FF:12211-129D6: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090612, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs12187,RDhi10019
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013684

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12187		CAGE		DRX008071		DRR008943
RDhi10019		RNA-Seq		DRX012352		DRR013800

Accession ID Hg19

Library id		BAM		CTSS
CNhs12187		DRZ000368		DRZ001753
RDhi10019		DRZ003001

Accession ID Hg38

Library id		BAM		CTSS
CNhs12187		DRZ011718		DRZ013103
RDhi10019

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.14
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.233
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.422
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.313
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.773
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.644
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.338
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.26
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.422
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0667
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.545
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.422
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.17
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.54
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.26
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.579
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.273
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.26
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0784
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.26
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.883
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.924
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12187

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.27544e-10
MA0003.1	MA0003.1	0.776
MA0004.1	MA0004.1	0.894
MA0006.1	MA0006.1	0.406
MA0007.1	MA0007.1	0.679
MA0009.1	MA0009.1	0.356
MA0014.1	MA0014.1	0.901
MA0017.1	MA0017.1	0.0177
MA0018.2	MA0018.2	0.669
MA0019.1	MA0019.1	0.483
MA0024.1	MA0024.1	0.149
MA0025.1	MA0025.1	0.453
MA0027.1	MA0027.1	0.695
MA0028.1	MA0028.1	1.69268e-4
MA0029.1	MA0029.1	0.708
MA0030.1	MA0030.1	0.11
MA0031.1	MA0031.1	0.00923
MA0035.2	MA0035.2	0.0694
MA0038.1	MA0038.1	0.0742
MA0039.2	MA0039.2	0.789
MA0040.1	MA0040.1	0.687
MA0041.1	MA0041.1	0.44
MA0042.1	MA0042.1	0.47
MA0043.1	MA0043.1	0.14
MA0046.1	MA0046.1	0.783
MA0047.2	MA0047.2	0.0873
MA0048.1	MA0048.1	0.444
MA0050.1	MA0050.1	4.25609e-8
MA0051.1	MA0051.1	2.44114e-4
MA0052.1	MA0052.1	0.0275
MA0055.1	MA0055.1	0.452
MA0057.1	MA0057.1	0.755
MA0058.1	MA0058.1	0.691
MA0059.1	MA0059.1	0.268
MA0060.1	MA0060.1	0.125
MA0061.1	MA0061.1	0.00774
MA0062.2	MA0062.2	7.15354e-17
MA0065.2	MA0065.2	0.0197
MA0066.1	MA0066.1	0.118
MA0067.1	MA0067.1	0.889
MA0068.1	MA0068.1	0.966
MA0069.1	MA0069.1	0.893
MA0070.1	MA0070.1	0.519
MA0071.1	MA0071.1	0.494
MA0072.1	MA0072.1	0.441
MA0073.1	MA0073.1	0.834
MA0074.1	MA0074.1	0.986
MA0076.1	MA0076.1	1.90175e-7
MA0077.1	MA0077.1	0.116
MA0078.1	MA0078.1	0.639
MA0079.2	MA0079.2	0.33
MA0080.2	MA0080.2	2.93449e-13
MA0081.1	MA0081.1	0.00639
MA0083.1	MA0083.1	0.0658
MA0084.1	MA0084.1	0.647
MA0087.1	MA0087.1	0.882
MA0088.1	MA0088.1	0.0555
MA0090.1	MA0090.1	6.8192e-4
MA0091.1	MA0091.1	0.718
MA0092.1	MA0092.1	0.828
MA0093.1	MA0093.1	0.973
MA0099.2	MA0099.2	0.216
MA0100.1	MA0100.1	0.524
MA0101.1	MA0101.1	0.757
MA0102.2	MA0102.2	0.779
MA0103.1	MA0103.1	0.127
MA0104.2	MA0104.2	0.195
MA0105.1	MA0105.1	8.85378e-6
MA0106.1	MA0106.1	0.179
MA0107.1	MA0107.1	0.895
MA0108.2	MA0108.2	1.85631e-9
MA0111.1	MA0111.1	0.176
MA0112.2	MA0112.2	0.132
MA0113.1	MA0113.1	0.543
MA0114.1	MA0114.1	0.114
MA0115.1	MA0115.1	0.909
MA0116.1	MA0116.1	2.82452e-5
MA0117.1	MA0117.1	0.725
MA0119.1	MA0119.1	0.837
MA0122.1	MA0122.1	0.132
MA0124.1	MA0124.1	0.617
MA0125.1	MA0125.1	0.778
MA0131.1	MA0131.1	0.517
MA0135.1	MA0135.1	0.843
MA0136.1	MA0136.1	3.38042e-24
MA0137.2	MA0137.2	0.11
MA0138.2	MA0138.2	0.937
MA0139.1	MA0139.1	0.00886
MA0140.1	MA0140.1	0.0651
MA0141.1	MA0141.1	0.74
MA0142.1	MA0142.1	0.638
MA0143.1	MA0143.1	0.58
MA0144.1	MA0144.1	0.281
MA0145.1	MA0145.1	0.972
MA0146.1	MA0146.1	0.427
MA0147.1	MA0147.1	0.182
MA0148.1	MA0148.1	0.122
MA0149.1	MA0149.1	0.0946
MA0150.1	MA0150.1	0.66
MA0152.1	MA0152.1	0.0936
MA0153.1	MA0153.1	0.596
MA0154.1	MA0154.1	0.00677
MA0155.1	MA0155.1	0.705
MA0156.1	MA0156.1	3.45293e-22
MA0157.1	MA0157.1	0.0111
MA0159.1	MA0159.1	0.105
MA0160.1	MA0160.1	0.341
MA0162.1	MA0162.1	0.882
MA0163.1	MA0163.1	1.2789e-11
MA0164.1	MA0164.1	0.518
MA0258.1	MA0258.1	0.199
MA0259.1	MA0259.1	0.481

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12187

Novel motif	Logo	P-value
1	1	0.239
10	10	0.0174
100	100	0.9
101	101	0.251
102	102	0.514
103	103	0.157
104	104	0.435
105	105	0.18
106	106	0.643
107	107	0.231
108	108	0.676
109	109	0.0478
11	11	0.0574
110	110	0.519
111	111	0.286
112	112	0.373
113	113	0.275
114	114	0.187
115	115	0.127
116	116	0.745
117	117	0.00463
118	118	0.298
119	119	0.807
12	12	0.688
120	120	0.499
121	121	0.781
122	122	0.253
123	123	0.111
124	124	0.0597
125	125	0.853
126	126	0.258
127	127	0.406
128	128	0.782
129	129	0.243
13	13	0.601
130	130	0.593
131	131	0.725
132	132	0.747
133	133	0.983
134	134	0.881
135	135	0.253
136	136	0.775
137	137	0.0599
138	138	0.343
139	139	0.0069
14	14	0.256
140	140	0.0363
141	141	0.988
142	142	0.932
143	143	2.42916e-5
144	144	0.702
145	145	0.426
146	146	0.145
147	147	0.0414
148	148	0.228
149	149	0.644
15	15	0.0508
150	150	0.754
151	151	0.348
152	152	0.42
153	153	0.73
154	154	0.973
155	155	0.0411
156	156	0.446
157	157	0.645
158	158	0.142
159	159	0.125
16	16	0.702
160	160	0.778
161	161	0.376
162	162	0.265
163	163	0.834
164	164	0.398
165	165	0.301
166	166	0.621
167	167	0.284
168	168	0.0885
169	169	0.782
17	17	0.626
18	18	0.439
19	19	0.57
2	2	0.594
20	20	0.855
21	21	0.44
22	22	0.856
23	23	0.851
24	24	0.55
25	25	0.0748
26	26	0.425
27	27	0.0231
28	28	0.323
29	29	0.0391
3	3	0.054
30	30	0.643
31	31	0.529
32	32	0.312
33	33	0.507
34	34	0.682
35	35	0.0526
36	36	0.0213
37	37	0.164
38	38	0.542
39	39	0.627
4	4	0.638
40	40	0.488
41	41	0.116
42	42	0.0591
43	43	0.202
44	44	0.582
45	45	0.998
46	46	0.0918
47	47	0.0631
48	48	0.132
49	49	0.113
5	5	0.152
50	50	0.58
51	51	0.525
52	52	0.439
53	53	0.222
54	54	0.422
55	55	0.319
56	56	0.54
57	57	0.623
58	58	0.0467
59	59	0.339
6	6	0.891
60	60	0.282
61	61	0.0857
62	62	0.022
63	63	0.698
64	64	0.176
65	65	0.585
66	66	0.709
67	67	0.838
68	68	0.786
69	69	0.807
7	7	0.164
70	70	0.0123
71	71	0.0764
72	72	0.0305
73	73	0.651
74	74	0.392
75	75	0.0247
76	76	0.378
77	77	0.615
78	78	0.122
79	79	0.333
8	8	0.772
80	80	8.81702e-4
81	81	0.338
82	82	0.0955
83	83	0.667
84	84	0.556
85	85	0.714
86	86	0.151
87	87	0.626
88	88	0.823
89	89	0.783
9	9	0.403
90	90	0.0779
91	91	0.881
92	92	0.239
93	93	0.155
94	94	0.0696
95	95	0.0217
96	96	0.0816
97	97	0.44
98	98	0.271
99	99	0.102

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12187

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007964!RNA-Seq@DRS012116
+|DRA_sample_Accession=RNA-Seq@SAMD00013684
-|accession_numbers=CAGE;DRX008071;DRR008943;DRZ000368;DRZ001753!RNA-Seq;DRX012352;DRR013800;DRZ003001;NA
+|accession_numbers=CAGE;DRX008071;DRR008943;DRZ000368;DRZ001753;DRZ011718;DRZ013103!RNA-Seq;DRX012352;DRR013800;DRZ003001;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.98!94.43!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.94!85.40!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.92!81.29!EOMES;;chr1:25256756..25256774,-!p1@RUNX3!1.77!105.10!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.76!76.36!STAT4;;chr5:133451294..133451310,+!p2@TCF7!1.75!55.84!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.75!55.02!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.72!50.91!PLEK;;chr2:231090433..231090469,+!p1@SP140!1.69!47.63!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!60.76!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.64!114.14!AKNA;;chr17:37934365..37934387,-!p2@IKZF3!1.63!41.88!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.60!38.59!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.57!36.13!LEF1;;chr14:75988771..75988826,+!p1@BATF!1.55!45.98!BATF;;chr1:26697243..26697258,-!p1@ZNF683!1.53!32.85!ZNF683;;chr19:16435625..16435682,+!p1@KLF2!1.50!928.70!KLF2;;chr20:50159198..50159299,-!p1@NFATC2!1.49!43.52!NFATC2;;chr4:57522166..57522260,-!p2@HOPX!1.49!34.49!HOPX;;chr5:133450365..133450444,+!p1@TCF7!1.47!124.81!TCF7;;chr4:57522598..57522664,-!p3@HOPX!1.42!25.45!HOPX;;chr7:50344251..50344288,+!p3@IKZF1!1.39!23.81!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.38!22.99!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.37!62.41!ZNF101;;chr15:60884706..60884743,-!p1@RORA!1.35!108.39!RORA;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.35!IKZF1;;chr5:133451347..133451358,+!p3@TCF7!1.32!19.71!TCF7;;chr20:56195474..56195506,-!p1@ZBP1!1.26!17.24!ZBP1;;chr6:106546808..106546833,+!p3@PRDM1!1.24!20.53!PRDM1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.53!SATB1;;chr11:128392273..128392308,-!p2@ETS1!1.22!64.87!ETS1;;chr2:231090471..231090504,+!p2@SP140!1.22!15.60!SP140;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.60!LEF1;;chr17:38020557..38020572,-!p4@IKZF3!1.22!15.60!IKZF3;;chr4:57522674..57522699,-!p5@HOPX!1.20!14.78!HOPX;;chr8:67525443..67525459,-!p2@MYBL1!1.19!21.35!MYBL1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.71!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.17!13.96!FOXP1;;chr17:37934280..37934299,-!p6@IKZF3!1.17!13.96!IKZF3;;chr17:38020516..38020544,-!p5@IKZF3!1.17!13.96!IKZF3;;chr11:128392085..128392232,-!p1@ETS1!1.16!449.98!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.14!80.47!ELF1;;chr17:38020392..38020477,-!p1@IKZF3!1.12!12.32!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.12!12.32!IKZF1;;chr1:26697189..26697205,-!p2@ZNF683!1.12!12.32!ZNF683;;chr11:128563948..128564003,+!p1@FLI1!1.10!140.41!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.10!25.45!ZBTB25;;chr6:106546731..106546755,+!p5@PRDM1!1.10!11.50!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.50!CREB3L2;;chr3:71542684..71542720,-!p18@FOXP1!1.10!11.50!FOXP1;;chr4:57522513..57522548,-!p4@HOPX!1.07!10.67!HOPX;;chr14:75988831..75988847,+!p2@BATF!1.07!10.67!BATF;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.32!GATA3;;chrX:106960285..106960299,-!p1@TSC22D3!1.05!277.54!TSC22D3;;chr4:81104895..81104920,+!p2@PRDM8!1.05!15.60!PRDM8;;chr13:74707894..74707947,-!p6@KLF12!1.05!11.50!KLF12;;chr2:97202991..97203043,+!p3@ARID5A!1.04!9.85!ARID5A;;chr4:109089901..109089930,-!p3@LEF1!1.04!9.85!LEF1;;chr6:391743..391759,+!p1@IRF4!1.04!9.85!IRF4;;chr6:106546786..106546802,+!p6@PRDM1!1.00!9.03!PRDM1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.03!IKZF1;;chr20:52226313..52226350,-!p3@ZNF217!1.00!9.03!ZNF217;;chr16:89789271..89789291,+!p5@ZNF276!1.00!9.03!ZNF276;;chr9:3525727..3525828,-!p2@RFX3!0.99!22.99!RFX3;;chr8:60031619..60031676,-!p1@TOX!0.98!18.89!TOX;;chr8:67525473..67525518,-!p1@MYBL1!0.97!19.71!MYBL1;;chr20:44600199..44600219,-!p3@ZNF335!0.97!11.50!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.97!10.67!AKNA;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.85!SNAI3;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.41!FOXP1;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.32!ZNF540;;chr1:92951607..92951661,-!p1@GFI1!0.96!8.21!GFI1;;chr3:18487057..18487105,-!p4@SATB1!0.96!8.21!SATB1;;chr11:47400078..47400106,-!p1@SPI1!0.96!8.21!SPI1;;chr6:91006518..91006570,-!p1@BACH2!0.94!18.06!BACH2;;chr19:53289995..53290050,-!p1@ZNF600!0.93!32.02!ZNF600;;chr17:36861675..36861697,+!p3@MLLT6!0.93!18.06!MLLT6;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.63!ZMAT1;;chr4:109088940..109089037,-!p4@LEF1!0.92!7.39!LEF1;;chr13:74708029..74708077,-!p2@KLF12!0.91!21.35!KLF12;;chr17:36861735..36861755,+!p4@MLLT6!0.91!12.32!MLLT6;;chr6:45296048..45296082,+!p1@RUNX2!0.91!8.21!RUNX2;;chr16:68119324..68119364,+!p1@NFATC3!0.89!32.02!NFATC3;;chr21:36421535..36421610,-!p2@RUNX1!0.89!25.45!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.89!8.21!GATA3;;chr19:19729477..19729542,-!p1@PBX4!0.88!14.78!PBX4;;chr17:38020607..38020621,-!p9@IKZF3!0.88!6.57!IKZF3;;chr21:36421347..36421380,-!p8@RUNX1!0.88!6.57!RUNX1;;chr3:18480217..18480239,-!p3@SATB1!0.88!6.57!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.88!6.57!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!0.88!6.57!LEF1;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.57!NR3C2;;chr16:89787937..89787971,+!p1@ZNF276!0.87!17.24!ZNF276;;chr16:79634624..79634642,-!p1@MAF!0.85!25.45!MAF;;chr14:64971288..64971316,-!p2@ZBTB25!0.85!19.71!ZBTB25;;chr2:178128250..178128293,-!p6@NFE2L2!0.84!15.60!NFE2L2;;chr15:60884747..60884774,-!p3@RORA!0.83!14.78!RORA;;chr14:99738138..99738163,-!p1@BCL11B!0.83!5.75!BCL11B;;chr17:45810816..45810838,+!p2@TBX21!0.83!5.75!TBX21;;chr4:109088089..109088101,-!p11@LEF1!0.83!5.75!LEF1;;chr20:56195525..56195556,-!p2@ZBP1!0.83!5.75!ZBP1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.75!ZNF727;;chr19:9546177..9546224,-!p1@ZNF266!0.82!42.70!ZNF266;;chr4:140005443..140005527,-!p2@ELF2!0.82!35.31!ELF2;;chr11:128392309..128392350,-!p3@ETS1!0.82!13.96!ETS1;;chr17:46621311..46621332,-!p8@HOXB2!0.82!7.39!HOXB2;;chr19:37464063..37464127,+!p2@ZNF568!0.81!7.39!ZNF568;;chr14:90085458..90085557,-!p1@FOXN3!0.80!59.94!FOXN3;;chr2:97202480..97202499,+!p1@ARID5A!0.80!58.30!ARID5A;;chr19:58220517..58220583,-!p1@ZNF154!0.80!18.06!ZNF154;;chr2:148778973..148779035,+!p3@MBD5!0.80!14.78!MBD5;;chr18:5295679..5295734,-!p2@ZFP161!0.80!12.32!ZFP161;;chr16:68573640..68573660,+!p3@ZFP90!0.80!7.39!ZFP90;;chrX:131624056..131624069,-!p2@MBNL3!0.80!7.39!MBNL3;;chr4:38665769..38665801,+!p2@KLF3!0.79!50.91!KLF3;;chr19:20748574..20748599,-!p1@ZNF737!0.79!33.67!ZNF737;;chr16:30583204..30583233,-!p5@ZNF688!0.79!6.57!ZNF688;;chr11:13299319..13299424,+!p1@ARNTL!0.78!55.02!ARNTL;;chr9:3525867..3525902,-!p3@RFX3!0.78!18.89!RFX3;;chr19:23941680..23941704,-!p1@ZNF681!0.78!15.60!ZNF681;;chr16:89789248..89789270,+!p8@ZNF276!0.77!4.93!ZNF276;;chr17:38020481..38020506,-!p7@IKZF3!0.77!4.93!IKZF3;;chr2:192015677..192015691,-!p3@STAT4!0.77!4.93!STAT4;;chr6:106546834..106546850,+!p4@PRDM1!0.77!4.93!PRDM1;;chr1:10754477..10754517,-!p1@CASZ1!0.76!8.21!CASZ1;;chr6:91006575..91006602,-!p2@BACH2!0.76!7.39!BACH2;;chr1:45805693..45805718,+!p3@TOE1!0.75!10.67!TOE1;;chr16:79634595..79634620,-!p2@MAF!0.75!9.03!MAF;;chr19:12405645..12405685,-!p1@ZNF44!0.74!17.24!ZNF44;;chr19:12444440..12444455,-!p1@ZNF563!0.74!8.21!ZNF563;;chr4:185395191..185395226,-!p4@IRF2!0.74!6.57!IRF2;;chr18:3449720..3449749,+!p2@TGIF1!0.73!9.85!TGIF1;;chr16:89787973..89788001,+!p3@ZNF276!0.73!9.03!ZNF276;;chr5:131826457..131826514,-!p1@IRF1!0.72!188.86!IRF1;;chr7:99097863..99097936,-!p1@ZNF394!0.72!47.63!ZNF394;;chr19:9546227..9546257,-!p2@ZNF266!0.72!24.63!ZNF266;;chr7:21467674..21467727,+!p1@SP4!0.72!18.89!SP4;;chr16:68119440..68119480,+!p4@NFATC3!0.72!7.39!NFATC3;;chr19:53039233..53039247,+!p2@ZNF808!0.72!6.57!ZNF808;;chr2:145274981..145274994,-!p9@ZEB2!0.72!6.57!ZEB2;;chr16:68118689..68118733,+!p3@NFATC3!0.71!11.50!NFATC3;;chr16:88752861..88752884,-!p2@SNAI3!0.71!4.11!SNAI3;;chr7:50348268..50348366,+!p4@IKZF1!0.71!4.11!IKZF1;;chr8:60031563..60031574,-!p7@TOX!0.71!4.11!TOX;;chrX:118740008..118740045,-!p3@NKRF!0.71!4.11!NKRF;;chr2:231090344..231090361,-!p3@SP110!0.71!4.11!SP110;;chr3:27764190..27764208,-!p2@EOMES!0.71!4.11!EOMES;;chr4:57522701..57522712,-!p10@HOPX!0.71!4.11!HOPX;;chr1:158978768..158978800,+!p8@IFI16!0.71!4.11!IFI16;;chr20:52226401..52226412,-!p16@ZNF217!0.71!4.11!ZNF217;;chr2:145277640..145277771,-!p1@ZEB2!0.70!61.58!ZEB2;;chr19:49140609..49140643,-!p1@DBP!0.70!25.45!DBP;;chr19:58694742..58694800,+!p2@ZNF274!0.70!18.06!ZNF274;;chr6:12008986..12009016,+!p3@HIVEP1!0.70!13.96!HIVEP1;;chr14:65569101..65569119,-!p3@MAX!0.70!13.96!MAX;;chr19:52674696..52674758,-!p1@ZNF836!0.70!13.14!ZNF836;;chr11:16759983..16760029,-!p2@SOX6!0.70!6.57!SOX6;;chr19:37341160..37341194,-!p2@ZNF790!0.69!9.03!ZNF790;;chr9:2016724..2016752,+!p7@SMARCA2!0.69!8.21!SMARCA2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.69!4.93!ZFP36L1;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.28!NFKB2;;chr6:109804367..109804402,-!p2@ZBTB24!0.68!12.32!ZBTB24;;chrX:131623932..131623964,-!p7@MBNL3!0.68!5.75!MBNL3;;chr8:72756023..72756055,-!p6@MSC!0.68!4.93!MSC;;chr4:81104865..81104886,+!p6@PRDM8!0.68!4.11!PRDM8;;chr19:19976634..19976677,+!p2@ZNF253!0.67!14.78!ZNF253;;chr16:3313791..3313834,+!p2@ZNF263!0.67!9.03!ZNF263;;chr19:12512062..12512094,-!p1@ZNF799!0.67!8.21!ZNF799;;chr12:133707021..133707071,-!p2@ZNF891!0.67!6.57!ZNF891;;chr8:67525524..67525543,-!p3@MYBL1!0.67!6.57!MYBL1;;chr16:30583169..30583200,-!p2@ZNF688!0.67!5.75!ZNF688;;chrX:131623982..131624011,-!p6@MBNL3!0.67!5.75!MBNL3;;chr8:71316021..71316068,-!p1@NCOA2!0.66!38.59!NCOA2;;chr19:19843900..19843928,-!p1@ZNF14!0.66!20.53!ZNF14;;chr2:208394817..208394834,+!p3@CREB1!0.66!16.42!CREB1;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.66!11.50!ZNF525;;chr3:141121847..141121868,+!p5@ZBTB38!0.66!5.75!ZBTB38;;chr19:57183114..57183145,-!p1@ZNF835!0.66!4.11!ZNF835;;chr7:64838786..64838809,+!p2@ZNF92!0.65!22.99!ZNF92;;chr19:37709076..37709154,+!p1@ZNF383!0.65!13.14!ZNF383;;chr8:123793860..123793921,+!p2@ZHX2!0.65!10.67!ZHX2;;chr3:114819124..114819200,-!p3@ZBTB20!0.65!9.03!ZBTB20;;chr16:79633894..79633954,-!p3@MAF!0.65!7.39!MAF;;chr11:85375237..85375277,-!p4@CREBZF!0.65!4.11!CREBZF;;chr5:172483347..172483407,+!p1@C5orf41!0.64!29.56!CREBRF;;chr7:64126503..64126528,+!p1@ZNF107!0.64!27.92!ZNF107;;chr3: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12187.12211-129D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:12211-129D6
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
 |library_id=CNhs12187!RDhi10019
-|library_ids=CNhs12187!RDhi10019
+|library_id_phase_based=2:CNhs12187
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12211
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12211
 |name=CD8+ T Cells (pluriselect), donor090612, donation3
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12187,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12211-129D6;search_select_hide=table117:FF:12211-129D6
 }}

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FF:12211-129D6: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0