PBX4!0.88!14.78!PBX4;;chr17:38020607..38020621,-!p9@IKZF3!0.88!6.57!IKZF3;;chr21:36421347..36421380,-!p8@RUNX1!0.88!6.57!RUNX1;;chr3:18480217..18480239,-!p3@SATB1!0.88!6.57!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.88!6.57!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!0.88!6.57!LEF1;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.57!NR3C2;;chr16:89787937..89787971,+!p1@ZNF276!0.87!17.24!ZNF276;;chr16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|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.98!94.43!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.94!85.40!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.92!81.29!EOMES;;chr1:25256756..25256774,-!p1@RUNX3!1.77!105.10!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.76!76.36!STAT4;;chr5:133451294..133451310,+!p2@TCF7!1.75!55.84!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.75!55.02!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.72!50.91!PLEK;;chr2:231090433..231090469,+!p1@SP140!1.69!47.63!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.76!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.64!114.14!AKNA;;chr17:37934365..37934387,-!p2@IKZF3!1.63!41.88!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.60!38.59!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.57!36.13!LEF1;;chr14:75988771..75988826,+!p1@BATF!1.55!45.98!BATF;;chr1:26697243..26697258,-!p1@ZNF683!1.53!32.85!ZNF683;;chr19:16435625..16435682,+!p1@KLF2!1.50!928.70!KLF2;;chr20:50159198..50159299,-!p1@NFATC2!1.49!43.52!NFATC2;;chr4:57522166..57522260,-!p2@HOPX!1.49!34.49!HOPX;;chr5:133450365..133450444,+!p1@TCF7!1.47!124.81!TCF7;;chr4:57522598..57522664,-!p3@HOPX!1.42!25.45!HOPX;;chr7:50344251..50344288,+!p3@IKZF1!1.39!23.81!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.38!22.99!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.37!62.41!ZNF101;;chr15:60884706..60884743,-!p1@RORA!1.35!108.39!RORA;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.35!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.32!19.71!TCF7;;chr20:56195474..56195506,-!p1@ZBP1!1.26!17.24!ZBP1;;chr6:106546808..106546833,+!p3@PRDM1!1.24!20.53!PRDM1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.53!SATB1;;chr11:128392273..128392308,-!p2@ETS1!1.22!64.87!ETS1;;chr2:231090471..231090504,+!p2@SP140!1.22!15.60!SP140;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.60!LEF1;;chr17:38020557..38020572,-!p4@IKZF3!1.22!15.60!IKZF3;;chr4:57522674..57522699,-!p5@HOPX!1.20!14.78!HOPX;;chr8:67525443..67525459,-!p2@MYBL1!1.19!21.35!MYBL1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.71!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.17!13.96!FOXP1;;chr17:37934280..37934299,-!p6@IKZF3!1.17!13.96!IKZF3;;chr17:38020516..38020544,-!p5@IKZF3!1.17!13.96!IKZF3;;chr11:128392085..128392232,-!p1@ETS1!1.16!449.98!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.14!80.47!ELF1;;chr17:38020392..38020477,-!p1@IKZF3!1.12!12.32!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.12!12.32!IKZF1;;chr1:26697189..26697205,-!p2@ZNF683!1.12!12.32!ZNF683;;chr11:128563948..128564003,+!p1@FLI1!1.10!140.41!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.10!25.45!ZBTB25;;chr6:106546731..106546755,+!p5@PRDM1!1.10!11.50!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.50!CREB3L2;;chr3:71542684..71542720,-!p18@FOXP1!1.10!11.50!FOXP1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr14:75988831..75988847,+!p2@BATF!1.07!10.67!BATF;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.32!GATA3;;chrX:106960285..106960299,-!p1@TSC22D3!1.05!277.54!TSC22D3;;chr4:81104895..81104920,+!p2@PRDM8!1.05!15.60!PRDM8;;chr13:74707894..74707947,-!p6@KLF12!1.05!11.50!KLF12;;chr2:97202991..97203043,+!p3@ARID5A!1.04!9.85!ARID5A;;chr4:109089901..109089930,-!p3@LEF1!1.04!9.85!LEF1;;chr6:391743..391759,+!p1@IRF4!1.04!9.85!IRF4;;chr6:106546786..106546802,+!p6@PRDM1!1.00!9.03!PRDM1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.03!IKZF1;;chr20:52226313..52226350,-!p3@ZNF217!1.00!9.03!ZNF217;;chr16:89789271..89789291,+!p5@ZNF276!1.00!9.03!ZNF276;;chr9:3525727..3525828,-!p2@RFX3!0.99!22.99!RFX3;;chr8:60031619..60031676,-!p1@TOX!0.98!18.89!TOX;;chr8:67525473..67525518,-!p1@MYBL1!0.97!19.71!MYBL1;;chr20:44600199..44600219,-!p3@ZNF335!0.97!11.50!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.97!10.67!AKNA;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.85!SNAI3;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.41!FOXP1;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.32!ZNF540;;chr1:92951607..92951661,-!p1@GFI1!0.96!8.21!GFI1;;chr3:18487057..18487105,-!p4@SATB1!0.96!8.21!SATB1;;chr11:47400078..47400106,-!p1@SPI1!0.96!8.21!SPI1;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.06!BACH2;;chr19:53289995..53290050,-!p1@ZNF600!0.93!32.02!ZNF600;;chr17:36861675..36861697,+!p3@MLLT6!0.93!18.06!MLLT6;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.63!ZMAT1;;chr4:109088940..109089037,-!p4@LEF1!0.92!7.39!LEF1;;chr13:74708029..74708077,-!p2@KLF12!0.91!21.35!KLF12;;chr17:36861735..36861755,+!p4@MLLT6!0.91!12.32!MLLT6;;chr6:45296048..45296082,+!p1@RUNX2!0.91!8.21!RUNX2;;chr16:68119324..68119364,+!p1@NFATC3!0.89!32.02!NFATC3;;chr21:36421535..36421610,-!p2@RUNX1!0.89!25.45!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.89!8.21!GATA3;;chr19:19729477..19729542,-!p1@PBX4!0.88!14.78!PBX4;;chr17:38020607..38020621,-!p9@IKZF3!0.88!6.57!IKZF3;;chr21:36421347..36421380,-!p8@RUNX1!0.88!6.57!RUNX1;;chr3:18480217..18480239,-!p3@SATB1!0.88!6.57!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.88!6.57!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!0.88!6.57!LEF1;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.57!NR3C2;;chr16:89787937..89787971,+!p1@ZNF276!0.87!17.24!ZNF276;;chr16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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg38.nobarcode.ctss.bed.gz
|id=FF:12211-129D6
|id=FF:12211-129D6
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12187!RDhi10019
|library_id_phase_based=2:CNhs12187
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12211
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12211
|name=CD8+ T Cells (pluriselect), donor090612, donation3
|name=CD8+ T Cells (pluriselect), donor090612, donation3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12187,LSID975,release011,COMPLETED
|profile_hcage=CNhs12187,LSID975,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|sample_cell_line=
Line 83: Line 101:
|top_motifs=T:2.69982958591;RUNX1..3:2.21910535594;ELF1,2,4:2.16218329194;TLX2:2.01182537353;ETS1,2:1.87797198605;FOX{F1,F2,J1}:1.852788427;PAX3,7:1.78825856097;RORA:1.75633817765;CDX1,2,4:1.67557423532;PDX1:1.62836504828;FOXO1,3,4:1.6119441119;FOX{D1,D2}:1.56255123478;DMAP1_NCOR{1,2}_SMARC:1.43528642454;SPI1:1.37109113285;IRF1,2:1.33982398138;ELK1,4_GABP{A,B1}:1.33961828066;LEF1_TCF7_TCF7L1,2:1.32276940526;FOX{I1,J2}:1.22207584497;STAT1,3:1.19763306463;GATA6:1.18641869294;SPIB:1.10752069576;IKZF2:1.10095181989;PAX6:1.08159029183;HMX1:1.07623138664;SPZ1:1.04668756134;PBX1:0.908771191287;NANOG{mouse}:0.890332798059;NR1H4:0.785713102247;RFX2..5_RFXANK_RFXAP:0.77989726741;FOXA2:0.77978773631;IRF7:0.774390375817;VSX1,2:0.731441583064;TGIF1:0.726466145896;CRX:0.705224039195;NKX2-2,8:0.69159968851;MYOD1:0.686086457951;YY1:0.642218776359;NKX6-1,2:0.626785024107;BPTF:0.617485196348;CREB1:0.610740399345;BREu{core}:0.610678630594;NFIX:0.545418228583;PAX4:0.544785682623;ZBTB16:0.50020401143;ZEB1:0.443131205932;ATF5_CREB3:0.436770648566;ALX1:0.419275054938;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.410319918836;SOX5:0.385791177471;HES1:0.378811846541;ZNF148:0.290080715525;PRRX1,2:0.270639650694;SNAI1..3:0.24744866952;HOX{A6,A7,B6,B7}:0.231227206076;FOXN1:0.2183224324;NFKB1_REL_RELA:0.203943427397;RBPJ:0.192011560951;CUX2:0.187029897555;LMO2:0.177033452422;SOX2:0.173424876594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.172352383323;AR:0.140149743614;NKX3-1:0.13343291499;ATF2:0.131230643187;NFATC1..3:0.124791985956;NKX2-1,4:0.123286098052;NRF1:0.0972143966439;OCT4_SOX2{dimer}:0.0755590448412;FOXP3:0.0754969926062;SREBF1,2:0.0656615152793;ADNP_IRX_SIX_ZHX:0.0605937019557;PAX2:0.0483619740513;RXRA_VDR{dimer}:0.0424570447587;MYB:0.0334352634693;TAL1_TCF{3,4,12}:0.0175676932803;EP300:0.00774600789263;NFIL3:-0.0400136317314;NR5A1,2:-0.0540133710409;ZNF143:-0.0579575162734;POU2F1..3:-0.0876946846145;HAND1,2:-0.102235150608;AHR_ARNT_ARNT2:-0.109208594753;HBP1_HMGB_SSRP1_UBTF:-0.136107747617;FOXP1:-0.178398317298;HNF4A_NR2F1,2:-0.19957759286;GFI1:-0.223617334368;FOXD3:-0.232370635071;HMGA1,2:-0.24220037865;HNF1A:-0.251314599934;NFE2L2:-0.282230792221;FOSL2:-0.285511789635;E2F1..5:-0.289022395112;JUN:-0.292296569291;STAT5{A,B}:-0.297291744865;MAFB:-0.313423298943;POU1F1:-0.320270426666;STAT2,4,6:-0.321921112887;ATF6:-0.332927560801;FOXQ1:-0.337968923634;NFY{A,B,C}:-0.339617237282;ALX4:-0.354084338325;TFCP2:-0.377651991204;CEBPA,B_DDIT3:-0.378613488107;GCM1,2:-0.379827507859;MYFfamily:-0.384439467853;NANOG:-0.390018259381;ZNF384:-0.399497999019;BACH2:-0.415007941132;TFAP4:-0.417709818723;FOXM1:-0.432151535394;NKX2-3_NKX2-5:-0.443112400054;ATF4:-0.464218248734;POU5F1:-0.47764950496;HLF:-0.4820915816;ZBTB6:-0.483020522866;MTF1:-0.483923287708;FOS_FOS{B,L1}_JUN{B,D}:-0.492094837106;RFX1:-0.505896500504;NHLH1,2:-0.542743555576;PAX5:-0.545473998734;MEF2{A,B,C,D}:-0.569455101632;NFE2L1:-0.569653973324;ZNF238:-0.584884619864;LHX3,4:-0.62936595381;SMAD1..7,9:-0.630181216327;NFE2:-0.633188348306;TBX4,5:-0.643537069756;RREB1:-0.647546655131;REST:-0.658673402146;ARID5B:-0.673204535371;CDC5L:-0.687128757562;ZFP161:-0.70413725896;ESR1:-0.72518588147;HOX{A4,D4}:-0.728566433587;HOXA9_MEIS1:-0.730675794653;GLI1..3:-0.732260381755;PITX1..3:-0.737570577284;SRF:-0.750243424738;EGR1..3:-0.760940136274;EVI1:-0.765596918341;AIRE:-0.776316611731;HIF1A:-0.780243586119;ONECUT1,2:-0.859972678759;TP53:-0.862409744804;MAZ:-0.866113040591;PAX8:-0.879317218381;FOXL1:-0.884529129985;MED-1{core}:-0.88809710699;MZF1:-0.892608728436;NR3C1:-0.90430541367;ZNF423:-0.931609894543;PRDM1:-0.948837406727;PPARG:-0.950820289519;DBP:-0.960358297842;HOX{A5,B5}:-1.00937674764;EN1,2:-1.03203212919;NR6A1:-1.04279594579;MTE{core}:-1.06064684366;TFDP1:-1.06299143133;GZF1:-1.07115227695;SOX{8,9,10}:-1.0742601185;GATA4:-1.10246114344;bHLH_family:-1.10592469287;SOX17:-1.14192548443;GTF2I:-1.15054776972;TFAP2B:-1.17241489937;HSF1,2:-1.18270858012;GFI1B:-1.19338304677;KLF4:-1.22063279881;TEF:-1.23757180381;TLX1..3_NFIC{dimer}:-1.24430224894;XCPE1{core}:-1.26043930057;PATZ1:-1.27342759489;TOPORS:-1.27603592751;MYBL2:-1.28356053234;HIC1:-1.29730963345;UFEwm:-1.30274268269;TBP:-1.37317365902;ESRRA:-1.37421541154;ZIC1..3:-1.37900655969;EBF1:-1.39903369455;XBP1:-1.442384505;POU6F1:-1.50947006899;NKX3-2:-1.52588062581;TEAD1:-1.61595472642;RXR{A,B,G}:-1.7462693793;TFAP2{A,C}:-1.83362242185;SP1:-1.86084051086;GTF2A1,2:-1.89683125486;POU3F1..4:-1.91980132911;PAX1,9:-2.23711739271;IKZF1:-2.31578723594
|top_motifs=T:2.69982958591;RUNX1..3:2.21910535594;ELF1,2,4:2.16218329194;TLX2:2.01182537353;ETS1,2:1.87797198605;FOX{F1,F2,J1}:1.852788427;PAX3,7:1.78825856097;RORA:1.75633817765;CDX1,2,4:1.67557423532;PDX1:1.62836504828;FOXO1,3,4:1.6119441119;FOX{D1,D2}:1.56255123478;DMAP1_NCOR{1,2}_SMARC:1.43528642454;SPI1:1.37109113285;IRF1,2:1.33982398138;ELK1,4_GABP{A,B1}:1.33961828066;LEF1_TCF7_TCF7L1,2:1.32276940526;FOX{I1,J2}:1.22207584497;STAT1,3:1.19763306463;GATA6:1.18641869294;SPIB:1.10752069576;IKZF2:1.10095181989;PAX6:1.08159029183;HMX1:1.07623138664;SPZ1:1.04668756134;PBX1:0.908771191287;NANOG{mouse}:0.890332798059;NR1H4:0.785713102247;RFX2..5_RFXANK_RFXAP:0.77989726741;FOXA2:0.77978773631;IRF7:0.774390375817;VSX1,2:0.731441583064;TGIF1:0.726466145896;CRX:0.705224039195;NKX2-2,8:0.69159968851;MYOD1:0.686086457951;YY1:0.642218776359;NKX6-1,2:0.626785024107;BPTF:0.617485196348;CREB1:0.610740399345;BREu{core}:0.610678630594;NFIX:0.545418228583;PAX4:0.544785682623;ZBTB16:0.50020401143;ZEB1:0.443131205932;ATF5_CREB3:0.436770648566;ALX1:0.419275054938;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.410319918836;SOX5:0.385791177471;HES1:0.378811846541;ZNF148:0.290080715525;PRRX1,2:0.270639650694;SNAI1..3:0.24744866952;HOX{A6,A7,B6,B7}:0.231227206076;FOXN1:0.2183224324;NFKB1_REL_RELA:0.203943427397;RBPJ:0.192011560951;CUX2:0.187029897555;LMO2:0.177033452422;SOX2:0.173424876594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.172352383323;AR:0.140149743614;NKX3-1:0.13343291499;ATF2:0.131230643187;NFATC1..3:0.124791985956;NKX2-1,4:0.123286098052;NRF1:0.0972143966439;OCT4_SOX2{dimer}:0.0755590448412;FOXP3:0.0754969926062;SREBF1,2:0.0656615152793;ADNP_IRX_SIX_ZHX:0.0605937019557;PAX2:0.0483619740513;RXRA_VDR{dimer}:0.0424570447587;MYB:0.0334352634693;TAL1_TCF{3,4,12}:0.0175676932803;EP300:0.00774600789263;NFIL3:-0.0400136317314;NR5A1,2:-0.0540133710409;ZNF143:-0.0579575162734;POU2F1..3:-0.0876946846145;HAND1,2:-0.102235150608;AHR_ARNT_ARNT2:-0.109208594753;HBP1_HMGB_SSRP1_UBTF:-0.136107747617;FOXP1:-0.178398317298;HNF4A_NR2F1,2:-0.19957759286;GFI1:-0.223617334368;FOXD3:-0.232370635071;HMGA1,2:-0.24220037865;HNF1A:-0.251314599934;NFE2L2:-0.282230792221;FOSL2:-0.285511789635;E2F1..5:-0.289022395112;JUN:-0.292296569291;STAT5{A,B}:-0.297291744865;MAFB:-0.313423298943;POU1F1:-0.320270426666;STAT2,4,6:-0.321921112887;ATF6:-0.332927560801;FOXQ1:-0.337968923634;NFY{A,B,C}:-0.339617237282;ALX4:-0.354084338325;TFCP2:-0.377651991204;CEBPA,B_DDIT3:-0.378613488107;GCM1,2:-0.379827507859;MYFfamily:-0.384439467853;NANOG:-0.390018259381;ZNF384:-0.399497999019;BACH2:-0.415007941132;TFAP4:-0.417709818723;FOXM1:-0.432151535394;NKX2-3_NKX2-5:-0.443112400054;ATF4:-0.464218248734;POU5F1:-0.47764950496;HLF:-0.4820915816;ZBTB6:-0.483020522866;MTF1:-0.483923287708;FOS_FOS{B,L1}_JUN{B,D}:-0.492094837106;RFX1:-0.505896500504;NHLH1,2:-0.542743555576;PAX5:-0.545473998734;MEF2{A,B,C,D}:-0.569455101632;NFE2L1:-0.569653973324;ZNF238:-0.584884619864;LHX3,4:-0.62936595381;SMAD1..7,9:-0.630181216327;NFE2:-0.633188348306;TBX4,5:-0.643537069756;RREB1:-0.647546655131;REST:-0.658673402146;ARID5B:-0.673204535371;CDC5L:-0.687128757562;ZFP161:-0.70413725896;ESR1:-0.72518588147;HOX{A4,D4}:-0.728566433587;HOXA9_MEIS1:-0.730675794653;GLI1..3:-0.732260381755;PITX1..3:-0.737570577284;SRF:-0.750243424738;EGR1..3:-0.760940136274;EVI1:-0.765596918341;AIRE:-0.776316611731;HIF1A:-0.780243586119;ONECUT1,2:-0.859972678759;TP53:-0.862409744804;MAZ:-0.866113040591;PAX8:-0.879317218381;FOXL1:-0.884529129985;MED-1{core}:-0.88809710699;MZF1:-0.892608728436;NR3C1:-0.90430541367;ZNF423:-0.931609894543;PRDM1:-0.948837406727;PPARG:-0.950820289519;DBP:-0.960358297842;HOX{A5,B5}:-1.00937674764;EN1,2:-1.03203212919;NR6A1:-1.04279594579;MTE{core}:-1.06064684366;TFDP1:-1.06299143133;GZF1:-1.07115227695;SOX{8,9,10}:-1.0742601185;GATA4:-1.10246114344;bHLH_family:-1.10592469287;SOX17:-1.14192548443;GTF2I:-1.15054776972;TFAP2B:-1.17241489937;HSF1,2:-1.18270858012;GFI1B:-1.19338304677;KLF4:-1.22063279881;TEF:-1.23757180381;TLX1..3_NFIC{dimer}:-1.24430224894;XCPE1{core}:-1.26043930057;PATZ1:-1.27342759489;TOPORS:-1.27603592751;MYBL2:-1.28356053234;HIC1:-1.29730963345;UFEwm:-1.30274268269;TBP:-1.37317365902;ESRRA:-1.37421541154;ZIC1..3:-1.37900655969;EBF1:-1.39903369455;XBP1:-1.442384505;POU6F1:-1.50947006899;NKX3-2:-1.52588062581;TEAD1:-1.61595472642;RXR{A,B,G}:-1.7462693793;TFAP2{A,C}:-1.83362242185;SP1:-1.86084051086;GTF2A1,2:-1.89683125486;POU3F1..4:-1.91980132911;PAX1,9:-2.23711739271;IKZF1:-2.31578723594
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12211-129D6;search_select_hide=table117:FF:12211-129D6
}}
}}

Latest revision as of 18:34, 4 June 2020

Name:CD8+ T Cells (pluriselect), donor090612, donation3
Species:Human (Homo sapiens)
Library ID:CNhs12187,RDhi10019
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeT cell, CD8+
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013684
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12187 CAGE DRX008071 DRR008943
RDhi10019 RNA-Seq DRX012352 DRR013800
Accession ID Hg19

Library idBAMCTSS
CNhs12187 DRZ000368 DRZ001753
RDhi10019 DRZ003001
Accession ID Hg38

Library idBAMCTSS
CNhs12187 DRZ011718 DRZ013103
RDhi10019
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.14
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.233
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.422
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.313
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.773
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.644
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.338
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.26
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.422
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0667
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.545
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.422
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.17
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.54
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.26
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.579
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.273
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.26
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0784
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.26
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.883
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.924
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12187

Jaspar motifP-value
MA0002.28.27544e-10
MA0003.10.776
MA0004.10.894
MA0006.10.406
MA0007.10.679
MA0009.10.356
MA0014.10.901
MA0017.10.0177
MA0018.20.669
MA0019.10.483
MA0024.10.149
MA0025.10.453
MA0027.10.695
MA0028.11.69268e-4
MA0029.10.708
MA0030.10.11
MA0031.10.00923
MA0035.20.0694
MA0038.10.0742
MA0039.20.789
MA0040.10.687
MA0041.10.44
MA0042.10.47
MA0043.10.14
MA0046.10.783
MA0047.20.0873
MA0048.10.444
MA0050.14.25609e-8
MA0051.12.44114e-4
MA0052.10.0275
MA0055.10.452
MA0057.10.755
MA0058.10.691
MA0059.10.268
MA0060.10.125
MA0061.10.00774
MA0062.27.15354e-17
MA0065.20.0197
MA0066.10.118
MA0067.10.889
MA0068.10.966
MA0069.10.893
MA0070.10.519
MA0071.10.494
MA0072.10.441
MA0073.10.834
MA0074.10.986
MA0076.11.90175e-7
MA0077.10.116
MA0078.10.639
MA0079.20.33
MA0080.22.93449e-13
MA0081.10.00639
MA0083.10.0658
MA0084.10.647
MA0087.10.882
MA0088.10.0555
MA0090.16.8192e-4
MA0091.10.718
MA0092.10.828
MA0093.10.973
MA0099.20.216
MA0100.10.524
MA0101.10.757
MA0102.20.779
MA0103.10.127
MA0104.20.195
MA0105.18.85378e-6
MA0106.10.179
MA0107.10.895
MA0108.21.85631e-9
MA0111.10.176
MA0112.20.132
MA0113.10.543
MA0114.10.114
MA0115.10.909
MA0116.12.82452e-5
MA0117.10.725
MA0119.10.837
MA0122.10.132
MA0124.10.617
MA0125.10.778
MA0131.10.517
MA0135.10.843
MA0136.13.38042e-24
MA0137.20.11
MA0138.20.937
MA0139.10.00886
MA0140.10.0651
MA0141.10.74
MA0142.10.638
MA0143.10.58
MA0144.10.281
MA0145.10.972
MA0146.10.427
MA0147.10.182
MA0148.10.122
MA0149.10.0946
MA0150.10.66
MA0152.10.0936
MA0153.10.596
MA0154.10.00677
MA0155.10.705
MA0156.13.45293e-22
MA0157.10.0111
MA0159.10.105
MA0160.10.341
MA0162.10.882
MA0163.11.2789e-11
MA0164.10.518
MA0258.10.199
MA0259.10.481



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12187

Novel motifP-value
10.239
100.0174
1000.9
1010.251
1020.514
1030.157
1040.435
1050.18
1060.643
1070.231
1080.676
1090.0478
110.0574
1100.519
1110.286
1120.373
1130.275
1140.187
1150.127
1160.745
1170.00463
1180.298
1190.807
120.688
1200.499
1210.781
1220.253
1230.111
1240.0597
1250.853
1260.258
1270.406
1280.782
1290.243
130.601
1300.593
1310.725
1320.747
1330.983
1340.881
1350.253
1360.775
1370.0599
1380.343
1390.0069
140.256
1400.0363
1410.988
1420.932
1432.42916e-5
1440.702
1450.426
1460.145
1470.0414
1480.228
1490.644
150.0508
1500.754
1510.348
1520.42
1530.73
1540.973
1550.0411
1560.446
1570.645
1580.142
1590.125
160.702
1600.778
1610.376
1620.265
1630.834
1640.398
1650.301
1660.621
1670.284
1680.0885
1690.782
170.626
180.439
190.57
20.594
200.855
210.44
220.856
230.851
240.55
250.0748
260.425
270.0231
280.323
290.0391
30.054
300.643
310.529
320.312
330.507
340.682
350.0526
360.0213
370.164
380.542
390.627
40.638
400.488
410.116
420.0591
430.202
440.582
450.998
460.0918
470.0631
480.132
490.113
50.152
500.58
510.525
520.439
530.222
540.422
550.319
560.54
570.623
580.0467
590.339
60.891
600.282
610.0857
620.022
630.698
640.176
650.585
660.709
670.838
680.786
690.807
70.164
700.0123
710.0764
720.0305
730.651
740.392
750.0247
760.378
770.615
780.122
790.333
80.772
808.81702e-4
810.338
820.0955
830.667
840.556
850.714
860.151
870.626
880.823
890.783
90.403
900.0779
910.881
920.239
930.155
940.0696
950.0217
960.0816
970.44
980.271
990.102



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12187


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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