FF:12233-129G1: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	mature adipocyte, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12560
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	NA
sex	female
age	64
cell type	adipocyte
cell line	NA
company	NA
collaboration	Peter Arner (Karolinska Institutet)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005507

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12560		CAGE		DRX008087		DRR008959

Accession ID Hg19

Library id		BAM		CTSS
CNhs12560		DRZ000384		DRZ001769

Accession ID Hg38

Library id		BAM		CTSS
CNhs12560		DRZ011734		DRZ013119

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.42
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.116
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.403
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0833
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.177
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.104
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.697
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.385
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.003
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0215
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.116
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.39
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0499
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.347
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0286
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.116
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.623
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.453
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	1.151
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.123
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12560

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.172
MA0003.1	MA0003.1	0.784
MA0004.1	MA0004.1	0.851
MA0006.1	MA0006.1	0.972
MA0007.1	MA0007.1	0.279
MA0009.1	MA0009.1	0.194
MA0014.1	MA0014.1	0.667
MA0017.1	MA0017.1	0.122
MA0018.2	MA0018.2	0.0645
MA0019.1	MA0019.1	0.17
MA0024.1	MA0024.1	0.00537
MA0025.1	MA0025.1	1.84862e-4
MA0027.1	MA0027.1	0.463
MA0028.1	MA0028.1	4.11359e-4
MA0029.1	MA0029.1	0.923
MA0030.1	MA0030.1	0.0107
MA0031.1	MA0031.1	6.93696e-4
MA0035.2	MA0035.2	0.734
MA0038.1	MA0038.1	0.292
MA0039.2	MA0039.2	0.264
MA0040.1	MA0040.1	0.109
MA0041.1	MA0041.1	0.00431
MA0042.1	MA0042.1	0.0655
MA0043.1	MA0043.1	3.43371e-5
MA0046.1	MA0046.1	0.672
MA0047.2	MA0047.2	0.0194
MA0048.1	MA0048.1	0.784
MA0050.1	MA0050.1	0.88
MA0051.1	MA0051.1	0.237
MA0052.1	MA0052.1	4.5795e-6
MA0055.1	MA0055.1	0.247
MA0057.1	MA0057.1	0.453
MA0058.1	MA0058.1	0.899
MA0059.1	MA0059.1	0.105
MA0060.1	MA0060.1	0.495
MA0061.1	MA0061.1	0.328
MA0062.2	MA0062.2	1.9699e-6
MA0065.2	MA0065.2	0.0944
MA0066.1	MA0066.1	0.0109
MA0067.1	MA0067.1	0.171
MA0068.1	MA0068.1	2.11274e-6
MA0069.1	MA0069.1	0.867
MA0070.1	MA0070.1	0.299
MA0071.1	MA0071.1	0.993
MA0072.1	MA0072.1	0.129
MA0073.1	MA0073.1	0.839
MA0074.1	MA0074.1	0.449
MA0076.1	MA0076.1	9.53883e-4
MA0077.1	MA0077.1	0.177
MA0078.1	MA0078.1	0.077
MA0079.2	MA0079.2	0.0665
MA0080.2	MA0080.2	0.133
MA0081.1	MA0081.1	0.391
MA0083.1	MA0083.1	0.101
MA0084.1	MA0084.1	0.968
MA0087.1	MA0087.1	0.831
MA0088.1	MA0088.1	0.201
MA0090.1	MA0090.1	0.00814
MA0091.1	MA0091.1	0.279
MA0092.1	MA0092.1	0.714
MA0093.1	MA0093.1	0.864
MA0099.2	MA0099.2	0.00308
MA0100.1	MA0100.1	0.688
MA0101.1	MA0101.1	7.38194e-6
MA0102.2	MA0102.2	0.0136
MA0103.1	MA0103.1	1.28113e-5
MA0104.2	MA0104.2	0.121
MA0105.1	MA0105.1	0.00784
MA0106.1	MA0106.1	0.159
MA0107.1	MA0107.1	3.25951e-7
MA0108.2	MA0108.2	5.26481e-11
MA0111.1	MA0111.1	0.154
MA0112.2	MA0112.2	0.0312
MA0113.1	MA0113.1	0.0304
MA0114.1	MA0114.1	0.00117
MA0115.1	MA0115.1	0.461
MA0116.1	MA0116.1	4.9006e-4
MA0117.1	MA0117.1	0.951
MA0119.1	MA0119.1	0.972
MA0122.1	MA0122.1	0.127
MA0124.1	MA0124.1	0.587
MA0125.1	MA0125.1	0.458
MA0131.1	MA0131.1	0.882
MA0135.1	MA0135.1	0.346
MA0136.1	MA0136.1	0.0777
MA0137.2	MA0137.2	2.11143e-12
MA0138.2	MA0138.2	0.973
MA0139.1	MA0139.1	0.0163
MA0140.1	MA0140.1	0.632
MA0141.1	MA0141.1	0.747
MA0142.1	MA0142.1	0.115
MA0143.1	MA0143.1	0.441
MA0144.1	MA0144.1	2.47953e-6
MA0145.1	MA0145.1	0.314
MA0146.1	MA0146.1	0.535
MA0147.1	MA0147.1	0.0431
MA0148.1	MA0148.1	0.0465
MA0149.1	MA0149.1	0.728
MA0150.1	MA0150.1	0.0961
MA0152.1	MA0152.1	0.101
MA0153.1	MA0153.1	0.129
MA0154.1	MA0154.1	0.494
MA0155.1	MA0155.1	0.797
MA0156.1	MA0156.1	0.0185
MA0157.1	MA0157.1	0.00564
MA0159.1	MA0159.1	0.461
MA0160.1	MA0160.1	0.169
MA0162.1	MA0162.1	0.481
MA0163.1	MA0163.1	2.90417e-9
MA0164.1	MA0164.1	0.91
MA0258.1	MA0258.1	0.00964
MA0259.1	MA0259.1	0.178

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12560

Novel motif	Logo	P-value
1	1	0.117
10	10	0.212
100	100	0.748
101	101	0.574
102	102	0.16
103	103	0.769
104	104	0.987
105	105	0.907
106	106	0.595
107	107	0.709
108	108	0.428
109	109	0.136
11	11	0.106
110	110	0.0913
111	111	0.0591
112	112	0.461
113	113	0.7
114	114	0.0166
115	115	0.738
116	116	0.107
117	117	0.00339
118	118	0.26
119	119	0.744
12	12	0.194
120	120	0.14
121	121	0.944
122	122	0.363
123	123	0.0202
124	124	0.371
125	125	0.142
126	126	0.733
127	127	0.161
128	128	0.937
129	129	0.59
13	13	0.652
130	130	0.281
131	131	0.385
132	132	0.458
133	133	0.172
134	134	0.499
135	135	0.649
136	136	0.399
137	137	0.765
138	138	0.117
139	139	0.823
14	14	0.851
140	140	4.61278e-4
141	141	0.416
142	142	0.93
143	143	0.0707
144	144	0.546
145	145	0.21
146	146	0.326
147	147	0.507
148	148	0.421
149	149	0.727
15	15	0.371
150	150	0.65
151	151	0.41
152	152	0.474
153	153	0.0391
154	154	0.232
155	155	0.171
156	156	0.452
157	157	0.519
158	158	0.517
159	159	0.207
16	16	0.166
160	160	0.394
161	161	0.313
162	162	0.63
163	163	0.986
164	164	0.239
165	165	0.429
166	166	0.894
167	167	0.576
168	168	0.985
169	169	0.408
17	17	0.54
18	18	0.202
19	19	0.776
2	2	0.892
20	20	0.844
21	21	0.212
22	22	0.696
23	23	0.349
24	24	0.615
25	25	0.739
26	26	0.0836
27	27	0.338
28	28	0.774
29	29	0.0302
3	3	0.18
30	30	0.49
31	31	0.809
32	32	2.81139e-4
33	33	0.942
34	34	0.766
35	35	0.17
36	36	0.305
37	37	0.447
38	38	0.663
39	39	0.0427
4	4	0.124
40	40	0.291
41	41	0.988
42	42	0.477
43	43	0.594
44	44	0.014
45	45	0.374
46	46	0.0449
47	47	0.0621
48	48	0.0599
49	49	0.116
5	5	0.218
50	50	0.822
51	51	0.594
52	52	0.272
53	53	0.805
54	54	0.849
55	55	0.176
56	56	0.274
57	57	0.211
58	58	0.67
59	59	0.325
6	6	0.506
60	60	0.502
61	61	0.13
62	62	0.414
63	63	0.626
64	64	0.0975
65	65	0.872
66	66	0.424
67	67	0.48
68	68	0.932
69	69	0.0018
7	7	0.554
70	70	0.0135
71	71	0.0683
72	72	0.47
73	73	0.749
74	74	0.613
75	75	0.0661
76	76	0.436
77	77	0.715
78	78	0.68
79	79	0.116
8	8	0.231
80	80	0.16
81	81	0.474
82	82	0.584
83	83	0.0256
84	84	0.734
85	85	0.92
86	86	0.534
87	87	0.38
88	88	0.581
89	89	0.427
9	9	0.403
90	90	0.968
91	91	0.853
92	92	0.733
93	93	0.475
94	94	0.214
95	95	0.159
96	96	0.598
97	97	0.308
98	98	0.33
99	99	0.494

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12560

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000266 human mature adipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000266 (human mature adipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005507
-|accession_numbers=CAGE;DRX008087;DRR008959;DRZ000384;DRZ001769
+|accession_numbers=CAGE;DRX008087;DRR008959;DRZ000384;DRZ001769;DRZ011734;DRZ013119
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.31!205.25!IRF8;;chr3:12330560..12330579,+!p1@PPARG!2.25!202.49!PPARG;;chr19:45971246..45971265,+!p1@FOSB!2.24!3001.88!FOSB;;chr7:73038839..73038862,-!p1@MLXIPL!2.21!162.67!MLXIPL;;chr19:33793430..33793447,-!p1@CEBPA!2.12!525.69!CEBPA;;chr9:110252035..110252057,-!p1@KLF4!1.96!1347.00!KLF4;;chr15:42749722..42749739,-!p2@ZFP106!1.90!138.16!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.81!90.07!ZBTB16;;chr14:75745523..75745537,+!p1@FOS!1.80!6876.23!FOS;;chr8:55370487..55370503,+!p1@SOX17!1.70!48.71!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.68!47.18!PPARG;;chr3:150126101..150126118,+!p6@TSC22D2!1.64!68.01!TSC22D2;;chr5:158526917..158526932,-!p1@EBF1!1.62!98.34!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.61!50.85!NFATC2;;chr6:19837592..19837621,+!p1@ID4!1.57!212.91!ID4;;chr9:1050331..1050363,+!p1@DMRT2!1.57!35.84!DMRT2;;chr10:63808574..63808584,+!p27@ARID5B!1.57!35.84!ARID5B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.84!ZBED1;;chr9:77112244..77112262,+!p1@RORB!1.55!38.60!RORB;;chr10:63809013..63809041,+!p3@ARID5B!1.52!172.78!ARID5B;;chr8:10588010..10588030,-!p1@SOX7!1.52!32.47!SOX7;;chr3:12392932..12392962,+!p8@PPARG!1.50!30.94!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.48!758.82!ATF3;;chr7:19157248..19157268,-!p1@TWIST1!1.48!78.42!TWIST1;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.80!ZNF385A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.71!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.30!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.39!29.10!KLF15;;chr11:113930401..113930422,+!p3@ZBTB16!1.38!22.98!ZBTB16;;chr13:41240717..41240735,-!p2@FOXO1!1.36!143.98!FOXO1;;chr17:40440481..40440550,+!p1@STAT5A!1.35!148.27!STAT5A;;chr1:61548225..61548299,+!p1@NFIA!1.33!259.47!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!1.33!45.65!NR1H3;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.85!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!1.32!25.12!SOX5;;chr17:53342311..53342400,+!p1@HLF!1.31!22.06!HLF;;chr15:90294062..90294079,-!p2@MESP1!1.31!19.30!MESP1;;chr3:187463179..187463201,-!p2@BCL6!1.30!76.28!BCL6;;chr18:77155922..77155939,+!p1@NFATC1!1.29!50.24!NFATC1;;chr19:12902289..12902307,+!p1@JUNB!1.28!3991.68!JUNB;;chr17:17726907..17726958,-!p2@SREBF1!1.28!109.98!SREBF1;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.50!PPARG;;chrX:66763856..66763896,+!p1@AR!1.28!26.04!AR;;chr21:39870339..39870443,-!p1@ERG!1.28!18.07!ERG;;chr10:45495946..45495976,+!p2@ZNF22!1.28!18.07!ZNF22;;chr1:59249707..59249727,-!p1@JUN!1.27!723.59!JUN;;chr11:113930291..113930339,+!p2@ZBTB16!1.27!28.80!ZBTB16;;chr5:137801160..137801176,+!p1@EGR1!1.25!1607.40!EGR1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.49!TWIST2;;chr7:73038867..73038878,-!p2@MLXIPL!1.25!16.85!MLXIPL;;chr13:41240737..41240787,-!p1@FOXO1!1.24!189.32!FOXO1;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr10:63809106..63809127,+!p1@ARID5B!1.22!206.17!ARID5B;;chr3:39195075..39195088,-!p1@CSRNP1!1.22!95.27!CSRNP1;;chr5:131826457..131826514,-!p1@IRF1!1.21!580.22!IRF1;;chr1:59249688..59249703,-!p3@JUN!1.21!89.76!JUN;;chr2:43454125..43454146,-!p2@ZFP36L2!1.21!15.32!ZFP36L2;;chr10:63809077..63809089,+!p5@ARID5B!1.20!32.17!ARID5B;;chrX:66763914..66763933,+!p3@AR!1.20!14.70!AR;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!379.87!TSC22D3;;chr20:39317868..39317884,-!p1@MAFB!1.19!168.49!MAFB;;chr7:19157043..19157088,-!p2@TWIST1!1.19!35.84!TWIST1;;chr8:48650715..48650735,-!p1@CEBPD!1.18!1757.20!CEBPD;;chr2:145271342..145271377,-!p5@ZEB2!1.18!14.09!ZEB2;;chr2:145274900..145274934,-!p4@ZEB2!1.16!82.41!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.16!13.48!PLEK;;chr14:21566731..21566836,-!p1@ZNF219!1.15!137.86!ZNF219;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.36!NCOA4;;chr8:128748470..128748487,+!p1@MYC!1.14!1401.53!MYC;;chr14:35873947..35873965,-!p1@NFKBIA!1.14!808.75!NFKBIA;;chr17:40540591..40540600,-!p3@STAT3!1.13!12.56!STAT3;;chr6:152128810..152128827,+!p2@ESR1!1.13!12.56!ESR1;;chr19:16435625..16435682,+!p1@KLF2!1.12!393.35!KLF2;;chr1:61548374..61548415,+!p4@NFIA!1.12!22.67!NFIA;;chr1:119530493..119530572,-!p1@TBX15!1.12!12.25!TBX15;;chr22:41763452..41763466,+!p2@TEF!1.12!12.25!TEF;;chr3:12393032..12393047,+!p15@PPARG!1.11!11.95!PPARG;;chr19:18392422..18392440,-!p1@JUND!1.10!1599.43!JUND;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.93!BHLHE41;;chr22:38598086..38598105,+!p1@MAFF!1.09!119.47!MAFF;;chr6:126240380..126240430,+!p2@NCOA7!1.08!29.10!NCOA7;;chr2:145277882..145277967,-!p3@ZEB2!1.08!18.99!ZEB2;;chr1:59249732..59249749,-!p2@JUN!1.07!129.58!JUN;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.72!HOXC9;;chr5:137804405..137804444,+!p3@EGR1!1.05!12.25!EGR1;;chr5:2751762..2751784,-!p1@IRX2!1.05!10.11!IRX2;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.11!HOXA3;;chr14:61116183..61116208,-!p1@SIX1!1.04!37.99!SIX1;;chr19:16435523..16435619,+!p2@KLF2!1.04!14.09!KLF2;;chr2:10091815..10091864,+!p1@GRHL1!1.04!13.17!GRHL1;;chr10:63808979..63808990,+!p8@ARID5B!1.04!11.03!ARID5B;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.79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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136
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@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:12233-129G1
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@@ Line 46: / Line 52: @@
 |library_id=CNhs12560
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+|microRNAs_nn=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12233
 |name=mature adipocyte, donor3
 |namespace=FANTOM5
@@ Line 53: / Line 63: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12233-129G1;search_select_hide=table117:FF:12233-129G1
 }}

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FF:12233-129G1: Difference between revisions

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Latest revision as of 18:35, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0