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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008487
|DRA_sample_Accession=CAGE@SAMD00004961
|accession_numbers=CAGE;DRX008595;DRR009467;DRZ000892;DRZ002277;DRZ012242;DRZ013627
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0000149
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0000149
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:69985734..69985749,+!p2@MITF!2.36!230.36!MITF;;chr22:38380543..38380569,-!p1@SOX10!2.31!201.83!SOX10;;chr6:391743..391759,+!p1@IRF4!2.00!98.81!IRF4;;chr2:223163706..223163730,-!p1@PAX3!1.97!91.30!PAX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.84!109.93!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.82!79.29!TFAP2A;;chr2:239148671..239148686,-!p1@HES6!1.79!214.14!HES6;;chr10:35484053..35484076,+!p1@CREM!1.59!91.90!CREM;;chr15:42749722..42749739,-!p2@ZFP106!1.50!54.36!ZFP106;;chr6:10415484..10415508,-!p3@TFAP2A!1.50!30.63!TFAP2A;;chr16:67198683..67198698,+!p2@HSF4!1.47!28.53!HSF4;;chr3:69985792..69985803,+!p7@MITF!1.47!28.53!MITF;;chr9:102584262..102584276,+!p1@NR4A3!1.33!45.35!NR4A3;;chr16:67198633..67198671,+!p1@HSF4!1.28!18.02!HSF4;;chr17:59477233..59477263,+!p1@TBX2!1.24!50.16!TBX2;;chr6:10412576..10412599,-!p5@TFAP2A!1.23!15.92!TFAP2A;;chr17:46806035..46806059,-!p2@HOXB13!1.18!14.12!HOXB13;;chr17:46688334..46688385,-!p1@HOXB7!1.16!19.52!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!1.15!13.22!HOXB13;;chr1:25256756..25256774,-!p1@RUNX3!1.14!24.33!RUNX3;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr12:85673977..85674015,+!p1@ALX1!1.07!10.81!ALX1;;chr1:158985493..158985535,+!p4@IFI16!1.06!16.22!IFI16;;chr4:109089901..109089930,-!p3@LEF1!1.06!10.51!LEF1;;chr17:8027418..8027432,-!p1@HES7!1.06!10.51!HES7;;chr17:46682321..46682362,-!p1@HOXB6!1.05!10.21!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.21!HOXC5;;chr6:15401104..15401166,+!p5@JARID2!1.04!9.91!JARID2;;chr2:96012757..96012779,+!p8@KCNIP3!1.04!9.91!KCNIP3;;chr17:59477275..59477286,+!p3@TBX2!1.03!12.91!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.00!10.21!TFAP2A;;chr10:35484090..35484104,+!p6@CREM!0.97!8.41!CREM;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.12!TBX2;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.11!HOXD8;;chr12:85674018..85674039,+!p3@ALX1!0.96!8.11!ALX1;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.11!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.01!AEBP1;;chr2:96012397..96012417,+!p3@KCNIP3!0.93!7.51!KCNIP3;;chr5:321810..321877,+!p1@AHRR!0.89!22.23!AHRR;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.61!AEBP1;;chr12:54447599..54447630,+!p3@HOXC4!0.88!8.11!HOXC4;;chr12:85673868..85673881,+!p2@ALX1!0.88!6.61!ALX1;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.61!ZFY;;chr10:111987079..111987115,+!p3@MXI1!0.86!8.71!MXI1;;chr9:102584241..102584261,+!p4@NR4A3!0.85!9.61!NR4A3;;chr12:54380404..54380433,+!p3@HOXC10!0.85!6.01!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.83!5.71!HOXC9;;chr7:5111723..5111807,+!p2@RBAK!0.83!5.71!RBAK;;chr19:57946684..57946723,+!p1@ZNF749!0.82!66.08!ZNF749;;chr11:12696071..12696086,+!p3@TEAD1!0.82!7.51!TEAD1;;chr12:54379477..54379498,+!p5@HOXC5!0.81!5.41!HOXC5;;chr6:10415263..10415274,-!p8@TFAP2A!0.81!5.41!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.41!HOXA9;;chr2:5832508..5832524,+!p1@SOX11!0.81!5.41!SOX11;;chr8:22550982..22550999,-!p1@EGR3!0.79!15.62!EGR3;;chr12:54447637..54447659,+!p4@HOXC4!0.79!5.11!HOXC4;;chr17:46806016..46806029,-!p5@HOXB13!0.79!5.11!HOXB13;;chr2:96012353..96012378,+!p4@KCNIP3!0.79!5.11!KCNIP3;;chr1:63788229..63788250,+!p1@FOXD3!0.79!5.11!FOXD3;;chr16:54964740..54964789,+!p1@IRX5!0.78!7.51!IRX5;;chr7:44143997..44144008,+!p3@AEBP1!0.78!6.61!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.78!6.61!TFAP2C;;chr8:49833978..49833996,-!p1@SNAI2!0.77!110.83!SNAI2;;chr17:46688310..46688323,-!p4@HOXB7!0.76!4.81!HOXB7;;chr11:125034605..125034636,+!p2@PKNOX2!0.76!4.81!PKNOX2;;chr12:54380036..54380091,+!p4@HOXC10!0.76!4.81!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.81!HOXC9;;chr1:935398..935465,-!p2@HES4!0.75!10.21!HES4;;chr20:62680984..62680999,-!p1@SOX18!0.75!6.31!SOX18;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.54!SNAI2;;chr8:22550530..22550609,-!p2@EGR3!0.74!4.51!EGR3;;chr9:102584278..102584285,+!p5@NR4A3!0.74!4.51!NR4A3;;chr8:128748308..128748324,+!p2@MYC!0.72!134.25!MYC;;chr11:47236584..47236679,+!p1@DDB2!0.72!52.26!DDB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.72!4.20!HOXC5;;chr14:64761083..64761101,-!p1@ESR2!0.72!4.20!ESR2;;chr17:46690839..46690884,-!p1@HOXB8!0.72!4.20!HOXB8;;chr17:46806098..46806118,-!p3@HOXB13!0.72!4.20!HOXB13;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.20!EN2;;chr4:109090075..109090095,-!p2@LEF1!0.72!4.20!LEF1;;chr11:128392273..128392308,-!p2@ETS1!0.71!19.52!ETS1;;chr8:37553292..37553317,+!p1@ZNF703!0.70!108.12!ZNF703;;chr12:52431016..52431071,+!p4@NR4A1!0.70!4.81!NR4A1;;chr11:47279504..47279563,+!p1@NR1H3!0.69!9.61!NR1H3;;chr1:204042723..204042784,+!p3@SOX13!0.69!6.91!SOX13;;chr13:46626794..46626801,-!p17@ZC3H13!0.69!3.90!ZC3H13;;chr14:21566731..21566836,-!p1@ZNF219!0.67!45.95!ZNF219;;chr12:52445218..52445237,+!p1@NR4A1!0.66!52.56!NR4A1;;chr9:102584128..102584144,+!p3@NR4A3!0.66!7.51!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.66!6.91!NR4A3;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.60!HOXD3;;chr4:109088940..109089037,-!p4@LEF1!0.66!3.60!LEF1;;chr11:125034586..125034604,+!p3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 42:
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12739-135I3
|fonse_treatment_closure=FF:0000343,FF:0000730,FF:12739-135I3
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor2%2520%2528MC%252b2%2529.CNhs13156.12739-135I3.hg38.nobarcode.ctss.bed.gz
|id=FF:12739-135I3
|id=FF:12739-135I3
|is_a=CL:0000149;;EFO:0002091;;FF:0000730
|is_a=CL:0000149;;EFO:0002091;;FF:0000730
|is_obsolete=
|is_obsolete=
|library_ids=CNhs13156
|library_id=CNhs13156
|library_id_phase_based=2:CNhs13156
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12739
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12739
|name=Melanocyte, donor2 (MC+2)
|name=Melanocyte, donor2 (MC+2)
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13156,LSID1002,release013,COMPLETED
|profile_hcage=CNhs13156,LSID1002,release013,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 63: Line 77:
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|sample_category=time courses
Line 85: Line 99:
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|sample_tissue=skin
|timecourse=Melanocytic_differentiation
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.73950338843;HOX{A6,A7,B6,B7}:2.47473681932;ESRRA:2.24631200202;PAX6:1.97017111398;EN1,2:1.87094176053;NR3C1:1.74730171199;SREBF1,2:1.6210843987;POU3F1..4:1.44069489136;HOX{A4,D4}:1.31788010294;RXR{A,B,G}:1.29699880717;ZNF423:1.17902550642;bHLH_family:1.16600226107;NFE2L1:1.11520229325;NR5A1,2:1.07760055685;FOXQ1:1.00504475472;NANOG:0.953505105866;HES1:0.933203243989;XCPE1{core}:0.896147582025;TFDP1:0.852986757696;E2F1..5:0.790141146667;OCT4_SOX2{dimer}:0.771382209321;PAX8:0.760487830521;POU1F1:0.755597261527;CDC5L:0.748030892729;PAX1,9:0.710633425076;LHX3,4:0.689073010984;ALX4:0.602234427323;GFI1:0.549786456572;EVI1:0.546961076497;VSX1,2:0.543862045674;TP53:0.531983579181;NKX3-1:0.494844341177;HNF4A_NR2F1,2:0.466244940751;ZNF143:0.464678033241;EP300:0.461147070262;ALX1:0.452641761481;FOX{F1,F2,J1}:0.445334440381;NFY{A,B,C}:0.432121902053;PBX1:0.420399844507;HOXA9_MEIS1:0.415798480855;HSF1,2:0.392695167896;NFIX:0.377622632053;FOXL1:0.368527503537;NKX2-3_NKX2-5:0.31577901536;FOXD3:0.298362161366;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282922455216;PRRX1,2:0.265443143991;STAT1,3:0.261619895868;NKX6-1,2:0.248218451463;SOX{8,9,10}:0.243679269059;ELK1,4_GABP{A,B1}:0.210966860095;UFEwm:0.196220664647;ARID5B:0.195892288468;TLX1..3_NFIC{dimer}:0.187389854081;SPZ1:0.176168180024;NKX2-2,8:0.165172309417;MYBL2:0.156095937411;DMAP1_NCOR{1,2}_SMARC:0.139734015742;JUN:0.1371669953;ESR1:0.13556677626;TEF:0.1349405724;XBP1:0.127315967728;HBP1_HMGB_SSRP1_UBTF:0.116958314203;YY1:0.113323110694;TFCP2:0.0996592096016;HAND1,2:0.0710507933417;EBF1:0.0646545377798;CUX2:0.0469795976354;NRF1:0.0427555341151;RFX2..5_RFXANK_RFXAP:0.0358859149415;REST:0.0287745799039;ZNF238:0.00221105910692;GFI1B:-0.0188515367163;PAX4:-0.0361932955362;CRX:-0.042489006794;ZBTB6:-0.0454527252208;LMO2:-0.0529165599654;SOX17:-0.0588685940525;MYB:-0.0641328877413;ONECUT1,2:-0.0654953033862;SOX5:-0.0702992633105;BACH2:-0.0766314724565;GTF2A1,2:-0.0824961986979;SOX2:-0.0831328730068;ZNF148:-0.0962377085372;NKX3-2:-0.102654640489;HNF1A:-0.115445400476;AR:-0.132983989555;PAX5:-0.134456318548;HIC1:-0.15628461586;AIRE:-0.157167599642;NFIL3:-0.1785303514;RFX1:-0.178894650229;FOXM1:-0.180200093636;FOSL2:-0.181907402388;GCM1,2:-0.203024352859;CDX1,2,4:-0.210001625639;GLI1..3:-0.211525340581;SPIB:-0.232527399743;HOX{A5,B5}:-0.234147148324;IRF7:-0.236454772621;RUNX1..3:-0.240867026419;NHLH1,2:-0.24171289926;FOXA2:-0.243838921116;CEBPA,B_DDIT3:-0.253836502458;RORA:-0.257707107968;POU2F1..3:-0.258801977559;KLF4:-0.273490893828;ELF1,2,4:-0.274927029128;TEAD1:-0.276748510149;TOPORS:-0.289747450175;POU6F1:-0.295676842788;NR1H4:-0.29921390507;FOS_FOS{B,L1}_JUN{B,D}:-0.311267237146;SPI1:-0.320811055463;PAX2:-0.325533398835;ADNP_IRX_SIX_ZHX:-0.328518698873;FOXP3:-0.334845023285;TAL1_TCF{3,4,12}:-0.338253988907;IRF1,2:-0.339827299278;SP1:-0.349149741961;GTF2I:-0.351965814402;MEF2{A,B,C,D}:-0.366515436859;NFE2:-0.371589561108;ZIC1..3:-0.37726683201;LEF1_TCF7_TCF7L1,2:-0.429417268308;RXRA_VDR{dimer}:-0.436258711054;ZNF384:-0.451540500443;FOX{I1,J2}:-0.455480654421;HMGA1,2:-0.456279341104;BPTF:-0.469448689625;IKZF2:-0.475299716157;ATF4:-0.47853474998;SNAI1..3:-0.481026137144;TLX2:-0.485879682702;ATF2:-0.4970569467;PPARG:-0.50423115368;ETS1,2:-0.511974611432;NFKB1_REL_RELA:-0.513802482826;IKZF1:-0.515392324822;NFE2L2:-0.524039731527;CREB1:-0.528013919072;FOX{D1,D2}:-0.529078417157;GATA6:-0.535334274584;FOXO1,3,4:-0.551376936028;FOXP1:-0.572614545411;ZEB1:-0.594204075284;ATF5_CREB3:-0.60759240543;ZBTB16:-0.61716000507;HLF:-0.623741334868;SMAD1..7,9:-0.628290530837;STAT5{A,B}:-0.646050643714;MAFB:-0.651146934347;STAT2,4,6:-0.659673681316;NR6A1:-0.666191527155;PITX1..3:-0.668870967874;HMX1:-0.676169260881;GATA4:-0.709169162315;RREB1:-0.711467470924;PRDM1:-0.713906525417;MTF1:-0.714071412495;GZF1:-0.722005384093;RBPJ:-0.724123339656;ZFP161:-0.725362181732;NKX2-1,4:-0.727739753501;MYOD1:-0.734256887922;MAZ:-0.742647163898;BREu{core}:-0.757557096525;PDX1:-0.791231844836;MED-1{core}:-0.8012409584;TFAP2B:-0.812227897263;NFATC1..3:-0.853856554362;AHR_ARNT_ARNT2:-0.868210850885;TBP:-0.869563497561;NANOG{mouse}:-0.936547167256;EGR1..3:-0.943716312038;TFAP2{A,C}:-0.954298230896;SRF:-0.991046879742;TFAP4:-1.001385955;TGIF1:-1.01597718396;FOXN1:-1.049402255;ATF6:-1.04965230844;DBP:-1.05783149392;PAX3,7:-1.10716148854;MTE{core}:-1.14573675324;PATZ1:-1.17004755612;MYFfamily:-1.18584681671;MZF1:-1.22037682385;POU5F1:-1.25632093099;HIF1A:-1.4090121641;TBX4,5:-1.52366617443;T:-1.7393045767
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.73950338843;HOX{A6,A7,B6,B7}:2.47473681932;ESRRA:2.24631200202;PAX6:1.97017111398;EN1,2:1.87094176053;NR3C1:1.74730171199;SREBF1,2:1.6210843987;POU3F1..4:1.44069489136;HOX{A4,D4}:1.31788010294;RXR{A,B,G}:1.29699880717;ZNF423:1.17902550642;bHLH_family:1.16600226107;NFE2L1:1.11520229325;NR5A1,2:1.07760055685;FOXQ1:1.00504475472;NANOG:0.953505105866;HES1:0.933203243989;XCPE1{core}:0.896147582025;TFDP1:0.852986757696;E2F1..5:0.790141146667;OCT4_SOX2{dimer}:0.771382209321;PAX8:0.760487830521;POU1F1:0.755597261527;CDC5L:0.748030892729;PAX1,9:0.710633425076;LHX3,4:0.689073010984;ALX4:0.602234427323;GFI1:0.549786456572;EVI1:0.546961076497;VSX1,2:0.543862045674;TP53:0.531983579181;NKX3-1:0.494844341177;HNF4A_NR2F1,2:0.466244940751;ZNF143:0.464678033241;EP300:0.461147070262;ALX1:0.452641761481;FOX{F1,F2,J1}:0.445334440381;NFY{A,B,C}:0.432121902053;PBX1:0.420399844507;HOXA9_MEIS1:0.415798480855;HSF1,2:0.392695167896;NFIX:0.377622632053;FOXL1:0.368527503537;NKX2-3_NKX2-5:0.31577901536;FOXD3:0.298362161366;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.282922455216;PRRX1,2:0.265443143991;STAT1,3:0.261619895868;NKX6-1,2:0.248218451463;SOX{8,9,10}:0.243679269059;ELK1,4_GABP{A,B1}:0.210966860095;UFEwm:0.196220664647;ARID5B:0.195892288468;TLX1..3_NFIC{dimer}:0.187389854081;SPZ1:0.176168180024;NKX2-2,8:0.165172309417;MYBL2:0.156095937411;DMAP1_NCOR{1,2}_SMARC:0.139734015742;JUN:0.1371669953;ESR1:0.13556677626;TEF:0.1349405724;XBP1:0.127315967728;HBP1_HMGB_SSRP1_UBTF:0.116958314203;YY1:0.113323110694;TFCP2:0.0996592096016;HAND1,2:0.0710507933417;EBF1:0.0646545377798;CUX2:0.0469795976354;NRF1:0.0427555341151;RFX2..5_RFXANK_RFXAP:0.0358859149415;REST:0.0287745799039;ZNF238:0.00221105910692;GFI1B:-0.0188515367163;PAX4:-0.0361932955362;CRX:-0.042489006794;ZBTB6:-0.0454527252208;LMO2:-0.0529165599654;SOX17:-0.0588685940525;MYB:-0.0641328877413;ONECUT1,2:-0.0654953033862;SOX5:-0.0702992633105;BACH2:-0.0766314724565;GTF2A1,2:-0.0824961986979;SOX2:-0.0831328730068;ZNF148:-0.0962377085372;NKX3-2:-0.102654640489;HNF1A:-0.115445400476;AR:-0.132983989555;PAX5:-0.134456318548;HIC1:-0.15628461586;AIRE:-0.157167599642;NFIL3:-0.1785303514;RFX1:-0.178894650229;FOXM1:-0.180200093636;FOSL2:-0.181907402388;GCM1,2:-0.203024352859;CDX1,2,4:-0.210001625639;GLI1..3:-0.211525340581;SPIB:-0.232527399743;HOX{A5,B5}:-0.234147148324;IRF7:-0.236454772621;RUNX1..3:-0.240867026419;NHLH1,2:-0.24171289926;FOXA2:-0.243838921116;CEBPA,B_DDIT3:-0.253836502458;RORA:-0.257707107968;POU2F1..3:-0.258801977559;KLF4:-0.273490893828;ELF1,2,4:-0.274927029128;TEAD1:-0.276748510149;TOPORS:-0.289747450175;POU6F1:-0.295676842788;NR1H4:-0.29921390507;FOS_FOS{B,L1}_JUN{B,D}:-0.311267237146;SPI1:-0.320811055463;PAX2:-0.325533398835;ADNP_IRX_SIX_ZHX:-0.328518698873;FOXP3:-0.334845023285;TAL1_TCF{3,4,12}:-0.338253988907;IRF1,2:-0.339827299278;SP1:-0.349149741961;GTF2I:-0.351965814402;MEF2{A,B,C,D}:-0.366515436859;NFE2:-0.371589561108;ZIC1..3:-0.37726683201;LEF1_TCF7_TCF7L1,2:-0.429417268308;RXRA_VDR{dimer}:-0.436258711054;ZNF384:-0.451540500443;FOX{I1,J2}:-0.455480654421;HMGA1,2:-0.456279341104;BPTF:-0.469448689625;IKZF2:-0.475299716157;ATF4:-0.47853474998;SNAI1..3:-0.481026137144;TLX2:-0.485879682702;ATF2:-0.4970569467;PPARG:-0.50423115368;ETS1,2:-0.511974611432;NFKB1_REL_RELA:-0.513802482826;IKZF1:-0.515392324822;NFE2L2:-0.524039731527;CREB1:-0.528013919072;FOX{D1,D2}:-0.529078417157;GATA6:-0.535334274584;FOXO1,3,4:-0.551376936028;FOXP1:-0.572614545411;ZEB1:-0.594204075284;ATF5_CREB3:-0.60759240543;ZBTB16:-0.61716000507;HLF:-0.623741334868;SMAD1..7,9:-0.628290530837;STAT5{A,B}:-0.646050643714;MAFB:-0.651146934347;STAT2,4,6:-0.659673681316;NR6A1:-0.666191527155;PITX1..3:-0.668870967874;HMX1:-0.676169260881;GATA4:-0.709169162315;RREB1:-0.711467470924;PRDM1:-0.713906525417;MTF1:-0.714071412495;GZF1:-0.722005384093;RBPJ:-0.724123339656;ZFP161:-0.725362181732;NKX2-1,4:-0.727739753501;MYOD1:-0.734256887922;MAZ:-0.742647163898;BREu{core}:-0.757557096525;PDX1:-0.791231844836;MED-1{core}:-0.8012409584;TFAP2B:-0.812227897263;NFATC1..3:-0.853856554362;AHR_ARNT_ARNT2:-0.868210850885;TBP:-0.869563497561;NANOG{mouse}:-0.936547167256;EGR1..3:-0.943716312038;TFAP2{A,C}:-0.954298230896;SRF:-0.991046879742;TFAP4:-1.001385955;TGIF1:-1.01597718396;FOXN1:-1.049402255;ATF6:-1.04965230844;DBP:-1.05783149392;PAX3,7:-1.10716148854;MTE{core}:-1.14573675324;PATZ1:-1.17004755612;MYFfamily:-1.18584681671;MZF1:-1.22037682385;POU5F1:-1.25632093099;HIF1A:-1.4090121641;TBX4,5:-1.52366617443;T:-1.7393045767
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12739-135I3;search_select_hide=table117:FF:12739-135I3
|DRA_sample_Accession=CAGE@DRS008487
|accession_numbers=DRX008595;DRR009467;DRZ000892;DRZ002277;CAGE
|library_id=CNhs13156
}}
}}

Latest revision as of 18:43, 4 June 2020

Name:Melanocyte, donor2 (MC+2)
Species:Human (Homo sapiens)
Library ID:CNhs13156
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
ageNA
cell typemelanocyte
cell lineNA
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004961
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13156 CAGE DRX008595 DRR009467
Accession ID Hg19

Library idBAMCTSS
CNhs13156 DRZ000892 DRZ002277
Accession ID Hg38

Library idBAMCTSS
CNhs13156 DRZ012242 DRZ013627
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.377
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.171
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle7.747321e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.114
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.374
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.634
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.457
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.387
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.807
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.108
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.398
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13156

Jaspar motifP-value
MA0002.20.769
MA0003.10.529
MA0004.12.49125e-4
MA0006.10.707
MA0007.10.0667
MA0009.10.994
MA0014.10.281
MA0017.10.0451
MA0018.20.276
MA0019.10.88
MA0024.11.62988e-4
MA0025.10.0366
MA0027.10.869
MA0028.10.0255
MA0029.10.376
MA0030.10.0169
MA0031.10.132
MA0035.20.365
MA0038.10.201
MA0039.20.0896
MA0040.10.556
MA0041.10.914
MA0042.10.311
MA0043.12.70268e-6
MA0046.10.0371
MA0047.20.251
MA0048.10.427
MA0050.10.104
MA0051.10.485
MA0052.10.123
MA0055.11.53996e-4
MA0057.10.246
MA0058.14.18988e-7
MA0059.11.17419e-4
MA0060.10.00758
MA0061.10.163
MA0062.20.0238
MA0065.26.55967e-4
MA0066.10.0485
MA0067.10.0922
MA0068.10.0387
MA0069.10.133
MA0070.10.205
MA0071.10.482
MA0072.10.107
MA0073.10.566
MA0074.10.0953
MA0076.10.116
MA0077.10.357
MA0078.10.689
MA0079.20.894
MA0080.23.8959e-4
MA0081.10.585
MA0083.11.9787e-4
MA0084.10.99
MA0087.10.284
MA0088.10.00322
MA0090.10.468
MA0091.10.176
MA0092.10.612
MA0093.16.54174e-5
MA0099.20.00621
MA0100.10.432
MA0101.10.0434
MA0102.23.33781e-4
MA0103.10.536
MA0104.20.00398
MA0105.10.328
MA0106.10.0282
MA0107.10.00222
MA0108.22.02466e-6
MA0111.10.524
MA0112.20.0608
MA0113.10.909
MA0114.10.00517
MA0115.10.02
MA0116.10.0778
MA0117.10.232
MA0119.10.364
MA0122.10.864
MA0124.10.43
MA0125.10.193
MA0131.10.543
MA0135.10.237
MA0136.10.00392
MA0137.20.232
MA0138.20.429
MA0139.10.395
MA0140.10.546
MA0141.10.00379
MA0142.10.918
MA0143.10.727
MA0144.10.194
MA0145.10.573
MA0146.10.0259
MA0147.10.00709
MA0148.10.611
MA0149.10.0149
MA0150.10.0135
MA0152.10.981
MA0153.10.989
MA0154.10.207
MA0155.10.717
MA0156.10.164
MA0157.10.491
MA0159.10.019
MA0160.10.286
MA0162.10.165
MA0163.10.00459
MA0164.10.187
MA0258.10.0495
MA0259.10.115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13156

Novel motifP-value
10.0155
100.218
1000.0206
1010.897
1020.181
1030.00724
1040.441
1050.677
1060.782
1070.538
1080.382
1090.00366
110.0205
1100.00107
1110.79
1120.614
1130.0206
1140.393
1150.939
1160.523
1170.0697
1180.0763
1190.952
120.539
1200.275
1210.652
1220.903
1230.206
1240.333
1250.261
1260.748
1270.889
1280.206
1290.147
130.013
1300.458
1310.0758
1320.758
1330.246
1340.47
1350.995
1360.0246
1370.983
1380.515
1390.0314
140.644
1400.253
1410.326
1420.383
1430.551
1440.391
1450.202
1460.0256
1470.984
1480.284
1490.697
150.342
1500.883
1510.365
1520.235
1530.318
1540.326
1550.886
1560.999
1570.866
1580.124
1590.202
160.0271
1600.311
1610.852
1620.215
1630.362
1640.45
1650.588
1660.207
1670.339
1680.422
1690.1
170.251
180.15
190.514
20.599
200.37
210.457
220.18
230.438
240.635
250.72
260.121
270.353
280.839
290.00618
30.24
300.254
310.281
320.289
330.362
340.803
350.825
360.0367
370.098
380.709
390.415
40.385
400.0204
410.901
420.819
430.419
440.0468
450.6
460.0892
470.026
480.0937
490.773
50.399
500.367
510.379
520.695
530.452
540.787
550.51
560.717
570.0467
580.206
590.643
60.0287
600.99
610.116
620.291
630.17
640.158
650.573
660.0683
670.553
680.241
690.103
70.515
700.431
710.0717
720.957
730.019
740.908
750.173
760.249
770.225
780.949
790.595
80.0193
800.79
810.544
820.626
830.176
840.885
850.531
860.869
870.00222
880.951
890.168
90.898
900.00783
910.666
920.142
930.0563
940.13
950.00107
960.882
970.368
980.0452
990.0461



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13156


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0000149 (visual pigment cell)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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