FF:12242-129H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004913 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008046;DRR008918;DRZ000343;DRZ001728;DRZ011693;DRZ013078 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000013,FF:0000212 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12242-129H1 | |id=FF:12242-129H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000212 | ||
|is_obsolete= | |||
|library_id=CNhs12563 | |||
|library_id_phase_based=2:CNhs12563 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12242 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12242 | |||
|name=Basophils, donor2 | |name=Basophils, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12563,LSID921,release011,COMPLETED | |profile_hcage=CNhs12563,LSID921,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number=3H100-93-5 | |rna_catalog_number=3H100-93-5 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=1.62792 | |rna_weight_ug=1.62792 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.88529883145155e-226!GO:0043227;membrane-bound organelle;7.55249964101255e-154!GO:0043231;intracellular membrane-bound organelle;1.3500861340913e-153!GO:0043226;organelle;2.5368990427666e-143!GO:0043229;intracellular organelle;1.15981660093018e-142!GO:0005737;cytoplasm;2.19312055984403e-123!GO:0044422;organelle part;6.01220671871363e-92!GO:0044446;intracellular organelle part;2.3023297879913e-90!GO:0043170;macromolecule metabolic process;9.41059721049662e-84!GO:0005634;nucleus;1.38784976805659e-81!GO:0044237;cellular metabolic process;2.2288897938552e-80!GO:0044238;primary metabolic process;2.3765435304496e-79!GO:0044444;cytoplasmic part;2.11241707755028e-78!GO:0032991;macromolecular complex;1.3063500413762e-77!GO:0005515;protein binding;8.12639891126964e-73!GO:0003723;RNA binding;1.20615532033316e-69!GO:0044428;nuclear part;2.97180612519244e-68!GO:0030529;ribonucleoprotein complex;6.09101199762284e-64!GO:0043283;biopolymer metabolic process;2.39146812864068e-55!GO:0043233;organelle lumen;1.04315617661488e-54!GO:0031974;membrane-enclosed lumen;1.04315617661488e-54!GO:0019538;protein metabolic process;4.79505880244998e-50!GO:0044267;cellular protein metabolic process;1.88512911579014e-47!GO:0044260;cellular macromolecule metabolic process;5.75010917267949e-47!GO:0010467;gene expression;6.32920490476503e-47!GO:0033036;macromolecule localization;3.46177579651744e-46!GO:0006412;translation;9.59763115093998e-45!GO:0015031;protein transport;5.68828089441699e-44!GO:0045184;establishment of protein localization;8.72369337868582e-44!GO:0031981;nuclear lumen;1.29246133137807e-43!GO:0008104;protein localization;3.37423421589591e-42!GO:0006396;RNA processing;3.6275574705322e-42!GO:0016071;mRNA metabolic process;4.03547456089286e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.82532709692732e-40!GO:0043234;protein complex;8.72527291841918e-40!GO:0008380;RNA splicing;5.36047404957738e-36!GO:0006397;mRNA processing;6.42773469852324e-35!GO:0016043;cellular component organization and biogenesis;3.29158713671687e-33!GO:0009059;macromolecule biosynthetic process;1.66454085945857e-32!GO:0005840;ribosome;5.57500622649585e-32!GO:0005829;cytosol;7.83277163374271e-32!GO:0031090;organelle membrane;2.08644694894595e-31!GO:0005739;mitochondrion;4.29194415593139e-31!GO:0012501;programmed cell death;4.79688256532713e-31!GO:0006915;apoptosis;4.79688256532713e-31!GO:0008219;cell death;4.44882162084651e-30!GO:0016265;death;4.44882162084651e-30!GO:0006886;intracellular protein transport;1.27798951828594e-29!GO:0046907;intracellular transport;2.13128612687843e-29!GO:0003676;nucleic acid binding;1.01636063284732e-28!GO:0031967;organelle envelope;1.97235519380757e-28!GO:0065003;macromolecular complex assembly;2.63766787026683e-28!GO:0031975;envelope;3.92260247213547e-28!GO:0003735;structural constituent of ribosome;5.58271045078996e-28!GO:0005654;nucleoplasm;1.65345717314928e-27!GO:0005681;spliceosome;2.51001157581038e-27!GO:0033279;ribosomal subunit;9.74956001713993e-27!GO:0009058;biosynthetic process;2.63156068317085e-25!GO:0044249;cellular biosynthetic process;2.98968780240244e-25!GO:0000166;nucleotide binding;5.59061782676563e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.4465509745898e-24!GO:0016070;RNA metabolic process;3.38239402031674e-24!GO:0022607;cellular component assembly;4.53310221389733e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.15984427090915e-24!GO:0044429;mitochondrial part;1.58254396122364e-23!GO:0006259;DNA metabolic process;3.72121637221473e-23!GO:0051649;establishment of cellular localization;9.24870614241075e-23!GO:0051641;cellular localization;1.67609644000102e-22!GO:0006512;ubiquitin cycle;2.1499028221819e-22!GO:0044451;nucleoplasm part;2.41097027745558e-22!GO:0008134;transcription factor binding;1.40931029805962e-21!GO:0044445;cytosolic part;1.82631014956745e-21!GO:0043412;biopolymer modification;2.16082583355483e-21!GO:0042981;regulation of apoptosis;4.56611716846008e-21!GO:0043067;regulation of programmed cell death;8.52079236006866e-21!GO:0006996;organelle organization and biogenesis;6.5716743214707e-20!GO:0016462;pyrophosphatase activity;3.04377143639458e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.31233394556251e-19!GO:0017111;nucleoside-triphosphatase activity;3.70783144213889e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2532483692778e-19!GO:0006464;protein modification process;4.26230029611405e-19!GO:0044265;cellular macromolecule catabolic process;6.44068695742915e-19!GO:0043687;post-translational protein modification;1.04366320122088e-18!GO:0022618;protein-RNA complex assembly;1.58500740708953e-18!GO:0032553;ribonucleotide binding;1.89054236371429e-18!GO:0032555;purine ribonucleotide binding;1.89054236371429e-18!GO:0019941;modification-dependent protein catabolic process;3.56338010160128e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.56338010160128e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.98561441319373e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.21461978383652e-18!GO:0050794;regulation of cellular process;4.55241011052521e-18!GO:0044257;cellular protein catabolic process;8.12217579855915e-18!GO:0017076;purine nucleotide binding;2.52150890316689e-17!GO:0016604;nuclear body;8.62253665442557e-17!GO:0005740;mitochondrial envelope;1.05852548493456e-16!GO:0006913;nucleocytoplasmic transport;1.12492999207872e-16!GO:0043285;biopolymer catabolic process;1.50552441379431e-16!GO:0031966;mitochondrial membrane;1.63768966018006e-16!GO:0006605;protein targeting;1.93748093603674e-16!GO:0051169;nuclear transport;2.40302140794221e-16!GO:0048523;negative regulation of cellular process;3.56927385633172e-16!GO:0019866;organelle inner membrane;4.18674495925176e-16!GO:0006119;oxidative phosphorylation;7.12495506518048e-16!GO:0005730;nucleolus;8.21357487035711e-16!GO:0016874;ligase activity;1.34779919898028e-15!GO:0007243;protein kinase cascade;3.95122583759122e-15!GO:0008135;translation factor activity, nucleic acid binding;1.31138995027931e-14!GO:0016607;nuclear speck;1.40877656084935e-14!GO:0002376;immune system process;1.78680882095508e-14!GO:0009057;macromolecule catabolic process;1.89213826601041e-14!GO:0043228;non-membrane-bound organelle;2.17766617542581e-14!GO:0043232;intracellular non-membrane-bound organelle;2.17766617542581e-14!GO:0005524;ATP binding;2.53385266343838e-14!GO:0006793;phosphorus metabolic process;3.89420890513704e-14!GO:0006796;phosphate metabolic process;3.89420890513704e-14!GO:0015935;small ribosomal subunit;3.94361358330545e-14!GO:0048519;negative regulation of biological process;4.40960239627312e-14!GO:0032559;adenyl ribonucleotide binding;5.40191928028415e-14!GO:0003712;transcription cofactor activity;6.00316936861593e-14!GO:0016192;vesicle-mediated transport;6.12920401081641e-14!GO:0005743;mitochondrial inner membrane;6.96790445511697e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.43453310895691e-13!GO:0015934;large ribosomal subunit;1.53596479512417e-13!GO:0050789;regulation of biological process;2.74300638871441e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.75154834340079e-13!GO:0048770;pigment granule;3.06104249996705e-13!GO:0042470;melanosome;3.06104249996705e-13!GO:0030163;protein catabolic process;3.52399416791845e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.53400205215772e-13!GO:0000375;RNA splicing, via transesterification reactions;4.53400205215772e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.53400205215772e-13!GO:0006366;transcription from RNA polymerase II promoter;7.19134529335517e-13!GO:0044248;cellular catabolic process;7.28667064684931e-13!GO:0030554;adenyl nucleotide binding;8.00867907958065e-13!GO:0006323;DNA packaging;1.19126395144558e-12!GO:0006457;protein folding;1.24593010312477e-12!GO:0007242;intracellular signaling cascade;1.28761394804278e-12!GO:0005635;nuclear envelope;1.71208293624967e-12!GO:0051246;regulation of protein metabolic process;1.89643800181151e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.22809986392899e-12!GO:0007049;cell cycle;2.30117995677704e-12!GO:0016310;phosphorylation;2.44573279155505e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.99643771212102e-12!GO:0044455;mitochondrial membrane part;3.88948082148613e-12!GO:0051276;chromosome organization and biogenesis;4.55116825628583e-12!GO:0003743;translation initiation factor activity;5.49351647298149e-12!GO:0065009;regulation of a molecular function;5.53492888431045e-12!GO:0012505;endomembrane system;5.57615642016484e-12!GO:0006413;translational initiation;6.2290507172463e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.56740744438318e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.92260413038597e-12!GO:0043069;negative regulation of programmed cell death;8.59682429832683e-12!GO:0019222;regulation of metabolic process;1.1572425484527e-11!GO:0016887;ATPase activity;1.21141297707438e-11!GO:0043066;negative regulation of apoptosis;1.34492306428186e-11!GO:0006974;response to DNA damage stimulus;1.46204412910802e-11!GO:0017038;protein import;1.95208404675229e-11!GO:0042623;ATPase activity, coupled;3.57966865088115e-11!GO:0005768;endosome;6.91183644948854e-11!GO:0031965;nuclear membrane;9.10555354645334e-11!GO:0008639;small protein conjugating enzyme activity;1.12919264925462e-10!GO:0006446;regulation of translational initiation;1.1807002367185e-10!GO:0006916;anti-apoptosis;1.40620435185387e-10!GO:0004386;helicase activity;1.9477281178257e-10!GO:0004842;ubiquitin-protein ligase activity;2.15077580674544e-10!GO:0005746;mitochondrial respiratory chain;2.24093487701767e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.3908391866075e-10!GO:0065007;biological regulation;2.66119971309229e-10!GO:0006955;immune response;2.98233660247817e-10!GO:0031324;negative regulation of cellular metabolic process;3.39081623364784e-10!GO:0051726;regulation of cell cycle;3.93332488068021e-10!GO:0005794;Golgi apparatus;4.61168173197787e-10!GO:0044453;nuclear membrane part;4.91807469849882e-10!GO:0000074;regulation of progression through cell cycle;6.76836340934077e-10!GO:0051170;nuclear import;8.17847443673891e-10!GO:0008026;ATP-dependent helicase activity;8.25341334390655e-10!GO:0019787;small conjugating protein ligase activity;9.14139052144994e-10!GO:0006606;protein import into nucleus;9.27419526308325e-10!GO:0050657;nucleic acid transport;1.26629529682349e-09!GO:0051236;establishment of RNA localization;1.26629529682349e-09!GO:0050658;RNA transport;1.26629529682349e-09!GO:0006403;RNA localization;1.85734872550062e-09!GO:0016568;chromatin modification;2.60845994962032e-09!GO:0050136;NADH dehydrogenase (quinone) activity;2.61546599225538e-09!GO:0003954;NADH dehydrogenase activity;2.61546599225538e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.61546599225538e-09!GO:0048522;positive regulation of cellular process;2.94111284233105e-09!GO:0006950;response to stress;3.62872935236266e-09!GO:0016787;hydrolase activity;3.66391383109133e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.89903496767804e-09!GO:0031980;mitochondrial lumen;4.11547069216414e-09!GO:0005759;mitochondrial matrix;4.11547069216414e-09!GO:0009892;negative regulation of metabolic process;4.13817275108396e-09!GO:0043065;positive regulation of apoptosis;4.48141245875578e-09!GO:0005773;vacuole;4.48141245875578e-09!GO:0031323;regulation of cellular metabolic process;5.17052450652657e-09!GO:0043068;positive regulation of programmed cell death;7.2021062420318e-09!GO:0016564;transcription repressor activity;7.48913395788943e-09!GO:0003713;transcription coactivator activity;7.55703776862447e-09!GO:0006417;regulation of translation;7.89400705063731e-09!GO:0019829;cation-transporting ATPase activity;8.00915498772082e-09!GO:0048193;Golgi vesicle transport;8.20255263707183e-09!GO:0006281;DNA repair;1.10599451018395e-08!GO:0006333;chromatin assembly or disassembly;1.16646830930393e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.16668510911991e-08!GO:0065004;protein-DNA complex assembly;1.26773617835613e-08!GO:0051082;unfolded protein binding;1.2826069321818e-08!GO:0005643;nuclear pore;1.51858742842562e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.91095563364904e-08!GO:0050790;regulation of catalytic activity;2.48557965145936e-08!GO:0016563;transcription activator activity;3.28462820835466e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.54897730912582e-08!GO:0042773;ATP synthesis coupled electron transport;3.54897730912582e-08!GO:0019899;enzyme binding;3.56619961558265e-08!GO:0000323;lytic vacuole;4.35033028147704e-08!GO:0005764;lysosome;4.35033028147704e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.41109911237964e-08!GO:0045321;leukocyte activation;5.12929315496007e-08!GO:0022402;cell cycle process;6.67371167230858e-08!GO:0008565;protein transporter activity;6.84493475160252e-08!GO:0016481;negative regulation of transcription;7.29490350935144e-08!GO:0006917;induction of apoptosis;7.47205679663631e-08!GO:0048518;positive regulation of biological process;7.79033681053293e-08!GO:0051028;mRNA transport;7.8161953362702e-08!GO:0030964;NADH dehydrogenase complex (quinone);8.5292846851445e-08!GO:0045271;respiratory chain complex I;8.5292846851445e-08!GO:0005747;mitochondrial respiratory chain complex I;8.5292846851445e-08!GO:0005694;chromosome;8.60589878896962e-08!GO:0009056;catabolic process;1.14554791610835e-07!GO:0016881;acid-amino acid ligase activity;1.16086971843811e-07!GO:0051186;cofactor metabolic process;1.16691507602425e-07!GO:0009889;regulation of biosynthetic process;1.18180517442203e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.21990429284288e-07!GO:0012502;induction of programmed cell death;1.26699711055343e-07!GO:0003924;GTPase activity;1.31888984655912e-07!GO:0031326;regulation of cellular biosynthetic process;1.43517050776748e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.73542484569257e-07!GO:0032446;protein modification by small protein conjugation;2.05816128820614e-07!GO:0045786;negative regulation of progression through cell cycle;2.10182425385752e-07!GO:0005770;late endosome;2.10182425385752e-07!GO:0009719;response to endogenous stimulus;2.12416806357936e-07!GO:0009967;positive regulation of signal transduction;2.80590559146677e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.92499300664566e-07!GO:0009615;response to virus;3.23499023843724e-07!GO:0042254;ribosome biogenesis and assembly;3.31633275339155e-07!GO:0015986;ATP synthesis coupled proton transport;3.43429804590478e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.43429804590478e-07!GO:0016567;protein ubiquitination;4.12154444760895e-07!GO:0042110;T cell activation;4.39968817745554e-07!GO:0043566;structure-specific DNA binding;4.59094686545816e-07!GO:0044440;endosomal part;4.68246126337467e-07!GO:0010008;endosome membrane;4.68246126337467e-07!GO:0046649;lymphocyte activation;4.8929228600666e-07!GO:0010468;regulation of gene expression;5.16396753203104e-07!GO:0065002;intracellular protein transport across a membrane;5.29200785193945e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.38257209236965e-07!GO:0005783;endoplasmic reticulum;5.51982295955608e-07!GO:0000785;chromatin;6.28935541596476e-07!GO:0005525;GTP binding;6.34805915973204e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.67271731861551e-07!GO:0009259;ribonucleotide metabolic process;7.40346008117832e-07!GO:0046930;pore complex;8.11228348349453e-07!GO:0006461;protein complex assembly;1.01082433935873e-06!GO:0006350;transcription;1.10184161162044e-06!GO:0044427;chromosomal part;1.13814847211352e-06!GO:0009260;ribonucleotide biosynthetic process;1.21512164727022e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.271089596495e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.41487703622596e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.48972300747391e-06!GO:0009150;purine ribonucleotide metabolic process;2.02491206211571e-06!GO:0006164;purine nucleotide biosynthetic process;2.02916677328954e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.06381872188674e-06!GO:0006732;coenzyme metabolic process;2.19205041756976e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.22607348980086e-06!GO:0003697;single-stranded DNA binding;2.26934575048106e-06!GO:0006163;purine nucleotide metabolic process;2.46616414240288e-06!GO:0005793;ER-Golgi intermediate compartment;2.58262713133909e-06!GO:0007264;small GTPase mediated signal transduction;2.88678387588397e-06!GO:0006754;ATP biosynthetic process;2.90815381336746e-06!GO:0006753;nucleoside phosphate metabolic process;2.90815381336746e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.05773629649145e-06!GO:0048468;cell development;3.52770386526382e-06!GO:0008047;enzyme activator activity;3.97311114044453e-06!GO:0009060;aerobic respiration;4.14237489028662e-06!GO:0044432;endoplasmic reticulum part;4.22441048029968e-06!GO:0008632;apoptotic program;4.23365571300243e-06!GO:0001775;cell activation;4.24755995127047e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.44496002959289e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.44496002959289e-06!GO:0003714;transcription corepressor activity;4.78658805808721e-06!GO:0006401;RNA catabolic process;5.18151460449814e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.10602950924607e-06!GO:0051168;nuclear export;6.51688408028429e-06!GO:0000245;spliceosome assembly;7.29453765057872e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.09351998262993e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.09351998262993e-06!GO:0000151;ubiquitin ligase complex;9.50415932457143e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.05699230161218e-05!GO:0005761;mitochondrial ribosome;1.07555040922234e-05!GO:0000313;organellar ribosome;1.07555040922234e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.16882387280544e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.20201897574688e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.24210634244585e-05!GO:0032561;guanyl ribonucleotide binding;1.24683044012027e-05!GO:0019001;guanyl nucleotide binding;1.24683044012027e-05!GO:0004674;protein serine/threonine kinase activity;1.29536906196398e-05!GO:0046034;ATP metabolic process;1.30038690029748e-05!GO:0006334;nucleosome assembly;1.30182588982268e-05!GO:0060090;molecular adaptor activity;1.30686055740564e-05!GO:0031497;chromatin assembly;1.41053436091443e-05!GO:0016363;nuclear matrix;1.43401608500401e-05!GO:0003724;RNA helicase activity;1.51980263784461e-05!GO:0016740;transferase activity;1.83271959563522e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.08042600281336e-05!GO:0004298;threonine endopeptidase activity;2.08497883231564e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.20796425981575e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.20796425981575e-05!GO:0009141;nucleoside triphosphate metabolic process;2.22774299052109e-05!GO:0009607;response to biotic stimulus;2.34672726871783e-05!GO:0006613;cotranslational protein targeting to membrane;2.34672726871783e-05!GO:0048475;coated membrane;2.49308035255935e-05!GO:0030117;membrane coat;2.49308035255935e-05!GO:0009966;regulation of signal transduction;3.13741647578971e-05!GO:0045259;proton-transporting ATP synthase complex;3.13741647578971e-05!GO:0016072;rRNA metabolic process;3.29588570730916e-05!GO:0005774;vacuolar membrane;3.35901352753018e-05!GO:0001772;immunological synapse;3.3883715911452e-05!GO:0008234;cysteine-type peptidase activity;3.46706843448989e-05!GO:0051336;regulation of hydrolase activity;3.82526666521679e-05!GO:0045333;cellular respiration;4.20680748243425e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.31392768288985e-05!GO:0006364;rRNA processing;4.36274326163131e-05!GO:0030120;vesicle coat;4.44903226025169e-05!GO:0030662;coated vesicle membrane;4.44903226025169e-05!GO:0001816;cytokine production;4.78592809761286e-05!GO:0006402;mRNA catabolic process;5.32735498910454e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.94188227898809e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.16608742499798e-05!GO:0015399;primary active transmembrane transporter activity;6.16608742499798e-05!GO:0002764;immune response-regulating signal transduction;6.50708056523701e-05!GO:0006260;DNA replication;7.86220851878998e-05!GO:0006399;tRNA metabolic process;8.27652673836347e-05!GO:0016197;endosome transport;8.72649530301299e-05!GO:0002757;immune response-activating signal transduction;8.72649530301299e-05!GO:0005789;endoplasmic reticulum membrane;8.87829611939782e-05!GO:0005813;centrosome;8.92093210780728e-05!GO:0051338;regulation of transferase activity;0.000100469139418166!GO:0007265;Ras protein signal transduction;0.00010144701971174!GO:0005057;receptor signaling protein activity;0.000102841791280327!GO:0001819;positive regulation of cytokine production;0.000104660074506469!GO:0009055;electron carrier activity;0.000108411142774102!GO:0031902;late endosome membrane;0.000109673003456321!GO:0031252;leading edge;0.000111596608795789!GO:0030695;GTPase regulator activity;0.00012209136502779!GO:0044437;vacuolar part;0.00012257340531705!GO:0009893;positive regulation of metabolic process;0.000123568319173091!GO:0051251;positive regulation of lymphocyte activation;0.000132319776725264!GO:0032774;RNA biosynthetic process;0.000133520923009212!GO:0043549;regulation of kinase activity;0.000134878245708722!GO:0045892;negative regulation of transcription, DNA-dependent;0.000141238165678154!GO:0006351;transcription, DNA-dependent;0.000141349506084794!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.000141349506084794!GO:0005765;lysosomal membrane;0.000148084673462472!GO:0005070;SH3/SH2 adaptor activity;0.000161328585516592!GO:0045449;regulation of transcription;0.0001634623613215!GO:0006099;tricarboxylic acid cycle;0.000168200825957211!GO:0046356;acetyl-CoA catabolic process;0.000168200825957211!GO:0008186;RNA-dependent ATPase activity;0.00017932086951829!GO:0000278;mitotic cell cycle;0.000184885996025265!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.000188004783310331!GO:0030097;hemopoiesis;0.000196477716318677!GO:0001817;regulation of cytokine production;0.000202919219588235!GO:0003729;mRNA binding;0.000210104060647823!GO:0045859;regulation of protein kinase activity;0.000222607839432634!GO:0031982;vesicle;0.000240830004809361!GO:0016779;nucleotidyltransferase activity;0.000241629469921797!GO:0005096;GTPase activator activity;0.000250937244660107!GO:0051427;hormone receptor binding;0.000273767911515039!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000278258220189697!GO:0004812;aminoacyl-tRNA ligase activity;0.000278258220189697!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000278258220189697!GO:0005885;Arp2/3 protein complex;0.000280886795110859!GO:0006612;protein targeting to membrane;0.000280886795110859!GO:0008270;zinc ion binding;0.000283511578422207!GO:0042101;T cell receptor complex;0.000310572450213251!GO:0051090;regulation of transcription factor activity;0.000312716577073199!GO:0051188;cofactor biosynthetic process;0.000347449108153927!GO:0005769;early endosome;0.000371217082304328!GO:0006084;acetyl-CoA metabolic process;0.00039299392748195!GO:0005815;microtubule organizing center;0.000408481700272499!GO:0046822;regulation of nucleocytoplasmic transport;0.000426136752268243!GO:0043038;amino acid activation;0.000436799433454951!GO:0006418;tRNA aminoacylation for protein translation;0.000436799433454951!GO:0043039;tRNA aminoacylation;0.000436799433454951!GO:0035257;nuclear hormone receptor binding;0.00050688583429521!GO:0051187;cofactor catabolic process;0.000511131810911251!GO:0004004;ATP-dependent RNA helicase activity;0.000517091763531558!GO:0016301;kinase activity;0.000519867526969607!GO:0043492;ATPase activity, coupled to movement of substances;0.000561515199654389!GO:0006752;group transfer coenzyme metabolic process;0.000561515199654389!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000630246450398552!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000650003115480829!GO:0006468;protein amino acid phosphorylation;0.000653870626613607!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000679343401441012!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000682254363918001!GO:0002520;immune system development;0.000686835608766679!GO:0022415;viral reproductive process;0.000686835608766679!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000686835608766679!GO:0003725;double-stranded RNA binding;0.000718883224613909!GO:0032940;secretion by cell;0.000758341398649278!GO:0009108;coenzyme biosynthetic process;0.000770286098207425!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000796175267680045!GO:0008654;phospholipid biosynthetic process;0.000802591202459185!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000803474581171853!GO:0043623;cellular protein complex assembly;0.000826972830526191!GO:0031410;cytoplasmic vesicle;0.000884002017557705!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000897388105197383!GO:0016251;general RNA polymerase II transcription factor activity;0.000948227551499698!GO:0007034;vacuolar transport;0.000976127321790431!GO:0031988;membrane-bound vesicle;0.000984537205105236!GO:0046983;protein dimerization activity;0.000992321031636107!GO:0019221;cytokine and chemokine mediated signaling pathway;0.000997479533440306!GO:0051789;response to protein stimulus;0.00100363576049924!GO:0006986;response to unfolded protein;0.00100363576049924!GO:0051223;regulation of protein transport;0.00100486950021878!GO:0044431;Golgi apparatus part;0.00101955086505335!GO:0030099;myeloid cell differentiation;0.00103509701663717!GO:0009109;coenzyme catabolic process;0.0010700404652899!GO:0043281;regulation of caspase activity;0.00110035447568262!GO:0043021;ribonucleoprotein binding;0.0011669760281576!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00120938300239777!GO:0007005;mitochondrion organization and biogenesis;0.00121270419142263!GO:0006611;protein export from nucleus;0.00125033045471165!GO:0016044;membrane organization and biogenesis;0.00126858611828222!GO:0007050;cell cycle arrest;0.00126858611828222!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00126858611828222!GO:0006607;NLS-bearing substrate import into nucleus;0.00127577623404968!GO:0045941;positive regulation of transcription;0.00131685069225175!GO:0005798;Golgi-associated vesicle;0.00136381511469841!GO:0001726;ruffle;0.00155533120900811!GO:0019783;small conjugating protein-specific protease activity;0.0015705102589956!GO:0031325;positive regulation of cellular metabolic process;0.00161827304783669!GO:0005083;small GTPase regulator activity;0.00161827304783669!GO:0006352;transcription initiation;0.00163628981059159!GO:0003690;double-stranded DNA binding;0.00173263809059203!GO:0048471;perinuclear region of cytoplasm;0.00174172177645202!GO:0031072;heat shock protein binding;0.00177092206322224!GO:0005667;transcription factor complex;0.00177092206322224!GO:0006919;caspase activation;0.00181399603572683!GO:0022890;inorganic cation transmembrane transporter activity;0.00209438970169223!GO:0043280;positive regulation of caspase activity;0.00213888939257936!GO:0004843;ubiquitin-specific protease activity;0.00214675562747003!GO:0006355;regulation of transcription, DNA-dependent;0.00218146302377309!GO:0006818;hydrogen transport;0.00218164411748976!GO:0030384;phosphoinositide metabolic process;0.00227541284680031!GO:0016023;cytoplasmic membrane-bound vesicle;0.00232483906781823!GO:0045893;positive regulation of transcription, DNA-dependent;0.00236599870506974!GO:0015630;microtubule cytoskeleton;0.00236736133280276!GO:0015992;proton transport;0.00240840698953838!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00245178193984614!GO:0005741;mitochondrial outer membrane;0.00274477923654498!GO:0005637;nuclear inner membrane;0.00282645095076127!GO:0018193;peptidyl-amino acid modification;0.00285271173622295!GO:0048534;hemopoietic or lymphoid organ development;0.002950026743598!GO:0002521;leukocyte differentiation;0.00302603860985154!GO:0050851;antigen receptor-mediated signaling pathway;0.00304314816527539!GO:0002252;immune effector process;0.00307920719388355!GO:0015631;tubulin binding;0.00310837116859903!GO:0017091;AU-rich element binding;0.00330167569986574!GO:0050779;RNA destabilization;0.00330167569986574!GO:0000289;poly(A) tail shortening;0.00330167569986574!GO:0006672;ceramide metabolic process;0.00330981489667577!GO:0051707;response to other organism;0.00341642572754019!GO:0006891;intra-Golgi vesicle-mediated transport;0.00344687503968158!GO:0050870;positive regulation of T cell activation;0.00350028157623145!GO:0051092;activation of NF-kappaB transcription factor;0.00350028157623145!GO:0008287;protein serine/threonine phosphatase complex;0.00350189694546783!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00350248588224389!GO:0046914;transition metal ion binding;0.00353326811784917!GO:0045637;regulation of myeloid cell differentiation;0.0035511110421207!GO:0050871;positive regulation of B cell activation;0.00365924485493375!GO:0009117;nucleotide metabolic process;0.00383627065684337!GO:0043087;regulation of GTPase activity;0.00389029576180418!GO:0019220;regulation of phosphate metabolic process;0.00400715969614636!GO:0051174;regulation of phosphorus metabolic process;0.00400715969614636!GO:0050865;regulation of cell activation;0.00400715969614636!GO:0019843;rRNA binding;0.00408085806981405!GO:0051252;regulation of RNA metabolic process;0.00409822138091524!GO:0046966;thyroid hormone receptor binding;0.00411101649194092!GO:0006310;DNA recombination;0.00411101649194092!GO:0002440;production of molecular mediator of immune response;0.00414213721737433!GO:0030658;transport vesicle membrane;0.00415135700030856!GO:0031968;organelle outer membrane;0.00415481498728352!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00415481498728352!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00415481498728352!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00415481498728352!GO:0046519;sphingoid metabolic process;0.00425361997453346!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00430724678998235!GO:0006261;DNA-dependent DNA replication;0.0043942140464257!GO:0033157;regulation of intracellular protein transport;0.00440522210861444!GO:0042306;regulation of protein import into nucleus;0.00440522210861444!GO:0030258;lipid modification;0.00444074984818343!GO:0006405;RNA export from nucleus;0.00444427185293348!GO:0031625;ubiquitin protein ligase binding;0.00444844566128295!GO:0006984;ER-nuclear signaling pathway;0.00445399976063033!GO:0043085;positive regulation of catalytic activity;0.00456875566690927!GO:0004221;ubiquitin thiolesterase activity;0.00459161221213816!GO:0019867;outer membrane;0.00464186471319285!GO:0048500;signal recognition particle;0.00469195182533886!GO:0002274;myeloid leukocyte activation;0.00475894818909246!GO:0007259;JAK-STAT cascade;0.00483368173315528!GO:0051249;regulation of lymphocyte activation;0.00495442786951335!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00505986072051248!GO:0050900;leukocyte migration;0.00520131792827047!GO:0042287;MHC protein binding;0.00537292980263731!GO:0016791;phosphoric monoester hydrolase activity;0.00553800279055676!GO:0007041;lysosomal transport;0.00557155674313554!GO:0006650;glycerophospholipid metabolic process;0.00561694234335083!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00563327200208931!GO:0030968;unfolded protein response;0.00568612211526459!GO:0030217;T cell differentiation;0.00579726211755776!GO:0003711;transcription elongation regulator activity;0.00600823284633862!GO:0016311;dephosphorylation;0.00672353392074415!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00672646719206706!GO:0019904;protein domain specific binding;0.00700698657206223!GO:0051345;positive regulation of hydrolase activity;0.00727356010871436!GO:0016584;nucleosome positioning;0.00745242172953074!GO:0019901;protein kinase binding;0.00755858452323014!GO:0051098;regulation of binding;0.00757475388302433!GO:0033116;ER-Golgi intermediate compartment membrane;0.0076133237987114!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00767528985555725!GO:0045058;T cell selection;0.00769163831045761!GO:0043433;negative regulation of transcription factor activity;0.00780294469910501!GO:0043488;regulation of mRNA stability;0.00788297796207624!GO:0043487;regulation of RNA stability;0.00788297796207624!GO:0006643;membrane lipid metabolic process;0.00800998024298738!GO:0022411;cellular component disassembly;0.008054264129893!GO:0046467;membrane lipid biosynthetic process;0.00870991806716668!GO:0051091;positive regulation of transcription factor activity;0.00874922219512085!GO:0030041;actin filament polymerization;0.00898572772115609!GO:0046489;phosphoinositide biosynthetic process;0.00906810133498049!GO:0000209;protein polyubiquitination;0.00931059848572726!GO:0045045;secretory pathway;0.00950607547263183!GO:0050863;regulation of T cell activation;0.00954941467775001!GO:0030036;actin cytoskeleton organization and biogenesis;0.00958066455295574!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00964281205110111!GO:0045047;protein targeting to ER;0.00964281205110111!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00964458814078401!GO:0045603;positive regulation of endothelial cell differentiation;0.00978818697779833!GO:0002443;leukocyte mediated immunity;0.0101083401577379!GO:0000786;nucleosome;0.0101161305050784!GO:0033673;negative regulation of kinase activity;0.0103879852360532!GO:0006469;negative regulation of protein kinase activity;0.0103879852360532!GO:0030660;Golgi-associated vesicle membrane;0.0104602057086245!GO:0004722;protein serine/threonine phosphatase activity;0.0104836525642313!GO:0019079;viral genome replication;0.010667395384888!GO:0030518;steroid hormone receptor signaling pathway;0.0106934048511566!GO:0042990;regulation of transcription factor import into nucleus;0.010816085515675!GO:0042991;transcription factor import into nucleus;0.010816085515675!GO:0033367;protein localization in mast cell secretory granule;0.010816085515675!GO:0033365;protein localization in organelle;0.010816085515675!GO:0033371;T cell secretory granule organization and biogenesis;0.010816085515675!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.010816085515675!GO:0033375;protease localization in T cell secretory granule;0.010816085515675!GO:0042629;mast cell granule;0.010816085515675!GO:0033377;maintenance of protein localization in T cell secretory granule;0.010816085515675!GO:0033364;mast cell secretory granule organization and biogenesis;0.010816085515675!GO:0033380;granzyme B localization in T cell secretory granule;0.010816085515675!GO:0033379;maintenance of protease localization in T cell secretory granule;0.010816085515675!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.010816085515675!GO:0033368;protease localization in mast cell secretory granule;0.010816085515675!GO:0033366;protein localization in secretory granule;0.010816085515675!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.010816085515675!GO:0033374;protein localization in T cell secretory granule;0.010816085515675!GO:0046474;glycerophospholipid biosynthetic process;0.0110713677387283!GO:0008312;7S RNA binding;0.0116439998143751!GO:0006376;mRNA splice site selection;0.0119441564511382!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0119441564511382!GO:0019058;viral infectious cycle;0.0119441564511382!GO:0008624;induction of apoptosis by extracellular signals;0.0119441564511382!GO:0030118;clathrin coat;0.0119441564511382!GO:0045454;cell redox homeostasis;0.0119441564511382!GO:0030127;COPII vesicle coat;0.0119441564511382!GO:0012507;ER to Golgi transport vesicle membrane;0.0119441564511382!GO:0008139;nuclear localization sequence binding;0.0120457532258481!GO:0008637;apoptotic mitochondrial changes;0.0123140175738649!GO:0032318;regulation of Ras GTPase activity;0.0124775743878833!GO:0000139;Golgi membrane;0.0125186776482516!GO:0051348;negative regulation of transferase activity;0.0126136396006431!GO:0042802;identical protein binding;0.0126309431596203!GO:0004185;serine carboxypeptidase activity;0.0127077731473613!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0129027612653863!GO:0005669;transcription factor TFIID complex;0.0130634211383543!GO:0004197;cysteine-type endopeptidase activity;0.0130634211383543!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0130634211383543!GO:0043681;protein import into mitochondrion;0.0132082975380388!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0134917212955264!GO:0030521;androgen receptor signaling pathway;0.0135378356939341!GO:0005684;U2-dependent spliceosome;0.0136343028336365!GO:0006414;translational elongation;0.0138339271429737!GO:0050811;GABA receptor binding;0.013867286170373!GO:0000087;M phase of mitotic cell cycle;0.013867286170373!GO:0051087;chaperone binding;0.0145669896165862!GO:0048487;beta-tubulin binding;0.0147359581878524!GO:0008017;microtubule binding;0.0149715198238924!GO:0003746;translation elongation factor activity;0.0149903841591409!GO:0005762;mitochondrial large ribosomal subunit;0.0151197057791315!GO:0000315;organellar large ribosomal subunit;0.0151197057791315!GO:0006968;cellular defense response;0.0155475903078637!GO:0006338;chromatin remodeling;0.0156295766741825!GO:0005048;signal sequence binding;0.0157731854487963!GO:0031901;early endosome membrane;0.0159232627231554!GO:0006897;endocytosis;0.0161763776415692!GO:0010324;membrane invagination;0.0161763776415692!GO:0051235;maintenance of localization;0.0167009380343578!GO:0030134;ER to Golgi transport vesicle;0.0172603277399252!GO:0043022;ribosome binding;0.0172715664811154!GO:0006661;phosphatidylinositol biosynthetic process;0.0174790004828413!GO:0008629;induction of apoptosis by intracellular signals;0.0175862163551008!GO:0030149;sphingolipid catabolic process;0.0179342749561982!GO:0045576;mast cell activation;0.0180233859881384!GO:0003899;DNA-directed RNA polymerase activity;0.0180275619902413!GO:0032763;regulation of mast cell cytokine production;0.0186511453537436!GO:0032762;mast cell cytokine production;0.0186511453537436!GO:0016788;hydrolase activity, acting on ester bonds;0.0189957796916033!GO:0043300;regulation of leukocyte degranulation;0.0190871242928371!GO:0030867;rough endoplasmic reticulum membrane;0.0193032435602179!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0193032435602179!GO:0007067;mitosis;0.0193066622802955!GO:0000165;MAPKKK cascade;0.0193066622802955!GO:0047485;protein N-terminus binding;0.0194557499544945!GO:0003677;DNA binding;0.020004914920723!GO:0051329;interphase of mitotic cell cycle;0.0201382395207383!GO:0016790;thiolester hydrolase activity;0.0201889636850381!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0203738101547859!GO:0030218;erythrocyte differentiation;0.0204287824317782!GO:0006383;transcription from RNA polymerase III promoter;0.0206567413334857!GO:0015923;mannosidase activity;0.0210509510799457!GO:0005521;lamin binding;0.0217140103382298!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0219264327978801!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0219264327978801!GO:0000118;histone deacetylase complex;0.0219770210345727!GO:0051052;regulation of DNA metabolic process;0.0221439363344768!GO:0003678;DNA helicase activity;0.0221507659308493!GO:0004721;phosphoprotein phosphatase activity;0.0224513234624265!GO:0004672;protein kinase activity;0.0225808577903286!GO:0016605;PML body;0.0225941574304843!GO:0043299;leukocyte degranulation;0.0228850882404294!GO:0042325;regulation of phosphorylation;0.0229993017627453!GO:0032386;regulation of intracellular transport;0.0234063320401911!GO:0042108;positive regulation of cytokine biosynthetic process;0.0240917498541294!GO:0019900;kinase binding;0.0244521523896679!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0245255261468904!GO:0051301;cell division;0.0248828914824191!GO:0051049;regulation of transport;0.024897270624332!GO:0030433;ER-associated protein catabolic process;0.0255669627744774!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0255669627744774!GO:0051101;regulation of DNA binding;0.0257684057280957!GO:0016859;cis-trans isomerase activity;0.02581615228365!GO:0000119;mediator complex;0.0260664737377476!GO:0016585;chromatin remodeling complex;0.0262220714376269!GO:0002467;germinal center formation;0.0262638942594073!GO:0001667;ameboidal cell migration;0.0262638942594073!GO:0032027;myosin light chain binding;0.0262638942594073!GO:0004177;aminopeptidase activity;0.0262638942594073!GO:0019883;antigen processing and presentation of endogenous antigen;0.0263258316272652!GO:0007040;lysosome organization and biogenesis;0.0267231952192622!GO:0009165;nucleotide biosynthetic process;0.0273833624957815!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0281077337018396!GO:0005869;dynactin complex;0.0290689500552878!GO:0042113;B cell activation;0.0294212481601371!GO:0030176;integral to endoplasmic reticulum membrane;0.0303160700324918!GO:0005099;Ras GTPase activator activity;0.0306580393861172!GO:0019210;kinase inhibitor activity;0.0310011935082981!GO:0030522;intracellular receptor-mediated signaling pathway;0.031307726462645!GO:0051051;negative regulation of transport;0.0314766720993256!GO:0006914;autophagy;0.0316327959497403!GO:0000082;G1/S transition of mitotic cell cycle;0.0316327959497403!GO:0046854;phosphoinositide phosphorylation;0.0318380053278921!GO:0003682;chromatin binding;0.0319144799220811!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.032391687291588!GO:0002819;regulation of adaptive immune response;0.032391687291588!GO:0005791;rough endoplasmic reticulum;0.0327970616783477!GO:0002682;regulation of immune system process;0.0327970616783477!GO:0015980;energy derivation by oxidation of organic compounds;0.0330715450919253!GO:0040029;regulation of gene expression, epigenetic;0.0331853587050583!GO:0009299;mRNA transcription;0.0333065017105674!GO:0003702;RNA polymerase II transcription factor activity;0.0333264936874839!GO:0002377;immunoglobulin production;0.0333382406282454!GO:0030098;lymphocyte differentiation;0.0334689470287628!GO:0043621;protein self-association;0.0339708421856025!GO:0035035;histone acetyltransferase binding;0.0340340481816776!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.034034519609034!GO:0008154;actin polymerization and/or depolymerization;0.0343139418064812!GO:0006213;pyrimidine nucleoside metabolic process;0.0343139418064812!GO:0030674;protein binding, bridging;0.0346210635397386!GO:0019377;glycolipid catabolic process;0.0348588574211874!GO:0008022;protein C-terminus binding;0.0354547600220698!GO:0051059;NF-kappaB binding;0.0364580242163777!GO:0007006;mitochondrial membrane organization and biogenesis;0.0369265370601343!GO:0042608;T cell receptor binding;0.0369622413211453!GO:0022403;cell cycle phase;0.0375774455251251!GO:0004860;protein kinase inhibitor activity;0.0375774455251251!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0378824226816969!GO:0005788;endoplasmic reticulum lumen;0.0380298941694961!GO:0000060;protein import into nucleus, translocation;0.0382911803796669!GO:0051325;interphase;0.0386152865629559!GO:0032200;telomere organization and biogenesis;0.0388499844627972!GO:0000723;telomere maintenance;0.0388499844627972!GO:0000303;response to superoxide;0.0390973017795034!GO:0006302;double-strand break repair;0.0398116403820821!GO:0043407;negative regulation of MAP kinase activity;0.0399353776833443!GO:0030029;actin filament-based process;0.040203507335078!GO:0005819;spindle;0.0402692891663163!GO:0044452;nucleolar part;0.0406489962833373!GO:0045069;regulation of viral genome replication;0.040969078052398!GO:0006354;RNA elongation;0.041259711108172!GO:0001516;prostaglandin biosynthetic process;0.041277245657749!GO:0046457;prostanoid biosynthetic process;0.041277245657749!GO:0004527;exonuclease activity;0.041277245657749!GO:0002237;response to molecule of bacterial origin;0.0417621320355138!GO:0032507;maintenance of cellular protein localization;0.0419796164227534!GO:0000059;protein import into nucleus, docking;0.0422391280230164!GO:0008333;endosome to lysosome transport;0.0422391280230164!GO:0007033;vacuole organization and biogenesis;0.0422391280230164!GO:0000776;kinetochore;0.0422391280230164!GO:0030595;leukocyte chemotaxis;0.0425325665504085!GO:0002218;activation of innate immune response;0.0427017842245729!GO:0002758;innate immune response-activating signal transduction;0.0427017842245729!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0428896999640996!GO:0050852;T cell receptor signaling pathway;0.0428896999640996!GO:0022406;membrane docking;0.0436549873818191!GO:0048278;vesicle docking;0.0436549873818191!GO:0000314;organellar small ribosomal subunit;0.0438389434905222!GO:0005763;mitochondrial small ribosomal subunit;0.0438389434905222!GO:0002449;lymphocyte mediated immunity;0.0444602794244392!GO:0006904;vesicle docking during exocytosis;0.0447593938988064!GO:0001891;phagocytic cup;0.0447638172460867!GO:0006470;protein amino acid dephosphorylation;0.0447638172460867!GO:0001836;release of cytochrome c from mitochondria;0.0455324610684317!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0455324610684317!GO:0043405;regulation of MAP kinase activity;0.0464035002171583!GO:0004218;cathepsin S activity;0.0464138364859216!GO:0045947;negative regulation of translational initiation;0.0466486687337749!GO:0043304;regulation of mast cell degranulation;0.0474679374199569!GO:0002444;myeloid leukocyte mediated immunity;0.047856951725541!GO:0031098;stress-activated protein kinase signaling pathway;0.048478328905559!GO:0006926;virus-infected cell apoptosis;0.0487365812275906!GO:0006952;defense response;0.0492538829634869!GO:0006595;polyamine metabolic process;0.0493005369428476!GO:0045084;positive regulation of interleukin-12 biosynthetic process;0.049447512383584!GO:0033549;MAP kinase phosphatase activity;0.0496676769275582!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0496676769275582!GO:0008097;5S rRNA binding;0.0497935644166745!GO:0046834;lipid phosphorylation;0.0499666666393672 | |||
|sample_id=12242 | |sample_id=12242 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=RUNX1..3:3.97760703373;RORA:3.4628167701;ETS1,2:3.30712987554;RFX2..5_RFXANK_RFXAP:2.92301840255;DMAP1_NCOR{1,2}_SMARC:2.90818587495;ATF5_CREB3:2.90711199811;NFIL3:2.87765810838;SPIB:2.83203274713;SPI1:2.78081616597;PAX2:2.77069239346;ELF1,2,4:2.74881902629;T:2.74499693266;NFKB1_REL_RELA:2.63121551136;FOSL2:2.62791633654;PAX3,7:2.61268054879;FOX{D1,D2}:2.58682868621;FOS_FOS{B,L1}_JUN{B,D}:2.56149697731;FOXO1,3,4:2.55383102465;CREB1:2.48077986173;BACH2:2.4328150556;NFE2:2.34397890407;NANOG{mouse}:2.24527192706;BPTF:2.14401570806;TGIF1:2.1275771042;ATF4:2.10073530273;HLF:1.96579468631;FOX{F1,F2,J1}:1.92741695219;HMGA1,2:1.88623475075;IRF1,2:1.86589748139;JUN:1.82973716414;RFX1:1.79685897257;CEBPA,B_DDIT3:1.76047283223;FOXN1:1.70885553483;RXRA_VDR{dimer}:1.70188453077;NFATC1..3:1.67507978173;HMX1:1.64162946204;EP300:1.5725142189;NFE2L2:1.50315455534;NKX2-1,4:1.42017563554;TBX4,5:1.41907664319;MAFB:1.39164334368;HIF1A:1.37511544577;SREBF1,2:1.32147111937;ATF2:1.30272495327;FOXP3:1.27296042272;NFE2L1:1.27199273931;IRF7:1.19132015375;ATF6:0.869728601963;SMAD1..7,9:0.833173246953;PAX6:0.766323665076;HBP1_HMGB_SSRP1_UBTF:0.688520523221;FOX{I1,J2}:0.674105299768;NANOG:0.633615687994;STAT2,4,6:0.56571348805;GATA6:0.537591352518;CDX1,2,4:0.484133538817;SOX2:0.442142427677;TLX2:0.435325105609;GLI1..3:0.435277709333;BREu{core}:0.405311789451;PDX1:0.402637582165;MYB:0.363790617218;RBPJ:0.316221319426;NR1H4:0.192439339438;DBP:0.159605122694;TFAP4:0.0944496571539;PAX8:-0.02193240975;HSF1,2:-0.0248234520748;PPARG:-0.0424838739345;POU2F1..3:-0.0543309020149;MYFfamily:-0.0609869132655;AHR_ARNT_ARNT2:-0.0929503799164;CRX:-0.0946515474497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.117274238384;GCM1,2:-0.129616550814;FOXP1:-0.129929068165;HOXA9_MEIS1:-0.147487509037;XBP1:-0.149275988773;SOX5:-0.16995249316;POU5F1:-0.184639960122;FOXA2:-0.197435307379;ALX4:-0.210996725045;NHLH1,2:-0.235827893741;TFDP1:-0.276897381532;MEF2{A,B,C,D}:-0.281796191046;EN1,2:-0.301401750861;SRF:-0.312793640869;ESRRA:-0.323103322124;GATA4:-0.336989809159;HOX{A5,B5}:-0.353322194792;TFCP2:-0.358453134572;SPZ1:-0.370698871103;TAL1_TCF{3,4,12}:-0.385269755524;ZNF238:-0.389513319444;NFIX:-0.42144628424;ELK1,4_GABP{A,B1}:-0.436862871881;HES1:-0.443840794305;PITX1..3:-0.449769117693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.451851033468;PAX4:-0.457770179364;ZNF384:-0.462339569371;VSX1,2:-0.477944383983;FOXD3:-0.483832333957;NKX2-2,8:-0.504534934009;LEF1_TCF7_TCF7L1,2:-0.534078361421;NR5A1,2:-0.5618605204;EGR1..3:-0.609164864636;TBP:-0.613705162611;PBX1:-0.615677276551;OCT4_SOX2{dimer}:-0.639358148618;NKX3-1:-0.643920120401;MZF1:-0.659098880316;MED-1{core}:-0.670398703154;MTF1:-0.673056360455;ZBTB16:-0.685454934011;E2F1..5:-0.691748781981;NFY{A,B,C}:-0.700032617746;MTE{core}:-0.701845033337;STAT5{A,B}:-0.705812387791;PRRX1,2:-0.746208408406;IKZF2:-0.762391538574;PATZ1:-0.785575448866;MYOD1:-0.796007875953;STAT1,3:-0.813742852901;ZEB1:-0.819660643558;HNF1A:-0.819691318949;ZFP161:-0.821175871272;ALX1:-0.851562291179;AIRE:-0.852951366065;HNF4A_NR2F1,2:-0.910221347393;PAX5:-0.925388405525;FOXM1:-0.965159302569;FOXL1:-0.969139353703;SOX{8,9,10}:-0.973269509205;SNAI1..3:-1.00143646534;ZNF148:-1.0253422488;REST:-1.02735164014;CUX2:-1.04566571645;NR3C1:-1.08391840561;NKX2-3_NKX2-5:-1.13533668025;ESR1:-1.16588680793;NRF1:-1.22291127532;TFAP2B:-1.23640456107;PRDM1:-1.23930730884;YY1:-1.27174092146;RXR{A,B,G}:-1.27291516897;ZBTB6:-1.29418429596;ZNF423:-1.3121499015;HOX{A6,A7,B6,B7}:-1.35211499161;MAZ:-1.35405365546;SP1:-1.37363301218;FOXQ1:-1.37529695815;ADNP_IRX_SIX_ZHX:-1.41878850542;MYBL2:-1.4500365683;GFI1B:-1.46092135039;bHLH_family:-1.49790273349;AR:-1.50385375368;TFAP2{A,C}:-1.53702204076;GTF2I:-1.53847011378;LHX3,4:-1.58068416768;TLX1..3_NFIC{dimer}:-1.58292988059;POU1F1:-1.59891795707;TP53:-1.62419470981;LMO2:-1.63939858154;NKX6-1,2:-1.65847110821;GFI1:-1.6916632042;CDC5L:-1.72415511001;HIC1:-1.73330654049;RREB1:-1.7736583286;GZF1:-1.79204303878;GTF2A1,2:-1.83588372334;NR6A1:-1.87394899808;TEAD1:-1.89406272716;ZIC1..3:-1.91707413153;TEF:-1.94206202323;ZNF143:-1.95456889078;EVI1:-1.97358671486;PAX1,9:-2.02412330952;TOPORS:-2.12541693771;HAND1,2:-2.13882383303;SOX17:-2.14423977584;IKZF1:-2.16016246313;KLF4:-2.16165185734;EBF1:-2.20800723275;XCPE1{core}:-2.21926407987;HOX{A4,D4}:-2.27682069292;ARID5B:-2.27971747573;UFEwm:-2.61758216366;NKX3-2:-2.63423009154;POU6F1:-2.79003022373;ONECUT1,2:-3.04223271514;POU3F1..4:-3.09680935287 | |top_motifs=RUNX1..3:3.97760703373;RORA:3.4628167701;ETS1,2:3.30712987554;RFX2..5_RFXANK_RFXAP:2.92301840255;DMAP1_NCOR{1,2}_SMARC:2.90818587495;ATF5_CREB3:2.90711199811;NFIL3:2.87765810838;SPIB:2.83203274713;SPI1:2.78081616597;PAX2:2.77069239346;ELF1,2,4:2.74881902629;T:2.74499693266;NFKB1_REL_RELA:2.63121551136;FOSL2:2.62791633654;PAX3,7:2.61268054879;FOX{D1,D2}:2.58682868621;FOS_FOS{B,L1}_JUN{B,D}:2.56149697731;FOXO1,3,4:2.55383102465;CREB1:2.48077986173;BACH2:2.4328150556;NFE2:2.34397890407;NANOG{mouse}:2.24527192706;BPTF:2.14401570806;TGIF1:2.1275771042;ATF4:2.10073530273;HLF:1.96579468631;FOX{F1,F2,J1}:1.92741695219;HMGA1,2:1.88623475075;IRF1,2:1.86589748139;JUN:1.82973716414;RFX1:1.79685897257;CEBPA,B_DDIT3:1.76047283223;FOXN1:1.70885553483;RXRA_VDR{dimer}:1.70188453077;NFATC1..3:1.67507978173;HMX1:1.64162946204;EP300:1.5725142189;NFE2L2:1.50315455534;NKX2-1,4:1.42017563554;TBX4,5:1.41907664319;MAFB:1.39164334368;HIF1A:1.37511544577;SREBF1,2:1.32147111937;ATF2:1.30272495327;FOXP3:1.27296042272;NFE2L1:1.27199273931;IRF7:1.19132015375;ATF6:0.869728601963;SMAD1..7,9:0.833173246953;PAX6:0.766323665076;HBP1_HMGB_SSRP1_UBTF:0.688520523221;FOX{I1,J2}:0.674105299768;NANOG:0.633615687994;STAT2,4,6:0.56571348805;GATA6:0.537591352518;CDX1,2,4:0.484133538817;SOX2:0.442142427677;TLX2:0.435325105609;GLI1..3:0.435277709333;BREu{core}:0.405311789451;PDX1:0.402637582165;MYB:0.363790617218;RBPJ:0.316221319426;NR1H4:0.192439339438;DBP:0.159605122694;TFAP4:0.0944496571539;PAX8:-0.02193240975;HSF1,2:-0.0248234520748;PPARG:-0.0424838739345;POU2F1..3:-0.0543309020149;MYFfamily:-0.0609869132655;AHR_ARNT_ARNT2:-0.0929503799164;CRX:-0.0946515474497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.117274238384;GCM1,2:-0.129616550814;FOXP1:-0.129929068165;HOXA9_MEIS1:-0.147487509037;XBP1:-0.149275988773;SOX5:-0.16995249316;POU5F1:-0.184639960122;FOXA2:-0.197435307379;ALX4:-0.210996725045;NHLH1,2:-0.235827893741;TFDP1:-0.276897381532;MEF2{A,B,C,D}:-0.281796191046;EN1,2:-0.301401750861;SRF:-0.312793640869;ESRRA:-0.323103322124;GATA4:-0.336989809159;HOX{A5,B5}:-0.353322194792;TFCP2:-0.358453134572;SPZ1:-0.370698871103;TAL1_TCF{3,4,12}:-0.385269755524;ZNF238:-0.389513319444;NFIX:-0.42144628424;ELK1,4_GABP{A,B1}:-0.436862871881;HES1:-0.443840794305;PITX1..3:-0.449769117693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.451851033468;PAX4:-0.457770179364;ZNF384:-0.462339569371;VSX1,2:-0.477944383983;FOXD3:-0.483832333957;NKX2-2,8:-0.504534934009;LEF1_TCF7_TCF7L1,2:-0.534078361421;NR5A1,2:-0.5618605204;EGR1..3:-0.609164864636;TBP:-0.613705162611;PBX1:-0.615677276551;OCT4_SOX2{dimer}:-0.639358148618;NKX3-1:-0.643920120401;MZF1:-0.659098880316;MED-1{core}:-0.670398703154;MTF1:-0.673056360455;ZBTB16:-0.685454934011;E2F1..5:-0.691748781981;NFY{A,B,C}:-0.700032617746;MTE{core}:-0.701845033337;STAT5{A,B}:-0.705812387791;PRRX1,2:-0.746208408406;IKZF2:-0.762391538574;PATZ1:-0.785575448866;MYOD1:-0.796007875953;STAT1,3:-0.813742852901;ZEB1:-0.819660643558;HNF1A:-0.819691318949;ZFP161:-0.821175871272;ALX1:-0.851562291179;AIRE:-0.852951366065;HNF4A_NR2F1,2:-0.910221347393;PAX5:-0.925388405525;FOXM1:-0.965159302569;FOXL1:-0.969139353703;SOX{8,9,10}:-0.973269509205;SNAI1..3:-1.00143646534;ZNF148:-1.0253422488;REST:-1.02735164014;CUX2:-1.04566571645;NR3C1:-1.08391840561;NKX2-3_NKX2-5:-1.13533668025;ESR1:-1.16588680793;NRF1:-1.22291127532;TFAP2B:-1.23640456107;PRDM1:-1.23930730884;YY1:-1.27174092146;RXR{A,B,G}:-1.27291516897;ZBTB6:-1.29418429596;ZNF423:-1.3121499015;HOX{A6,A7,B6,B7}:-1.35211499161;MAZ:-1.35405365546;SP1:-1.37363301218;FOXQ1:-1.37529695815;ADNP_IRX_SIX_ZHX:-1.41878850542;MYBL2:-1.4500365683;GFI1B:-1.46092135039;bHLH_family:-1.49790273349;AR:-1.50385375368;TFAP2{A,C}:-1.53702204076;GTF2I:-1.53847011378;LHX3,4:-1.58068416768;TLX1..3_NFIC{dimer}:-1.58292988059;POU1F1:-1.59891795707;TP53:-1.62419470981;LMO2:-1.63939858154;NKX6-1,2:-1.65847110821;GFI1:-1.6916632042;CDC5L:-1.72415511001;HIC1:-1.73330654049;RREB1:-1.7736583286;GZF1:-1.79204303878;GTF2A1,2:-1.83588372334;NR6A1:-1.87394899808;TEAD1:-1.89406272716;ZIC1..3:-1.91707413153;TEF:-1.94206202323;ZNF143:-1.95456889078;EVI1:-1.97358671486;PAX1,9:-2.02412330952;TOPORS:-2.12541693771;HAND1,2:-2.13882383303;SOX17:-2.14423977584;IKZF1:-2.16016246313;KLF4:-2.16165185734;EBF1:-2.20800723275;XCPE1{core}:-2.21926407987;HOX{A4,D4}:-2.27682069292;ARID5B:-2.27971747573;UFEwm:-2.61758216366;NKX3-2:-2.63423009154;POU6F1:-2.79003022373;ONECUT1,2:-3.04223271514;POU3F1..4:-3.09680935287 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12242-129H1;search_select_hide=table117:FF:12242-129H1 | |||
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Latest revision as of 18:36, 4 June 2020
| Name: | Basophils, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12563 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12563
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12563
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.346 |
| 10 | 10 | 0.0191 |
| 100 | 100 | 0.495 |
| 101 | 101 | 0.603 |
| 102 | 102 | 0.824 |
| 103 | 103 | 0.342 |
| 104 | 104 | 0.421 |
| 105 | 105 | 0.141 |
| 106 | 106 | 0.0101 |
| 107 | 107 | 0.962 |
| 108 | 108 | 0.522 |
| 109 | 109 | 0.352 |
| 11 | 11 | 0.345 |
| 110 | 110 | 0.605 |
| 111 | 111 | 0.265 |
| 112 | 112 | 0.525 |
| 113 | 113 | 0.124 |
| 114 | 114 | 0.117 |
| 115 | 115 | 0.16 |
| 116 | 116 | 0.461 |
| 117 | 117 | 0.0264 |
| 118 | 118 | 0.32 |
| 119 | 119 | 0.861 |
| 12 | 12 | 0.276 |
| 120 | 120 | 0.943 |
| 121 | 121 | 0.564 |
| 122 | 122 | 0.48 |
| 123 | 123 | 0.0977 |
| 124 | 124 | 0.508 |
| 125 | 125 | 0.541 |
| 126 | 126 | 0.135 |
| 127 | 127 | 0.627 |
| 128 | 128 | 0.189 |
| 129 | 129 | 0.998 |
| 13 | 13 | 0.293 |
| 130 | 130 | 0.381 |
| 131 | 131 | 0.855 |
| 132 | 132 | 0.0317 |
| 133 | 133 | 0.358 |
| 134 | 134 | 0.976 |
| 135 | 135 | 0.337 |
| 136 | 136 | 0.681 |
| 137 | 137 | 9.61216e-4 |
| 138 | 138 | 0.316 |
| 139 | 139 | 0.0534 |
| 14 | 14 | 0.3 |
| 140 | 140 | 0.497 |
| 141 | 141 | 0.466 |
| 142 | 142 | 0.123 |
| 143 | 143 | 0.00149 |
| 144 | 144 | 0.683 |
| 145 | 145 | 0.546 |
| 146 | 146 | 0.854 |
| 147 | 147 | 0.231 |
| 148 | 148 | 0.111 |
| 149 | 149 | 0.764 |
| 15 | 15 | 0.139 |
| 150 | 150 | 0.652 |
| 151 | 151 | 0.147 |
| 152 | 152 | 0.932 |
| 153 | 153 | 0.688 |
| 154 | 154 | 0.4 |
| 155 | 155 | 0.379 |
| 156 | 156 | 0.536 |
| 157 | 157 | 0.657 |
| 158 | 158 | 0.0786 |
| 159 | 159 | 0.0321 |
| 16 | 16 | 0.909 |
| 160 | 160 | 0.717 |
| 161 | 161 | 0.873 |
| 162 | 162 | 0.0695 |
| 163 | 163 | 0.509 |
| 164 | 164 | 0.175 |
| 165 | 165 | 0.32 |
| 166 | 166 | 0.797 |
| 167 | 167 | 0.337 |
| 168 | 168 | 0.175 |
| 169 | 169 | 0.466 |
| 17 | 17 | 0.602 |
| 18 | 18 | 0.271 |
| 19 | 19 | 0.931 |
| 2 | 2 | 0.574 |
| 20 | 20 | 0.484 |
| 21 | 21 | 0.899 |
| 22 | 22 | 0.674 |
| 23 | 23 | 0.22 |
| 24 | 24 | 0.547 |
| 25 | 25 | 0.142 |
| 26 | 26 | 0.3 |
| 27 | 27 | 0.946 |
| 28 | 28 | 0.328 |
| 29 | 29 | 0.127 |
| 3 | 3 | 0.268 |
| 30 | 30 | 0.305 |
| 31 | 31 | 0.884 |
| 32 | 32 | 0.0726 |
| 33 | 33 | 0.424 |
| 34 | 34 | 0.825 |
| 35 | 35 | 0.12 |
| 36 | 36 | 0.0825 |
| 37 | 37 | 0.217 |
| 38 | 38 | 0.696 |
| 39 | 39 | 0.847 |
| 4 | 4 | 0.92 |
| 40 | 40 | 0.466 |
| 41 | 41 | 0.00334 |
| 42 | 42 | 0.283 |
| 43 | 43 | 0.0565 |
| 44 | 44 | 0.653 |
| 45 | 45 | 0.997 |
| 46 | 46 | 0.349 |
| 47 | 47 | 0.722 |
| 48 | 48 | 0.674 |
| 49 | 49 | 0.112 |
| 5 | 5 | 0.188 |
| 50 | 50 | 0.663 |
| 51 | 51 | 0.458 |
| 52 | 52 | 0.621 |
| 53 | 53 | 0.369 |
| 54 | 54 | 0.55 |
| 55 | 55 | 0.8 |
| 56 | 56 | 0.918 |
| 57 | 57 | 0.951 |
| 58 | 58 | 0.0955 |
| 59 | 59 | 0.725 |
| 6 | 6 | 0.936 |
| 60 | 60 | 0.119 |
| 61 | 61 | 0.332 |
| 62 | 62 | 0.0664 |
| 63 | 63 | 0.959 |
| 64 | 64 | 0.512 |
| 65 | 65 | 0.556 |
| 66 | 66 | 0.263 |
| 67 | 67 | 0.877 |
| 68 | 68 | 0.344 |
| 69 | 69 | 0.707 |
| 7 | 7 | 0.194 |
| 70 | 70 | 0.15 |
| 71 | 71 | 0.0466 |
| 72 | 72 | 0.302 |
| 73 | 73 | 0.378 |
| 74 | 74 | 0.137 |
| 75 | 75 | 0.0761 |
| 76 | 76 | 0.15 |
| 77 | 77 | 0.52 |
| 78 | 78 | 0.661 |
| 79 | 79 | 0.781 |
| 8 | 8 | 0.927 |
| 80 | 80 | 0.00511 |
| 81 | 81 | 0.43 |
| 82 | 82 | 0.373 |
| 83 | 83 | 0.0411 |
| 84 | 84 | 0.498 |
| 85 | 85 | 0.0837 |
| 86 | 86 | 0.0226 |
| 87 | 87 | 0.511 |
| 88 | 88 | 0.811 |
| 89 | 89 | 0.587 |
| 9 | 9 | 0.402 |
| 90 | 90 | 0.0759 |
| 91 | 91 | 0.483 |
| 92 | 92 | 0.381 |
| 93 | 93 | 0.177 |
| 94 | 94 | 0.0796 |
| 95 | 95 | 0.132 |
| 96 | 96 | 0.387 |
| 97 | 97 | 0.96 |
| 98 | 98 | 0.389 |
| 99 | 99 | 3.68457e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12563
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000212 human basophil heparinase treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
