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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005086
|accession_numbers=CAGE;DRX008588;DRR009460;DRZ000885;DRZ002270;DRZ012235;DRZ013620
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000001,CL:0000010,CL:0000578
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001
|comment=Previously: UH-3, rep3. TODO: full classification
|comment=Previously: UH-3, rep3. TODO: full classification
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|donor=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg38.nobarcode.ctss.bed.gz
|id=FF:13366-143F9
|id=FF:13366-143F9
|is_a=EFO:0002091;;FF:0000210
|is_a=EFO:0002091;;FF:0000210
|name=HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)
|is_obsolete=
|library_id=CNhs13738
|library_id_phase_based=2:CNhs13738
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13366
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13366
|name=HES3-GFP Embryonic Stem cells, cardiomyocytic induction
|namespace=
|namespace=
|part_of=
|part_of=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=143
|rna_box=143
|rna_catalog_number=
|rna_catalog_number=
|rna_concentration=2.50
|rna_concentration=2.5
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=IV-3
|rna_lot_number=IV-3
Line 55: Line 77:
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=143F9
|rna_tube_id=143F9
|rna_weight_ug=5.00
|rna_weight_ug=5
|sample_age=
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.44623909061641e-261!GO:0043226;organelle;5.52250295682691e-219!GO:0043229;intracellular organelle;1.83019204730628e-218!GO:0043231;intracellular membrane-bound organelle;3.90843549759199e-210!GO:0043227;membrane-bound organelle;3.90843549759199e-210!GO:0005737;cytoplasm;1.2910619401865e-175!GO:0044422;organelle part;4.17917699712571e-162!GO:0044446;intracellular organelle part;1.15961542464387e-160!GO:0032991;macromolecular complex;3.73308899787822e-119!GO:0044444;cytoplasmic part;2.72549994266595e-115!GO:0005634;nucleus;2.59963916163412e-100!GO:0030529;ribonucleoprotein complex;4.08489393641166e-99!GO:0044238;primary metabolic process;5.57561955432494e-97!GO:0044237;cellular metabolic process;2.05892485056839e-96!GO:0043170;macromolecule metabolic process;2.06180281109669e-90!GO:0003723;RNA binding;1.98423719913347e-89!GO:0044428;nuclear part;6.80032401048211e-87!GO:0043233;organelle lumen;8.32778221513368e-85!GO:0031974;membrane-enclosed lumen;8.32778221513368e-85!GO:0005739;mitochondrion;9.40582999374555e-77!GO:0006396;RNA processing;1.28362155843725e-64!GO:0005515;protein binding;2.63646781763623e-63!GO:0043234;protein complex;8.43730789491083e-61!GO:0016043;cellular component organization and biogenesis;4.14004029755853e-57!GO:0005840;ribosome;5.86198995248664e-57!GO:0043283;biopolymer metabolic process;6.30082339839719e-57!GO:0031981;nuclear lumen;4.74644515776406e-53!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.66891441192568e-52!GO:0006412;translation;8.86510279056886e-52!GO:0044429;mitochondrial part;2.01364186602761e-51!GO:0043228;non-membrane-bound organelle;1.5245845073507e-50!GO:0043232;intracellular non-membrane-bound organelle;1.5245845073507e-50!GO:0006996;organelle organization and biogenesis;5.31625893423888e-50!GO:0006259;DNA metabolic process;7.62485646305466e-50!GO:0003735;structural constituent of ribosome;6.72182264203466e-49!GO:0016071;mRNA metabolic process;1.66245782647856e-47!GO:0010467;gene expression;6.31850268283897e-45!GO:0019538;protein metabolic process;2.08717322595791e-44!GO:0009058;biosynthetic process;6.22883224575913e-44!GO:0065003;macromolecular complex assembly;6.60630269214781e-44!GO:0033279;ribosomal subunit;1.62530105962599e-43!GO:0008380;RNA splicing;4.41129146429619e-43!GO:0044249;cellular biosynthetic process;4.41129146429619e-43!GO:0031967;organelle envelope;2.3624264297773e-42!GO:0031975;envelope;4.50380675565678e-42!GO:0031090;organelle membrane;9.69319899773299e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98353994940828e-40!GO:0006397;mRNA processing;2.38950582362904e-40!GO:0009059;macromolecule biosynthetic process;1.68242987393161e-39!GO:0022607;cellular component assembly;1.70256894722852e-39!GO:0044267;cellular protein metabolic process;1.12747143531154e-38!GO:0044260;cellular macromolecule metabolic process;1.80193285787438e-38!GO:0033036;macromolecule localization;8.37995553363621e-38!GO:0015031;protein transport;8.62651747052498e-38!GO:0046907;intracellular transport;3.82934154097371e-34!GO:0000166;nucleotide binding;9.78489612775069e-34!GO:0008104;protein localization;3.921736470592e-33!GO:0045184;establishment of protein localization;6.8837714612416e-33!GO:0003676;nucleic acid binding;4.77275162325785e-32!GO:0005829;cytosol;1.10816952944573e-31!GO:0005654;nucleoplasm;4.91161846194472e-31!GO:0005694;chromosome;9.66774772039646e-31!GO:0005681;spliceosome;1.67830632351239e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.95580916982686e-30!GO:0005740;mitochondrial envelope;3.7955130686917e-30!GO:0007049;cell cycle;4.99171525480097e-30!GO:0019866;organelle inner membrane;1.37404447978635e-29!GO:0044427;chromosomal part;4.9362538790887e-28!GO:0031966;mitochondrial membrane;6.84406550140746e-28!GO:0006974;response to DNA damage stimulus;7.93627963439759e-28!GO:0005743;mitochondrial inner membrane;9.25609826432873e-28!GO:0006886;intracellular protein transport;2.92323617113393e-26!GO:0051276;chromosome organization and biogenesis;1.11193219130092e-25!GO:0031980;mitochondrial lumen;4.83767222971491e-25!GO:0005759;mitochondrial matrix;4.83767222971491e-25!GO:0006281;DNA repair;1.2731564863304e-24!GO:0044451;nucleoplasm part;2.96633665493822e-24!GO:0044445;cytosolic part;7.08527797178966e-24!GO:0044455;mitochondrial membrane part;2.1633857171573e-23!GO:0005730;nucleolus;2.95104198375845e-23!GO:0000278;mitotic cell cycle;7.82012549322793e-23!GO:0032553;ribonucleotide binding;8.49515461618498e-23!GO:0032555;purine ribonucleotide binding;8.49515461618498e-23!GO:0016874;ligase activity;8.67214475601177e-23!GO:0015935;small ribosomal subunit;1.15523493594349e-22!GO:0016462;pyrophosphatase activity;1.5585525791629e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.95570812060277e-22!GO:0006119;oxidative phosphorylation;2.91249098179741e-22!GO:0051649;establishment of cellular localization;2.91249098179741e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91249098179741e-22!GO:0017076;purine nucleotide binding;4.15139464183895e-22!GO:0022402;cell cycle process;4.59918750596932e-22!GO:0015934;large ribosomal subunit;6.04147139404838e-22!GO:0017111;nucleoside-triphosphatase activity;8.37878255777751e-22!GO:0022618;protein-RNA complex assembly;1.95570466918182e-21!GO:0016070;RNA metabolic process;3.44047116808684e-21!GO:0051641;cellular localization;4.23307855167215e-21!GO:0006260;DNA replication;5.85598487152517e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;6.04852735582304e-20!GO:0005524;ATP binding;6.85179111714153e-20!GO:0022403;cell cycle phase;1.26592100018326e-19!GO:0000087;M phase of mitotic cell cycle;1.28741770361174e-19!GO:0051301;cell division;1.60683153790813e-19!GO:0006323;DNA packaging;2.59281638806395e-19!GO:0032559;adenyl ribonucleotide binding;3.08400817065187e-19!GO:0007067;mitosis;3.36724666818691e-19!GO:0044265;cellular macromolecule catabolic process;5.09464621659557e-19!GO:0006512;ubiquitin cycle;5.99626332408271e-19!GO:0042254;ribosome biogenesis and assembly;6.78999243348344e-19!GO:0030554;adenyl nucleotide binding;2.35032792304756e-18!GO:0008135;translation factor activity, nucleic acid binding;8.93422394412894e-18!GO:0009719;response to endogenous stimulus;1.78176915555139e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.73488132771587e-17!GO:0019941;modification-dependent protein catabolic process;4.50411602246354e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.50411602246354e-17!GO:0005761;mitochondrial ribosome;5.02248520446447e-17!GO:0000313;organellar ribosome;5.02248520446447e-17!GO:0044257;cellular protein catabolic process;6.87289809712175e-17!GO:0006511;ubiquitin-dependent protein catabolic process;7.09412366990013e-17!GO:0000279;M phase;8.81330225797808e-17!GO:0006457;protein folding;9.62617989104982e-17!GO:0065004;protein-DNA complex assembly;1.49535749772124e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76237292019897e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.09363287211075e-16!GO:0000375;RNA splicing, via transesterification reactions;2.09363287211075e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.09363287211075e-16!GO:0005746;mitochondrial respiratory chain;2.3249189759517e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.066916403804e-16!GO:0003954;NADH dehydrogenase activity;3.066916403804e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.066916403804e-16!GO:0043285;biopolymer catabolic process;3.92505814407459e-16!GO:0000785;chromatin;5.08043843998413e-16!GO:0009057;macromolecule catabolic process;6.70007118738927e-16!GO:0012505;endomembrane system;7.24565229128794e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.36408978205174e-16!GO:0006333;chromatin assembly or disassembly;4.41398455357961e-15!GO:0031965;nuclear membrane;5.51652151743032e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.24242506129999e-15!GO:0005643;nuclear pore;7.82708513772296e-15!GO:0044248;cellular catabolic process;7.96742961689119e-15!GO:0044453;nuclear membrane part;1.06532831056906e-14!GO:0006399;tRNA metabolic process;1.40788163730571e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46338913756079e-14!GO:0043412;biopolymer modification;2.31182481300597e-14!GO:0004386;helicase activity;3.40378895773711e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.2209596258305e-14!GO:0042773;ATP synthesis coupled electron transport;4.2209596258305e-14!GO:0006413;translational initiation;4.43981366692678e-14!GO:0030163;protein catabolic process;5.20298146867003e-14!GO:0006403;RNA localization;5.27517366272569e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.21288284850589e-14!GO:0045271;respiratory chain complex I;6.21288284850589e-14!GO:0005747;mitochondrial respiratory chain complex I;6.21288284850589e-14!GO:0042623;ATPase activity, coupled;6.75426765377409e-14!GO:0016887;ATPase activity;7.70913107504204e-14!GO:0050657;nucleic acid transport;8.87278504668659e-14!GO:0051236;establishment of RNA localization;8.87278504668659e-14!GO:0050658;RNA transport;8.87278504668659e-14!GO:0003743;translation initiation factor activity;9.12439083213461e-14!GO:0051186;cofactor metabolic process;9.66969967060817e-14!GO:0006364;rRNA processing;1.48081796173249e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.27071377969683e-13!GO:0016072;rRNA metabolic process;3.2362714530891e-13!GO:0006605;protein targeting;3.34069347640314e-13!GO:0006334;nucleosome assembly;3.63498664999067e-13!GO:0005635;nuclear envelope;4.71088031484953e-13!GO:0016604;nuclear body;9.85741549941037e-13!GO:0048770;pigment granule;9.85741549941037e-13!GO:0042470;melanosome;9.85741549941037e-13!GO:0031497;chromatin assembly;1.08405546033857e-12!GO:0005794;Golgi apparatus;1.15203898081891e-12!GO:0006446;regulation of translational initiation;3.12491453616817e-12!GO:0015630;microtubule cytoskeleton;4.93774576230611e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.94929096441453e-12!GO:0051028;mRNA transport;5.37332489934696e-12!GO:0008026;ATP-dependent helicase activity;6.65177579672304e-12!GO:0006464;protein modification process;7.3490285527011e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.1340712121391e-12!GO:0006732;coenzyme metabolic process;1.0438982100246e-11!GO:0046930;pore complex;1.18815627040559e-11!GO:0006261;DNA-dependent DNA replication;1.41895333560478e-11!GO:0051082;unfolded protein binding;1.47873819873302e-11!GO:0016607;nuclear speck;1.77709098685433e-11!GO:0065002;intracellular protein transport across a membrane;1.97781580056225e-11!GO:0008134;transcription factor binding;2.42782391579447e-11!GO:0006461;protein complex assembly;3.0561659857823e-11!GO:0008565;protein transporter activity;4.71943331725975e-11!GO:0048193;Golgi vesicle transport;5.03856238240198e-11!GO:0016740;transferase activity;5.35432254289265e-11!GO:0043687;post-translational protein modification;6.52606412363208e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.27507572632109e-11!GO:0004812;aminoacyl-tRNA ligase activity;9.27507572632109e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.27507572632109e-11!GO:0006913;nucleocytoplasmic transport;1.36742787428627e-10!GO:0043038;amino acid activation;1.81599498638324e-10!GO:0006418;tRNA aminoacylation for protein translation;1.81599498638324e-10!GO:0043039;tRNA aminoacylation;1.81599498638324e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.1276869994882e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.57012759215612e-10!GO:0051169;nuclear transport;3.50048468613479e-10!GO:0009259;ribonucleotide metabolic process;5.86398809750873e-10!GO:0000775;chromosome, pericentric region;6.05047896786627e-10!GO:0006163;purine nucleotide metabolic process;6.15273717831072e-10!GO:0006164;purine nucleotide biosynthetic process;7.09734087034595e-10!GO:0009260;ribonucleotide biosynthetic process;1.64184206260994e-09!GO:0008639;small protein conjugating enzyme activity;1.85834102197109e-09!GO:0004842;ubiquitin-protein ligase activity;3.06636373035568e-09!GO:0016779;nucleotidyltransferase activity;3.6603896516055e-09!GO:0009055;electron carrier activity;4.50561133211689e-09!GO:0016568;chromatin modification;5.0820811153436e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.38285828529303e-09!GO:0005783;endoplasmic reticulum;5.53259916007642e-09!GO:0051726;regulation of cell cycle;6.03973566564173e-09!GO:0000074;regulation of progression through cell cycle;8.04902476679825e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.55182550304317e-09!GO:0043566;structure-specific DNA binding;9.97333899251092e-09!GO:0009150;purine ribonucleotide metabolic process;1.07134801734102e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.30706899528202e-08!GO:0019787;small conjugating protein ligase activity;1.63126050816446e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.67928688478261e-08!GO:0009056;catabolic process;2.68549538731198e-08!GO:0000786;nucleosome;2.69167159123215e-08!GO:0008094;DNA-dependent ATPase activity;3.30016289094466e-08!GO:0005819;spindle;3.3489190076912e-08!GO:0003899;DNA-directed RNA polymerase activity;3.45811017557778e-08!GO:0005657;replication fork;3.72247398158777e-08!GO:0003697;single-stranded DNA binding;4.08082055718902e-08!GO:0007005;mitochondrion organization and biogenesis;5.43998707496478e-08!GO:0051188;cofactor biosynthetic process;7.32617077605672e-08!GO:0017038;protein import;1.18495808554467e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.18495808554467e-07!GO:0015986;ATP synthesis coupled proton transport;1.27890211635492e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.27890211635492e-07!GO:0009117;nucleotide metabolic process;1.39017015352191e-07!GO:0016192;vesicle-mediated transport;1.53896514726847e-07!GO:0009060;aerobic respiration;1.72168809054266e-07!GO:0043623;cellular protein complex assembly;1.77987359199179e-07!GO:0007051;spindle organization and biogenesis;2.08463904713544e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.30002812412621e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.30002812412621e-07!GO:0044432;endoplasmic reticulum part;2.30213357924288e-07!GO:0019829;cation-transporting ATPase activity;2.32997680993043e-07!GO:0016881;acid-amino acid ligase activity;2.76606393158962e-07!GO:0005813;centrosome;3.19406329144209e-07!GO:0045333;cellular respiration;4.01431661924223e-07!GO:0009141;nucleoside triphosphate metabolic process;4.372056262621e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.72335516276472e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.86432650872753e-07!GO:0000245;spliceosome assembly;5.11185796297058e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.30794742561333e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.30794742561333e-07!GO:0045259;proton-transporting ATP synthase complex;5.5873905413508e-07!GO:0007010;cytoskeleton organization and biogenesis;5.68947269068058e-07!GO:0032446;protein modification by small protein conjugation;6.46746581559059e-07!GO:0005815;microtubule organizing center;7.56012926882585e-07!GO:0009108;coenzyme biosynthetic process;8.95164352820208e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.06205535397524e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.06205535397524e-06!GO:0005762;mitochondrial large ribosomal subunit;1.18736611707213e-06!GO:0000315;organellar large ribosomal subunit;1.18736611707213e-06!GO:0016567;protein ubiquitination;1.26786544087375e-06!GO:0005793;ER-Golgi intermediate compartment;1.26786544087375e-06!GO:0051329;interphase of mitotic cell cycle;1.49862371677331e-06!GO:0006752;group transfer coenzyme metabolic process;1.77237497584472e-06!GO:0006754;ATP biosynthetic process;1.89673665778042e-06!GO:0006753;nucleoside phosphate metabolic process;1.89673665778042e-06!GO:0051325;interphase;2.2692142391571e-06!GO:0003712;transcription cofactor activity;2.37284317954456e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.44265176888634e-06!GO:0006302;double-strand break repair;2.53711940449568e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.64226167309203e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.16535125252947e-06!GO:0006099;tricarboxylic acid cycle;3.54529161271821e-06!GO:0046356;acetyl-CoA catabolic process;3.54529161271821e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.84463261028775e-06!GO:0044431;Golgi apparatus part;3.99363197229444e-06!GO:0006084;acetyl-CoA metabolic process;4.06659524137142e-06!GO:0046034;ATP metabolic process;4.93478457476268e-06!GO:0003924;GTPase activity;5.10950387528425e-06!GO:0048475;coated membrane;5.14048698480598e-06!GO:0030117;membrane coat;5.14048698480598e-06!GO:0003724;RNA helicase activity;5.36742733178628e-06!GO:0016853;isomerase activity;5.66020984327318e-06!GO:0000075;cell cycle checkpoint;5.91809400100705e-06!GO:0005667;transcription factor complex;6.13111289290412e-06!GO:0003690;double-stranded DNA binding;6.17932433690862e-06!GO:0006793;phosphorus metabolic process;6.72082387995083e-06!GO:0006796;phosphate metabolic process;6.72082387995083e-06!GO:0005525;GTP binding;6.98955037423334e-06!GO:0051427;hormone receptor binding;8.14108188238283e-06!GO:0005874;microtubule;8.91108715181098e-06!GO:0000314;organellar small ribosomal subunit;9.05964562084945e-06!GO:0005763;mitochondrial small ribosomal subunit;9.05964562084945e-06!GO:0051168;nuclear export;9.25818048637013e-06!GO:0003682;chromatin binding;9.83177164675368e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.05024345574005e-05!GO:0008033;tRNA processing;1.25728957823164e-05!GO:0006383;transcription from RNA polymerase III promoter;1.3019481753563e-05!GO:0007017;microtubule-based process;1.36951801567235e-05!GO:0016363;nuclear matrix;1.46088995044696e-05!GO:0008168;methyltransferase activity;1.52249139383583e-05!GO:0044452;nucleolar part;1.6029546924793e-05!GO:0000776;kinetochore;1.73246204362559e-05!GO:0035257;nuclear hormone receptor binding;1.87185614384815e-05!GO:0051052;regulation of DNA metabolic process;1.95907765466256e-05!GO:0006366;transcription from RNA polymerase II promoter;2.09682691069179e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.68753645548749e-05!GO:0006613;cotranslational protein targeting to membrane;3.01959018717693e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.25569614612888e-05!GO:0030120;vesicle coat;3.33185718289416e-05!GO:0030662;coated vesicle membrane;3.33185718289416e-05!GO:0003684;damaged DNA binding;3.55240323825839e-05!GO:0009109;coenzyme catabolic process;3.58356042887401e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.60127411648551e-05!GO:0005789;endoplasmic reticulum membrane;3.64920229211589e-05!GO:0016859;cis-trans isomerase activity;4.12385859225297e-05!GO:0003678;DNA helicase activity;4.58639137704931e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.66368805612748e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.70077915071867e-05!GO:0051246;regulation of protein metabolic process;5.05895822539574e-05!GO:0000151;ubiquitin ligase complex;5.26809049221729e-05!GO:0000059;protein import into nucleus, docking;5.44758256145721e-05!GO:0016787;hydrolase activity;5.61446673359572e-05!GO:0032561;guanyl ribonucleotide binding;5.98381594377554e-05!GO:0019001;guanyl nucleotide binding;5.98381594377554e-05!GO:0051187;cofactor catabolic process;6.13949281450163e-05!GO:0051170;nuclear import;6.23134053526873e-05!GO:0006839;mitochondrial transport;6.46961303059367e-05!GO:0009165;nucleotide biosynthetic process;6.71706505906254e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.87603273141038e-05!GO:0006310;DNA recombination;7.05223258478674e-05!GO:0000139;Golgi membrane;7.22733365941185e-05!GO:0006402;mRNA catabolic process;8.35742431849548e-05!GO:0016310;phosphorylation;9.2381956133459e-05!GO:0006520;amino acid metabolic process;9.40726404530609e-05!GO:0007059;chromosome segregation;9.42835147721161e-05!GO:0008654;phospholipid biosynthetic process;9.60353913973558e-05!GO:0051087;chaperone binding;0.000109957472271635!GO:0004298;threonine endopeptidase activity;0.000111282678341259!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00011549436317909!GO:0006606;protein import into nucleus;0.00011975028384529!GO:0043681;protein import into mitochondrion;0.000124826402600951!GO:0006730;one-carbon compound metabolic process;0.000134503945561301!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000150953868061913!GO:0005768;endosome;0.000162259435851892!GO:0008186;RNA-dependent ATPase activity;0.000175297199746442!GO:0009112;nucleobase metabolic process;0.00018176612206131!GO:0031252;leading edge;0.000185372825893166!GO:0006352;transcription initiation;0.000205743032294116!GO:0045454;cell redox homeostasis;0.000214066120355963!GO:0043021;ribonucleoprotein binding;0.000217247086942217!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000243962713143512!GO:0003729;mRNA binding;0.000243962713143512!GO:0031988;membrane-bound vesicle;0.000262449611014172!GO:0006414;translational elongation;0.000302479838743557!GO:0006612;protein targeting to membrane;0.000316933771326415!GO:0006401;RNA catabolic process;0.000358890499548569!GO:0007006;mitochondrial membrane organization and biogenesis;0.00036250698823255!GO:0016023;cytoplasmic membrane-bound vesicle;0.000392638452428338!GO:0030880;RNA polymerase complex;0.000408378538779592!GO:0005684;U2-dependent spliceosome;0.000425303866666692!GO:0032508;DNA duplex unwinding;0.000434016918535669!GO:0032392;DNA geometric change;0.000434016918535669!GO:0007052;mitotic spindle organization and biogenesis;0.00050307443811455!GO:0000049;tRNA binding;0.000520259352994789!GO:0009116;nucleoside metabolic process;0.000520259352994789!GO:0006338;chromatin remodeling;0.000535192396101357!GO:0051920;peroxiredoxin activity;0.000536548071918459!GO:0005769;early endosome;0.000537410666655731!GO:0004004;ATP-dependent RNA helicase activity;0.000542029662585646!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000544993431479069!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00057678010055138!GO:0008250;oligosaccharyl transferase complex;0.000579345868516599!GO:0015631;tubulin binding;0.00062175574686092!GO:0006284;base-excision repair;0.000635818948888632!GO:0046483;heterocycle metabolic process;0.000645116360055086!GO:0006144;purine base metabolic process;0.000647691523185707!GO:0006626;protein targeting to mitochondrion;0.000656305758700335!GO:0007093;mitotic cell cycle checkpoint;0.000671253665118727!GO:0032200;telomere organization and biogenesis;0.000686350063997141!GO:0000723;telomere maintenance;0.000686350063997141!GO:0032259;methylation;0.000689625781345496!GO:0006405;RNA export from nucleus;0.000701363065287771!GO:0007264;small GTPase mediated signal transduction;0.000720384003247666!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000721049031282546!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000736366073750369!GO:0031982;vesicle;0.000777154128617567!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000847967475903555!GO:0050794;regulation of cellular process;0.000858974996960037!GO:0005770;late endosome;0.000875135553652704!GO:0006268;DNA unwinding during replication;0.000875646227452585!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000880485151535491!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000880485151535491!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000880485151535491!GO:0006270;DNA replication initiation;0.000914914265161338!GO:0005798;Golgi-associated vesicle;0.0010005466579149!GO:0008652;amino acid biosynthetic process;0.00101428826865531!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00101923168109776!GO:0000428;DNA-directed RNA polymerase complex;0.00101923168109776!GO:0004576;oligosaccharyl transferase activity;0.00106584776172075!GO:0015980;energy derivation by oxidation of organic compounds;0.00121063024680079!GO:0031410;cytoplasmic vesicle;0.00122233480531489!GO:0043596;nuclear replication fork;0.00124077792341768!GO:0043414;biopolymer methylation;0.00124077792341768!GO:0046474;glycerophospholipid biosynthetic process;0.0012537162327897!GO:0005876;spindle microtubule;0.00125980822705633!GO:0006541;glutamine metabolic process;0.0012903516160091!GO:0012501;programmed cell death;0.0012999718074415!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00140569963162901!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00140569963162901!GO:0030036;actin cytoskeleton organization and biogenesis;0.0014791392340971!GO:0045786;negative regulation of progression through cell cycle;0.00148063366201202!GO:0005788;endoplasmic reticulum lumen;0.00157484559182608!GO:0006915;apoptosis;0.00163425803243834!GO:0004527;exonuclease activity;0.00170425131076689!GO:0006275;regulation of DNA replication;0.00184451687908311!GO:0000725;recombinational repair;0.00187215902699178!GO:0000724;double-strand break repair via homologous recombination;0.00187215902699178!GO:0003711;transcription elongation regulator activity;0.00190193520951065!GO:0008092;cytoskeletal protein binding;0.0019879815243426!GO:0005048;signal sequence binding;0.00201031247031462!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00204739631049994!GO:0040029;regulation of gene expression, epigenetic;0.00207927547752653!GO:0004518;nuclease activity;0.00213317578617605!GO:0000178;exosome (RNase complex);0.00221244266788277!GO:0030145;manganese ion binding;0.00228999738776229!GO:0044440;endosomal part;0.00233435925664458!GO:0010008;endosome membrane;0.00233435925664458!GO:0016272;prefoldin complex;0.00235391351169793!GO:0030027;lamellipodium;0.00241591515201213!GO:0016251;general RNA polymerase II transcription factor activity;0.00241591515201213!GO:0005885;Arp2/3 protein complex;0.00241591515201213!GO:0008287;protein serine/threonine phosphatase complex;0.00246398045740782!GO:0019752;carboxylic acid metabolic process;0.00251745825855147!GO:0006082;organic acid metabolic process;0.00254554258985546!GO:0051539;4 iron, 4 sulfur cluster binding;0.00257604688191444!GO:0003713;transcription coactivator activity;0.00262867198562767!GO:0048471;perinuclear region of cytoplasm;0.00271002712420818!GO:0016126;sterol biosynthetic process;0.00274594635814018!GO:0005758;mitochondrial intermembrane space;0.00305910732874116!GO:0048500;signal recognition particle;0.00308819292729366!GO:0006519;amino acid and derivative metabolic process;0.00309849044553594!GO:0051252;regulation of RNA metabolic process;0.00311784854931263!GO:0007088;regulation of mitosis;0.00321726425650864!GO:0000792;heterochromatin;0.00322487882713499!GO:0046467;membrane lipid biosynthetic process;0.00324811308389258!GO:0006611;protein export from nucleus;0.00326035166700288!GO:0000228;nuclear chromosome;0.00338914462103128!GO:0016491;oxidoreductase activity;0.0035377932693861!GO:0004674;protein serine/threonine kinase activity;0.00356397723511111!GO:0008312;7S RNA binding;0.00363268928442031!GO:0019843;rRNA binding;0.00363268928442031!GO:0031124;mRNA 3'-end processing;0.00363720972652573!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00380435940042469!GO:0009081;branched chain family amino acid metabolic process;0.00386053278284591!GO:0019222;regulation of metabolic process;0.00400485643509089!GO:0008022;protein C-terminus binding;0.00407323145864469!GO:0031970;organelle envelope lumen;0.00407323145864469!GO:0030029;actin filament-based process;0.00409080144085681!GO:0030867;rough endoplasmic reticulum membrane;0.00413031682277465!GO:0005905;coated pit;0.004189057357631!GO:0000922;spindle pole;0.0043757439115061!GO:0018196;peptidyl-asparagine modification;0.00466255022130107!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00466255022130107!GO:0000781;chromosome, telomeric region;0.0048031281518595!GO:0048487;beta-tubulin binding;0.00487801648991758!GO:0016407;acetyltransferase activity;0.00508622920080686!GO:0030118;clathrin coat;0.00511776826614793!GO:0016584;nucleosome positioning;0.00511997543742663!GO:0006695;cholesterol biosynthetic process;0.00520780934072466!GO:0043601;nuclear replisome;0.00522704788349718!GO:0030894;replisome;0.00522704788349718!GO:0030521;androgen receptor signaling pathway;0.00523661715068407!GO:0005741;mitochondrial outer membrane;0.00530180202847342!GO:0000096;sulfur amino acid metabolic process;0.00530180202847342!GO:0006007;glucose catabolic process;0.00535543333547544!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0054882944315216!GO:0042393;histone binding;0.0055823821403058!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00560849556346721!GO:0015002;heme-copper terminal oxidase activity;0.00560849556346721!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00560849556346721!GO:0004129;cytochrome-c oxidase activity;0.00560849556346721!GO:0008139;nuclear localization sequence binding;0.00567043400665045!GO:0009451;RNA modification;0.00579425132775933!GO:0019783;small conjugating protein-specific protease activity;0.00587083864562189!GO:0004003;ATP-dependent DNA helicase activity;0.00587083864562189!GO:0044262;cellular carbohydrate metabolic process;0.00587083864562189!GO:0008219;cell death;0.00591003516215209!GO:0016265;death;0.00591003516215209!GO:0000070;mitotic sister chromatid segregation;0.00593277105725186!GO:0031570;DNA integrity checkpoint;0.00593472845060179!GO:0006378;mRNA polyadenylation;0.00594960653194329!GO:0022890;inorganic cation transmembrane transporter activity;0.00612136867567093!GO:0000819;sister chromatid segregation;0.00616202383992783!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00632223109224221!GO:0006595;polyamine metabolic process;0.00633051561124278!GO:0044454;nuclear chromosome part;0.00634166110598385!GO:0000339;RNA cap binding;0.00634166110598385!GO:0033116;ER-Golgi intermediate compartment membrane;0.00659227767115781!GO:0006790;sulfur metabolic process;0.00670315455945813!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00692897864347671!GO:0045047;protein targeting to ER;0.00692897864347671!GO:0005791;rough endoplasmic reticulum;0.00694350904118432!GO:0004532;exoribonuclease activity;0.00719052204432211!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00719052204432211!GO:0007021;tubulin folding;0.00723406914917225!GO:0042802;identical protein binding;0.0072606429343861!GO:0009064;glutamine family amino acid metabolic process;0.00726630770224241!GO:0009303;rRNA transcription;0.00729354972230996!GO:0031577;spindle checkpoint;0.00731268117520158!GO:0000209;protein polyubiquitination;0.00741893130109811!GO:0035258;steroid hormone receptor binding;0.00750858916710107!GO:0000159;protein phosphatase type 2A complex;0.00757664828952773!GO:0006220;pyrimidine nucleotide metabolic process;0.00798402776990604!GO:0031072;heat shock protein binding;0.00798402776990604!GO:0009119;ribonucleoside metabolic process;0.00829405341630641!GO:0007004;telomere maintenance via telomerase;0.00829866696078232!GO:0044450;microtubule organizing center part;0.00830726821743926!GO:0051287;NAD binding;0.00832109881312789!GO:0005669;transcription factor TFIID complex;0.00850850406721284!GO:0005637;nuclear inner membrane;0.00856319941677199!GO:0051540;metal cluster binding;0.00863456373934933!GO:0051536;iron-sulfur cluster binding;0.00863456373934933!GO:0005832;chaperonin-containing T-complex;0.00871439336431915!GO:0019899;enzyme binding;0.00877069668959093!GO:0046966;thyroid hormone receptor binding;0.00881027352639636!GO:0031968;organelle outer membrane;0.00898056388872209!GO:0004843;ubiquitin-specific protease activity;0.00899097779808145!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00899097779808145!GO:0015399;primary active transmembrane transporter activity;0.00899097779808145!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00915161706797998!GO:0003746;translation elongation factor activity;0.00916913834467731!GO:0008601;protein phosphatase type 2A regulator activity;0.00917639744995484!GO:0006289;nucleotide-excision repair;0.00926105907623953!GO:0004722;protein serine/threonine phosphatase activity;0.00961402804768986!GO:0043022;ribosome binding;0.010303080503717!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.010467267554703!GO:0030663;COPI coated vesicle membrane;0.0105317685041659!GO:0030126;COPI vesicle coat;0.0105317685041659!GO:0030119;AP-type membrane coat adaptor complex;0.0105886458055339!GO:0005663;DNA replication factor C complex;0.0106996368536788!GO:0006650;glycerophospholipid metabolic process;0.0108731443849482!GO:0031123;RNA 3'-end processing;0.0110348949268072!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0112299040510345!GO:0043488;regulation of mRNA stability;0.0112299040510345!GO:0043487;regulation of RNA stability;0.0112299040510345!GO:0019867;outer membrane;0.0112299040510345!GO:0048523;negative regulation of cellular process;0.0114689435168045!GO:0051053;negative regulation of DNA metabolic process;0.0115800718215966!GO:0000726;non-recombinational repair;0.0116359452291307!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0118488866058724!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0120075466663399!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0122576655449501!GO:0004221;ubiquitin thiolesterase activity;0.0123431714416723!GO:0045947;negative regulation of translational initiation;0.0126021550773451!GO:0031324;negative regulation of cellular metabolic process;0.0130061003669608!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0130949070221391!GO:0042770;DNA damage response, signal transduction;0.013153023092864!GO:0008180;signalosome;0.0131589853103433!GO:0030658;transport vesicle membrane;0.0131589853103433!GO:0015992;proton transport;0.0135770275368942!GO:0001726;ruffle;0.013603763366589!GO:0009124;nucleoside monophosphate biosynthetic process;0.013603763366589!GO:0009123;nucleoside monophosphate metabolic process;0.013603763366589!GO:0006278;RNA-dependent DNA replication;0.013603763366589!GO:0030131;clathrin adaptor complex;0.0136752126571812!GO:0046489;phosphoinositide biosynthetic process;0.0139837262994525!GO:0006818;hydrogen transport;0.0143226897738026!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0143487439770634!GO:0006740;NADPH regeneration;0.0152942888545998!GO:0006098;pentose-phosphate shunt;0.0152942888545998!GO:0016301;kinase activity;0.0154794495115643!GO:0016311;dephosphorylation;0.0156532149169369!GO:0022884;macromolecule transmembrane transporter activity;0.0156532149169369!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0156532149169369!GO:0046365;monosaccharide catabolic process;0.0159672091839764!GO:0051789;response to protein stimulus;0.0165218982761882!GO:0006986;response to unfolded protein;0.0165218982761882!GO:0045045;secretory pathway;0.0165777540568285!GO:0000097;sulfur amino acid biosynthetic process;0.0168466297021043!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0168523647276116!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.017062534977337!GO:0050662;coenzyme binding;0.0171273521878747!GO:0016585;chromatin remodeling complex;0.0171604256945927!GO:0009892;negative regulation of metabolic process;0.0174969670823591!GO:0030496;midbody;0.01769386622296!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0177717727128623!GO:0050178;phenylpyruvate tautomerase activity;0.0177869396167536!GO:0000082;G1/S transition of mitotic cell cycle;0.0181770613806043!GO:0046128;purine ribonucleoside metabolic process;0.0181944520405234!GO:0042278;purine nucleoside metabolic process;0.0181944520405234!GO:0004523;ribonuclease H activity;0.0182498557082643!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0186580031501384!GO:0006891;intra-Golgi vesicle-mediated transport;0.0189335995976078!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0189335995976078!GO:0016563;transcription activator activity;0.0189335995976078!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0189565100717445!GO:0000123;histone acetyltransferase complex;0.0189714191252852!GO:0043284;biopolymer biosynthetic process;0.019109409886443!GO:0000910;cytokinesis;0.0192588401248883!GO:0005938;cell cortex;0.0194283939073718!GO:0043624;cellular protein complex disassembly;0.0196033581616092!GO:0008320;protein transmembrane transporter activity;0.0196595595353465!GO:0005996;monosaccharide metabolic process;0.0201080751700438!GO:0008610;lipid biosynthetic process;0.0204657624300791!GO:0005658;alpha DNA polymerase:primase complex;0.020720596084887!GO:0009161;ribonucleoside monophosphate metabolic process;0.0208155847519693!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0208155847519693!GO:0003714;transcription corepressor activity;0.0211731510586703!GO:0030134;ER to Golgi transport vesicle;0.0212048343476882!GO:0005666;DNA-directed RNA polymerase III complex;0.0212048343476882!GO:0035267;NuA4 histone acetyltransferase complex;0.0215673701236477!GO:0016835;carbon-oxygen lyase activity;0.0223572309417016!GO:0005875;microtubule associated complex;0.0224200453313071!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.022625074713299!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.022646078775297!GO:0045039;protein import into mitochondrial inner membrane;0.022646078775297!GO:0005732;small nucleolar ribonucleoprotein complex;0.0227354450801917!GO:0000077;DNA damage checkpoint;0.0227354450801917!GO:0006607;NLS-bearing substrate import into nucleus;0.0228088627334783!GO:0008408;3'-5' exonuclease activity;0.0230121824458117!GO:0030137;COPI-coated vesicle;0.0230287811580098!GO:0006091;generation of precursor metabolites and energy;0.0231928760138392!GO:0009083;branched chain family amino acid catabolic process;0.0232475623345242!GO:0030660;Golgi-associated vesicle membrane;0.0236727427135308!GO:0009113;purine base biosynthetic process;0.0239915911472398!GO:0030132;clathrin coat of coated pit;0.0252145052502212!GO:0019320;hexose catabolic process;0.0252145052502212!GO:0006406;mRNA export from nucleus;0.025422449474726!GO:0006376;mRNA splice site selection;0.0256267950945809!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256267950945809!GO:0030133;transport vesicle;0.0256785261661217!GO:0017134;fibroblast growth factor binding;0.0270609863216374!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270609863216374!GO:0016044;membrane organization and biogenesis;0.0271741093777895!GO:0042769;DNA damage response, detection of DNA damage;0.0275964292575123!GO:0001824;blastocyst development;0.0275964292575123!GO:0030384;phosphoinositide metabolic process;0.0276515549137764!GO:0016790;thiolester hydrolase activity;0.0277406498818278!GO:0006733;oxidoreduction coenzyme metabolic process;0.0277473983014193!GO:0043069;negative regulation of programmed cell death;0.0277509520487493!GO:0019318;hexose metabolic process;0.0278543042381256!GO:0000152;nuclear ubiquitin ligase complex;0.0280051080786162!GO:0006400;tRNA modification;0.0280097477443149!GO:0050789;regulation of biological process;0.0280125972007661!GO:0019904;protein domain specific binding;0.0280974070677702!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0291933097921188!GO:0010257;NADH dehydrogenase complex assembly;0.0291933097921188!GO:0033108;mitochondrial respiratory chain complex assembly;0.0291933097921188!GO:0005652;nuclear lamina;0.0292798227448742!GO:0008276;protein methyltransferase activity;0.0293478817785561!GO:0006301;postreplication repair;0.0301797047579977!GO:0046164;alcohol catabolic process;0.0303513470690136!GO:0046112;nucleobase biosynthetic process;0.0304766360443244!GO:0043631;RNA polyadenylation;0.0314841930125186!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0316164648026747!GO:0006892;post-Golgi vesicle-mediated transport;0.031654538695907!GO:0051320;S phase;0.0319348018729984!GO:0043066;negative regulation of apoptosis;0.0320346415173488!GO:0008017;microtubule binding;0.0325769140854758!GO:0005862;muscle thin filament tropomyosin;0.032929680361803!GO:0006096;glycolysis;0.032929680361803!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0329545322268194!GO:0008538;proteasome activator activity;0.0329545322268194!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.033359201972633!GO:0016791;phosphoric monoester hydrolase activity;0.033622892060546!GO:0030127;COPII vesicle coat;0.0340721294110595!GO:0012507;ER to Golgi transport vesicle membrane;0.0340721294110595!GO:0031369;translation initiation factor binding;0.0344867438693207!GO:0033170;DNA-protein loading ATPase activity;0.0345014063960937!GO:0003689;DNA clamp loader activity;0.0345014063960937!GO:0000790;nuclear chromatin;0.0346322014196739!GO:0005784;translocon complex;0.0346322014196739!GO:0006916;anti-apoptosis;0.0351899338600538!GO:0009066;aspartate family amino acid metabolic process;0.0355916286806504!GO:0000084;S phase of mitotic cell cycle;0.0365045439324836!GO:0000175;3'-5'-exoribonuclease activity;0.0365273951766136!GO:0031371;ubiquitin conjugating enzyme complex;0.0376312135925729!GO:0030518;steroid hormone receptor signaling pathway;0.0377333771587529!GO:0000287;magnesium ion binding;0.0384220484183446!GO:0008143;poly(A) binding;0.0384292895953904!GO:0032984;macromolecular complex disassembly;0.0388726050626376!GO:0048037;cofactor binding;0.039690015548349!GO:0012506;vesicle membrane;0.0403397789197168!GO:0030176;integral to endoplasmic reticulum membrane;0.0410357492650568!GO:0006610;ribosomal protein import into nucleus;0.0412637166573523!GO:0004239;methionyl aminopeptidase activity;0.0417947213423885!GO:0009308;amine metabolic process;0.0418249404731803!GO:0016564;transcription repressor activity;0.0418374318668484!GO:0003887;DNA-directed DNA polymerase activity;0.0427550406460703!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0440474266345575!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0447975314386898!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0447975314386898!GO:0008156;negative regulation of DNA replication;0.0451966585450748!GO:0008097;5S rRNA binding;0.0451966585450748!GO:0006767;water-soluble vitamin metabolic process;0.0458099131822773!GO:0050749;apolipoprotein E receptor binding;0.0459922010548629!GO:0003756;protein disulfide isomerase activity;0.0459922010548629!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0459922010548629!GO:0031503;protein complex localization;0.0462223197732603!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0462597388632958!GO:0008190;eukaryotic initiation factor 4E binding;0.0466092562433474!GO:0042791;5S class rRNA transcription;0.0468654536548592!GO:0000127;transcription factor TFIIIC complex;0.0468654536548592!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0468654536548592!GO:0016408;C-acyltransferase activity;0.0470924304609342!GO:0007018;microtubule-based movement;0.0473143426542825!GO:0043241;protein complex disassembly;0.0491263495594239!GO:0045815;positive regulation of gene expression, epigenetic;0.0495168783738648!GO:0006379;mRNA cleavage;0.0495168783738648!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0496191785878856
|sample_id=13366
|sample_id=13366
|sample_note=
|sample_note=
Line 75: Line 99:
|sample_strain=
|sample_strain=
|sample_tissue=
|sample_tissue=
|time= day00
|timecourse=ES_to_cardiomyocyte
|top_motifs=OCT4_SOX2{dimer}:3.77281606739;FOXP1:2.07880662674;POU2F1..3:1.98638301102;SOX{8,9,10}:1.92958890699;NFY{A,B,C}:1.88816117912;E2F1..5:1.85753925882;ALX1:1.805447928;ZBTB16:1.72235178578;NANOG:1.53984599861;IKZF2:1.44386965391;GFI1:1.41387794216;NKX6-1,2:1.41233514694;PBX1:1.39104944564;TOPORS:1.31109829985;SNAI1..3:1.23959873771;TFDP1:1.23350545488;CUX2:1.19969633057;RORA:1.18474058035;PITX1..3:1.17399932647;AIRE:1.16304389386;SOX2:1.1179340699;POU3F1..4:1.1164341977;SOX17:1.10154941969;POU1F1:1.05596397514;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03010642451;HOX{A4,D4}:1.02644614525;VSX1,2:1.00932175285;T:0.978278576928;CDX1,2,4:0.971553578565;SP1:0.950588457412;EVI1:0.928478232006;NRF1:0.913840385928;ZNF143:0.903419878803;PATZ1:0.901221297427;ZEB1:0.851131784654;STAT5{A,B}:0.804235442543;MYOD1:0.797208852391;ZIC1..3:0.769966224972;YY1:0.755277744923;PAX4:0.742653302109;ZNF384:0.72305727222;FOXQ1:0.672745359849;ARID5B:0.672326014644;ONECUT1,2:0.669250781362;FOXD3:0.653527221502;XCPE1{core}:0.6357907606;HOX{A6,A7,B6,B7}:0.627297140489;NKX3-1:0.599989181827;NKX2-3_NKX2-5:0.569654781531;POU6F1:0.557477466834;ELK1,4_GABP{A,B1}:0.557128193436;LEF1_TCF7_TCF7L1,2:0.55028681129;FOXM1:0.515819260384;BREu{core}:0.488850932352;HOXA9_MEIS1:0.483113829201;RBPJ:0.478309052246;ADNP_IRX_SIX_ZHX:0.470977342397;FOX{I1,J2}:0.445596198131;MZF1:0.42465435083;HOX{A5,B5}:0.393920538292;PAX1,9:0.387353946654;FOXL1:0.358410174762;MYB:0.340100171263;LHX3,4:0.325606969635;CRX:0.304692286776;FOXP3:0.280113434588;CDC5L:0.274517675855;POU5F1:0.258091766255;ATF4:0.237896950212;ZFP161:0.229989484758;MAZ:0.183546906263;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.17333603904;MYFfamily:0.156018409573;GFI1B:0.146496510015;bHLH_family:0.122472683337;GATA6:0.108602607599;GATA4:0.105395817456;FOXN1:0.10187683919;HMGA1,2:0.0946527488387;EN1,2:0.0915969510348;TEF:0.0696473370915;KLF4:0.0605207876398;UFEwm:0.0449946496806;REST:0.0248102497106;HNF1A:-0.00102813550127;HNF4A_NR2F1,2:-0.00511439946013;LMO2:-0.00558989127683;RREB1:-0.0193810597052;MTF1:-0.0329393086739;RXR{A,B,G}:-0.0654390573192;NKX2-1,4:-0.0662464926081;FOX{F1,F2,J1}:-0.0690596504246;PAX3,7:-0.0826515401692;PRRX1,2:-0.0914084547081;NR5A1,2:-0.11790263619;HIC1:-0.124704780787;EBF1:-0.129945485644;TBP:-0.145019286696;DBP:-0.154889196262;HAND1,2:-0.156788513078;TFAP2B:-0.168728501875;GTF2I:-0.17918248887;RFX1:-0.187150987049;HIF1A:-0.203322714542;PAX8:-0.208918212714;TP53:-0.229281317099;ESRRA:-0.234866582443;MTE{core}:-0.252243391243;PRDM1:-0.268012733605;MYBL2:-0.30653722335;EGR1..3:-0.309592783293;ZBTB6:-0.30968200655;NKX2-2,8:-0.310718440569;SREBF1,2:-0.319463371472;MEF2{A,B,C,D}:-0.338710859651;FOXA2:-0.349682340522;MED-1{core}:-0.358557957783;JUN:-0.368342978722;TEAD1:-0.368371027931;NANOG{mouse}:-0.373576341947;TBX4,5:-0.381832737416;ATF5_CREB3:-0.396500350209;PPARG:-0.410194418445;XBP1:-0.426706117584;DMAP1_NCOR{1,2}_SMARC:-0.446041530435;CREB1:-0.49574414589;BPTF:-0.512787331743;NR1H4:-0.515527884361;ESR1:-0.522073125608;AR:-0.52770169628;NKX3-2:-0.533663347652;NFE2L2:-0.539390279074;STAT1,3:-0.560752684951;NFKB1_REL_RELA:-0.577844141355;PAX2:-0.59421884198;RFX2..5_RFXANK_RFXAP:-0.595733550019;IKZF1:-0.611443498475;NHLH1,2:-0.626957923537;SPIB:-0.648418984606;PAX6:-0.655983379296;HBP1_HMGB_SSRP1_UBTF:-0.663727550754;PAX5:-0.668350064072;HSF1,2:-0.686942818271;GTF2A1,2:-0.695467724977;BACH2:-0.724116177063;FOS_FOS{B,L1}_JUN{B,D}:-0.752371198991;SPI1:-0.829025768667;NFIL3:-0.839576141802;NFE2:-0.852953757958;GCM1,2:-0.853858885408;TFAP2{A,C}:-0.877781600237;FOSL2:-0.889520741247;SOX5:-0.89715388406;SPZ1:-0.897968576627;SRF:-0.903383753335;TFAP4:-0.904049081184;FOXO1,3,4:-0.909552648149;RUNX1..3:-0.916653394731;ATF2:-0.921661934223;HLF:-0.929179568352;ALX4:-0.935497329684;NR3C1:-0.944753839295;CEBPA,B_DDIT3:-0.966907676114;HMX1:-0.969469109844;ZNF238:-0.971611624986;ELF1,2,4:-0.973211037217;RXRA_VDR{dimer}:-1.07634635121;AHR_ARNT_ARNT2:-1.0831495215;TAL1_TCF{3,4,12}:-1.0932664807;ZNF423:-1.12930107465;GZF1:-1.13311658576;FOX{D1,D2}:-1.13419152548;ETS1,2:-1.1404186134;NR6A1:-1.20270781694;ZNF148:-1.21024411164;HES1:-1.22295712641;NFE2L1:-1.25464027135;TFCP2:-1.33585004225;IRF1,2:-1.36371873866;IRF7:-1.37619229651;TLX1..3_NFIC{dimer}:-1.37854759566;SMAD1..7,9:-1.43791498256;TGIF1:-1.44215948357;PDX1:-1.51093050694;NFATC1..3:-1.59504273949;ATF6:-1.67317578243;STAT2,4,6:-1.68191100652;NFIX:-1.7055721214;EP300:-1.72956689394;GLI1..3:-1.79095345553;TLX2:-1.96888263137;MAFB:-2.03615324167
|top_motifs=OCT4_SOX2{dimer}:3.77281606739;FOXP1:2.07880662674;POU2F1..3:1.98638301102;SOX{8,9,10}:1.92958890699;NFY{A,B,C}:1.88816117912;E2F1..5:1.85753925882;ALX1:1.805447928;ZBTB16:1.72235178578;NANOG:1.53984599861;IKZF2:1.44386965391;GFI1:1.41387794216;NKX6-1,2:1.41233514694;PBX1:1.39104944564;TOPORS:1.31109829985;SNAI1..3:1.23959873771;TFDP1:1.23350545488;CUX2:1.19969633057;RORA:1.18474058035;PITX1..3:1.17399932647;AIRE:1.16304389386;SOX2:1.1179340699;POU3F1..4:1.1164341977;SOX17:1.10154941969;POU1F1:1.05596397514;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03010642451;HOX{A4,D4}:1.02644614525;VSX1,2:1.00932175285;T:0.978278576928;CDX1,2,4:0.971553578565;SP1:0.950588457412;EVI1:0.928478232006;NRF1:0.913840385928;ZNF143:0.903419878803;PATZ1:0.901221297427;ZEB1:0.851131784654;STAT5{A,B}:0.804235442543;MYOD1:0.797208852391;ZIC1..3:0.769966224972;YY1:0.755277744923;PAX4:0.742653302109;ZNF384:0.72305727222;FOXQ1:0.672745359849;ARID5B:0.672326014644;ONECUT1,2:0.669250781362;FOXD3:0.653527221502;XCPE1{core}:0.6357907606;HOX{A6,A7,B6,B7}:0.627297140489;NKX3-1:0.599989181827;NKX2-3_NKX2-5:0.569654781531;POU6F1:0.557477466834;ELK1,4_GABP{A,B1}:0.557128193436;LEF1_TCF7_TCF7L1,2:0.55028681129;FOXM1:0.515819260384;BREu{core}:0.488850932352;HOXA9_MEIS1:0.483113829201;RBPJ:0.478309052246;ADNP_IRX_SIX_ZHX:0.470977342397;FOX{I1,J2}:0.445596198131;MZF1:0.42465435083;HOX{A5,B5}:0.393920538292;PAX1,9:0.387353946654;FOXL1:0.358410174762;MYB:0.340100171263;LHX3,4:0.325606969635;CRX:0.304692286776;FOXP3:0.280113434588;CDC5L:0.274517675855;POU5F1:0.258091766255;ATF4:0.237896950212;ZFP161:0.229989484758;MAZ:0.183546906263;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.17333603904;MYFfamily:0.156018409573;GFI1B:0.146496510015;bHLH_family:0.122472683337;GATA6:0.108602607599;GATA4:0.105395817456;FOXN1:0.10187683919;HMGA1,2:0.0946527488387;EN1,2:0.0915969510348;TEF:0.0696473370915;KLF4:0.0605207876398;UFEwm:0.0449946496806;REST:0.0248102497106;HNF1A:-0.00102813550127;HNF4A_NR2F1,2:-0.00511439946013;LMO2:-0.00558989127683;RREB1:-0.0193810597052;MTF1:-0.0329393086739;RXR{A,B,G}:-0.0654390573192;NKX2-1,4:-0.0662464926081;FOX{F1,F2,J1}:-0.0690596504246;PAX3,7:-0.0826515401692;PRRX1,2:-0.0914084547081;NR5A1,2:-0.11790263619;HIC1:-0.124704780787;EBF1:-0.129945485644;TBP:-0.145019286696;DBP:-0.154889196262;HAND1,2:-0.156788513078;TFAP2B:-0.168728501875;GTF2I:-0.17918248887;RFX1:-0.187150987049;HIF1A:-0.203322714542;PAX8:-0.208918212714;TP53:-0.229281317099;ESRRA:-0.234866582443;MTE{core}:-0.252243391243;PRDM1:-0.268012733605;MYBL2:-0.30653722335;EGR1..3:-0.309592783293;ZBTB6:-0.30968200655;NKX2-2,8:-0.310718440569;SREBF1,2:-0.319463371472;MEF2{A,B,C,D}:-0.338710859651;FOXA2:-0.349682340522;MED-1{core}:-0.358557957783;JUN:-0.368342978722;TEAD1:-0.368371027931;NANOG{mouse}:-0.373576341947;TBX4,5:-0.381832737416;ATF5_CREB3:-0.396500350209;PPARG:-0.410194418445;XBP1:-0.426706117584;DMAP1_NCOR{1,2}_SMARC:-0.446041530435;CREB1:-0.49574414589;BPTF:-0.512787331743;NR1H4:-0.515527884361;ESR1:-0.522073125608;AR:-0.52770169628;NKX3-2:-0.533663347652;NFE2L2:-0.539390279074;STAT1,3:-0.560752684951;NFKB1_REL_RELA:-0.577844141355;PAX2:-0.59421884198;RFX2..5_RFXANK_RFXAP:-0.595733550019;IKZF1:-0.611443498475;NHLH1,2:-0.626957923537;SPIB:-0.648418984606;PAX6:-0.655983379296;HBP1_HMGB_SSRP1_UBTF:-0.663727550754;PAX5:-0.668350064072;HSF1,2:-0.686942818271;GTF2A1,2:-0.695467724977;BACH2:-0.724116177063;FOS_FOS{B,L1}_JUN{B,D}:-0.752371198991;SPI1:-0.829025768667;NFIL3:-0.839576141802;NFE2:-0.852953757958;GCM1,2:-0.853858885408;TFAP2{A,C}:-0.877781600237;FOSL2:-0.889520741247;SOX5:-0.89715388406;SPZ1:-0.897968576627;SRF:-0.903383753335;TFAP4:-0.904049081184;FOXO1,3,4:-0.909552648149;RUNX1..3:-0.916653394731;ATF2:-0.921661934223;HLF:-0.929179568352;ALX4:-0.935497329684;NR3C1:-0.944753839295;CEBPA,B_DDIT3:-0.966907676114;HMX1:-0.969469109844;ZNF238:-0.971611624986;ELF1,2,4:-0.973211037217;RXRA_VDR{dimer}:-1.07634635121;AHR_ARNT_ARNT2:-1.0831495215;TAL1_TCF{3,4,12}:-1.0932664807;ZNF423:-1.12930107465;GZF1:-1.13311658576;FOX{D1,D2}:-1.13419152548;ETS1,2:-1.1404186134;NR6A1:-1.20270781694;ZNF148:-1.21024411164;HES1:-1.22295712641;NFE2L1:-1.25464027135;TFCP2:-1.33585004225;IRF1,2:-1.36371873866;IRF7:-1.37619229651;TLX1..3_NFIC{dimer}:-1.37854759566;SMAD1..7,9:-1.43791498256;TGIF1:-1.44215948357;PDX1:-1.51093050694;NFATC1..3:-1.59504273949;ATF6:-1.67317578243;STAT2,4,6:-1.68191100652;NFIX:-1.7055721214;EP300:-1.72956689394;GLI1..3:-1.79095345553;TLX2:-1.96888263137;MAFB:-2.03615324167
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13366-143F9;search_select_hide=table117:FF:13366-143F9
}}
}}

Latest revision as of 18:57, 4 June 2020

Name:HES3-GFP Embryonic Stem cells, cardiomyocytic induction
Species:Human (Homo sapiens)
Library ID:CNhs13738
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeSELECT CELL TYPE
cell lineNA
companyNA
collaborationChristine Mummery/Robert Passier
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberIV-3
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005086
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13738 CAGE DRX008588 DRR009460
Accession ID Hg19

Library idBAMCTSS
CNhs13738 DRZ000885 DRZ002270
Accession ID Hg38

Library idBAMCTSS
CNhs13738 DRZ012235 DRZ013620
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
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C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13738

Jaspar motifP-value
MA0002.21.04136e-4
MA0003.10.0225
MA0004.10.696
MA0006.10.642
MA0007.10.977
MA0009.10.826
MA0014.10.561
MA0017.10.0983
MA0018.20.725
MA0019.10.457
MA0024.12.65553e-8
MA0025.10.156
MA0027.10.421
MA0028.10.174
MA0029.10.383
MA0030.10.0518
MA0031.10.0341
MA0035.20.94
MA0038.10.00522
MA0039.20.0738
MA0040.10.258
MA0041.10.189
MA0042.10.319
MA0043.10.4
MA0046.10.219
MA0047.20.0053
MA0048.10.213
MA0050.12.02751e-10
MA0051.11.82475e-6
MA0052.10.0313
MA0055.10.2
MA0057.10.204
MA0058.10.853
MA0059.10.641
MA0060.11.36805e-14
MA0061.10.00198
MA0062.20.849
MA0065.20.924
MA0066.10.352
MA0067.10.14
MA0068.16.0827e-4
MA0069.10.536
MA0070.10.48
MA0071.10.727
MA0072.10.749
MA0073.10.66
MA0074.10.345
MA0076.10.211
MA0077.10.0308
MA0078.10.391
MA0079.20.818
MA0080.22.89264e-12
MA0081.10.0222
MA0083.10.0145
MA0084.10.351
MA0087.10.29
MA0088.10.909
MA0090.10.273
MA0091.10.0199
MA0092.10.0678
MA0093.10.621
MA0099.21.47646e-21
MA0100.10.549
MA0101.10.0105
MA0102.22.31822e-5
MA0103.10.133
MA0104.20.526
MA0105.10.0171
MA0106.10.894
MA0107.10.00124
MA0108.20.222
MA0111.10.962
MA0112.21.60393e-4
MA0113.10.0032
MA0114.10.89
MA0115.10.468
MA0116.10.0421
MA0117.10.273
MA0119.10.0939
MA0122.10.739
MA0124.10.762
MA0125.10.0142
MA0131.10.492
MA0135.10.0426
MA0136.18.34286e-11
MA0137.20.00817
MA0138.20.511
MA0139.10.629
MA0140.10.623
MA0141.10.458
MA0142.11.59233e-12
MA0143.11.12184e-6
MA0144.10.00329
MA0145.10.174
MA0146.10.165
MA0147.10.514
MA0148.10.0162
MA0149.10.883
MA0150.19.38987e-5
MA0152.10.801
MA0153.10.333
MA0154.10.0174
MA0155.10.764
MA0156.13.85217e-7
MA0157.10.0452
MA0159.10.075
MA0160.10.266
MA0162.10.73
MA0163.19.65072e-4
MA0164.10.972
MA0258.10.0916
MA0259.10.581



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13738

Novel motifP-value
10.635
100.212
1000.388
1010.925
1020.836
1030.0632
1040.637
1050.117
1060.0188
1070.53
1080.825
1090.318
110.403
1100.467
1110.197
1120.343
1130.141
1140.0873
1150.749
1160.583
1170.525
1180.989
1190.453
120.725
1200.485
1210.554
1220.477
1230.0597
1240.453
1250.702
1260.304
1270.407
1280.583
1290.635
130.872
1300.903
1310.929
1320.762
1330.129
1340.588
1350.0143
1360.197
1370.223
1380.161
1390.164
140.856
1400.215
1410.955
1420.369
1430.0225
1440.513
1450.844
1460.52
1470.762
1480.0356
1490.0105
150.222
1500.605
1510.0823
1520.0756
1530.181
1540.488
1550.958
1560.426
1570.892
1580.432
1590.737
160.411
1600.353
1610.46
1620.195
1630.162
1640.502
1650.439
1660.733
1670.662
1680.0899
1690.00397
170.179
180.185
190.183
20.226
200.728
210.499
220.0513
230.00385
240.336
250.533
260.946
270.171
280.727
290.555
30.292
300.557
310.894
320.0187
330.935
340.571
350.718
360.557
370.217
380.315
390.422
40.592
400.818
410.0274
420.634
430.137
440.534
450.372
460.301
470.842
480.921
490.201
50.237
500.96
510.33
520.218
530.614
540.238
550.0774
560.665
570.676
580.102
590.0435
60.467
600.0475
610.85
620.0473
630.175
640.645
650.0488
660.487
670.574
680.716
690.469
70.722
700.039
710.0927
720.384
730.0461
740.645
750.24
760.771
770.151
780.708
790.23
80.59
800.0221
810.52
820.148
830.886
840.386
850.0242
860.483
870.383
880.874
890.121
90.0308
900.941
910.692
920.0798
930.135
940.197
950.501
960.179
970.652
980.56
990.562



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13738


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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