FF:12823-136I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005541 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008585;DRR009457;DRZ000882;DRZ002267;DRZ012232;DRZ013617 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000034,CL:0000148,CL:0002322 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101581,FF:0000350,FF:0000334,FF:0000380,FF:0000400,FF:0100669,FF:0000532 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= biol_rep3 (H9EB-3 d0) | |||
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.62!838.46!DNMT3B;;chr3:181429704..181429722,+!p1@SOX2!2.21!161.23!SOX2;;chr10:135043702..135043729,+!p1@UTF1!2.18!150.64!UTF1;;chr8:128428066..128428078,+!p1@POU5F1B!2.06!113.54!POU5F1B;;chr8:145701192..145701241,-!p1@FOXH1!2.04!108.75!FOXH1;;chr8:73921136..73921151,+!p2@TERF1!2.03!155.68!TERF1;;chr6:31138439..31138475,-!p1@POU5F1!1.96!90.08!POU5F1;;chr4:188916918..188916942,+!p1@ZFP42!1.96!89.57!ZFP42;;chr1:6304233..6304243,+!p1@HES3!1.91!80.49!HES3;;chr8:70983476..70983493,-!p1@PRDM14!1.89!77.21!PRDM14;;chr14:57272369..57272391,-!p2@OTX2!1.79!60.56!OTX2;;chrX:136648279..136648295,+!p1@ZIC3!1.76!57.02!ZIC3;;chr16:3149278..3149305,-!p1@ZSCAN10!1.74!54.00!ZSCAN10;;chr13:100634031..100634045,+!p1@ZIC2!1.67!45.42!ZIC2;;chr2:16080659..16080685,+!p1@MYCN!1.64!43.15!MYCN;;chr6:137815524..137815537,-!p1@OLIG3!1.64!42.89!OLIG3;;chr2:5832508..5832524,+!p1@SOX11!1.64!42.39!SOX11;;chr20:50418972..50419029,-!p1@SALL4!1.63!41.89!SALL4;;chrX:136648643..136648711,+!p2@ZIC3!1.57!35.83!ZIC3;;chr3:181429741..181429767,+!p2@SOX2!1.54!33.31!SOX2;;chr19:20188776..20188826,+!p1@ZNF90!1.53!86.04!ZNF90;;chr13:100623375..100623425,-!p1@ZIC5!1.53!32.80!ZIC5;;chr5:2751762..2751784,-!p1@IRX2!1.53!32.55!IRX2;;chr11:63684602..63684664,-!p1@RCOR2!1.52!61.82!RCOR2;;chr12:7941989..7942014,+!p1@NANOG!1.48!29.02!NANOG;;chr10:135043493..135043510,+!p2@UTF1!1.45!27.00!UTF1;;chr1:164528687..164528711,+!p6@PBX1!1.44!30.78!PBX1;;chr9:114287433..114287513,+!p1@ZNF483!1.43!66.36!ZNF483;;chr2:25475094..25475112,-!p3@DNMT3A!1.42!25.48!DNMT3A;;chr20:50419055..50419066,-!p3@SALL4!1.41!24.98!SALL4;;chr2:16081912..16081931,+!p2@MYCN!1.41!24.48!MYCN;;chr2:25475120..25475176,-!p2@DNMT3A!1.39!31.79!DNMT3A;;chr14:22005197..22005261,-!p3@SALL2!1.39!23.72!SALL2;;chr6:15246200..15246214,+!p2@JARID2!1.38!61.82!JARID2;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!1.36!27.76!TFAP2C;;chr1:63788229..63788250,+!p1@FOXD3!1.36!21.70!FOXD3;;chr5:2751785..2751808,-!p2@IRX2!1.35!21.45!IRX2;;chr2:88752207..88752218,-!p1@FOXI3!1.34!20.69!FOXI3;;chr12:7942020..7942031,+!p2@NANOG!1.34!20.69!NANOG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.19!ZBED1;;chr10:70320074..70320106,+!p1@TET1!1.32!39.36!TET1;;chr3:170076314..170076334,+!p2@SKIL!1.31!25.48!SKIL;;chr1:201979703..201979721,+!p2@ELF3!1.31!19.43!ELF3;;chr8:145701166..145701187,-!p2@FOXH1!1.28!17.91!FOXH1;;chr4:299227..299272,-!p1@ZNF732!1.27!17.41!ZNF732;;chr1:201979743..201979762,+!p1@ELF3!1.26!17.16!ELF3;;chr20:50418128..50418147,-!p2@SALL4!1.26!17.16!SALL4;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.25!23.72!TGIF2;;chr18:56531584..56531646,+!p4@ZNF532!1.25!21.95!ZNF532;;chr3:57234000..57234014,-!p1@HESX1!1.24!16.40!HESX1;;chr17:47892398..47892407,+!p2@KAT7!1.22!15.64!KAT7;;chr12:66218183..66218209,+!p4@HMGA2!1.21!28.76!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!1.21!15.39!ZIC2;;chr8:70983506..70983522,-!p3@PRDM14!1.21!15.14!PRDM14;;chr19:20011775..20011800,+!p2@ZNF93!1.20!26.24!ZNF93;;chr19:46800289..46800327,+!p2@HIF3A!1.20!14.89!HIF3A;;chrX:139587228..139587234,-!p1@SOX3!1.20!14.89!SOX3;;chr18:56530136..56530199,+!p3@ZNF532!1.18!21.19!ZNF532;;chr8:70983443..70983460,-!p2@PRDM14!1.18!14.13!PRDM14;;chr8:73921067..73921078,+!p3@TERF1!1.16!21.19!TERF1;;chrX:136648297..136648319,+!p3@ZIC3!1.16!13.37!ZIC3;;chr1:24645832..24645853,+!p1@GRHL3!1.16!13.37!GRHL3;;chr12:66218836..66218888,+!p1@HMGA2!1.15!120.36!HMGA2;;chr3:185797712..185797746,-!p6@ETV5!1.15!13.12!ETV5;;chr17:46132044..46132080,+!p4@NFE2L1!1.15!13.12!NFE2L1;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.43!ETV4;;chr3:71355163..71355209,-!p5@FOXP1!1.14!17.66!FOXP1;;chr8:37963466..37963506,+!p3@ASH2L!1.14!16.15!ASH2L;;chr19:45579725..45579743,-!p1@ZNF296!1.13!56.27!ZNF296;;chr19:46367576..46367592,+!p1@FOXA3!1.13!12.62!FOXA3;;chr11:128457446..128457461,-!p4@ETS1!1.12!12.11!ETS1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.11!26.24!SOHLH2;;chr14:57277178..57277203,-!p1@OTX2!1.11!11.86!OTX2;;chr13:100638100..100638115,+!p4@ZIC2!1.10!11.61!ZIC2;;chr2:16082155..16082169,+!p3@MYCN!1.10!11.61!MYCN;;chr19:23433144..23433204,-!p1@ZNF724P!1.09!51.47!ZNF724P;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.06!15.39!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!1.05!1144.02!HMGA1;;chr2:42795745..42795824,+!p1@MTA3!1.05!96.39!MTA3;;chr3:48282587..48282603,+!p1@ZNF589!1.05!46.43!ZNF589;;chr19:23299814..23299844,+!p1@ZNF730!1.05!12.62!ZNF730;;chr22:38380543..38380569,-!p1@SOX10!1.05!10.35!SOX10;;chr10:126138597..126138612,-!p1@NKX1-2!1.05!10.09!NKX1-2;;chr9:127533519..127533573,-!p2@NR6A1!1.04!12.11!NR6A1;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.14!HMGA2;;chr14:21994337..21994442,-!p1@SALL2!1.00!25.48!SALL2;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.63!MAZ;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.83!PAX3;;chr2:5832493..5832507,+!p2@SOX11!0.99!8.83!SOX11;;chr19:48773337..48773339,+!p2@ZNF114!0.99!8.83!ZNF114;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.63!TCF12;;chr16:51185363..51185381,-!p4@SALL1!0.98!8.58!SALL1;;chr2:171571827..171571853,+!p1@SP5!0.98!8.58!SP5;;chr19:47523058..47523114,+!p1@NPAS1!0.97!8.33!NPAS1;;chr19:50922187..50922204,+!p1@SPIB!0.97!8.33!SPIB;;chr19:20011744..20011770,+!p1@ZNF93!0.95!32.04!ZNF93;;chr19:58341656..58341694,+!p5@ZNF587!0.95!9.59!ZNF587;;chr8:102504651..102504683,+!p1@GRHL2!0.95!7.82!GRHL2;;chr8:55370487..55370503,+!p1@SOX17!0.95!7.82!SOX17;;chr6:15246217..15246228,+!p3@JARID2!0.94!13.88!JARID2;;chr1:151032922..151032951,+!p2@MLLT11!0.94!13.12!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.94!12.11!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.93!45.92!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!0.93!33.56!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!0.93!7.57!FOXN3;;chr5:153857778..153857794,-!p1@HAND1!0.93!7.57!HAND1;;chr6:21593973..21593988,+!p1@SOX4!0.92!275.28!SOX4;;chr12:66218152..66218174,+!p10@HMGA2!0.92!7.82!HMGA2;;chr13:100634130..100634143,+!p3@ZIC2!0.92!7.32!ZIC2;;chr12:7079780..7079791,-!p2@PHB2!0.91!39.36!PHB2;;chr6:50786591..50786614,+!p1@TFAP2B!0.91!7.06!TFAP2B;;chr19:23299851..23299880,+!p2@ZNF730!0.91!7.06!ZNF730;;chr9:127358120..127358170,-!p3@NR6A1!0.91!7.06!NR6A1;;chr6:15245797..15245818,+!p8@JARID2!0.90!8.58!JARID2;;chr12:19592405..19592492,+!p2@AEBP2!0.89!61.31!AEBP2;;chr1:204042233..204042249,+!p1@SOX13!0.89!44.91!SOX13;;chr12:3068544..3068597,+!p1@TEAD4!0.89!42.14!TEAD4;;chr7:26191809..26191890,+!p1@NFE2L3!0.89!35.32!NFE2L3;;chr10:8096631..8096660,+!p1@GATA3!0.89!8.33!GATA3;;chr11:120107344..120107351,+!p1@POU2F3!0.89!8.33!POU2F3;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.82!HEY2;;chr10:135043690..135043701,+!p4@UTF1!0.89!6.81!UTF1;;chr4:26322267..26322334,+!p3@RBPJ!0.88!16.40!RBPJ;;chr2:121493425..121493474,+!p1@GLI2!0.88!15.14!GLI2;;chr19:21265028..21265052,+!p2@ZNF714!0.88!12.11!ZNF714;;chr10:135051353..135051367,+!p1@VENTX!0.88!6.56!VENTX;;chr20:31368212..31368235,+!p2@DNMT3B!0.88!6.56!DNMT3B;;chr2:16080635..16080650,+!p4@MYCN!0.88!6.56!MYCN;;chr2:88752231..88752245,-!p2@FOXI3!0.88!6.56!FOXI3;;chr20:30193083..30193098,+!p1@ID1!0.87!552.33!ID1;;chr19:21264991..21265026,+!p1@ZNF714!0.87!44.16!ZNF714;;chr19:23941647..23941672,-!p2@ZNF681!0.87!10.85!ZNF681;;chr12:54785074..54785122,-!p2@ZNF385A!0.87!10.09!ZNF385A;;chr2:85360499..85360598,+!p1@TCF7L1!0.86!37.09!TCF7L1;;chr12:66218443..66218461,+!p8@HMGA2!0.86!8.07!HMGA2;;chr10:135122906..135122921,+!p4@ZNF511!0.86!6.31!ZNF511;;chr17:7580758..7580773,-!p20@TP53!0.86!6.31!TP53;;chr20:55205791..55205817,+!p3@TFAP2C!0.86!6.31!TFAP2C;;chr4:111544219..111544240,-!p1@PITX2!0.86!6.31!PITX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.85!10.35!FOXQ1;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.57!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!0.85!6.06!DLX5;;chr8:40755333..40755352,-!p1@ZMAT4!0.85!6.06!ZMAT4;;chr19:3574330..3574393,+!p2@HMG20B!0.85!6.06!HMG20B;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.06!GRHL3;;chrX:136650899..136650918,+!p7@ZIC3!0.85!6.06!ZIC3;;chr16:29818160..29818188,+!p6@MAZ!0.84!29.52!MAZ;;chr8:37963407..37963454,+!p2@ASH2L!0.84!18.67!ASH2L;;chr19:925727..925784,+!p3@ARID3A!0.84!13.12!ARID3A;;chr1:247171316..247171336,-!p3@ZNF695!0.84!9.08!ZNF695;;chr17:41622925..41622976,-!p3@ETV4!0.84!9.08!ETV4;;chr19:49864746..49864780,-!p2@TEAD2!0.84!8.33!TEAD2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.84!6.81!ZSCAN2;;chr12:50479109..50479146,+!p2@SMARCD1!0.83!105.47!SMARCD1;;chr6:19837592..19837621,+!p1@ID4!0.83!38.10!ID4;;chr19:20959098..20959117,+!p1@ZNF66P!0.83!25.23!ZNF66P;;chr9:127533582..127533615,-!p1@NR6A1!0.83!8.83!NR6A1;;chr1:38512457..38512474,-!p1@POU3F1!0.83!6.31!POU3F1;;chr20:22564895..22564910,-!p1@FOXA2!0.83!5.80!FOXA2;;chrX:136648554..136648576,+!p4@ZIC3!0.83!5.80!ZIC3;;chr16:51185573..51185593,-!p3@SALL1!0.83!5.80!SALL1;;chr19:20188831..20188844,+!p2@ZNF90!0.82!5.55!ZNF90;;chr2:171572786..171572840,+!p2@SP5!0.82!5.55!SP5;;chr12:7941942..7941949,+!p3@NANOG!0.82!5.55!NANOG;;chr13:100623360..100623373,-!p2@ZIC5!0.82!5.55!ZIC5;;chr14:21562671..21562702,-!p8@ZNF219!0.82!5.55!ZNF219;;chr14:22005343..22005364,-!p5@SALL2!0.82!5.55!SALL2;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.94!SOX4;;chr7:148844205..148844236,+!p5@ZNF398!0.81!6.81!ZNF398;;chr3:170076223..170076242,+!p6@SKIL!0.81!6.31!SKIL;;chr10:70320115..70320126,+!p3@TET1!0.80!5.30!TET1;;chr16:30406423..30406447,+!p4@ZNF48!0.80!5.30!ZNF48;;chr17:41622731..41622764,-!p5@ETV4!0.80!5.30!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.80!5.30!YBX2;;chr19:47538560..47538591,+!p2@NPAS1!0.80!5.30!NPAS1;;chr19:54024313..54024361,+!p7@ZNF331!0.80!5.30!ZNF331;;chr8:11561684..11561751,+!p1@GATA4!0.80!5.30!GATA4;;chr2:60780607..60780624,-!p2@BCL11A!0.79!17.16!BCL11A;;chr19:58400344..58400364,-!p2@ZNF814!0.79!7.82!ZNF814;;chr16:3149266..3149277,-!p2@ZSCAN10!0.78!5.05!ZSCAN10;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.78!5.05!SEBOX;;chr13:95364784..95364806,-!p1@SOX21!0.78!5.05!SOX21;;chrX:136648768..136648781,+!p6@ZIC3!0.78!5.05!ZIC3;;chr1:202777535..20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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002322 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000221 | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
Line 34: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000334,FF:0000532,FF:12823-136I6 | |fonse_treatment_closure=EFO:0000369,FF:0000334,FF:0000532,FF:12823-136I6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528H9EB-3%2520d0%2529.CNhs12908.12823-136I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528H9EB-3%2520d0%2529.CNhs12908.12823-136I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528H9EB-3%2520d0%2529.CNhs12908.12823-136I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528H9EB-3%2520d0%2529.CNhs12908.12823-136I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528H9EB-3%2520d0%2529.CNhs12908.12823-136I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12823-136I6 | |id=FF:12823-136I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000532 | ||
|name=H9 Embryoid body cells, melanocytic induction | |is_obsolete= | ||
|library_id=CNhs12908 | |||
|library_id_phase_based=2:CNhs12908 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12823 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12823 | |||
|name=H9 Embryoid body cells, melanocytic induction | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12908,LSID974,release012,COMPLETED | |profile_hcage=CNhs12908,LSID974,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0626024185338689,0,0.00348261922920345,0.027258382599885,0,0,0,0,0,0,0,0,0,0,0,0,0,0.091439494823123,0,0,0,0,0,-0.000242284715540275,0,0,0.0444765045177318,0,0,0,0,0,0,0,0,0,0,0,0,-0.0291357640443817,0,0,0,0,0,0,0,0,0.725152631888205,0,0,0,0,0.0977156115525172,0.0160557547221188,0,0.147770143928946,0,0,0.000371984339420275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0488578057762586,0,0,0,0,0.0227234426871573,-0.111078472304599,0.0488578057762586,0,0,0.164407141585922,-0.16233959691961,0.0488578057762586,0,0,0,-0.0980353512377064,0.131326001003894,0,0,0,0.177433094296594,0,0,0.177433094296594,0,0,0,0,0,0,0,0,0,0,0.080834712301471,0,0,0,0,-0.119651859620763,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.0977156115525172,0,0,0,0.0977156115525172,0,0,0,0,-0.0697457809889704,0.0488578057762586,0.705751780661759,0.298375649533588,0.0488578057762586,0,-0.226900682620609,0,0.0977156115525172,0,0.00145679528068796,0.0977156115525172,0,0,0,0.0977156115525172,0.226296745495299,0,-0.0504125515893149,0.0488578057762586,0,0,0,0,-0.305472230898407,0,-0.0227374626368069,-0.0683442610773682,0,0.016539838884787,0,0,-0.181524122186027,0,0.0565536105028534,0.0149954432290999,0.30102911755296,0.437003714448967,0.0509109526601372,0,0,0.0488578057762586,0.162193581232223,-0.0486561173969547,0,0,0.122982653419677,0.0190287857283024,0,0,1.15380839012966,0.0977156115525172,-0.245035045800982,0.061941510688905,0,0.293531405988721,0,0,0,0,0,0,0,0,0.0977156115525172,0,0,0.113745591540597,-0.229272985126452,0.137574352924556,0.177433094296594,0.514665628074731,0.103518276072079,-0.056491174019312,0,0.17467103272784,-0.373286155956567,0.241249359325497,0.218187573864499,0.262825771785255,0,-0.204674115457396,0.00202197746491093,0.119117230190739,-0.154662425946712,0.207014763076726,-0.0922661079973301,0,-0.281838218205366,0.012980905782715,0.177433094296594,-0.111078472304599,0.0186130127325051,0.0453927955052005,0.0159403019630575,0.0977156115525172,0,0,-0.410727174789565,0,0.0071353511158534,-0.245352209305223,0.0873366749606719,-0.0670457478408335,0.158456350312185,0.573319536638466,0.523984863810375,0.351720674413994,-0.457436452896595,-0.0225348837635736,-0.0593866046855504,0.19070198267004,0,0,0.0966644791327121,0.120691393578626,0.216898528359354,0,0.14748366456906,-0.0683442610773682,0.0488578057762586,0.182693875817776,-0.0818411469208913,0,0.0278247221341585,-0.136886438814352,0,0,0,0.0636747074047035,0.354416612447864,-0.226522642387387,-0.441776531477649,0.246945230557938,0.0947686116218439,0.0353578877422967,0.00638590035395635,0.14911346460365,0.00820054748300993,0.0626588272878223,-0.146009897457394,-0.151307187812217,-0.0649827727794386,0.0203812452284236,0.0226012749428445,-0.393620671922708,0.0900654598436139,-0.422394805391737,1.01526406854539,-0.050606985921701,0.0150302310396622,0.178447482821843,-0.242001518650522,0.260976492720404,0.214914364550118,0,-0.483192415457828,-0.164832503546793,-0.00371273769557279,-0.143453340642554,0.0977156115525172,-0.379695400903151,0,-0.00201528117663474,0,0.0778454339860352,-0.237392554447834,-0.194526869409136,-0.234042692298604,0,-0.011864976554023,-0.387778602713422,0.177433094296594,0.0137352159490649,0,0.479800792113483,0.426610768484754,0.0044875045074565,0.117078476872046,-0.0166082040934195,0,-0.348189366332596,0.0977156115525172,0,-0.212954931828357,0.311462308375316,0.0977156115525172,-0.0546175672522495,0.070662033640634,-0.203863706134742,0.06146202086166,0.354416612447864,0,0.27428227264282,0.111365027805152,0.799253534896727,0.682308238145844,-0.0787749534349986,0.794851881624782,-0.253326341486756,0,0.956595979066279,0,0,-0.177527765965176,0,0.389523371823566,0,0,0.190195266988194,0,0,0.22094539602853,0.702183471020039,0.0488578057762586,0,0,0,0,0.050706577769988,0,0,0.118456344394862,0.388815583668755,0,0.27287041027776,0,0.0977156115525172,0,0,0,-0.0567538698317445,0.0652214936349702,0,-0.304094536855802,0.0441553501368137,0.231399196771444,0.137574352924556,0,0,0,0.565774694333801,-0.0258034677981297,0,0.310028085559428,0,0,0,0,0.0115746217633059,0,0,0,0,0.245310739971742,0.282679123447508,0,0,0,0.16493639045527,0,0,0,0,0.202795689120869,0,0,0.0244068644303649,0.100972977322249,-0.0286389943833383,0.78221792326219,0.0977156115525172,0.0597960828579905,0.268808076689409,0.3123446206827,0,0,0.180543660267173,0,0,-0.102982477006237,0,0.0977156115525172,0.0503554391417171,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.44189079205706,0,0.177433094296594,0,0.0488578057762586,0,-0.451422840187459,0.308128278402042,0.0977156115525172,0,0,0.0977156115525172,0.0121113112332461,0,0,0.220656482092647,0.239682189196194,0,0,0.0977156115525172,0,0,0,0,0,0.184911098153503,0,0,0,0,0,0.147770143928946,0,0.0977156115525172,0,0,-0.122916329096824,0,0,-0.09992903789692,0,0,0,0,0,0,0,0.0503775732444291,0,0,0,0,0,-0.0256034744829305,0.00348261922920345,0,0,0,0,0,0,0,0.23983232986864,0,0.177433094296594,0,0,1.90816650213136,0,0,0,-0.0070807732366392,0,-0.0626024185338689,0,0,0.67986494785403,0,0,0.00175620417893035,0,0,0,0,0,0,0,0,0,0,0,0,0.0488578057762586,0,0,-0.367615570700512,0.0289554292969425,0.0158890099858178,-0.0560428727081126,0,0,-0.0554200464091095,0,0,0,0,0,0,0.0175173817477315,0,0,0,0,0,0,0,0,0,0,0,0.0977156115525172,0,0,0,0,0,0,0,0,0,0,0,0,0.0488578057762586,-0.0348580438050884,0,0,0,0,0,0,0,-0.000242284715540275,0,0,-0.0920328098005262,0,0,0,0,0.0977156115525172,0,0.0150643563686965,-0.145646046898592,0.0437009377071782,0.0977156115525172,0,0,0.0679956801033205,0,0,0.0511872726108742,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151520598512703,0,0,0,0,0.0977156115525172,0.091439494823123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| |||
|rna_box=136 | |rna_box=136 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 54: | Line 78: | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id=136I6 | |rna_tube_id=136I6 | ||
|rna_weight_ug=7 | |rna_weight_ug=7 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=H9 | |sample_cell_line=H9 | ||
Line 68: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Human ES cell differentiation to melanocyte | |sample_experimental_condition=Human ES cell differentiation to melanocyte | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.48885241297223e-282!GO:0043226;organelle;2.17901402825839e-233!GO:0043229;intracellular organelle;7.79041430677717e-233!GO:0043231;intracellular membrane-bound organelle;2.57243115944057e-229!GO:0043227;membrane-bound organelle;2.57243115944057e-229!GO:0005737;cytoplasm;1.03965316946285e-184!GO:0044422;organelle part;4.44399079568794e-157!GO:0044446;intracellular organelle part;1.37775545419089e-155!GO:0044444;cytoplasmic part;2.70930881730651e-125!GO:0032991;macromolecular complex;2.08262654153417e-117!GO:0005634;nucleus;1.02832821596509e-110!GO:0044237;cellular metabolic process;9.57974453683025e-108!GO:0044238;primary metabolic process;5.43076907129447e-107!GO:0043170;macromolecule metabolic process;5.6852867510435e-100!GO:0030529;ribonucleoprotein complex;6.47482076376208e-100!GO:0044428;nuclear part;5.82726466088624e-86!GO:0003723;RNA binding;2.50479754540399e-85!GO:0043233;organelle lumen;1.5503970629364e-83!GO:0031974;membrane-enclosed lumen;1.5503970629364e-83!GO:0005515;protein binding;1.34967923910749e-79!GO:0005739;mitochondrion;2.20709510422785e-73!GO:0043283;biopolymer metabolic process;3.39318681850535e-60!GO:0043234;protein complex;5.05371902489052e-59!GO:0005840;ribosome;7.23096049976822e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.61049362018056e-59!GO:0016043;cellular component organization and biogenesis;2.41941326788016e-58!GO:0006396;RNA processing;4.31967972740568e-58!GO:0010467;gene expression;5.16959663909342e-58!GO:0006412;translation;4.50959744552538e-55!GO:0031981;nuclear lumen;1.77042389486936e-52!GO:0003735;structural constituent of ribosome;8.15536081527261e-51!GO:0044429;mitochondrial part;1.71158802988532e-49!GO:0006996;organelle organization and biogenesis;4.16292130475285e-47!GO:0043228;non-membrane-bound organelle;1.57446415515828e-46!GO:0043232;intracellular non-membrane-bound organelle;1.57446415515828e-46!GO:0044249;cellular biosynthetic process;2.75287878155325e-45!GO:0019538;protein metabolic process;3.29258441728903e-45!GO:0016071;mRNA metabolic process;1.1679072893489e-44!GO:0009058;biosynthetic process;1.26017706809939e-44!GO:0033279;ribosomal subunit;3.67113874687362e-44!GO:0031967;organelle envelope;2.04996959773715e-43!GO:0031975;envelope;4.41606935298214e-43!GO:0031090;organelle membrane;4.63412561146802e-43!GO:0008380;RNA splicing;9.27565032712586e-42!GO:0009059;macromolecule biosynthetic process;6.06910839521263e-41!GO:0065003;macromolecular complex assembly;8.04606438059823e-41!GO:0006259;DNA metabolic process;8.2296105911075e-40!GO:0044267;cellular protein metabolic process;2.73948444367784e-39!GO:0044260;cellular macromolecule metabolic process;3.13075289137392e-39!GO:0022607;cellular component assembly;2.59802815597649e-38!GO:0003676;nucleic acid binding;4.19902531590651e-38!GO:0015031;protein transport;4.39633351067154e-38!GO:0033036;macromolecule localization;5.92583366125637e-38!GO:0006397;mRNA processing;8.11788411664108e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.1345045988373e-37!GO:0005829;cytosol;4.43852931520611e-36!GO:0008104;protein localization;1.67965711064507e-33!GO:0046907;intracellular transport;2.88012128739656e-33!GO:0045184;establishment of protein localization;2.89945695935674e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.7744442660826e-32!GO:0005681;spliceosome;9.93559490079702e-31!GO:0005654;nucleoplasm;1.73554487242033e-30!GO:0005740;mitochondrial envelope;2.61806128059783e-30!GO:0019866;organelle inner membrane;2.68020521878944e-30!GO:0016070;RNA metabolic process;2.32209848462544e-29!GO:0007049;cell cycle;1.32473409814728e-28!GO:0031966;mitochondrial membrane;6.22535261457024e-28!GO:0005743;mitochondrial inner membrane;1.03396033536428e-27!GO:0006886;intracellular protein transport;3.58530525609275e-26!GO:0005694;chromosome;8.76443750857003e-26!GO:0000166;nucleotide binding;4.11659832886728e-25!GO:0044445;cytosolic part;5.82692787662858e-25!GO:0044451;nucleoplasm part;5.82692787662858e-25!GO:0005730;nucleolus;2.03619546514905e-24!GO:0044427;chromosomal part;1.60883423307914e-23!GO:0031980;mitochondrial lumen;2.51681827683141e-23!GO:0005759;mitochondrial matrix;2.51681827683141e-23!GO:0015934;large ribosomal subunit;7.31692005249505e-23!GO:0044455;mitochondrial membrane part;8.9730894411228e-23!GO:0051276;chromosome organization and biogenesis;1.03693690504319e-22!GO:0006119;oxidative phosphorylation;1.7600158498795e-22!GO:0051649;establishment of cellular localization;2.1437514077542e-22!GO:0015935;small ribosomal subunit;2.39568251951602e-22!GO:0000278;mitotic cell cycle;1.02118332975981e-21!GO:0051641;cellular localization;2.36662054052194e-21!GO:0006974;response to DNA damage stimulus;2.57491159407851e-21!GO:0022402;cell cycle process;4.75838817691868e-21!GO:0022618;protein-RNA complex assembly;9.32550117128497e-21!GO:0016462;pyrophosphatase activity;9.5046261985452e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.58425872217317e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.53409547542164e-20!GO:0017111;nucleoside-triphosphatase activity;8.07210862575961e-20!GO:0016874;ligase activity;1.4362956626568e-18!GO:0044265;cellular macromolecule catabolic process;1.89537985621309e-18!GO:0022403;cell cycle phase;2.3992828226489e-18!GO:0000087;M phase of mitotic cell cycle;3.85818929023958e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;5.32737365843174e-18!GO:0007067;mitosis;7.42636440504176e-18!GO:0006323;DNA packaging;2.55799637203218e-17!GO:0008135;translation factor activity, nucleic acid binding;2.87478449834066e-17!GO:0006457;protein folding;2.93078186961072e-17!GO:0042254;ribosome biogenesis and assembly;3.30337937213462e-17!GO:0005761;mitochondrial ribosome;8.85480389881931e-17!GO:0000313;organellar ribosome;8.85480389881931e-17!GO:0006281;DNA repair;9.65263969275757e-17!GO:0005746;mitochondrial respiratory chain;1.62565593926604e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.47339139855831e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.59949317843334e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.89130883591317e-16!GO:0003954;NADH dehydrogenase activity;2.89130883591317e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.89130883591317e-16!GO:0032553;ribonucleotide binding;2.92906875766915e-16!GO:0032555;purine ribonucleotide binding;2.92906875766915e-16!GO:0043285;biopolymer catabolic process;3.58691592032009e-16!GO:0006512;ubiquitin cycle;3.79590306284275e-16!GO:0051301;cell division;3.80405150255778e-16!GO:0019941;modification-dependent protein catabolic process;3.80406491328172e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.80406491328172e-16!GO:0006260;DNA replication;3.88779828803453e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;3.97087457070277e-16!GO:0000375;RNA splicing, via transesterification reactions;3.97087457070277e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.97087457070277e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.05152129891575e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.52511006028777e-16!GO:0012505;endomembrane system;6.47620611798888e-16!GO:0044257;cellular protein catabolic process;6.66228553915709e-16!GO:0009057;macromolecule catabolic process;6.6826927894499e-16!GO:0008134;transcription factor binding;7.22173884182357e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.73010447609681e-16!GO:0017076;purine nucleotide binding;9.72970625400605e-16!GO:0000279;M phase;1.1208151239079e-15!GO:0048770;pigment granule;1.48603516593613e-15!GO:0042470;melanosome;1.48603516593613e-15!GO:0044248;cellular catabolic process;1.9963684540435e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.34860383076029e-15!GO:0031965;nuclear membrane;1.02245038882008e-14!GO:0044453;nuclear membrane part;1.15156455848177e-14!GO:0051186;cofactor metabolic process;4.31641099997179e-14!GO:0000785;chromatin;4.9454389648241e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.03337797421261e-14!GO:0042773;ATP synthesis coupled electron transport;6.03337797421261e-14!GO:0005635;nuclear envelope;6.31101342077988e-14!GO:0009719;response to endogenous stimulus;6.47113697384482e-14!GO:0030163;protein catabolic process;6.63389025678609e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.99739898133223e-14!GO:0045271;respiratory chain complex I;6.99739898133223e-14!GO:0005747;mitochondrial respiratory chain complex I;6.99739898133223e-14!GO:0006605;protein targeting;1.00681289984926e-13!GO:0065004;protein-DNA complex assembly;1.07790621343259e-13!GO:0005643;nuclear pore;1.19088773276057e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.41325211830174e-13!GO:0006413;translational initiation;3.49952404505088e-13!GO:0006403;RNA localization;4.0702312405091e-13!GO:0003743;translation initiation factor activity;6.73858031487768e-13!GO:0005524;ATP binding;7.76939469745584e-13!GO:0051082;unfolded protein binding;8.46538368988752e-13!GO:0050657;nucleic acid transport;9.32045784882637e-13!GO:0051236;establishment of RNA localization;9.32045784882637e-13!GO:0050658;RNA transport;9.32045784882637e-13!GO:0016604;nuclear body;1.23431794154491e-12!GO:0032559;adenyl ribonucleotide binding;1.53490337076078e-12!GO:0005794;Golgi apparatus;1.64006194521928e-12!GO:0006333;chromatin assembly or disassembly;2.51832996850899e-12!GO:0006364;rRNA processing;2.94763620887212e-12!GO:0006399;tRNA metabolic process;3.31192518290745e-12!GO:0016072;rRNA metabolic process;4.47471472113346e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.47471472113346e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.24648523149343e-12!GO:0030554;adenyl nucleotide binding;6.6078204853422e-12!GO:0006732;coenzyme metabolic process;7.34624754418132e-12!GO:0006446;regulation of translational initiation;1.03790452362023e-11!GO:0043412;biopolymer modification;1.08106018280564e-11!GO:0065002;intracellular protein transport across a membrane;1.77640732408902e-11!GO:0004386;helicase activity;1.99710839682521e-11!GO:0006334;nucleosome assembly;3.52534007777574e-11!GO:0042623;ATPase activity, coupled;3.77632178089396e-11!GO:0008565;protein transporter activity;4.25376186043435e-11!GO:0006461;protein complex assembly;5.43544906689923e-11!GO:0031497;chromatin assembly;5.79081081815222e-11!GO:0006913;nucleocytoplasmic transport;6.36693377550055e-11!GO:0051028;mRNA transport;7.41349255537668e-11!GO:0016887;ATPase activity;8.4505531992112e-11!GO:0005783;endoplasmic reticulum;8.76037006287061e-11!GO:0016607;nuclear speck;1.19692818947803e-10!GO:0046930;pore complex;1.55695298076768e-10!GO:0048193;Golgi vesicle transport;1.55695298076768e-10!GO:0051169;nuclear transport;2.02432786083222e-10!GO:0009055;electron carrier activity;2.35042158719946e-10!GO:0006366;transcription from RNA polymerase II promoter;2.4588777132443e-10!GO:0050794;regulation of cellular process;2.6534322867229e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.26276965431492e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.13070646372345e-10!GO:0008026;ATP-dependent helicase activity;5.47456330052313e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.64025523147966e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.64025523147966e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.64025523147966e-10!GO:0006464;protein modification process;1.04506678268836e-09!GO:0015630;microtubule cytoskeleton;1.13602126138722e-09!GO:0003712;transcription cofactor activity;1.91126740116175e-09!GO:0043038;amino acid activation;2.70886073526399e-09!GO:0006418;tRNA aminoacylation for protein translation;2.70886073526399e-09!GO:0043039;tRNA aminoacylation;2.70886073526399e-09!GO:0009259;ribonucleotide metabolic process;3.46541070338986e-09!GO:0000074;regulation of progression through cell cycle;4.40652048370053e-09!GO:0009056;catabolic process;4.43813275865086e-09!GO:0051726;regulation of cell cycle;4.46180446144706e-09!GO:0006163;purine nucleotide metabolic process;4.75541082361282e-09!GO:0006261;DNA-dependent DNA replication;5.54145846855103e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.45548908855401e-09!GO:0043687;post-translational protein modification;8.30372515680454e-09!GO:0006164;purine nucleotide biosynthetic process;8.65454670596817e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.01903484703609e-08!GO:0009260;ribonucleotide biosynthetic process;1.38930518972105e-08!GO:0017038;protein import;1.43150189693017e-08!GO:0016740;transferase activity;1.5123586999703e-08!GO:0016568;chromatin modification;1.7091235415467e-08!GO:0016192;vesicle-mediated transport;1.89201865174152e-08!GO:0016779;nucleotidyltransferase activity;2.28936763244697e-08!GO:0008639;small protein conjugating enzyme activity;2.51937288521945e-08!GO:0007005;mitochondrion organization and biogenesis;3.53327436063292e-08!GO:0009150;purine ribonucleotide metabolic process;4.17491317504195e-08!GO:0012501;programmed cell death;5.0023164387041e-08!GO:0004842;ubiquitin-protein ligase activity;5.24252105692796e-08!GO:0003697;single-stranded DNA binding;5.33101280612439e-08!GO:0000775;chromosome, pericentric region;6.26512028465505e-08!GO:0019222;regulation of metabolic process;6.29668626415923e-08!GO:0015986;ATP synthesis coupled proton transport;6.42424970292791e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.42424970292791e-08!GO:0051188;cofactor biosynthetic process;6.5595488877542e-08!GO:0003899;DNA-directed RNA polymerase activity;6.89659265762488e-08!GO:0009060;aerobic respiration;7.02646075018885e-08!GO:0044432;endoplasmic reticulum part;7.28897431234931e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.33045353800127e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.55426072346589e-08!GO:0006915;apoptosis;8.16272331073448e-08!GO:0050789;regulation of biological process;9.09508252685377e-08!GO:0005793;ER-Golgi intermediate compartment;1.04725821038027e-07!GO:0019787;small conjugating protein ligase activity;1.0773657857158e-07!GO:0043623;cellular protein complex assembly;1.11089788140719e-07!GO:0043566;structure-specific DNA binding;1.1277107684915e-07!GO:0045333;cellular respiration;1.38260219297405e-07!GO:0003924;GTPase activity;2.07282940094061e-07!GO:0019829;cation-transporting ATPase activity;2.3438127618758e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.01429195422663e-07!GO:0000245;spliceosome assembly;5.17408674084674e-07!GO:0005657;replication fork;6.61177488238912e-07!GO:0005819;spindle;7.35785196568258e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.49317667423977e-07!GO:0009117;nucleotide metabolic process;8.34804577675674e-07!GO:0009142;nucleoside triphosphate biosynthetic process;8.728281594813e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.728281594813e-07!GO:0009108;coenzyme biosynthetic process;8.728281594813e-07!GO:0007051;spindle organization and biogenesis;9.07419745959138e-07!GO:0007010;cytoskeleton organization and biogenesis;1.00381723113719e-06!GO:0051246;regulation of protein metabolic process;1.0058393867851e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.02472483641623e-06!GO:0008219;cell death;1.13583310296639e-06!GO:0016265;death;1.13583310296639e-06!GO:0005667;transcription factor complex;1.14273167637552e-06!GO:0031988;membrane-bound vesicle;1.41944064689081e-06!GO:0009141;nucleoside triphosphate metabolic process;1.4362598238877e-06!GO:0006099;tricarboxylic acid cycle;1.49891878570043e-06!GO:0046356;acetyl-CoA catabolic process;1.49891878570043e-06!GO:0006754;ATP biosynthetic process;1.69612736369479e-06!GO:0006753;nucleoside phosphate metabolic process;1.69612736369479e-06!GO:0045259;proton-transporting ATP synthase complex;1.77027307683541e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.80558690437155e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.80755820922543e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.80755820922543e-06!GO:0016881;acid-amino acid ligase activity;1.96867688135259e-06!GO:0031982;vesicle;1.98277426551803e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.02952071238368e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.02952071238368e-06!GO:0006084;acetyl-CoA metabolic process;2.02952071238368e-06!GO:0008094;DNA-dependent ATPase activity;2.03984141094377e-06!GO:0005525;GTP binding;2.07137974470185e-06!GO:0048475;coated membrane;2.15510950850553e-06!GO:0030117;membrane coat;2.15510950850553e-06!GO:0032446;protein modification by small protein conjugation;2.4758247717885e-06!GO:0046034;ATP metabolic process;2.74176975515109e-06!GO:0031410;cytoplasmic vesicle;2.89828201478734e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.9149205220779e-06!GO:0051329;interphase of mitotic cell cycle;2.91772289015326e-06!GO:0003724;RNA helicase activity;3.25584669206322e-06!GO:0000786;nucleosome;3.25935007558205e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.46147271951223e-06!GO:0006752;group transfer coenzyme metabolic process;3.98476493058082e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.07494556797229e-06!GO:0005762;mitochondrial large ribosomal subunit;4.23050197862886e-06!GO:0000315;organellar large ribosomal subunit;4.23050197862886e-06!GO:0051325;interphase;4.27650823250372e-06!GO:0016567;protein ubiquitination;5.27350861706456e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.93519227269644e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.15239334704745e-06!GO:0000314;organellar small ribosomal subunit;7.34668954368459e-06!GO:0005763;mitochondrial small ribosomal subunit;7.34668954368459e-06!GO:0048523;negative regulation of cellular process;1.14299390126127e-05!GO:0051187;cofactor catabolic process;1.29552676244368e-05!GO:0031323;regulation of cellular metabolic process;1.31172964522044e-05!GO:0051427;hormone receptor binding;1.34926222509665e-05!GO:0006350;transcription;1.43234717020088e-05!GO:0044452;nucleolar part;1.43568237224596e-05!GO:0005768;endosome;1.44608032625962e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.55434165917082e-05!GO:0051170;nuclear import;1.62488400994586e-05!GO:0051168;nuclear export;1.91302534446575e-05!GO:0005789;endoplasmic reticulum membrane;2.04945299561244e-05!GO:0032561;guanyl ribonucleotide binding;2.08085690753162e-05!GO:0019001;guanyl nucleotide binding;2.08085690753162e-05!GO:0009109;coenzyme catabolic process;2.09860417648848e-05!GO:0030120;vesicle coat;2.21402379538999e-05!GO:0030662;coated vesicle membrane;2.21402379538999e-05!GO:0005813;centrosome;2.27139302511004e-05!GO:0006613;cotranslational protein targeting to membrane;2.44925180398044e-05!GO:0044431;Golgi apparatus part;2.52566925955522e-05!GO:0035257;nuclear hormone receptor binding;2.97606192178569e-05!GO:0000075;cell cycle checkpoint;3.06625200785352e-05!GO:0004298;threonine endopeptidase activity;3.96226973780848e-05!GO:0016853;isomerase activity;4.06622918443824e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.0874001078083e-05!GO:0006606;protein import into nucleus;4.19964712306699e-05!GO:0031252;leading edge;4.37237257449787e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.53668858753865e-05!GO:0007059;chromosome segregation;5.01520940281933e-05!GO:0007017;microtubule-based process;5.34971472456827e-05!GO:0000776;kinetochore;5.37883321718441e-05!GO:0005815;microtubule organizing center;5.9290348318354e-05!GO:0008186;RNA-dependent ATPase activity;6.27552180260771e-05!GO:0006793;phosphorus metabolic process;6.62087308368635e-05!GO:0006796;phosphate metabolic process;6.62087308368635e-05!GO:0006383;transcription from RNA polymerase III promoter;6.67817946366244e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.3843446457205e-05!GO:0003713;transcription coactivator activity;8.57116949000441e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;8.85736362940012e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.90007085047124e-05!GO:0006401;RNA catabolic process;9.16782926461306e-05!GO:0006402;mRNA catabolic process;9.51638909259428e-05!GO:0010468;regulation of gene expression;9.54388406065214e-05!GO:0031324;negative regulation of cellular metabolic process;0.000100084969124202!GO:0043681;protein import into mitochondrion;0.000102848043550612!GO:0003690;double-stranded DNA binding;0.000103261052253226!GO:0016741;transferase activity, transferring one-carbon groups;0.000104611322912898!GO:0043021;ribonucleoprotein binding;0.000104923803261612!GO:0048519;negative regulation of biological process;0.000107371368604548!GO:0016363;nuclear matrix;0.000116962486525621!GO:0000059;protein import into nucleus, docking;0.000119080847528196!GO:0043069;negative regulation of programmed cell death;0.00013047102648504!GO:0009165;nucleotide biosynthetic process;0.000132951757836391!GO:0005874;microtubule;0.000135892545066979!GO:0051087;chaperone binding;0.000136812524126387!GO:0005770;late endosome;0.000136812524126387!GO:0042802;identical protein binding;0.000136864736571332!GO:0016859;cis-trans isomerase activity;0.000143031970311767!GO:0003682;chromatin binding;0.000153214158529342!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000156612207166637!GO:0043066;negative regulation of apoptosis;0.000171341014262772!GO:0006839;mitochondrial transport;0.000172255718791177!GO:0008168;methyltransferase activity;0.000177175217022106!GO:0006302;double-strand break repair;0.000177959632025343!GO:0004004;ATP-dependent RNA helicase activity;0.000190723340370959!GO:0006520;amino acid metabolic process;0.000194168406978405!GO:0003729;mRNA binding;0.000197217152135996!GO:0000151;ubiquitin ligase complex;0.000200810023994169!GO:0016563;transcription activator activity;0.000206244327556183!GO:0008033;tRNA processing;0.000213797135902025!GO:0045454;cell redox homeostasis;0.000218444830658023!GO:0000139;Golgi membrane;0.000227231864679518!GO:0007006;mitochondrial membrane organization and biogenesis;0.000227869945833042!GO:0030880;RNA polymerase complex;0.000233050887154891!GO:0005769;early endosome;0.000306563167579505!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000307152487146094!GO:0009892;negative regulation of metabolic process;0.000309314151511346!GO:0007093;mitotic cell cycle checkpoint;0.000310290595971383!GO:0032774;RNA biosynthetic process;0.000313908208537472!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000313908208537472!GO:0051052;regulation of DNA metabolic process;0.000321333181160321!GO:0042981;regulation of apoptosis;0.000321334941208824!GO:0006414;translational elongation;0.000333501123728702!GO:0015980;energy derivation by oxidation of organic compounds;0.00034267982508646!GO:0043067;regulation of programmed cell death;0.000361658745392845!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000370636008462509!GO:0044440;endosomal part;0.000370636008462509!GO:0010008;endosome membrane;0.000370636008462509!GO:0016564;transcription repressor activity;0.000370636008462509!GO:0006612;protein targeting to membrane;0.000370962711705173!GO:0006351;transcription, DNA-dependent;0.000379091536042834!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000380581478076447!GO:0032508;DNA duplex unwinding;0.000456301955969235!GO:0032392;DNA geometric change;0.000456301955969235!GO:0005684;U2-dependent spliceosome;0.00046693913293588!GO:0008654;phospholipid biosynthetic process;0.000485550825009042!GO:0006730;one-carbon compound metabolic process;0.000493044834634693!GO:0065007;biological regulation;0.000529160097078125!GO:0006916;anti-apoptosis;0.000532402924238317!GO:0051920;peroxiredoxin activity;0.000551493057582366!GO:0003714;transcription corepressor activity;0.000568241184408281!GO:0015631;tubulin binding;0.000578407585865296!GO:0048471;perinuclear region of cytoplasm;0.000587201722623125!GO:0003684;damaged DNA binding;0.000594596128793942!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000599169626680364!GO:0000428;DNA-directed RNA polymerase complex;0.000599169626680364!GO:0005788;endoplasmic reticulum lumen;0.000631627333647545!GO:0016310;phosphorylation;0.000646940741633751!GO:0016787;hydrolase activity;0.000650457850412662!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000667361610765134!GO:0003678;DNA helicase activity;0.000667361610765134!GO:0006338;chromatin remodeling;0.000671378768098905!GO:0008250;oligosaccharyl transferase complex;0.000682206962813783!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000704338890036783!GO:0043414;biopolymer methylation;0.000719261775416131!GO:0009112;nucleobase metabolic process;0.000735617510625596!GO:0051252;regulation of RNA metabolic process;0.000735617510625596!GO:0030867;rough endoplasmic reticulum membrane;0.000765424159797968!GO:0006626;protein targeting to mitochondrion;0.000793089361951384!GO:0006268;DNA unwinding during replication;0.000874828435528266!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000878434456739567!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000929480104340218!GO:0005798;Golgi-associated vesicle;0.000931741803747933!GO:0048487;beta-tubulin binding;0.000945502392867163!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010080199659451!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010080199659451!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010080199659451!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00101279868081099!GO:0046483;heterocycle metabolic process;0.00104488834858838!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00110597247817005!GO:0005048;signal sequence binding;0.00113532124208773!GO:0045786;negative regulation of progression through cell cycle;0.00114607828950045!GO:0007088;regulation of mitosis;0.00118029445535325!GO:0006352;transcription initiation;0.00124057284589175!GO:0006144;purine base metabolic process;0.00124948308967483!GO:0006405;RNA export from nucleus;0.00128464113275732!GO:0007052;mitotic spindle organization and biogenesis;0.00128732210946663!GO:0032259;methylation;0.00131906415204093!GO:0040029;regulation of gene expression, epigenetic;0.0013920698586445!GO:0004527;exonuclease activity;0.0014322058767229!GO:0030036;actin cytoskeleton organization and biogenesis;0.0014322058767229!GO:0019843;rRNA binding;0.00144073011402278!GO:0016491;oxidoreductase activity;0.00147155144371241!GO:0043488;regulation of mRNA stability;0.0014832390878658!GO:0043487;regulation of RNA stability;0.0014832390878658!GO:0044262;cellular carbohydrate metabolic process;0.00151345374511894!GO:0007264;small GTPase mediated signal transduction;0.00159361755658911!GO:0004576;oligosaccharyl transferase activity;0.00168547815718465!GO:0005885;Arp2/3 protein complex;0.00177114093233841!GO:0005637;nuclear inner membrane;0.00182838612760525!GO:0009116;nucleoside metabolic process;0.00190192758104381!GO:0006519;amino acid and derivative metabolic process;0.00194226075098791!GO:0016272;prefoldin complex;0.00194789813504051!GO:0005741;mitochondrial outer membrane;0.00210467921847241!GO:0006541;glutamine metabolic process;0.00224985952188563!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00233869696191262!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00233869696191262!GO:0043596;nuclear replication fork;0.00252051178210626!GO:0016126;sterol biosynthetic process;0.00253263893010403!GO:0031072;heat shock protein binding;0.00253263893010403!GO:0000159;protein phosphatase type 2A complex;0.00256315107509597!GO:0003677;DNA binding;0.00256666984172871!GO:0000049;tRNA binding;0.00257653748578308!GO:0008092;cytoskeletal protein binding;0.00263382144775657!GO:0016481;negative regulation of transcription;0.00281030810170786!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00285786788234812!GO:0003711;transcription elongation regulator activity;0.00294373068046926!GO:0006270;DNA replication initiation;0.00308653452151628!GO:0031968;organelle outer membrane;0.00317237371526484!GO:0030118;clathrin coat;0.00318350243245238!GO:0006310;DNA recombination;0.00318792781908367!GO:0048500;signal recognition particle;0.00319148171284278!GO:0005758;mitochondrial intermembrane space;0.00326750786523276!GO:0000228;nuclear chromosome;0.00339087820698479!GO:0008601;protein phosphatase type 2A regulator activity;0.00343959858612718!GO:0005791;rough endoplasmic reticulum;0.00383281155427398!GO:0030027;lamellipodium;0.00388111816010196!GO:0031124;mRNA 3'-end processing;0.00389320071167655!GO:0033116;ER-Golgi intermediate compartment membrane;0.00393363861784399!GO:0005905;coated pit;0.00401427664177908!GO:0006284;base-excision repair;0.00405722255781438!GO:0006611;protein export from nucleus;0.00409781772506375!GO:0003746;translation elongation factor activity;0.00412288262137015!GO:0030521;androgen receptor signaling pathway;0.00424670430629632!GO:0008652;amino acid biosynthetic process;0.00429179807261965!GO:0008287;protein serine/threonine phosphatase complex;0.00432396954896864!GO:0035258;steroid hormone receptor binding;0.00432396954896864!GO:0000178;exosome (RNase complex);0.00441844769199737!GO:0006007;glucose catabolic process;0.00445699738249555!GO:0006595;polyamine metabolic process;0.00448604605597593!GO:0019867;outer membrane;0.00458415154477876!GO:0018196;peptidyl-asparagine modification;0.00462748744319526!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00462748744319526!GO:0045449;regulation of transcription;0.00463810445851976!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0046817814221686!GO:0008312;7S RNA binding;0.00468880751306333!GO:0030029;actin filament-based process;0.00491177030871888!GO:0019752;carboxylic acid metabolic process;0.00497460173177728!GO:0046474;glycerophospholipid biosynthetic process;0.00502832185618516!GO:0006082;organic acid metabolic process;0.00530275774055307!GO:0016584;nucleosome positioning;0.00532138734483547!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00550612114413489!GO:0031970;organelle envelope lumen;0.00552800931744014!GO:0051287;NAD binding;0.00552800931744014!GO:0016251;general RNA polymerase II transcription factor activity;0.00558997429876692!GO:0042393;histone binding;0.00561919727217474!GO:0001726;ruffle;0.00600428409017071!GO:0006275;regulation of DNA replication;0.006070556146342!GO:0050662;coenzyme binding;0.00641655481676372!GO:0008180;signalosome;0.00642869600631896!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00642869600631896!GO:0006091;generation of precursor metabolites and energy;0.00643947461159317!GO:0043284;biopolymer biosynthetic process;0.00653591899322784!GO:0009303;rRNA transcription;0.00654468160177215!GO:0019899;enzyme binding;0.00654804127975058!GO:0051101;regulation of DNA binding;0.00663279670133287!GO:0030658;transport vesicle membrane;0.0067245872649693!GO:0005876;spindle microtubule;0.00674187111622471!GO:0009451;RNA modification;0.00683421316120206!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00705072725289779!GO:0045047;protein targeting to ER;0.00705072725289779!GO:0051539;4 iron, 4 sulfur cluster binding;0.00707407168986409!GO:0008139;nuclear localization sequence binding;0.00741505079374819!GO:0030119;AP-type membrane coat adaptor complex;0.00755913859768027!GO:0004518;nuclease activity;0.0076466758917611!GO:0000725;recombinational repair;0.00782010748154945!GO:0000724;double-strand break repair via homologous recombination;0.00782010748154945!GO:0045893;positive regulation of transcription, DNA-dependent;0.0078635151693194!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00786718113632687!GO:0015002;heme-copper terminal oxidase activity;0.00786718113632687!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00786718113632687!GO:0004129;cytochrome-c oxidase activity;0.00786718113632687!GO:0006378;mRNA polyadenylation;0.00787808587708182!GO:0000096;sulfur amino acid metabolic process;0.00790527810186402!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00798291993908706!GO:0051789;response to protein stimulus;0.00829329124926759!GO:0006986;response to unfolded protein;0.00829329124926759!GO:0004532;exoribonuclease activity;0.00840576007227788!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00840576007227788!GO:0043022;ribosome binding;0.00850360560669635!GO:0000792;heterochromatin;0.00855227054122527!GO:0030134;ER to Golgi transport vesicle;0.00893175608154432!GO:0043601;nuclear replisome;0.00906491542505872!GO:0030894;replisome;0.00906491542505872!GO:0006790;sulfur metabolic process;0.00910700729926196!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00917351130672895!GO:0032200;telomere organization and biogenesis;0.00940889867710242!GO:0000723;telomere maintenance;0.00940889867710242!GO:0005669;transcription factor TFIID complex;0.0096291369754571!GO:0005832;chaperonin-containing T-complex;0.00963555369999886!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00972302757008004!GO:0007021;tubulin folding;0.00984205473851373!GO:0042770;DNA damage response, signal transduction;0.0100374852726267!GO:0044454;nuclear chromosome part;0.0103925000339665!GO:0000339;RNA cap binding;0.0104936693916248!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0108863389530183!GO:0009064;glutamine family amino acid metabolic process;0.0109124852935847!GO:0051540;metal cluster binding;0.0110723403674268!GO:0051536;iron-sulfur cluster binding;0.0110723403674268!GO:0008022;protein C-terminus binding;0.0111418512313868!GO:0008632;apoptotic program;0.0111951506224133!GO:0000922;spindle pole;0.011429566318027!GO:0008629;induction of apoptosis by intracellular signals;0.0115300201257739!GO:0030131;clathrin adaptor complex;0.0119626065792188!GO:0000209;protein polyubiquitination;0.0125207476143619!GO:0000819;sister chromatid segregation;0.0125207476143619!GO:0006695;cholesterol biosynthetic process;0.0125244323340992!GO:0000070;mitotic sister chromatid segregation;0.0126291338195899!GO:0008320;protein transmembrane transporter activity;0.0126291338195899!GO:0000082;G1/S transition of mitotic cell cycle;0.0126747528196631!GO:0006355;regulation of transcription, DNA-dependent;0.0127028544226726!GO:0022884;macromolecule transmembrane transporter activity;0.0130161593981936!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0130161593981936!GO:0065009;regulation of a molecular function;0.013768065022815!GO:0045045;secretory pathway;0.013768065022815!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.013832440728042!GO:0030663;COPI coated vesicle membrane;0.0140134708241144!GO:0030126;COPI vesicle coat;0.0140134708241144!GO:0004003;ATP-dependent DNA helicase activity;0.0142509297151113!GO:0031577;spindle checkpoint;0.0144275643125012!GO:0005996;monosaccharide metabolic process;0.0148699043941635!GO:0001824;blastocyst development;0.0149257665641722!GO:0030133;transport vesicle;0.0149659163924133!GO:0051098;regulation of binding;0.0149659163924133!GO:0016044;membrane organization and biogenesis;0.0149856618320184!GO:0045941;positive regulation of transcription;0.0153800838754623!GO:0001725;stress fiber;0.0155065470114336!GO:0032432;actin filament bundle;0.0155065470114336!GO:0045892;negative regulation of transcription, DNA-dependent;0.0157809035449224!GO:0030127;COPII vesicle coat;0.0162072209986534!GO:0012507;ER to Golgi transport vesicle membrane;0.0162072209986534!GO:0030660;Golgi-associated vesicle membrane;0.016583597084203!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.016583597084203!GO:0006096;glycolysis;0.0167885612600033!GO:0043624;cellular protein complex disassembly;0.0170418340756213!GO:0015992;proton transport;0.0173246016374916!GO:0006376;mRNA splice site selection;0.0176767968894129!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0176767968894129!GO:0031570;DNA integrity checkpoint;0.018301722873744!GO:0046467;membrane lipid biosynthetic process;0.0184607267790162!GO:0005862;muscle thin filament tropomyosin;0.0184607267790162!GO:0022890;inorganic cation transmembrane transporter activity;0.0184766694245744!GO:0006400;tRNA modification;0.0187231389798995!GO:0006818;hydrogen transport;0.0188316022221166!GO:0019318;hexose metabolic process;0.0195380353265043!GO:0046365;monosaccharide catabolic process;0.0195380353265043!GO:0016835;carbon-oxygen lyase activity;0.0201742850035876!GO:0031123;RNA 3'-end processing;0.0204316104228836!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0206020020428084!GO:0016585;chromatin remodeling complex;0.0206298085092267!GO:0030659;cytoplasmic vesicle membrane;0.0206366032809065!GO:0005732;small nucleolar ribonucleoprotein complex;0.0206689350492583!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.020672551277161!GO:0032984;macromolecular complex disassembly;0.0207856974263341!GO:0017166;vinculin binding;0.0211994603302149!GO:0009308;amine metabolic process;0.0213548825784215!GO:0005773;vacuole;0.0217451152121508!GO:0005938;cell cortex;0.0219147947347963!GO:0050178;phenylpyruvate tautomerase activity;0.0219147947347963!GO:0006891;intra-Golgi vesicle-mediated transport;0.0220060495634442!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0221023435724966!GO:0008408;3'-5' exonuclease activity;0.0223022929171128!GO:0009119;ribonucleoside metabolic process;0.0223856840526693!GO:0016407;acetyltransferase activity;0.0225289767839891!GO:0016311;dephosphorylation;0.0229025546364718!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0230356779822408!GO:0045039;protein import into mitochondrial inner membrane;0.0230356779822408!GO:0000781;chromosome, telomeric region;0.0232455553678742!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0234901654997672!GO:0010257;NADH dehydrogenase complex assembly;0.0234901654997672!GO:0033108;mitochondrial respiratory chain complex assembly;0.0234901654997672!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0236372654513562!GO:0006220;pyrimidine nucleotide metabolic process;0.0237430036592147!GO:0007004;telomere maintenance via telomerase;0.0238236897230108!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0239426414353478!GO:0006417;regulation of translation;0.0241541915328643!GO:0044433;cytoplasmic vesicle part;0.0244047333694924!GO:0000086;G2/M transition of mitotic cell cycle;0.0250139421830557!GO:0048468;cell development;0.0250380316569871!GO:0008017;microtubule binding;0.0250593966703515!GO:0008361;regulation of cell size;0.0251115668285475!GO:0030496;midbody;0.0251325852770869!GO:0030518;steroid hormone receptor signaling pathway;0.0252805573318995!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0253177957206958!GO:0050749;apolipoprotein E receptor binding;0.0256037702154976!GO:0012506;vesicle membrane;0.0256037702154976!GO:0035267;NuA4 histone acetyltransferase complex;0.0256073168021807!GO:0008637;apoptotic mitochondrial changes;0.0261418821655162!GO:0006650;glycerophospholipid metabolic process;0.0266515278826744!GO:0000123;histone acetyltransferase complex;0.0268905883945638!GO:0030145;manganese ion binding;0.0268905883945638!GO:0051656;establishment of organelle localization;0.0270306373925213!GO:0016791;phosphoric monoester hydrolase activity;0.0271034834885709!GO:0048037;cofactor binding;0.0271034834885709!GO:0043189;H4/H2A histone acetyltransferase complex;0.0275624785134572!GO:0042769;DNA damage response, detection of DNA damage;0.0275644233627967!GO:0005663;DNA replication factor C complex;0.0279157826368775!GO:0006807;nitrogen compound metabolic process;0.0281487494069406!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0281487494069406!GO:0015399;primary active transmembrane transporter activity;0.0281487494069406!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0281487494069406!GO:0030176;integral to endoplasmic reticulum membrane;0.0281878565180241!GO:0008538;proteasome activator activity;0.0284970850313566!GO:0045947;negative regulation of translational initiation;0.0293747876016345!GO:0019320;hexose catabolic process;0.0295871764937361!GO:0005652;nuclear lamina;0.030509003324338!GO:0007050;cell cycle arrest;0.0306456689990615!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0312519517619572!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0313036456770308!GO:0006733;oxidoreduction coenzyme metabolic process;0.03139612501581!GO:0043241;protein complex disassembly;0.031580390586454!GO:0000097;sulfur amino acid biosynthetic process;0.0316041662754515!GO:0004722;protein serine/threonine phosphatase activity;0.0319554128767897!GO:0046966;thyroid hormone receptor binding;0.0320655761385696!GO:0030137;COPI-coated vesicle;0.0326040988874295!GO:0008213;protein amino acid alkylation;0.0326079974524119!GO:0006479;protein amino acid methylation;0.0326079974524119!GO:0009124;nucleoside monophosphate biosynthetic process;0.0331598149099558!GO:0009123;nucleoside monophosphate metabolic process;0.0331598149099558!GO:0022411;cellular component disassembly;0.0333884232705452!GO:0031371;ubiquitin conjugating enzyme complex;0.0334315373467262!GO:0004680;casein kinase activity;0.0336939499669765!GO:0031902;late endosome membrane;0.0342260833485098!GO:0046164;alcohol catabolic process;0.0346385767023427!GO:0016049;cell growth;0.034818735641288!GO:0004523;ribonuclease H activity;0.0349815775325206!GO:0005784;translocon complex;0.0350625120739556!GO:0000910;cytokinesis;0.0355000743994097!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0358927688710261!GO:0006289;nucleotide-excision repair;0.0360460851626308!GO:0044450;microtubule organizing center part;0.0361056750498776!GO:0019783;small conjugating protein-specific protease activity;0.0361056750498776!GO:0008097;5S rRNA binding;0.0361056750498776!GO:0006979;response to oxidative stress;0.0362645203269325!GO:0006740;NADPH regeneration;0.0363130337368123!GO:0006098;pentose-phosphate shunt;0.0363130337368123!GO:0016408;C-acyltransferase activity;0.0364084733177848!GO:0016836;hydro-lyase activity;0.0370959803775356!GO:0009113;purine base biosynthetic process;0.0371623624076065!GO:0046426;negative regulation of JAK-STAT cascade;0.0375688126036611!GO:0046128;purine ribonucleoside metabolic process;0.0377687413304911!GO:0042278;purine nucleoside metabolic process;0.0377687413304911!GO:0030132;clathrin coat of coated pit;0.0380279496236551!GO:0003702;RNA polymerase II transcription factor activity;0.0385722823175166!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0387047034511589!GO:0043631;RNA polyadenylation;0.0391416875781412!GO:0009081;branched chain family amino acid metabolic process;0.0393508613684987!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0393508613684987!GO:0055083;monovalent inorganic anion homeostasis;0.0393508613684987!GO:0055064;chloride ion homeostasis;0.0393508613684987!GO:0030644;cellular chloride ion homeostasis;0.0393508613684987!GO:0017134;fibroblast growth factor binding;0.0393688274275658!GO:0043130;ubiquitin binding;0.0401368698307781!GO:0032182;small conjugating protein binding;0.0401368698307781!GO:0000175;3'-5'-exoribonuclease activity;0.0403737545034221!GO:0005666;DNA-directed RNA polymerase III complex;0.0405714112421248!GO:0050811;GABA receptor binding;0.0411252723062554!GO:0000118;histone deacetylase complex;0.0411485015937451!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0420221607034663!GO:0006278;RNA-dependent DNA replication;0.0421892390608543!GO:0050681;androgen receptor binding;0.042350740821468!GO:0016197;endosome transport;0.0432321659575333!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0433707090324984!GO:0000726;non-recombinational repair;0.0438334668655695!GO:0051053;negative regulation of DNA metabolic process;0.0439135792519454!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0439223090295705!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0442814088086725!GO:0051128;regulation of cellular component organization and biogenesis;0.0447541999825938!GO:0042026;protein refolding;0.0450410851270254!GO:0008610;lipid biosynthetic process;0.0454795289132868!GO:0008276;protein methyltransferase activity;0.0461052451915512!GO:0046489;phosphoinositide biosynthetic process;0.0471797301951422!GO:0008286;insulin receptor signaling pathway;0.0476286634106371!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.047818575939247!GO:0051100;negative regulation of binding;0.0479885236904828!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0495605763099754!GO:0006354;RNA elongation;0.0496110453997325!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0496215684676739!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0496215684676739!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0496215684676739 | |||
|sample_id=12823 | |sample_id=12823 | ||
|sample_note= | |sample_note= | ||
Line 74: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=unclassifiable | |sample_tissue=unclassifiable | ||
|time= day00 | |||
|timecourse=Embryoid_body_to_melanocyte | |||
|top_motifs=OCT4_SOX2{dimer}:2.92887548703;PATZ1:1.87118660429;POU2F1..3:1.7397267365;T:1.7115582166;SP1:1.59091319365;SNAI1..3:1.55312543437;GFI1:1.486869906;E2F1..5:1.4866702214;SOX{8,9,10}:1.40837676606;NFY{A,B,C}:1.3284124574;CUX2:1.26557392834;PBX1:1.25348011713;XCPE1{core}:1.24043788727;TBP:1.17624110018;ZEB1:1.1556907747;MZF1:1.13883853981;PAX1,9:1.08558150578;TFDP1:1.08472408306;RBPJ:1.04917537853;ONECUT1,2:1.048923579;MAZ:1.03793558933;ZIC1..3:0.984856832339;SOX2:0.970320166364;LEF1_TCF7_TCF7L1,2:0.967410547238;ZNF143:0.965409718204;AIRE:0.876715462348;RREB1:0.873447530344;MYOD1:0.845096640323;VSX1,2:0.840514506489;SOX17:0.839321910348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.832918162766;EBF1:0.823537264569;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.807669212062;LMO2:0.797097877754;POU5F1:0.791788612728;ZNF384:0.786096338802;FOXD3:0.772771051281;IKZF2:0.767717078906;TOPORS:0.76732385604;STAT1,3:0.765014922667;bHLH_family:0.760560162314;HNF4A_NR2F1,2:0.735431125689;RORA:0.713854091899;POU3F1..4:0.707188716433;FOXM1:0.598866783904;KLF4:0.595780454506;NKX2-3_NKX2-5:0.590219738287;EVI1:0.586306159649;NANOG:0.555539697949;HOX{A4,D4}:0.554788232361;STAT5{A,B}:0.55273208089;YY1:0.546393999669;CRX:0.53890633021;NRF1:0.49499657905;ALX1:0.4892560939;CDC5L:0.474074761723;HNF1A:0.473498706488;CDX1,2,4:0.472000782657;HIF1A:0.469336340008;EN1,2:0.377136295944;UFEwm:0.354042940249;MYB:0.346840403879;HAND1,2:0.345943234089;ATF4:0.334384065084;NR1H4:0.32830578673;TP53:0.315581553811;MTF1:0.306118386975;HOX{A5,B5}:0.295607213342;HOX{A6,A7,B6,B7}:0.269120093893;ELK1,4_GABP{A,B1}:0.185610570925;GTF2I:0.179321510336;ZNF423:0.172551287021;REST:0.170051378626;ZBTB6:0.125246515407;HIC1:0.11901889041;BREu{core}:0.113085728876;ESRRA:0.0839579667212;GATA6:0.0820931647185;ZFP161:0.0591298670525;FOX{I1,J2}:0.0511409343624;FOXQ1:0.0168228926272;MYFfamily:0.0158207998724;EGR1..3:0.0154196588161;ADNP_IRX_SIX_ZHX:0.00637689710571;PITX1..3:-0.00341609135385;PRDM1:-0.0131070831474;GTF2A1,2:-0.0168217389662;RXR{A,B,G}:-0.0182246212096;TBX4,5:-0.0187811843007;FOXN1:-0.0256823932399;SREBF1,2:-0.0295332780359;LHX3,4:-0.0308175478456;TFAP2B:-0.0344069150917;NKX6-1,2:-0.0467536550408;PAX5:-0.0552618095769;FOX{F1,F2,J1}:-0.0777372939374;RXRA_VDR{dimer}:-0.087157825682;ZBTB16:-0.0983292194934;NHLH1,2:-0.115980512267;PRRX1,2:-0.11686605281;NANOG{mouse}:-0.121637186439;ZNF148:-0.127682292982;SOX5:-0.145139569353;POU6F1:-0.155761901499;GCM1,2:-0.172513506194;JUN:-0.184263431898;TEF:-0.185102137918;TEAD1:-0.18516504632;MTE{core}:-0.192627172885;SRF:-0.213960877795;XBP1:-0.236330885403;TFCP2:-0.240435207357;IKZF1:-0.251384344584;MED-1{core}:-0.270495072129;NR5A1,2:-0.276877611566;GFI1B:-0.285347985206;NFE2L2:-0.293651445385;NKX2-2,8:-0.294034926298;PAX2:-0.297693476072;ALX4:-0.31821552214;FOXA2:-0.328792644314;NFKB1_REL_RELA:-0.341148686437;PPARG:-0.353523600095;FOXP1:-0.356844234844;NKX2-1,4:-0.372271627492;PAX4:-0.388636709375;TFAP2{A,C}:-0.39503445316;NKX3-2:-0.407920567974;PAX8:-0.413509378892;DBP:-0.418021288585;POU1F1:-0.440047014386;ESR1:-0.447224050544;GATA4:-0.462558967345;FOXP3:-0.474992528708;RFX1:-0.488282876217;NFE2:-0.494402926402;MEF2{A,B,C,D}:-0.508822800928;TFAP4:-0.511705414939;FOSL2:-0.540275168588;BACH2:-0.542716278319;MYBL2:-0.573176241441;FOS_FOS{B,L1}_JUN{B,D}:-0.580087540763;ZNF238:-0.582836105157;NKX3-1:-0.583381263956;ATF2:-0.586090192316;FOXL1:-0.593993877109;NFE2L1:-0.602714327181;CREB1:-0.607679007687;HMX1:-0.618783041301;SPZ1:-0.625611708384;NR6A1:-0.630150660647;ATF5_CREB3:-0.651428907706;HES1:-0.673025623574;SPI1:-0.68731853351;NR3C1:-0.701358596547;HLF:-0.719435044091;RUNX1..3:-0.741127705499;HSF1,2:-0.752597193236;HMGA1,2:-0.773138953175;SPIB:-0.831046809801;AHR_ARNT_ARNT2:-0.832237449524;AR:-0.855412863199;BPTF:-0.878284190527;ARID5B:-0.880426022023;ELF1,2,4:-0.888437602879;FOXO1,3,4:-0.946432900137;DMAP1_NCOR{1,2}_SMARC:-0.960438894023;NFIX:-0.96078242822;ETS1,2:-1.02457444001;TLX2:-1.02704725348;FOX{D1,D2}:-1.03159784539;GZF1:-1.06341404887;CEBPA,B_DDIT3:-1.06362354137;TLX1..3_NFIC{dimer}:-1.12161256891;PAX3,7:-1.16236750891;IRF7:-1.19272913499;ATF6:-1.20170769835;RFX2..5_RFXANK_RFXAP:-1.23547667462;IRF1,2:-1.24064898935;NFIL3:-1.2568222898;NFATC1..3:-1.28719306556;HOXA9_MEIS1:-1.29723849069;HBP1_HMGB_SSRP1_UBTF:-1.34870373981;TAL1_TCF{3,4,12}:-1.39133392287;GLI1..3:-1.46840591933;PAX6:-1.54738661026;EP300:-1.54939055176;MAFB:-1.61967375282;TGIF1:-1.63206837288;STAT2,4,6:-1.65486647113;SMAD1..7,9:-1.67551311617;PDX1:-1.72985195701 | |top_motifs=OCT4_SOX2{dimer}:2.92887548703;PATZ1:1.87118660429;POU2F1..3:1.7397267365;T:1.7115582166;SP1:1.59091319365;SNAI1..3:1.55312543437;GFI1:1.486869906;E2F1..5:1.4866702214;SOX{8,9,10}:1.40837676606;NFY{A,B,C}:1.3284124574;CUX2:1.26557392834;PBX1:1.25348011713;XCPE1{core}:1.24043788727;TBP:1.17624110018;ZEB1:1.1556907747;MZF1:1.13883853981;PAX1,9:1.08558150578;TFDP1:1.08472408306;RBPJ:1.04917537853;ONECUT1,2:1.048923579;MAZ:1.03793558933;ZIC1..3:0.984856832339;SOX2:0.970320166364;LEF1_TCF7_TCF7L1,2:0.967410547238;ZNF143:0.965409718204;AIRE:0.876715462348;RREB1:0.873447530344;MYOD1:0.845096640323;VSX1,2:0.840514506489;SOX17:0.839321910348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.832918162766;EBF1:0.823537264569;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.807669212062;LMO2:0.797097877754;POU5F1:0.791788612728;ZNF384:0.786096338802;FOXD3:0.772771051281;IKZF2:0.767717078906;TOPORS:0.76732385604;STAT1,3:0.765014922667;bHLH_family:0.760560162314;HNF4A_NR2F1,2:0.735431125689;RORA:0.713854091899;POU3F1..4:0.707188716433;FOXM1:0.598866783904;KLF4:0.595780454506;NKX2-3_NKX2-5:0.590219738287;EVI1:0.586306159649;NANOG:0.555539697949;HOX{A4,D4}:0.554788232361;STAT5{A,B}:0.55273208089;YY1:0.546393999669;CRX:0.53890633021;NRF1:0.49499657905;ALX1:0.4892560939;CDC5L:0.474074761723;HNF1A:0.473498706488;CDX1,2,4:0.472000782657;HIF1A:0.469336340008;EN1,2:0.377136295944;UFEwm:0.354042940249;MYB:0.346840403879;HAND1,2:0.345943234089;ATF4:0.334384065084;NR1H4:0.32830578673;TP53:0.315581553811;MTF1:0.306118386975;HOX{A5,B5}:0.295607213342;HOX{A6,A7,B6,B7}:0.269120093893;ELK1,4_GABP{A,B1}:0.185610570925;GTF2I:0.179321510336;ZNF423:0.172551287021;REST:0.170051378626;ZBTB6:0.125246515407;HIC1:0.11901889041;BREu{core}:0.113085728876;ESRRA:0.0839579667212;GATA6:0.0820931647185;ZFP161:0.0591298670525;FOX{I1,J2}:0.0511409343624;FOXQ1:0.0168228926272;MYFfamily:0.0158207998724;EGR1..3:0.0154196588161;ADNP_IRX_SIX_ZHX:0.00637689710571;PITX1..3:-0.00341609135385;PRDM1:-0.0131070831474;GTF2A1,2:-0.0168217389662;RXR{A,B,G}:-0.0182246212096;TBX4,5:-0.0187811843007;FOXN1:-0.0256823932399;SREBF1,2:-0.0295332780359;LHX3,4:-0.0308175478456;TFAP2B:-0.0344069150917;NKX6-1,2:-0.0467536550408;PAX5:-0.0552618095769;FOX{F1,F2,J1}:-0.0777372939374;RXRA_VDR{dimer}:-0.087157825682;ZBTB16:-0.0983292194934;NHLH1,2:-0.115980512267;PRRX1,2:-0.11686605281;NANOG{mouse}:-0.121637186439;ZNF148:-0.127682292982;SOX5:-0.145139569353;POU6F1:-0.155761901499;GCM1,2:-0.172513506194;JUN:-0.184263431898;TEF:-0.185102137918;TEAD1:-0.18516504632;MTE{core}:-0.192627172885;SRF:-0.213960877795;XBP1:-0.236330885403;TFCP2:-0.240435207357;IKZF1:-0.251384344584;MED-1{core}:-0.270495072129;NR5A1,2:-0.276877611566;GFI1B:-0.285347985206;NFE2L2:-0.293651445385;NKX2-2,8:-0.294034926298;PAX2:-0.297693476072;ALX4:-0.31821552214;FOXA2:-0.328792644314;NFKB1_REL_RELA:-0.341148686437;PPARG:-0.353523600095;FOXP1:-0.356844234844;NKX2-1,4:-0.372271627492;PAX4:-0.388636709375;TFAP2{A,C}:-0.39503445316;NKX3-2:-0.407920567974;PAX8:-0.413509378892;DBP:-0.418021288585;POU1F1:-0.440047014386;ESR1:-0.447224050544;GATA4:-0.462558967345;FOXP3:-0.474992528708;RFX1:-0.488282876217;NFE2:-0.494402926402;MEF2{A,B,C,D}:-0.508822800928;TFAP4:-0.511705414939;FOSL2:-0.540275168588;BACH2:-0.542716278319;MYBL2:-0.573176241441;FOS_FOS{B,L1}_JUN{B,D}:-0.580087540763;ZNF238:-0.582836105157;NKX3-1:-0.583381263956;ATF2:-0.586090192316;FOXL1:-0.593993877109;NFE2L1:-0.602714327181;CREB1:-0.607679007687;HMX1:-0.618783041301;SPZ1:-0.625611708384;NR6A1:-0.630150660647;ATF5_CREB3:-0.651428907706;HES1:-0.673025623574;SPI1:-0.68731853351;NR3C1:-0.701358596547;HLF:-0.719435044091;RUNX1..3:-0.741127705499;HSF1,2:-0.752597193236;HMGA1,2:-0.773138953175;SPIB:-0.831046809801;AHR_ARNT_ARNT2:-0.832237449524;AR:-0.855412863199;BPTF:-0.878284190527;ARID5B:-0.880426022023;ELF1,2,4:-0.888437602879;FOXO1,3,4:-0.946432900137;DMAP1_NCOR{1,2}_SMARC:-0.960438894023;NFIX:-0.96078242822;ETS1,2:-1.02457444001;TLX2:-1.02704725348;FOX{D1,D2}:-1.03159784539;GZF1:-1.06341404887;CEBPA,B_DDIT3:-1.06362354137;TLX1..3_NFIC{dimer}:-1.12161256891;PAX3,7:-1.16236750891;IRF7:-1.19272913499;ATF6:-1.20170769835;RFX2..5_RFXANK_RFXAP:-1.23547667462;IRF1,2:-1.24064898935;NFIL3:-1.2568222898;NFATC1..3:-1.28719306556;HOXA9_MEIS1:-1.29723849069;HBP1_HMGB_SSRP1_UBTF:-1.34870373981;TAL1_TCF{3,4,12}:-1.39133392287;GLI1..3:-1.46840591933;PAX6:-1.54738661026;EP300:-1.54939055176;MAFB:-1.61967375282;TGIF1:-1.63206837288;STAT2,4,6:-1.65486647113;SMAD1..7,9:-1.67551311617;PDX1:-1.72985195701 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12823-136I6;search_select_hide=table117:FF:12823-136I6 | |||
}} | }} |
Latest revision as of 18:45, 4 June 2020
Name: | H9 Embryoid body cells, melanocytic induction |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12908 |
Sample type: | time courses |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12908
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12908
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.122 |
10 | 10 | 0.0207 |
100 | 100 | 0.952 |
101 | 101 | 0.461 |
102 | 102 | 0.75 |
103 | 103 | 0.173 |
104 | 104 | 0.602 |
105 | 105 | 0.132 |
106 | 106 | 0.0838 |
107 | 107 | 0.5 |
108 | 108 | 0.904 |
109 | 109 | 0.233 |
11 | 11 | 0.202 |
110 | 110 | 0.337 |
111 | 111 | 0.0113 |
112 | 112 | 0.45 |
113 | 113 | 0.238 |
114 | 114 | 0.0117 |
115 | 115 | 0.295 |
116 | 116 | 0.836 |
117 | 117 | 0.15 |
118 | 118 | 0.604 |
119 | 119 | 0.196 |
12 | 12 | 0.912 |
120 | 120 | 0.373 |
121 | 121 | 0.78 |
122 | 122 | 0.993 |
123 | 123 | 0.0967 |
124 | 124 | 0.157 |
125 | 125 | 0.609 |
126 | 126 | 0.581 |
127 | 127 | 0.576 |
128 | 128 | 0.749 |
129 | 129 | 0.383 |
13 | 13 | 0.722 |
130 | 130 | 0.316 |
131 | 131 | 0.906 |
132 | 132 | 0.902 |
133 | 133 | 0.0956 |
134 | 134 | 0.478 |
135 | 135 | 0.0266 |
136 | 136 | 0.122 |
137 | 137 | 0.303 |
138 | 138 | 0.0851 |
139 | 139 | 0.00285 |
14 | 14 | 0.556 |
140 | 140 | 0.329 |
141 | 141 | 0.3 |
142 | 142 | 0.606 |
143 | 143 | 0.00261 |
144 | 144 | 0.756 |
145 | 145 | 0.522 |
146 | 146 | 0.471 |
147 | 147 | 0.843 |
148 | 148 | 0.049 |
149 | 149 | 0.0242 |
15 | 15 | 0.0472 |
150 | 150 | 0.551 |
151 | 151 | 0.0828 |
152 | 152 | 0.943 |
153 | 153 | 0.407 |
154 | 154 | 0.222 |
155 | 155 | 0.874 |
156 | 156 | 0.447 |
157 | 157 | 0.806 |
158 | 158 | 0.246 |
159 | 159 | 0.514 |
16 | 16 | 0.425 |
160 | 160 | 0.581 |
161 | 161 | 0.919 |
162 | 162 | 0.383 |
163 | 163 | 0.446 |
164 | 164 | 0.186 |
165 | 165 | 0.297 |
166 | 166 | 0.754 |
167 | 167 | 0.0264 |
168 | 168 | 0.24 |
169 | 169 | 0.00223 |
17 | 17 | 0.349 |
18 | 18 | 0.285 |
19 | 19 | 0.257 |
2 | 2 | 0.611 |
20 | 20 | 0.643 |
21 | 21 | 0.479 |
22 | 22 | 0.18 |
23 | 23 | 0.0184 |
24 | 24 | 0.714 |
25 | 25 | 0.473 |
26 | 26 | 0.368 |
27 | 27 | 0.692 |
28 | 28 | 0.656 |
29 | 29 | 0.667 |
3 | 3 | 0.0722 |
30 | 30 | 0.664 |
31 | 31 | 0.865 |
32 | 32 | 0.0842 |
33 | 33 | 0.714 |
34 | 34 | 0.833 |
35 | 35 | 0.214 |
36 | 36 | 0.0613 |
37 | 37 | 0.356 |
38 | 38 | 0.286 |
39 | 39 | 0.606 |
4 | 4 | 0.79 |
40 | 40 | 0.833 |
41 | 41 | 0.11 |
42 | 42 | 0.259 |
43 | 43 | 0.0999 |
44 | 44 | 0.66 |
45 | 45 | 0.862 |
46 | 46 | 0.0706 |
47 | 47 | 0.753 |
48 | 48 | 0.693 |
49 | 49 | 0.0624 |
5 | 5 | 0.0948 |
50 | 50 | 0.928 |
51 | 51 | 0.776 |
52 | 52 | 0.669 |
53 | 53 | 0.239 |
54 | 54 | 0.546 |
55 | 55 | 0.0153 |
56 | 56 | 0.69 |
57 | 57 | 0.468 |
58 | 58 | 0.0616 |
59 | 59 | 0.458 |
6 | 6 | 0.862 |
60 | 60 | 0.182 |
61 | 61 | 0.866 |
62 | 62 | 0.0253 |
63 | 63 | 0.111 |
64 | 64 | 0.45 |
65 | 65 | 0.109 |
66 | 66 | 0.593 |
67 | 67 | 0.27 |
68 | 68 | 0.323 |
69 | 69 | 0.446 |
7 | 7 | 0.603 |
70 | 70 | 0.0233 |
71 | 71 | 0.0356 |
72 | 72 | 0.374 |
73 | 73 | 0.152 |
74 | 74 | 0.107 |
75 | 75 | 0.171 |
76 | 76 | 0.288 |
77 | 77 | 0.303 |
78 | 78 | 0.739 |
79 | 79 | 0.325 |
8 | 8 | 0.208 |
80 | 80 | 0.197 |
81 | 81 | 0.278 |
82 | 82 | 0.0763 |
83 | 83 | 0.287 |
84 | 84 | 0.942 |
85 | 85 | 0.0768 |
86 | 86 | 0.292 |
87 | 87 | 0.259 |
88 | 88 | 0.863 |
89 | 89 | 0.189 |
9 | 9 | 0.183 |
90 | 90 | 0.117 |
91 | 91 | 0.183 |
92 | 92 | 0.0268 |
93 | 93 | 0.424 |
94 | 94 | 0.0308 |
95 | 95 | 0.979 |
96 | 96 | 0.0133 |
97 | 97 | 0.583 |
98 | 98 | 0.287 |
99 | 99 | 0.326 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12908
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000532 human H9 Embryoid body cells 0 days after melanocytic induction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000034 (stem cell)
0000148 (melanocyte)
0002322 (embryonic stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000350 (experimentally modified sample)
0000334 (melanocytic induction sample)
0000380 (0 days sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000532 (human H9 Embryoid body cells 0 days after melanocytic induction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)