FF:12227-129F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005021 | |||
|accession_numbers=CAGE;DRX008572;DRR009444;DRZ000869;DRZ002254;DRZ012219;DRZ013604 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0104976 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12227-129F4 | |id=FF:12227-129F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0104976 | ||
|is_obsolete= | |||
|library_id=CNhs12574 | |||
|library_id_phase_based=2:CNhs12574 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12227 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12227 | |||
|name=nasal epithelial cells, donor2 | |name=nasal epithelial cells, donor2 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12574,LSID917,release012,COMPLETED | |profile_hcage=CNhs12574,LSID917,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0497535058595864,0,0.337450112515523,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.457311307048017,0,0,0.0567485255975449,0,0,0,0.479210368703025,0,0.112113639677915,0,0,0.0771149461671103,0,0,0,0,0,0,0,0,0,0,0,0,0.178528146780858,0,0,0,0.210071535945973,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.210071535945973,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.457311307048017,0,0,0.210071535945973,0,0,0,0,0,0,0,0,0,0.0376250899235886,0.0287911386921262,0,0,0,-0.058615231152321,-0.211197402695869,0.81510801513792,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0791527844421535,0,0,0,0.143627681668682,0.223175540818715,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.210071535945973,-0.0980353512377064,0,0,0,0,0.210071535945973,0,0,0,0,0,0,-0.247178875285564,0,-0.123033462022779,0.0665563934225006,0,0,-0.322243318936585,0,0,0,0,0,0,0,0,0,0.546967411643982,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,0.141727274868604,0,0.0734988108722521,0,0,0.0103214770032765,0,-0.120879483793741,-0.0827201683234173,0.210071535945973,0.237977710671681,0.163266877053592,0,0,0,0.276822775164127,0.443921382739508,0,0,-0.0167440837788876,0.0287219173853135,0,0,0.695222352875402,0,0.206497916974973,-0.0604397418968705,0,-0.0174810716956485,0,0,0,0,0,0,0,0,0,0,0,0.0475423011515496,0.0240641600502604,0,0,0.351052756729229,0,0.0177808592578647,0,0,0.0840251510914504,0.0814207802443685,0.113870491562985,0.0342255567592489,0,-0.0923181910639407,-0.0170080332258673,-0.0541166021538395,-0.058615231152321,-0.147401849371139,-0.189981719549847,0,0.0795110698578585,-0.243657675652062,0.0294977474161754,0.0287911386921262,0.0375307285153404,-0.0125598279273709,0.00473166405077707,0,0,0,0.274398664269109,0,0.141037631564029,-0.280043178530801,0.088411439017357,0.019270664294009,0.274691478962617,0.0955891383433665,-0.101630576252342,-0.0395325284566706,0.0851785005653554,-0.0277164287811374,-0.045229080199738,0,0,0.119967363983979,0.0428549078360094,0.108561794063661,-0.00194353374879808,0,0.0586374916509694,-0.0683442610773682,0,0.188753352609783,0.0294624720006327,0,-0.0481876884991045,-0.227724474142183,0,0,0,0,0,-0.119908883518251,-0.188439386300937,-0.232855561555545,0,-0.116005441660914,0.0288156920823203,-0.068630426828578,0,0.284504523410911,0.255140545437212,0.399981951641633,0.150152581802288,0,-0.0665440198699379,0.0797936353491024,-0.164990696339003,-0.422394805391737,0.71800867748539,0.283677107575418,0.571291778902651,-0.06737443372942,-0.0602176310397817,0.0774004100906517,0.525755806954593,0.0385685166237324,-0.426233443470363,0.384034627461739,0.0314466345101879,-0.13629295364408,0,-0.0308517365911405,0,-0.330541485895626,0,-0.151243896916426,0.236021752823976,-0.439289374580686,0.0537325121755567,0,0.0830335452688749,0.0313271398104048,0.210071535945973,0.184926933876037,0,0.54261495346195,0.0597044526113332,0.316453074838566,-0.0361240494999745,-0.138989456679195,0,0.137543064971274,0.210071535945973,0.351052756729229,0.0605437279804485,-0.235476037764389,1.63021603027584,0.0687031040285162,0.119519319537049,-0.394144505249322,0.0941004625110385,0.351052756729229,0,0.368448703358424,0,0,0.122794169932414,-0.0389390970578096,-0.619783323958633,0.0977264152424736,-0.0230514347853784,-0.108622809454255,0,0,0.0325437699807969,0,-0.214112529290721,0,0,0.610995023412467,0,0,0.105035767972986,1.33301477157228,0.0457634024574776,0,0,0,0,0,0,0,-0.0949875844661179,-0.144761794270475,0,0.218510145465357,0,0,0,0,0,0.0561575443873411,0,0,0.692324984171503,0.0171410585518865,-0.12301741567642,0.175526378364614,0,0,0,-0.215723402553475,-0.203236562094724,0,0.219190050231598,0,0.105035767972986,0,0,-0.0861409897892114,0,0,0,0,1.84538022370862,0.396910339233289,0,1.16689464392047,0,-0.27695440160179,0,0,0,0,0.271380406171531,0,0,-0.174618866338363,0,0.11478172632445,0.128489656399131,0,-0.124165050382343,0.0776275745356254,0.68727732776671,0,0.457311307048017,0.281267821672063,0,0,-0.048766168691456,0,0,-0.0209247759461169,0,0,0,0,0,0,0.136738244329474,0,0,0,0,0,0,0,0,0,0,0,0.0880298243718087,-0.0922240566585104,0,0,0,0,0,0,0,0.080929744894083,-0.0722570027784145,0,0,0,0,0,0,0,0,-0.26135440371727,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.179949174854503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0867524499105248,0.337450112515523,0,0,0,0,0,0,0,0.501622206091125,0,0,0,0,2.14920377668228,0,0,0,-0.104796384789156,0,0.0497535058595864,0,0,0.210071535945973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105035767972986,0,0,0,-0.112317461404249,-0.0137783039323163,0.172289207187581,0.079505695799806,0,0,0.131732764242181,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.112113639677915,0,0,0.188529336537075,0,0,0,0,0,0,0.049566798641564,0.248545979718484,0.0220485956807747,0,0,0,-0.054385572482455,0,0,0,0.210071535945973,0.284275369310328,0,0,0,0,0,0,0,0,0.351052756729229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0567485255975449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.244225077390974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210071535945973,0,0.453154801271408,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.529506007199854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0.175526378364614,0,0,0,0,0,-0.087428497801853,0,0,0.210071535945973,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.093948608964972,0,0,0,0,0,0,0,0,0,0,0,0,0.148751356795846,0,0,0,0,0,0,0,0,0,0.210071535945973,-0.0484300422256687,0,0,0,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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=8.082 | |rna_weight_ug=8.082 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1514356824342e-227!GO:0005737;cytoplasm;8.1986816069308e-183!GO:0043226;organelle;3.62550399370534e-177!GO:0043229;intracellular organelle;1.38795994433059e-176!GO:0043227;membrane-bound organelle;1.72700080805851e-162!GO:0043231;intracellular membrane-bound organelle;1.72700080805851e-162!GO:0044422;organelle part;1.19112203769922e-116!GO:0044446;intracellular organelle part;6.47856397843726e-115!GO:0044444;cytoplasmic part;1.03858884499794e-114!GO:0005515;protein binding;1.01484169505746e-103!GO:0032991;macromolecular complex;8.21099623599956e-90!GO:0044238;primary metabolic process;3.43893905388258e-80!GO:0044237;cellular metabolic process;8.47077444124787e-79!GO:0043170;macromolecule metabolic process;1.86117936425591e-74!GO:0030529;ribonucleoprotein complex;4.10265299483348e-70!GO:0005634;nucleus;3.63546016491345e-66!GO:0043233;organelle lumen;1.06070720081829e-60!GO:0031974;membrane-enclosed lumen;1.06070720081829e-60!GO:0003723;RNA binding;4.86997616578821e-60!GO:0044428;nuclear part;6.25352512726198e-56!GO:0019538;protein metabolic process;6.64287744190739e-54!GO:0016043;cellular component organization and biogenesis;1.9945531523392e-51!GO:0006412;translation;1.46834771953403e-49!GO:0005739;mitochondrion;3.55538995581652e-49!GO:0043234;protein complex;1.16167077564332e-48!GO:0005840;ribosome;2.23163805517471e-46!GO:0044267;cellular protein metabolic process;2.23163805517471e-46!GO:0044260;cellular macromolecule metabolic process;2.98456212616692e-46!GO:0010467;gene expression;2.12506909104301e-45!GO:0031090;organelle membrane;2.89647358684532e-44!GO:0033036;macromolecule localization;1.19375247587665e-43!GO:0015031;protein transport;1.93236900960512e-43!GO:0043283;biopolymer metabolic process;2.4662940599856e-42!GO:0003735;structural constituent of ribosome;4.63365147002189e-42!GO:0045184;establishment of protein localization;1.14170050343622e-41!GO:0005829;cytosol;1.50998570045727e-41!GO:0008104;protein localization;1.27849143929556e-40!GO:0009058;biosynthetic process;3.57884339974638e-38!GO:0044249;cellular biosynthetic process;7.34559589718338e-38!GO:0031981;nuclear lumen;2.71864321681002e-37!GO:0033279;ribosomal subunit;2.87826900429579e-37!GO:0009059;macromolecule biosynthetic process;7.49058144377746e-37!GO:0006396;RNA processing;5.5449632009822e-35!GO:0044429;mitochondrial part;6.22216684982225e-35!GO:0046907;intracellular transport;1.15756780951544e-32!GO:0031967;organelle envelope;1.54823561265086e-32!GO:0031975;envelope;2.55627080175719e-32!GO:0065003;macromolecular complex assembly;2.6967359060548e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.65395224115572e-31!GO:0022607;cellular component assembly;7.10893888597882e-31!GO:0043228;non-membrane-bound organelle;1.28184617317267e-30!GO:0043232;intracellular non-membrane-bound organelle;1.28184617317267e-30!GO:0016071;mRNA metabolic process;4.398821140423e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.81731866566002e-29!GO:0006886;intracellular protein transport;1.05785587660233e-28!GO:0006996;organelle organization and biogenesis;4.02098671667816e-28!GO:0008380;RNA splicing;4.18910436295572e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.38893785580466e-26!GO:0008134;transcription factor binding;1.44461914599609e-25!GO:0006397;mRNA processing;5.94205027588161e-25!GO:0044445;cytosolic part;1.50097034350213e-24!GO:0005654;nucleoplasm;3.22169093787137e-24!GO:0005740;mitochondrial envelope;3.0415269716266e-23!GO:0051641;cellular localization;2.61580579131736e-22!GO:0051649;establishment of cellular localization;2.61580579131736e-22!GO:0031966;mitochondrial membrane;1.15045032356483e-21!GO:0044451;nucleoplasm part;8.73770544835638e-21!GO:0019866;organelle inner membrane;2.38175481284509e-20!GO:0016070;RNA metabolic process;2.48408988617166e-20!GO:0006366;transcription from RNA polymerase II promoter;2.58386217930999e-20!GO:0015935;small ribosomal subunit;5.31606079058856e-20!GO:0012501;programmed cell death;1.25234059412338e-19!GO:0048770;pigment granule;1.25234059412338e-19!GO:0042470;melanosome;1.25234059412338e-19!GO:0006915;apoptosis;2.88931097349465e-19!GO:0012505;endomembrane system;5.47420838720067e-19!GO:0005743;mitochondrial inner membrane;6.29524205175459e-19!GO:0003676;nucleic acid binding;6.39149847076422e-19!GO:0008219;cell death;1.62477847101522e-18!GO:0016265;death;1.62477847101522e-18!GO:0005681;spliceosome;1.69659592069953e-18!GO:0015934;large ribosomal subunit;2.81241422554771e-18!GO:0006457;protein folding;5.72177666165676e-18!GO:0022618;protein-RNA complex assembly;1.06647797470955e-17!GO:0006119;oxidative phosphorylation;1.28144265563843e-17!GO:0005783;endoplasmic reticulum;1.49022320488962e-17!GO:0048523;negative regulation of cellular process;3.11545145767853e-17!GO:0050794;regulation of cellular process;7.56964303351088e-17!GO:0003712;transcription cofactor activity;1.98257760547375e-16!GO:0006605;protein targeting;5.63186783257273e-16!GO:0044455;mitochondrial membrane part;7.51521669852471e-16!GO:0000166;nucleotide binding;9.72703121852618e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.3106680243743e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.38893305962535e-15!GO:0043412;biopolymer modification;1.80086934789868e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.81139672664867e-15!GO:0019941;modification-dependent protein catabolic process;1.81139672664867e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.81139672664867e-15!GO:0048519;negative regulation of biological process;1.98007541596007e-15!GO:0006512;ubiquitin cycle;3.1497399442854e-15!GO:0044257;cellular protein catabolic process;3.82954947077467e-15!GO:0031980;mitochondrial lumen;4.40323204561802e-15!GO:0005759;mitochondrial matrix;4.40323204561802e-15!GO:0044265;cellular macromolecule catabolic process;5.35082312458864e-15!GO:0044432;endoplasmic reticulum part;5.80090624591937e-15!GO:0008135;translation factor activity, nucleic acid binding;6.68545996901708e-15!GO:0005794;Golgi apparatus;8.41979082842394e-15!GO:0006464;protein modification process;8.61976211967359e-15!GO:0016192;vesicle-mediated transport;1.88216456266886e-14!GO:0043285;biopolymer catabolic process;2.07051531267487e-14!GO:0006259;DNA metabolic process;2.16543213300066e-14!GO:0016462;pyrophosphatase activity;3.94682527335444e-14!GO:0016874;ligase activity;3.94682527335444e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.1452760010686e-14!GO:0050789;regulation of biological process;4.74696868690153e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.79845906814829e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.51419221156555e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;6.95545593711381e-14!GO:0043687;post-translational protein modification;9.0377063639386e-14!GO:0005730;nucleolus;1.14640987394829e-13!GO:0017111;nucleoside-triphosphatase activity;1.16485127173073e-13!GO:0030163;protein catabolic process;3.01537840913933e-13!GO:0003743;translation initiation factor activity;5.04161541709984e-13!GO:0006413;translational initiation;5.28561978242016e-13!GO:0048193;Golgi vesicle transport;8.03784028379401e-13!GO:0007049;cell cycle;8.81639071641373e-13!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.34805296129563e-12!GO:0009057;macromolecule catabolic process;1.4587727656328e-12!GO:0051082;unfolded protein binding;1.8820321404428e-12!GO:0005761;mitochondrial ribosome;1.93603451011489e-12!GO:0000313;organellar ribosome;1.93603451011489e-12!GO:0006461;protein complex assembly;2.32579220758924e-12!GO:0005746;mitochondrial respiratory chain;4.51649790733695e-12!GO:0006913;nucleocytoplasmic transport;4.88738164376944e-12!GO:0051186;cofactor metabolic process;7.03552885877704e-12!GO:0048522;positive regulation of cellular process;7.49438026004286e-12!GO:0042981;regulation of apoptosis;9.83483929139182e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.04576846349878e-11!GO:0043067;regulation of programmed cell death;1.11974914699314e-11!GO:0051169;nuclear transport;1.25005817178013e-11!GO:0044248;cellular catabolic process;1.28290464446467e-11!GO:0051246;regulation of protein metabolic process;1.99737807260254e-11!GO:0006446;regulation of translational initiation;2.16150195151176e-11!GO:0016564;transcription repressor activity;2.41164057101942e-11!GO:0050136;NADH dehydrogenase (quinone) activity;4.56471101374696e-11!GO:0003954;NADH dehydrogenase activity;4.56471101374696e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.56471101374696e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.92888732660256e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.44870609060264e-10!GO:0005789;endoplasmic reticulum membrane;1.71204113614587e-10!GO:0032553;ribonucleotide binding;2.2151031040283e-10!GO:0032555;purine ribonucleotide binding;2.2151031040283e-10!GO:0042254;ribosome biogenesis and assembly;3.28666773840291e-10!GO:0006732;coenzyme metabolic process;3.38938781573192e-10!GO:0031324;negative regulation of cellular metabolic process;5.40395596839411e-10!GO:0006323;DNA packaging;5.45461824055057e-10!GO:0008565;protein transporter activity;6.30541984010114e-10!GO:0005635;nuclear envelope;6.46621133913018e-10!GO:0000074;regulation of progression through cell cycle;9.27743150986007e-10!GO:0017038;protein import;9.27743150986007e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.93499779766408e-10!GO:0017076;purine nucleotide binding;1.35124809741517e-09!GO:0043069;negative regulation of programmed cell death;1.37615060049947e-09!GO:0005793;ER-Golgi intermediate compartment;1.43037546410926e-09!GO:0051726;regulation of cell cycle;1.43945236620678e-09!GO:0016604;nuclear body;1.49196168914478e-09!GO:0019222;regulation of metabolic process;1.50182007118977e-09!GO:0016481;negative regulation of transcription;1.66053839560941e-09!GO:0030964;NADH dehydrogenase complex (quinone);1.79356522574018e-09!GO:0045271;respiratory chain complex I;1.79356522574018e-09!GO:0005747;mitochondrial respiratory chain complex I;1.79356522574018e-09!GO:0009892;negative regulation of metabolic process;2.29702733674315e-09!GO:0031965;nuclear membrane;2.38265386787121e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.39405551987104e-09!GO:0042773;ATP synthesis coupled electron transport;2.39405551987104e-09!GO:0048518;positive regulation of biological process;2.42357114268108e-09!GO:0016563;transcription activator activity;2.9440243507774e-09!GO:0043066;negative regulation of apoptosis;3.08555442425619e-09!GO:0022402;cell cycle process;3.41888483955928e-09!GO:0065007;biological regulation;3.69925632808373e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.54867276078213e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.278994928151e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;7.97181608733034e-09!GO:0000375;RNA splicing, via transesterification reactions;7.97181608733034e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.97181608733034e-09!GO:0006916;anti-apoptosis;7.97181608733034e-09!GO:0016607;nuclear speck;8.25064115825179e-09!GO:0030120;vesicle coat;8.41338295196942e-09!GO:0030662;coated vesicle membrane;8.41338295196942e-09!GO:0048468;cell development;8.41338295196942e-09!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.15764486758476e-09!GO:0045893;positive regulation of transcription, DNA-dependent;9.93727122851649e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.10222079677739e-08!GO:0003714;transcription corepressor activity;1.25592553383506e-08!GO:0048475;coated membrane;1.25867497326109e-08!GO:0030117;membrane coat;1.25867497326109e-08!GO:0003924;GTPase activity;1.25867497326109e-08!GO:0003713;transcription coactivator activity;1.45560400557463e-08!GO:0045941;positive regulation of transcription;1.47105493224155e-08!GO:0008639;small protein conjugating enzyme activity;1.63629446945884e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.76515182626143e-08!GO:0005768;endosome;1.82101861982154e-08!GO:0009055;electron carrier activity;2.14013345901836e-08!GO:0051276;chromosome organization and biogenesis;2.27255750017975e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.29446707798078e-08!GO:0004842;ubiquitin-protein ligase activity;2.71126515758037e-08!GO:0044453;nuclear membrane part;2.90805192566336e-08!GO:0006793;phosphorus metabolic process;3.28699642698357e-08!GO:0006796;phosphate metabolic process;3.28699642698357e-08!GO:0019787;small conjugating protein ligase activity;4.09347100928369e-08!GO:0007005;mitochondrion organization and biogenesis;5.92916462969075e-08!GO:0009259;ribonucleotide metabolic process;8.83943897596376e-08!GO:0005524;ATP binding;1.02629687275839e-07!GO:0015986;ATP synthesis coupled proton transport;1.41320346810054e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41320346810054e-07!GO:0006163;purine nucleotide metabolic process;1.43713777153063e-07!GO:0045786;negative regulation of progression through cell cycle;1.92027486356388e-07!GO:0016568;chromatin modification;1.92027486356388e-07!GO:0032559;adenyl ribonucleotide binding;2.00018283396503e-07!GO:0051170;nuclear import;2.16231192881743e-07!GO:0009150;purine ribonucleotide metabolic process;2.48749306000879e-07!GO:0019829;cation-transporting ATPase activity;2.81035405764141e-07!GO:0031252;leading edge;3.27333220906431e-07!GO:0006606;protein import into nucleus;3.53959301613284e-07!GO:0009141;nucleoside triphosphate metabolic process;3.60660414280845e-07!GO:0016881;acid-amino acid ligase activity;3.67840530964694e-07!GO:0009056;catabolic process;4.00146183257996e-07!GO:0005643;nuclear pore;4.03872133688157e-07!GO:0045892;negative regulation of transcription, DNA-dependent;4.2956408949711e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.99431762288414e-07!GO:0051188;cofactor biosynthetic process;5.17954280181834e-07!GO:0006164;purine nucleotide biosynthetic process;5.31333254333504e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.35786430652256e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.94122984596667e-07!GO:0009260;ribonucleotide biosynthetic process;6.71918818457634e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.88007429047687e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.88007429047687e-07!GO:0005773;vacuole;7.34193881967852e-07!GO:0031988;membrane-bound vesicle;7.65681885841596e-07!GO:0009152;purine ribonucleotide biosynthetic process;8.94699350892052e-07!GO:0016310;phosphorylation;9.91818917002015e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.04504200605628e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.04504200605628e-06!GO:0005667;transcription factor complex;1.05854754684899e-06!GO:0008092;cytoskeletal protein binding;1.11772962727685e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.11950378185257e-06!GO:0030554;adenyl nucleotide binding;1.21870662057464e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.22710344457414e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.22710344457414e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.22710344457414e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.31480279947314e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.3899458120833e-06!GO:0016072;rRNA metabolic process;1.58081306238919e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.64382443410134e-06!GO:0006364;rRNA processing;1.80581415765692e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.02244873705021e-06!GO:0043623;cellular protein complex assembly;2.16254822939797e-06!GO:0065002;intracellular protein transport across a membrane;2.16254822939797e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.18088312351644e-06!GO:0019899;enzyme binding;2.28870198337718e-06!GO:0031323;regulation of cellular metabolic process;2.3193264390437e-06!GO:0042802;identical protein binding;2.37489487665205e-06!GO:0000278;mitotic cell cycle;2.44052176617418e-06!GO:0007243;protein kinase cascade;2.5381404895651e-06!GO:0050657;nucleic acid transport;2.94266976235635e-06!GO:0051236;establishment of RNA localization;2.94266976235635e-06!GO:0050658;RNA transport;2.94266976235635e-06!GO:0005525;GTP binding;2.95798380701133e-06!GO:0032446;protein modification by small protein conjugation;2.97899752948037e-06!GO:0051427;hormone receptor binding;3.07791587543428e-06!GO:0006754;ATP biosynthetic process;3.13263589281212e-06!GO:0006753;nucleoside phosphate metabolic process;3.13263589281212e-06!GO:0006403;RNA localization;3.2317801311308e-06!GO:0005788;endoplasmic reticulum lumen;3.29018846094498e-06!GO:0046034;ATP metabolic process;3.37795506057488e-06!GO:0006752;group transfer coenzyme metabolic process;4.42493870884566e-06!GO:0044431;Golgi apparatus part;4.786392720345e-06!GO:0065009;regulation of a molecular function;5.05918276732839e-06!GO:0000785;chromatin;5.24389112507473e-06!GO:0035257;nuclear hormone receptor binding;5.52124007434439e-06!GO:0016567;protein ubiquitination;5.52192776673459e-06!GO:0006974;response to DNA damage stimulus;6.48461897821815e-06!GO:0045259;proton-transporting ATP synthase complex;7.06167038516456e-06!GO:0005770;late endosome;7.46984971016153e-06!GO:0030029;actin filament-based process;7.62101892828544e-06!GO:0006333;chromatin assembly or disassembly;7.72786428059554e-06!GO:0006399;tRNA metabolic process;8.43981154074692e-06!GO:0000323;lytic vacuole;8.76906127357282e-06!GO:0005764;lysosome;8.76906127357282e-06!GO:0045333;cellular respiration;8.90193846821643e-06!GO:0009060;aerobic respiration;9.04479270930182e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.55172536877061e-06!GO:0004812;aminoacyl-tRNA ligase activity;9.55172536877061e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.55172536877061e-06!GO:0031982;vesicle;9.82244546254056e-06!GO:0006613;cotranslational protein targeting to membrane;9.91341471325547e-06!GO:0009108;coenzyme biosynthetic process;9.95805017174586e-06!GO:0016044;membrane organization and biogenesis;1.1493602460091e-05!GO:0010468;regulation of gene expression;1.34307363240564e-05!GO:0046930;pore complex;1.34307363240564e-05!GO:0043038;amino acid activation;1.67859280563504e-05!GO:0006418;tRNA aminoacylation for protein translation;1.67859280563504e-05!GO:0043039;tRNA aminoacylation;1.67859280563504e-05!GO:0006350;transcription;1.72651369843709e-05!GO:0065004;protein-DNA complex assembly;1.87449547355449e-05!GO:0007264;small GTPase mediated signal transduction;1.92599241712363e-05!GO:0009893;positive regulation of metabolic process;1.96174414386707e-05!GO:0044440;endosomal part;2.26151239933647e-05!GO:0010008;endosome membrane;2.26151239933647e-05!GO:0031410;cytoplasmic vesicle;2.3111022102974e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.51226542561457e-05!GO:0016887;ATPase activity;2.5705715710837e-05!GO:0042623;ATPase activity, coupled;3.42242944432281e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.29683209048875e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.21360498679577e-05!GO:0006099;tricarboxylic acid cycle;5.29413230342006e-05!GO:0046356;acetyl-CoA catabolic process;5.29413230342006e-05!GO:0009967;positive regulation of signal transduction;5.52610571871736e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.02919461332756e-05!GO:0009109;coenzyme catabolic process;6.20401452291246e-05!GO:0032561;guanyl ribonucleotide binding;6.65303814671667e-05!GO:0019001;guanyl nucleotide binding;6.65303814671667e-05!GO:0005798;Golgi-associated vesicle;6.70178142061556e-05!GO:0030118;clathrin coat;8.18814927049701e-05!GO:0005905;coated pit;8.30747957684972e-05!GO:0045454;cell redox homeostasis;8.56425923131164e-05!GO:0019843;rRNA binding;8.57973415508807e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.68495700750979e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.93635834817348e-05!GO:0048471;perinuclear region of cytoplasm;9.15725577284179e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.62594630302683e-05!GO:0001726;ruffle;9.62594630302683e-05!GO:0051187;cofactor catabolic process;9.92198432972067e-05!GO:0005694;chromosome;9.92198432972067e-05!GO:0000139;Golgi membrane;0.000100805468058102!GO:0008026;ATP-dependent helicase activity;0.000104703420615417!GO:0051028;mRNA transport;0.000105842227486975!GO:0043021;ribonucleoprotein binding;0.000120464115036366!GO:0009719;response to endogenous stimulus;0.000124889834583916!GO:0006084;acetyl-CoA metabolic process;0.000125460075048541!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000135538758597156!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.000137293373649085!GO:0007010;cytoskeleton organization and biogenesis;0.000139131106098771!GO:0004298;threonine endopeptidase activity;0.000174320258634508!GO:0006417;regulation of translation;0.000181847156004058!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000191812680316089!GO:0007242;intracellular signaling cascade;0.000195215304850533!GO:0033116;ER-Golgi intermediate compartment membrane;0.00019756355036844!GO:0005762;mitochondrial large ribosomal subunit;0.000199785157489361!GO:0000315;organellar large ribosomal subunit;0.000199785157489361!GO:0031968;organelle outer membrane;0.000228404128098287!GO:0004386;helicase activity;0.000233915883397074!GO:0008283;cell proliferation;0.000239977353923272!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000243867720151881!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000246572980463838!GO:0016740;transferase activity;0.00024804865070352!GO:0009117;nucleotide metabolic process;0.000273158837817488!GO:0008654;phospholipid biosynthetic process;0.000274469612122619!GO:0006612;protein targeting to membrane;0.000278898986100144!GO:0005741;mitochondrial outer membrane;0.000291756601799819!GO:0030867;rough endoplasmic reticulum membrane;0.000297984926962847!GO:0051128;regulation of cellular component organization and biogenesis;0.000299873409763461!GO:0031325;positive regulation of cellular metabolic process;0.000306877838030625!GO:0043065;positive regulation of apoptosis;0.000332719975429093!GO:0019867;outer membrane;0.000350635165801651!GO:0008361;regulation of cell size;0.000354162895525243!GO:0051168;nuclear export;0.000354162895525243!GO:0003702;RNA polymerase II transcription factor activity;0.000376053244202079!GO:0005769;early endosome;0.000379581149808632!GO:0005885;Arp2/3 protein complex;0.000417244255301091!GO:0030658;transport vesicle membrane;0.000431609295870222!GO:0006281;DNA repair;0.000438553852966329!GO:0003729;mRNA binding;0.000441235384070526!GO:0004576;oligosaccharyl transferase activity;0.000444559481090495!GO:0016859;cis-trans isomerase activity;0.000445659568080768!GO:0006351;transcription, DNA-dependent;0.000451625752114698!GO:0043566;structure-specific DNA binding;0.000451625752114698!GO:0008250;oligosaccharyl transferase complex;0.000451625752114698!GO:0032774;RNA biosynthetic process;0.000467921139126699!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000479822770392111!GO:0003697;single-stranded DNA binding;0.000484485397569593!GO:0043068;positive regulation of programmed cell death;0.000486764790510352!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000500991246029972!GO:0007050;cell cycle arrest;0.000524750748763128!GO:0000245;spliceosome assembly;0.000549006364832928!GO:0000151;ubiquitin ligase complex;0.000561760579735011!GO:0044427;chromosomal part;0.000565833857595613!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000584041553600968!GO:0003724;RNA helicase activity;0.000584041553600968!GO:0000314;organellar small ribosomal subunit;0.000621832852207258!GO:0005763;mitochondrial small ribosomal subunit;0.000621832852207258!GO:0005791;rough endoplasmic reticulum;0.000624446677610036!GO:0001558;regulation of cell growth;0.000681347514706519!GO:0031326;regulation of cellular biosynthetic process;0.000761342337981036!GO:0016049;cell growth;0.000763989293343526!GO:0030176;integral to endoplasmic reticulum membrane;0.000812181953578054!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000817381434863074!GO:0000059;protein import into nucleus, docking;0.000837444659436069!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000838825561348593!GO:0016197;endosome transport;0.000842173114661403!GO:0035258;steroid hormone receptor binding;0.000842173114661403!GO:0046983;protein dimerization activity;0.000857310243593632!GO:0030031;cell projection biogenesis;0.000878311253195211!GO:0009889;regulation of biosynthetic process;0.000931132213070835!GO:0051325;interphase;0.000955953972068943!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000989674074265661!GO:0016853;isomerase activity;0.00108015401992488!GO:0050790;regulation of catalytic activity;0.00108562172278208!GO:0030663;COPI coated vesicle membrane;0.00113112612479791!GO:0030126;COPI vesicle coat;0.00113112612479791!GO:0043681;protein import into mitochondrion;0.00120056302928772!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00120056302928772!GO:0030518;steroid hormone receptor signaling pathway;0.00121936147707342!GO:0030119;AP-type membrane coat adaptor complex;0.00123849823442546!GO:0051329;interphase of mitotic cell cycle;0.00130400775331241!GO:0045449;regulation of transcription;0.00132106390095612!GO:0030132;clathrin coat of coated pit;0.00148903872903984!GO:0030133;transport vesicle;0.00150187603522964!GO:0006626;protein targeting to mitochondrion;0.00152492337559711!GO:0048500;signal recognition particle;0.00163974830042049!GO:0022403;cell cycle phase;0.0016834948619745!GO:0030660;Golgi-associated vesicle membrane;0.00170220684532607!GO:0030521;androgen receptor signaling pathway;0.00176523775753013!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00178066786493297!GO:0043488;regulation of mRNA stability;0.00179189113078192!GO:0043487;regulation of RNA stability;0.00179189113078192!GO:0005048;signal sequence binding;0.00180368308089948!GO:0007006;mitochondrial membrane organization and biogenesis;0.00180637457611821!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00181262206340539!GO:0051920;peroxiredoxin activity;0.00183259714491074!GO:0051338;regulation of transferase activity;0.00185838359070818!GO:0018196;peptidyl-asparagine modification;0.00197875354705735!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00197875354705735!GO:0030125;clathrin vesicle coat;0.0020285282602679!GO:0030665;clathrin coated vesicle membrane;0.0020285282602679!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00203906292835453!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00203906292835453!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00203906292835453!GO:0016491;oxidoreductase activity;0.00216798720087079!GO:0008637;apoptotic mitochondrial changes;0.00217282038229112!GO:0030131;clathrin adaptor complex;0.00220556744062902!GO:0051098;regulation of binding;0.00232452564980228!GO:0009966;regulation of signal transduction;0.00237724231589919!GO:0004674;protein serine/threonine kinase activity;0.00266831707388352!GO:0006917;induction of apoptosis;0.00284641982553288!GO:0006839;mitochondrial transport;0.0028516373803445!GO:0044433;cytoplasmic vesicle part;0.00299649006870026!GO:0043549;regulation of kinase activity;0.00309941739387751!GO:0012506;vesicle membrane;0.00323936573000009!GO:0006402;mRNA catabolic process;0.00329083664538342!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00331381477037057!GO:0031072;heat shock protein binding;0.00333719983017862!GO:0016787;hydrolase activity;0.00341205659075215!GO:0006897;endocytosis;0.00343819934723385!GO:0010324;membrane invagination;0.00343819934723385!GO:0030659;cytoplasmic vesicle membrane;0.00344566318856089!GO:0015630;microtubule cytoskeleton;0.00348858962972024!GO:0006334;nucleosome assembly;0.00354134663363683!GO:0005856;cytoskeleton;0.00363352151584152!GO:0030137;COPI-coated vesicle;0.00367563201958183!GO:0008312;7S RNA binding;0.00370909087114831!GO:0016779;nucleotidyltransferase activity;0.00374435384424499!GO:0046474;glycerophospholipid biosynthetic process;0.00381725747081503!GO:0051789;response to protein stimulus;0.00386459018544631!GO:0006986;response to unfolded protein;0.00386459018544631!GO:0003779;actin binding;0.00390014701387941!GO:0008632;apoptotic program;0.00393449921974978!GO:0012502;induction of programmed cell death;0.00396846648915039!GO:0051252;regulation of RNA metabolic process;0.00396876044854954!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00397905418541656!GO:0016126;sterol biosynthetic process;0.00419955356157573!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00436310210399338!GO:0045047;protein targeting to ER;0.00436310210399338!GO:0031497;chromatin assembly;0.00439301589632943!GO:0051101;regulation of DNA binding;0.00453833441412022!GO:0000087;M phase of mitotic cell cycle;0.00459346805317752!GO:0006401;RNA catabolic process;0.00463905421839665!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00471604290211975!GO:0016251;general RNA polymerase II transcription factor activity;0.0047450215159336!GO:0030041;actin filament polymerization;0.00487139653022674!GO:0008610;lipid biosynthetic process;0.00491376343154122!GO:0005774;vacuolar membrane;0.00498261589347917!GO:0045045;secretory pathway;0.00511102623949248!GO:0033673;negative regulation of kinase activity;0.00527887086588624!GO:0006469;negative regulation of protein kinase activity;0.00527887086588624!GO:0046489;phosphoinositide biosynthetic process;0.0053171450607163!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00551721891932783!GO:0015399;primary active transmembrane transporter activity;0.00551721891932783!GO:0043022;ribosome binding;0.00561702238281351!GO:0030833;regulation of actin filament polymerization;0.0056385157332336!GO:0007067;mitosis;0.00569509083792752!GO:0030522;intracellular receptor-mediated signaling pathway;0.00589974963227271!GO:0008139;nuclear localization sequence binding;0.00605353132024236!GO:0045859;regulation of protein kinase activity;0.00608473585945664!GO:0006891;intra-Golgi vesicle-mediated transport;0.00664222358342196!GO:0015631;tubulin binding;0.0066680160198358!GO:0008186;RNA-dependent ATPase activity;0.0066821016262385!GO:0006355;regulation of transcription, DNA-dependent;0.00712375049810338!GO:0040008;regulation of growth;0.00726836062923512!GO:0030057;desmosome;0.00727032481119126!GO:0019904;protein domain specific binding;0.00732196641229693!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00734887328995908!GO:0008180;signalosome;0.00734887328995908!GO:0006414;translational elongation;0.00752720676909819!GO:0030503;regulation of cell redox homeostasis;0.00793156969314688!GO:0006260;DNA replication;0.00831693757086854!GO:0003690;double-stranded DNA binding;0.00832728761495364!GO:0030880;RNA polymerase complex;0.00874900770080338!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00874900770080338!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00874900770080338!GO:0000082;G1/S transition of mitotic cell cycle;0.00887269104349965!GO:0015980;energy derivation by oxidation of organic compounds;0.00893349652256476!GO:0016363;nuclear matrix;0.00907507808373595!GO:0017166;vinculin binding;0.00908129021107538!GO:0001836;release of cytochrome c from mitochondria;0.00927686011032237!GO:0008154;actin polymerization and/or depolymerization;0.00928800736899165!GO:0000049;tRNA binding;0.00968785318165747!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00986064153235088!GO:0005813;centrosome;0.00990846219499923!GO:0051087;chaperone binding;0.00994966792482817!GO:0006352;transcription initiation;0.00994966792482817!GO:0030027;lamellipodium;0.00994966792482817!GO:0032940;secretion by cell;0.00994966792482817!GO:0006595;polyamine metabolic process;0.00995057281680049!GO:0030384;phosphoinositide metabolic process;0.0101691116934109!GO:0006650;glycerophospholipid metabolic process;0.0103759613222599!GO:0050681;androgen receptor binding;0.010413062882103!GO:0015992;proton transport;0.0104602453153122!GO:0006818;hydrogen transport;0.0107672521473644!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0108440672034943!GO:0022890;inorganic cation transmembrane transporter activity;0.010874356438939!GO:0006354;RNA elongation;0.010955936686982!GO:0016272;prefoldin complex;0.0111223520291655!GO:0030134;ER to Golgi transport vesicle;0.0114887395923131!GO:0016311;dephosphorylation;0.0115016539242574!GO:0031902;late endosome membrane;0.0118022148653546!GO:0006979;response to oxidative stress;0.0118450394535307!GO:0007265;Ras protein signal transduction;0.0118506607179064!GO:0030127;COPII vesicle coat;0.0122438019478655!GO:0012507;ER to Golgi transport vesicle membrane;0.0122438019478655!GO:0031529;ruffle organization and biogenesis;0.012357804916308!GO:0051348;negative regulation of transferase activity;0.0124747334836434!GO:0000902;cell morphogenesis;0.0125722218823866!GO:0032989;cellular structure morphogenesis;0.0125722218823866!GO:0051301;cell division;0.0126428383095577!GO:0046822;regulation of nucleocytoplasmic transport;0.0128644150588337!GO:0016791;phosphoric monoester hydrolase activity;0.0130391569304013!GO:0048146;positive regulation of fibroblast proliferation;0.0131104322243671!GO:0051235;maintenance of localization;0.0133881940874588!GO:0044437;vacuolar part;0.0140350915429947!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0146634430343196!GO:0000428;DNA-directed RNA polymerase complex;0.0146634430343196!GO:0006950;response to stress;0.0147484672205828!GO:0048144;fibroblast proliferation;0.015151852296923!GO:0048145;regulation of fibroblast proliferation;0.015151852296923!GO:0030433;ER-associated protein catabolic process;0.0151896256599632!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0151896256599632!GO:0004004;ATP-dependent RNA helicase activity;0.0157337261614073!GO:0004721;phosphoprotein phosphatase activity;0.0159121855101903!GO:0005159;insulin-like growth factor receptor binding;0.0162853389065388!GO:0003899;DNA-directed RNA polymerase activity;0.0163981410277607!GO:0006091;generation of precursor metabolites and energy;0.0166433107424319!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0171100850254025!GO:0005149;interleukin-1 receptor binding;0.0181940568113086!GO:0006611;protein export from nucleus;0.0182439695205216!GO:0051270;regulation of cell motility;0.0186059357139206!GO:0048487;beta-tubulin binding;0.0191382483569436!GO:0035035;histone acetyltransferase binding;0.0192092006372013!GO:0006405;RNA export from nucleus;0.019498449306246!GO:0000339;RNA cap binding;0.0198181570747754!GO:0008234;cysteine-type peptidase activity;0.0198181570747754!GO:0015629;actin cytoskeleton;0.020072082658506!GO:0030032;lamellipodium biogenesis;0.020072082658506!GO:0005765;lysosomal membrane;0.020886732606887!GO:0043433;negative regulation of transcription factor activity;0.020886732606887!GO:0006338;chromatin remodeling;0.0209541062648256!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0209541062648256!GO:0010257;NADH dehydrogenase complex assembly;0.0209541062648256!GO:0033108;mitochondrial respiratory chain complex assembly;0.0209541062648256!GO:0005832;chaperonin-containing T-complex;0.0213013437719264!GO:0006695;cholesterol biosynthetic process;0.0213838539772915!GO:0046467;membrane lipid biosynthetic process;0.0216251350094706!GO:0004850;uridine phosphorylase activity;0.0223220352555844!GO:0040029;regulation of gene expression, epigenetic;0.0234620804656236!GO:0030218;erythrocyte differentiation;0.0239281429169737!GO:0005684;U2-dependent spliceosome;0.0241758768166161!GO:0045792;negative regulation of cell size;0.0241758768166161!GO:0016485;protein processing;0.0242256069089985!GO:0008047;enzyme activator activity;0.0242256069089985!GO:0016584;nucleosome positioning;0.024852688156705!GO:0046483;heterocycle metabolic process;0.0252060423809462!GO:0045334;clathrin-coated endocytic vesicle;0.0252413969085576!GO:0008629;induction of apoptosis by intracellular signals;0.0252413969085576!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0252413969085576!GO:0033043;regulation of organelle organization and biogenesis;0.0252413969085576!GO:0004680;casein kinase activity;0.025714967961158!GO:0045815;positive regulation of gene expression, epigenetic;0.0257558830539694!GO:0003711;transcription elongation regulator activity;0.0259383628010282!GO:0008287;protein serine/threonine phosphatase complex;0.0264684563401447!GO:0043621;protein self-association;0.0272711614093863!GO:0008536;Ran GTPase binding;0.0278059603173207!GO:0008286;insulin receptor signaling pathway;0.0283874937795812!GO:0001666;response to hypoxia;0.0285462943755165!GO:0000159;protein phosphatase type 2A complex;0.0286311676341584!GO:0030308;negative regulation of cell growth;0.0289225021212207!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0291266438896204!GO:0003746;translation elongation factor activity;0.0291714910101307!GO:0006693;prostaglandin metabolic process;0.0292599022499099!GO:0006692;prostanoid metabolic process;0.0292599022499099!GO:0040011;locomotion;0.0293783846342624!GO:0045646;regulation of erythrocyte differentiation;0.0294535648268449!GO:0006383;transcription from RNA polymerase III promoter;0.0299091163633659!GO:0030832;regulation of actin filament length;0.0301419009101955!GO:0032535;regulation of cellular component size;0.0308663693006109!GO:0016301;kinase activity;0.0312189031498491!GO:0005862;muscle thin filament tropomyosin;0.031659982384569!GO:0006509;membrane protein ectodomain proteolysis;0.0317711878200782!GO:0033619;membrane protein proteolysis;0.0317711878200782!GO:0046966;thyroid hormone receptor binding;0.0322541496306313!GO:0005586;collagen type III;0.0324053355727564!GO:0044452;nucleolar part;0.0324812316629599!GO:0005869;dynactin complex;0.0327575432019449!GO:0045926;negative regulation of growth;0.0334154099109641!GO:0031625;ubiquitin protein ligase binding;0.0338689321876024!GO:0051287;NAD binding;0.034551765354052!GO:0005815;microtubule organizing center;0.034551765354052!GO:0000118;histone deacetylase complex;0.0347832163368455!GO:0051674;localization of cell;0.0351685348754683!GO:0006928;cell motility;0.0351685348754683!GO:0006607;NLS-bearing substrate import into nucleus;0.0352210839808073!GO:0005938;cell cortex;0.0352612750181845!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0353781125923507!GO:0005200;structural constituent of cytoskeleton;0.035608931277703!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0360133868582957!GO:0040012;regulation of locomotion;0.0361045435003046!GO:0000786;nucleosome;0.0363222551409124!GO:0000096;sulfur amino acid metabolic process;0.0365151982195847!GO:0006984;ER-nuclear signaling pathway;0.0366214406971055!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0367154365063344!GO:0009165;nucleotide biosynthetic process;0.0369879887089444!GO:0030100;regulation of endocytosis;0.0374770639153328!GO:0006506;GPI anchor biosynthetic process;0.0379836005227975!GO:0005912;adherens junction;0.0381825736286276!GO:0005637;nuclear inner membrane;0.0381825736286276!GO:0043492;ATPase activity, coupled to movement of substances;0.0385444332127768!GO:0008426;protein kinase C inhibitor activity;0.0388572430068093!GO:0008601;protein phosphatase type 2A regulator activity;0.0390770285084997!GO:0055092;sterol homeostasis;0.0391310958155616!GO:0042632;cholesterol homeostasis;0.0391310958155616!GO:0008538;proteasome activator activity;0.039585312626856!GO:0050678;regulation of epithelial cell proliferation;0.0396597302713106!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0407390829158516!GO:0004681;casein kinase I activity;0.0408675120422623!GO:0003682;chromatin binding;0.0412077533668337!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0417258238352153!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0422067039076148!GO:0006892;post-Golgi vesicle-mediated transport;0.0427223268276665!GO:0006749;glutathione metabolic process;0.0427223268276665!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.042766945726397!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0436269646575597!GO:0012510;trans-Golgi network transport vesicle membrane;0.0436269646575597!GO:0043154;negative regulation of caspase activity;0.0440368799616247!GO:0051090;regulation of transcription factor activity;0.0444008457592152!GO:0008097;5S rRNA binding;0.0464256032083163!GO:0051881;regulation of mitochondrial membrane potential;0.0469845949504106!GO:0050839;cell adhesion molecule binding;0.0474734834815237!GO:0009116;nucleoside metabolic process;0.0484889325478746!GO:0016407;acetyltransferase activity;0.049216800725055!GO:0051336;regulation of hydrolase activity;0.0498050817382724!GO:0045185;maintenance of protein localization;0.0498509707878192!GO:0006518;peptide metabolic process;0.0499261844053654 | |||
|sample_id=12227 | |sample_id=12227 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=nasal cavity | |sample_tissue=nasal cavity | ||
|top_motifs=TBX4,5:2.75427865953;TP53:1.83606691371;VSX1,2:1.75070472004;NANOG:1.67051866558;ZEB1:1.62930970776;NKX2-3_NKX2-5:1.5907719609;GLI1..3:1.54359176068;NKX2-1,4:1.50741515538;SNAI1..3:1.46825198455;FOX{I1,J2}:1.36488383099;MED-1{core}:1.35434991284;ADNP_IRX_SIX_ZHX:1.34152415567;POU6F1:1.32602817871;TBP:1.23965140817;POU5F1:1.20835857704;HIF1A:1.19032849801;SMAD1..7,9:1.18914055028;POU1F1:1.14586392121;TFAP2{A,C}:1.09691993679;MYOD1:1.00551796878;ZNF148:0.983211289333;ZNF384:0.978656567607;PPARG:0.949150137277;PAX4:0.928645906886;MAZ:0.921441366852;ALX1:0.893393954409;PDX1:0.877237388483;CRX:0.819670204532;FOXQ1:0.792194469222;MTF1:0.790246312937;XCPE1{core}:0.784190275367;EGR1..3:0.773973358654;HOX{A5,B5}:0.76743615492;bHLH_family:0.721922855707;PAX8:0.718315836643;SP1:0.71502737072;AHR_ARNT_ARNT2:0.713342027884;TFCP2:0.706443316887;NFIL3:0.704104220983;MZF1:0.699190726476;FOS_FOS{B,L1}_JUN{B,D}:0.693375175399;NFE2:0.692704605275;FOSL2:0.66785448389;TEAD1:0.661712402;BACH2:0.654509645572;DBP:0.649006175381;HLF:0.647744628247;CEBPA,B_DDIT3:0.645704306565;EP300:0.623619189793;HOX{A6,A7,B6,B7}:0.578822028213;FOXL1:0.568780512096;TFDP1:0.553238454079;ZBTB6:0.536233072483;FOX{F1,F2,J1}:0.530935974423;ATF5_CREB3:0.524405984352;LMO2:0.5151352104;FOXM1:0.506906157703;ZNF423:0.506557701552;SOX17:0.496986423178;GZF1:0.491237652713;CDC5L:0.481183752746;SPZ1:0.459197341625;GTF2I:0.446721353168;POU2F1..3:0.444068670645;GTF2A1,2:0.436040303958;ZNF238:0.432533463248;NR5A1,2:0.430683844012;JUN:0.419087072809;HMX1:0.41662229736;NHLH1,2:0.400669524295;TLX1..3_NFIC{dimer}:0.400229165403;LHX3,4:0.391133487218;HOX{A4,D4}:0.390855270511;RFX2..5_RFXANK_RFXAP:0.388010775156;CDX1,2,4:0.380805778186;ZFP161:0.372897292872;MYFfamily:0.337258188111;ATF4:0.332594632443;PRRX1,2:0.331193387966;ATF2:0.324656225714;TAL1_TCF{3,4,12}:0.323941419413;NR6A1:0.316472276912;TFAP2B:0.306244029853;HAND1,2:0.2945177946;REST:0.292663022448;GFI1B:0.28020928876;RBPJ:0.279542391802;RREB1:0.26910890284;GATA6:0.257174989158;SOX2:0.253927791624;NKX6-1,2:0.252782680534;NFKB1_REL_RELA:0.234999902728;RUNX1..3:0.231262772278;PRDM1:0.229031485077;MTE{core}:0.224443698368;BPTF:0.221576715046;STAT5{A,B}:0.218022358238;MAFB:0.208491741595;TLX2:0.203353627091;PAX5:0.195260943122;TGIF1:0.194217744072;MYBL2:0.186620739586;NFE2L2:0.173457620971;RXR{A,B,G}:0.158084125425;OCT4_SOX2{dimer}:0.149810291275;ZIC1..3:0.143033801686;NANOG{mouse}:0.13638701598;MEF2{A,B,C,D}:0.134464990301;POU3F1..4:0.13404845026;PAX1,9:0.131470410969;T:0.126646924733;NKX3-1:0.12428527514;IRF7:0.0981854896779;PAX2:0.0754001348301;SRF:0.0669922274021;CUX2:0.0662105429969;ONECUT1,2:0.0643685896327;RORA:0.0607649412097;NKX3-2:0.0527598210032;AR:0.0471511283649;SPI1:0.0342926879523;YY1:0.0313515117215;UFEwm:0.0258955837732;BREu{core}:0.0151200444574;FOXN1:0.0116823310737;GCM1,2:0.00516279428647;SPIB:0.000623311787161;ETS1,2:-0.0114759661528;PAX3,7:-0.026889216618;PITX1..3:-0.0406972765052;ESR1:-0.0501528673852;LEF1_TCF7_TCF7L1,2:-0.0687120987694;NKX2-2,8:-0.0786044699846;DMAP1_NCOR{1,2}_SMARC:-0.0997968759866;PATZ1:-0.100660922502;IKZF1:-0.101073120311;FOXP3:-0.122649676989;ALX4:-0.123502052111;ELF1,2,4:-0.137462017522;RFX1:-0.142221774254;HNF1A:-0.152587762105;GFI1:-0.154739217926;SREBF1,2:-0.200028684487;FOX{D1,D2}:-0.205748324143;NR3C1:-0.206921549839;RXRA_VDR{dimer}:-0.217364859897;TOPORS:-0.233854896254;HIC1:-0.257298739741;NR1H4:-0.269744024825;TFAP4:-0.273274820724;HBP1_HMGB_SSRP1_UBTF:-0.295627838033;ATF6:-0.297110244985;NFIX:-0.332549120789;AIRE:-0.334400254954;FOXO1,3,4:-0.338911882652;CREB1:-0.339329845536;SOX5:-0.348899623878;TEF:-0.348982448726;HSF1,2:-0.351095466567;HNF4A_NR2F1,2:-0.352392189312;NFY{A,B,C}:-0.364113634466;ZBTB16:-0.365002991865;FOXA2:-0.374403174586;EBF1:-0.396575268581;PBX1:-0.399173626973;NFE2L1:-0.420240167576;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.453598985679;STAT2,4,6:-0.462879629938;KLF4:-0.479418299929;E2F1..5:-0.530360947216;STAT1,3:-0.570263007283;ELK1,4_GABP{A,B1}:-0.58746949733;SOX{8,9,10}:-0.588841371024;ZNF143:-0.593454769186;IRF1,2:-0.630655664556;IKZF2:-0.673069887651;NFATC1..3:-0.719301615148;ARID5B:-0.734274595243;HMGA1,2:-0.742063367901;NRF1:-0.80258557387;GATA4:-0.809252649117;HES1:-0.810235349986;MYB:-0.812562721606;XBP1:-0.836800560105;FOXP1:-0.944953873669;EVI1:-0.951924029548;EN1,2:-0.952250991361;ESRRA:-0.969507337173;PAX6:-1.05101951733;FOXD3:-1.1072530737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15385172626;HOXA9_MEIS1:-1.21512216089 | |top_motifs=TBX4,5:2.75427865953;TP53:1.83606691371;VSX1,2:1.75070472004;NANOG:1.67051866558;ZEB1:1.62930970776;NKX2-3_NKX2-5:1.5907719609;GLI1..3:1.54359176068;NKX2-1,4:1.50741515538;SNAI1..3:1.46825198455;FOX{I1,J2}:1.36488383099;MED-1{core}:1.35434991284;ADNP_IRX_SIX_ZHX:1.34152415567;POU6F1:1.32602817871;TBP:1.23965140817;POU5F1:1.20835857704;HIF1A:1.19032849801;SMAD1..7,9:1.18914055028;POU1F1:1.14586392121;TFAP2{A,C}:1.09691993679;MYOD1:1.00551796878;ZNF148:0.983211289333;ZNF384:0.978656567607;PPARG:0.949150137277;PAX4:0.928645906886;MAZ:0.921441366852;ALX1:0.893393954409;PDX1:0.877237388483;CRX:0.819670204532;FOXQ1:0.792194469222;MTF1:0.790246312937;XCPE1{core}:0.784190275367;EGR1..3:0.773973358654;HOX{A5,B5}:0.76743615492;bHLH_family:0.721922855707;PAX8:0.718315836643;SP1:0.71502737072;AHR_ARNT_ARNT2:0.713342027884;TFCP2:0.706443316887;NFIL3:0.704104220983;MZF1:0.699190726476;FOS_FOS{B,L1}_JUN{B,D}:0.693375175399;NFE2:0.692704605275;FOSL2:0.66785448389;TEAD1:0.661712402;BACH2:0.654509645572;DBP:0.649006175381;HLF:0.647744628247;CEBPA,B_DDIT3:0.645704306565;EP300:0.623619189793;HOX{A6,A7,B6,B7}:0.578822028213;FOXL1:0.568780512096;TFDP1:0.553238454079;ZBTB6:0.536233072483;FOX{F1,F2,J1}:0.530935974423;ATF5_CREB3:0.524405984352;LMO2:0.5151352104;FOXM1:0.506906157703;ZNF423:0.506557701552;SOX17:0.496986423178;GZF1:0.491237652713;CDC5L:0.481183752746;SPZ1:0.459197341625;GTF2I:0.446721353168;POU2F1..3:0.444068670645;GTF2A1,2:0.436040303958;ZNF238:0.432533463248;NR5A1,2:0.430683844012;JUN:0.419087072809;HMX1:0.41662229736;NHLH1,2:0.400669524295;TLX1..3_NFIC{dimer}:0.400229165403;LHX3,4:0.391133487218;HOX{A4,D4}:0.390855270511;RFX2..5_RFXANK_RFXAP:0.388010775156;CDX1,2,4:0.380805778186;ZFP161:0.372897292872;MYFfamily:0.337258188111;ATF4:0.332594632443;PRRX1,2:0.331193387966;ATF2:0.324656225714;TAL1_TCF{3,4,12}:0.323941419413;NR6A1:0.316472276912;TFAP2B:0.306244029853;HAND1,2:0.2945177946;REST:0.292663022448;GFI1B:0.28020928876;RBPJ:0.279542391802;RREB1:0.26910890284;GATA6:0.257174989158;SOX2:0.253927791624;NKX6-1,2:0.252782680534;NFKB1_REL_RELA:0.234999902728;RUNX1..3:0.231262772278;PRDM1:0.229031485077;MTE{core}:0.224443698368;BPTF:0.221576715046;STAT5{A,B}:0.218022358238;MAFB:0.208491741595;TLX2:0.203353627091;PAX5:0.195260943122;TGIF1:0.194217744072;MYBL2:0.186620739586;NFE2L2:0.173457620971;RXR{A,B,G}:0.158084125425;OCT4_SOX2{dimer}:0.149810291275;ZIC1..3:0.143033801686;NANOG{mouse}:0.13638701598;MEF2{A,B,C,D}:0.134464990301;POU3F1..4:0.13404845026;PAX1,9:0.131470410969;T:0.126646924733;NKX3-1:0.12428527514;IRF7:0.0981854896779;PAX2:0.0754001348301;SRF:0.0669922274021;CUX2:0.0662105429969;ONECUT1,2:0.0643685896327;RORA:0.0607649412097;NKX3-2:0.0527598210032;AR:0.0471511283649;SPI1:0.0342926879523;YY1:0.0313515117215;UFEwm:0.0258955837732;BREu{core}:0.0151200444574;FOXN1:0.0116823310737;GCM1,2:0.00516279428647;SPIB:0.000623311787161;ETS1,2:-0.0114759661528;PAX3,7:-0.026889216618;PITX1..3:-0.0406972765052;ESR1:-0.0501528673852;LEF1_TCF7_TCF7L1,2:-0.0687120987694;NKX2-2,8:-0.0786044699846;DMAP1_NCOR{1,2}_SMARC:-0.0997968759866;PATZ1:-0.100660922502;IKZF1:-0.101073120311;FOXP3:-0.122649676989;ALX4:-0.123502052111;ELF1,2,4:-0.137462017522;RFX1:-0.142221774254;HNF1A:-0.152587762105;GFI1:-0.154739217926;SREBF1,2:-0.200028684487;FOX{D1,D2}:-0.205748324143;NR3C1:-0.206921549839;RXRA_VDR{dimer}:-0.217364859897;TOPORS:-0.233854896254;HIC1:-0.257298739741;NR1H4:-0.269744024825;TFAP4:-0.273274820724;HBP1_HMGB_SSRP1_UBTF:-0.295627838033;ATF6:-0.297110244985;NFIX:-0.332549120789;AIRE:-0.334400254954;FOXO1,3,4:-0.338911882652;CREB1:-0.339329845536;SOX5:-0.348899623878;TEF:-0.348982448726;HSF1,2:-0.351095466567;HNF4A_NR2F1,2:-0.352392189312;NFY{A,B,C}:-0.364113634466;ZBTB16:-0.365002991865;FOXA2:-0.374403174586;EBF1:-0.396575268581;PBX1:-0.399173626973;NFE2L1:-0.420240167576;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.453598985679;STAT2,4,6:-0.462879629938;KLF4:-0.479418299929;E2F1..5:-0.530360947216;STAT1,3:-0.570263007283;ELK1,4_GABP{A,B1}:-0.58746949733;SOX{8,9,10}:-0.588841371024;ZNF143:-0.593454769186;IRF1,2:-0.630655664556;IKZF2:-0.673069887651;NFATC1..3:-0.719301615148;ARID5B:-0.734274595243;HMGA1,2:-0.742063367901;NRF1:-0.80258557387;GATA4:-0.809252649117;HES1:-0.810235349986;MYB:-0.812562721606;XBP1:-0.836800560105;FOXP1:-0.944953873669;EVI1:-0.951924029548;EN1,2:-0.952250991361;ESRRA:-0.969507337173;PAX6:-1.05101951733;FOXD3:-1.1072530737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15385172626;HOXA9_MEIS1:-1.21512216089 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12227-129F4;search_select_hide=table117:FF:12227-129F4 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | nasal epithelial cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12574 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12574
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12574
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.47 |
| 10 | 10 | 0.0289 |
| 100 | 100 | 0.0881 |
| 101 | 101 | 0.682 |
| 102 | 102 | 0.464 |
| 103 | 103 | 0.941 |
| 104 | 104 | 0.631 |
| 105 | 105 | 0.186 |
| 106 | 106 | 0.0197 |
| 107 | 107 | 0.00188 |
| 108 | 108 | 0.15 |
| 109 | 109 | 0.191 |
| 11 | 11 | 0.752 |
| 110 | 110 | 0.816 |
| 111 | 111 | 0.303 |
| 112 | 112 | 0.737 |
| 113 | 113 | 0.186 |
| 114 | 114 | 0.513 |
| 115 | 115 | 0.624 |
| 116 | 116 | 0.266 |
| 117 | 117 | 0.0204 |
| 118 | 118 | 0.294 |
| 119 | 119 | 0.908 |
| 12 | 12 | 0.813 |
| 120 | 120 | 0.205 |
| 121 | 121 | 0.39 |
| 122 | 122 | 0.0932 |
| 123 | 123 | 0.126 |
| 124 | 124 | 0.0449 |
| 125 | 125 | 0.645 |
| 126 | 126 | 0.488 |
| 127 | 127 | 0.0327 |
| 128 | 128 | 0.0119 |
| 129 | 129 | 0.692 |
| 13 | 13 | 0.749 |
| 130 | 130 | 0.251 |
| 131 | 131 | 0.399 |
| 132 | 132 | 0.934 |
| 133 | 133 | 0.496 |
| 134 | 134 | 0.638 |
| 135 | 135 | 0.0825 |
| 136 | 136 | 0.29 |
| 137 | 137 | 0.156 |
| 138 | 138 | 0.285 |
| 139 | 139 | 0.727 |
| 14 | 14 | 0.326 |
| 140 | 140 | 0.96 |
| 141 | 141 | 0.126 |
| 142 | 142 | 0.0231 |
| 143 | 143 | 0.564 |
| 144 | 144 | 0.258 |
| 145 | 145 | 0.802 |
| 146 | 146 | 0.00148 |
| 147 | 147 | 0.697 |
| 148 | 148 | 0.658 |
| 149 | 149 | 0.519 |
| 15 | 15 | 0.832 |
| 150 | 150 | 0.373 |
| 151 | 151 | 0.505 |
| 152 | 152 | 0.0772 |
| 153 | 153 | 0.0396 |
| 154 | 154 | 0.752 |
| 155 | 155 | 0.773 |
| 156 | 156 | 0.94 |
| 157 | 157 | 0.5 |
| 158 | 158 | 0.649 |
| 159 | 159 | 0.324 |
| 16 | 16 | 0.315 |
| 160 | 160 | 0.35 |
| 161 | 161 | 0.911 |
| 162 | 162 | 0.977 |
| 163 | 163 | 0.213 |
| 164 | 164 | 0.172 |
| 165 | 165 | 0.699 |
| 166 | 166 | 0.827 |
| 167 | 167 | 0.272 |
| 168 | 168 | 0.0665 |
| 169 | 169 | 0.719 |
| 17 | 17 | 0.288 |
| 18 | 18 | 0.0418 |
| 19 | 19 | 0.394 |
| 2 | 2 | 0.0995 |
| 20 | 20 | 0.425 |
| 21 | 21 | 0.625 |
| 22 | 22 | 0.792 |
| 23 | 23 | 0.92 |
| 24 | 24 | 0.374 |
| 25 | 25 | 0.765 |
| 26 | 26 | 0.476 |
| 27 | 27 | 0.934 |
| 28 | 28 | 0.814 |
| 29 | 29 | 0.634 |
| 3 | 3 | 0.706 |
| 30 | 30 | 0.0429 |
| 31 | 31 | 0.312 |
| 32 | 32 | 0.787 |
| 33 | 33 | 0.593 |
| 34 | 34 | 0.722 |
| 35 | 35 | 0.299 |
| 36 | 36 | 0.0499 |
| 37 | 37 | 0.441 |
| 38 | 38 | 0.962 |
| 39 | 39 | 0.253 |
| 4 | 4 | 0.442 |
| 40 | 40 | 0.33 |
| 41 | 41 | 0.517 |
| 42 | 42 | 0.671 |
| 43 | 43 | 0.61 |
| 44 | 44 | 0.376 |
| 45 | 45 | 0.0809 |
| 46 | 46 | 0.984 |
| 47 | 47 | 0.407 |
| 48 | 48 | 0.714 |
| 49 | 49 | 0.735 |
| 5 | 5 | 0.61 |
| 50 | 50 | 0.907 |
| 51 | 51 | 0.87 |
| 52 | 52 | 0.0415 |
| 53 | 53 | 0.278 |
| 54 | 54 | 0.235 |
| 55 | 55 | 0.982 |
| 56 | 56 | 0.464 |
| 57 | 57 | 0.81 |
| 58 | 58 | 0.84 |
| 59 | 59 | 0.573 |
| 6 | 6 | 0.0327 |
| 60 | 60 | 0.124 |
| 61 | 61 | 0.926 |
| 62 | 62 | 0.364 |
| 63 | 63 | 0.868 |
| 64 | 64 | 0.527 |
| 65 | 65 | 0.584 |
| 66 | 66 | 0.382 |
| 67 | 67 | 0.952 |
| 68 | 68 | 0.184 |
| 69 | 69 | 0.248 |
| 7 | 7 | 0.996 |
| 70 | 70 | 0.604 |
| 71 | 71 | 0.0403 |
| 72 | 72 | 0.403 |
| 73 | 73 | 0.891 |
| 74 | 74 | 0.127 |
| 75 | 75 | 0.24 |
| 76 | 76 | 0.391 |
| 77 | 77 | 0.16 |
| 78 | 78 | 0.823 |
| 79 | 79 | 0.514 |
| 8 | 8 | 0.396 |
| 80 | 80 | 0.0175 |
| 81 | 81 | 0.193 |
| 82 | 82 | 0.235 |
| 83 | 83 | 0.545 |
| 84 | 84 | 0.353 |
| 85 | 85 | 0.132 |
| 86 | 86 | 0.612 |
| 87 | 87 | 0.946 |
| 88 | 88 | 0.572 |
| 89 | 89 | 0.533 |
| 9 | 9 | 0.952 |
| 90 | 90 | 0.741 |
| 91 | 91 | 0.444 |
| 92 | 92 | 0.454 |
| 93 | 93 | 0.764 |
| 94 | 94 | 0.589 |
| 95 | 95 | 0.0398 |
| 96 | 96 | 0.517 |
| 97 | 97 | 0.239 |
| 98 | 98 | 0.942 |
| 99 | 99 | 0.432 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12574
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0104976 (human nasal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
