FF:457-17C6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005268 | ||
| | |accession_numbers=CAGE;DRX008976;DRR009850;DRZ001275;DRZ002658;DRZ012625;DRZ014008 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000299,FF:0011356 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.39!246.36!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!1.96!89.47!Nkx2-5;;chr8:59799772..59799789,+!p1@Hand2!1.78!162.91!Hand2;;chr5:77543897..77543911,-!p2@Hopx!1.74!101.04!Hopx;;chr6:97879817..97879857,+!p2@Mitf!1.61!39.65!Mitf;;chr14:63864056..63864102,-!p1@Gata4!1.59!64.33!Gata4;;chr10:22539932..22539956,-!p1@Tcf21!1.31!51.53!Tcf21;;chr5:77544108..77544119,-!p7@Hopx!1.27!17.43!Hopx;;chr14:63890491..63890516,-!p2@Gata4!1.24!16.35!Gata4;;chr1:189821714..189821761,+!p1@Esrrg!1.22!28.85!Esrrg;;chr11:101755669..101755686,-!p1@Meox1!1.22!27.77!Meox1;;chr5:77544170..77544181,-!p6@Hopx!1.22!15.58!Hopx;;chr5:120285144..120285160,+!p1@Tbx5!1.21!15.27!Tbx5;;chr9:87626083..87626108,-!p1@Tbx18!1.19!31.93!Tbx18;;chr2:120365588..120365602,-!p2@Zfp106!1.19!24.07!Zfp106;;chr10:30562571..30562597,-!p1@Hey2!1.17!32.70!Hey2;;chr7:119885539..119885574,+!p3@Tead1!1.16!13.58!Tead1;;chr7:17647736..17647772,-!p1@Hif3a!1.14!45.66!Hif3a;;chr17:26978521..26978536,-!p2@Nkx2-5!1.10!11.57!Nkx2-5;;chr14:63890459..63890484,-!p4@Gata4!1.08!11.11!Gata4;;chr14:63890660..63890687,-!p7@Gata4!1.06!10.49!Gata4;;chr10:12810631..12810649,+!p1@Plagl1!1.05!271.05!Plagl1;;chr5:24107779..24107825,-!p1@Smarcd3!0.98!58.78!Smarcd3;;chr13:73397958..73397994,+!p1@Irx4!0.98!8.64!Irx4;;chr14:63890691..63890718,-!p8@Gata4!0.98!8.64!Gata4;;chr18:11052485..11052508,+!p2@Gata6!0.97!23.76!Gata6;;chr5:77543935..77543947,-!p4@Hopx!0.96!8.18!Hopx;;chr18:11052642..11052659,+!p1@Gata6!0.92!38.10!Gata6;;chr4:148178559..148178603,+!p1@Casz1!0.92!21.75!Casz1;;chr18:11052456..11052477,+!p3@Gata6!0.91!22.83!Gata6;;chr4:150482563..150482655,-!p2@Camta1!0.89!24.99!Camta1;;chr2:180069370..180069409,-!p1@Gata5!0.87!7.56!Gata5;;chr14:63890519..63890539,-!p3@Gata4!0.87!6.48!Gata4;;chr14:64562503..64562524,+!p1@Sox7!0.85!37.64!Sox7;;chr7:6649134..6649167,-!p1@Zim1!0.84!34.40!Zim1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.83!126.19!Lrrfip1;;chr4:120488308..120488366,-!p1@Nfyc!0.83!35.64!Nfyc;;chr1:189432907..189432926,+!p3@Esrrg!0.83!5.71!Esrrg;;chr11:57645506..57645523,-!p1@Hand1!0.82!5.55!Hand1;;chr10:30562939..30562969,-!p5@Hey2!0.82!5.55!Hey2;;chr18:80909801..80909819,-!p1@Nfatc1!0.79!33.01!Nfatc1;;chr17:26978449..26978458,-!p3@Nkx2-5!0.77!4.94!Nkx2-5;;chr1:191994550..191994623,-!p1@Prox1!0.76!35.79!Prox1;;chr1:170362437..170362478,-!p5@Pbx1!0.75!15.58!Pbx1;;chr10:30562617..30562637,-!p2@Hey2!0.74!5.86!Hey2;;chr3:128917187..128917223,+!p2@Pitx2!0.74!5.40!Pitx2;;chr4:133109285..133109308,+!p1@Nr0b2!0.74!4.47!Nr0b2;;chr14:63890545..63890560,-!p5@Gata4!0.74!4.47!Gata4;;chr15:40486566..40486600,+!p1@Zfpm2!0.73!29.00!Zfpm2;;chr4:148178529..148178548,+!p3@Casz1!0.72!10.80!Casz1;;chr13:72766250..72766273,+!p1@Irx2!0.72!6.94!Irx2;;chr5:138187775..138187845,+!p7@Tsc22d4!0.72!6.02!Tsc22d4;;chr2:104966766..104966786,+!p1@Wt1!0.71!6.94!Wt1;;chr5:120285161..120285176,+!p2@Tbx5!0.71!4.17!Tbx5;;chr17:26978464..26978469,-!p4@Nkx2-5!0.70!4.01!Nkx2-5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.69!17.28!Ppp1r13l;;chr12:37835141..37835194,+!p1@Meox2!0.69!13.58!Meox2;;chr5:120285130..120285141,+!p3@Tbx5!0.69!3.86!Tbx5;;chr7:119822957..119822980,+!p2@Tead1!0.68!20.98!Tead1;;chr4:82151148..82151159,-!p5@Nfib!0.68!12.03!Nfib;;chr10:62327990..62328025,-!p2@Tet1!0.68!6.32!Tet1;;chr4:135129538..135129558,-!p1@Grhl3!0.68!6.02!Grhl3;;chr2:168415815..168415872,-!p1@Nfatc2!0.67!22.68!Nfatc2;;chr14:63864337..63864381,-!p6@Gata4!0.67!3.70!Gata4;;chr4:87452180..87452196,-!p3@Mllt3!0.65!7.56!Mllt3;;chr1:120879128..120879183,-!p3@Gli2!0.64!7.10!Gli2;;chr6:97879802..97879816,+!p5@Mitf!0.64!3.39!Mitf;;chr5:77524250..77524300,-!p1@Hopx!0.63!78.21!Hopx;;chr18:11052516..11052525,+!p5@Gata6!0.63!3.24!Gata6;;chr18:11052606..11052633,+!p4@Gata6!0.61!8.95!Gata6;;chr13:72766279..72766296,+!p2@Irx2!0.60!4.78!Irx2;;chr8:94325321..94325366,-!p1@Irx3!0.59!8.02!Irx3;;chr2:104966874..104966907,+!p2@Wt1!0.59!2.93!Wt1;;chr6:53523358..53523388,+!p1@Creb5!0.58!41.19!Creb5;;chr15:40486427..40486437,+!p5@Zfpm2!0.58!3.86!Zfpm2;;chr16:43363152..43363186,+!p3@Zbtb20!0.57!7.25!Zbtb20;;chrX:137135036..137135064,-!p4@Tsc22d3!0.57!6.02!Tsc22d3;;chr11:98789140..98789168,+!p5@Rara!0.57!4.78!Rara;;chr7:123174485..123174514,-!p6@Sox6!0.57!3.55!Sox6;;chr17:46693107..46693137,-!p1@Srf!0.56!31.62!Srf;;chr4:148275237..148275311,+!p2@Casz1!0.56!12.96!Casz1;;chr16:43503493..43503570,+!p9@Zbtb20!0.56!4.94!Zbtb20;;chr2:30700788..30700824,+!p2@Prrx2!0.56!4.47!Prrx2;;chr2:17976799..17976829,+!p5@Mllt10!0.56!3.39!Mllt10;;chr2:104966933..104966966,+!p3@Wt1!0.56!2.62!Wt1;;chrX:45245679..45245702,-!p1@Smarca1!0.55!14.04!Smarca1;;chr17:46693078..46693097,-!p3@Srf!0.55!12.50!Srf;;chr4:154010918..154010931,-!p1@Prdm16!0.55!8.95!Prdm16;;chr4:126703093..126703158,+!p3@Sfpq!0.55!8.64!Sfpq;;chr14:17407970..17408015,-!p2@Rarb!0.55!8.18!Rarb;;chr9:63869751..63869767,-!p1@Smad6!0.55!7.87!Smad6;;chr8:92872242..92872285,-!p1@Tox3!0.55!7.56!Tox3;;chr18:14130694..14130697,-!p2@Zfp521!0.55!6.94!Zfp521;;chr7:119822915..119822936,+!p5@Tead1!0.55!4.63!Tead1;;chr14:67853457..67853482,+!p2@Ebf2!0.55!3.86!Ebf2;;chr12:84828663..84828679,-!p1@Dpf3!0.54!23.91!Dpf3;;chrX:45245644..45245666,-!p2@Smarca1!0.54!9.56!Smarca1;;chr15:40486754..40486771,+!p2@Zfpm2!0.54!4.94!Zfpm2;;chr11:70043257..70043263,-!p1@Bcl6b!0.54!4.78!Bcl6b;;chr2:151969288..151969294,+!p1@Tcf15!0.54!4.17!Tcf15;;chr1:189432881..189432903,+!p2@Esrrg!0.54!2.47!Esrrg;;chr13:83663868..83663894,+!p2@Mef2c!0.53!43.81!Mef2c;;chr5:20387850..20387869,-!p1@Phtf2!0.53!31.01!Phtf2;;chr4:135840573..135840601,+!p1@Zfp46!0.53!24.07!Zfp46;;chr4:13712228..13712267,+!p3@Runx1t1!0.53!4.63!Runx1t1;;chr11:74981654..74981658,-!p1@Hic1!0.52!11.42!Hic1;;chr14:17407878..17407926,-!p1@Rarb!0.52!6.17!Rarb;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.52!3.86!Ppp1r13l;;chr7:17642018..17642045,-!p4@Hif3a!0.52!2.78!Hif3a;;chr3:66785857..66785873,-!p1@Shox2!0.52!2.31!Shox2;;chr2:105003277..105003280,+!p5@Wt1!0.52!2.31!Wt1;;chr1:191993385..191993405,-!p3@Prox1!0.52!2.31!Prox1;;chr10:92773591..92773623,-!p1@Elk3!0.51!64.95!Elk3;;chr12:34642510..34642530,+!p1@Twist1!0.51!8.79!Twist1;;chr7:74517982..74518012,-!p2@Mef2a!0.51!4.78!Mef2a;;chr8:123640063..123640077,+!p1@Foxc2!0.51!4.63!Foxc2;;chr12:37835203..37835218,+!p3@Meox2!0.51!2.78!Meox2;;chr7:74517658..74517731,-!p1@Mef2a!0.50!129.12!Mef2a;;chr12:39506873..39506913,+!p1@Etv1!0.50!29.16!Etv1;;chr5:77524304..77524315,-!p5@Hopx!0.50!5.40!Hopx;;chr7:17642053..17642066,-!p2@Hif3a!0.50!3.39!Hif3a;;chr4:82151126..82151133,-!p8@Nfib!0.50!3.09!Nfib;;chr10:12844757..12844771,+!p2@Plagl1!0.50!2.16!Plagl1;;chr13:83663902..83663927,+!p1@Mef2c!0.49!67.72!Mef2c;;chr7:52471143..52471186,+!p1@Tead2!0.49!29.47!Tead2;;chr8:81552216..81552249,+!p3@Zfp827!0.49!7.40!Zfp827;;chr13:72101161..72101177,-!p2@Irx1!0.49!3.24!Irx1;;chr8:94325814..94325839,-!p2@Irx3!0.48!5.09!Irx3;;chr4:108151497..108151514,+!p3@Zcchc11!0.48!4.78!Zcchc11;;chr9:63869834..63869849,-!p5@Smad6!0.48!4.01!Smad6;;chr8:94325847..94325869,-!p3@Irx3!0.48!3.70!Irx3;;chrX:103070839..103070856,-!p4@Atrx!0.48!3.55!Atrx;;chr7:123174606..123174636,-!p5@Sox6!0.48!2.78!Sox6;;chr4:82151178..82151262,-!p1@Nfib!0.47!108.60!Nfib;;chr4:126700722..126700753,+!p4@Sfpq!0.47!5.86!Sfpq;;chr10:62328047..62328076,-!p3@Tet1!0.47!3.39!Tet1;;chr4:3865501..3865548,-!p1@Plag1!0.46!12.96!Plag1;;chrX:103070746..103070764,-!p5@Atrx!0.46!3.24!Atrx;;chr9:32443818..32443854,+!p2@Ets1!0.45!10.80!Ets1;;chr7:144506077..144506128,-!p1@Ebf3!0.45!5.25!Ebf3;;chr7:4947625..4947634,-!p6@Zfp579!0.45!3.55!Zfp579;;chr15:40486615..40486628,+!p3@Zfpm2!0.45!3.39!Zfpm2;;chr13:72101178..72101203,-!p1@Irx1!0.45!3.24!Irx1;;chr15:85566184..85566238,+!p1@Ppara!0.45!3.09!Ppara;;chr3:128916868..128916890,+!p1@Pitx2!0.45!2.78!Pitx2;;chr18:65741358..65741415,+!p1@Zfp532!0.44!10.34!Zfp532;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.44!4.17!Gm8008;;chr2:30700881..30700916,+!p1@Prrx2!0.44!4.01!Prrx2;;chr16:95680889..95680991,-!p1@Erg!0.43!19.59!Erg;;chr1:193007123..193007139,-!p1@Atf3!0.43!12.96!Atf3;;chr9:63869890..63869908,-!p6@Smad6!0.43!2.47!Smad6;;chr9:87625998..87626007,-!p4@Tbx18!0.43!1.70!Tbx18;;chr1:189821700..189821713,+!p4@Esrrg!0.43!1.70!Esrrg;;chrX:58146612..58146615,-!p1@Sox3!0.43!1.70!Sox3;;chr3:98186461..98186476,+!p2@Zfp697!0.43!1.70!Zfp697;;chr13:73398004..73398017,+!p2@Irx4!0.43!1.70!Irx4;;chr6:37392095..37392154,-!p1@Creb3l2!0.42!74.51!Creb3l2;;chr4:97444012..97444045,+!p4@Nfia!0.42!17.43!Nfia;;chr6:53018700..53018759,-!p2@Jazf1!0.42!8.02!Jazf1;;chr16:43363190..43363242,+!p2@Zbtb20!0.42!6.63!Zbtb20;;chr6:99216488..99216534,-!p2@Foxp1!0.42!6.17!Foxp1;;chr4:126700650..126700678,+!p5@Sfpq!0.42!4.01!Sfpq;;chr18:14131045..14131062,-!p3@Zfp521!0.42!3.09!Zfp521;;chrX:103070960..103070973,-!p7@Atrx!0.42!2.47!Atrx;;chr15:40486883..40486903,+!p4@Zfpm2!0.42!2.47!Zfpm2;;chr2:181406327..181406350,-!p1@Sox18!0.41!72.04!Sox18;;chr4:82151274..82151290,-!p3@Nfib!0.41!37.18!Nfib;;chr19:10315179..10315241,-!p1@Gm98!0.41!23.60!Gm98;;chr18:55152206..55152251,-!p1@Zfp608!0.41!22.21!Zfp608;;chr4:120624269..120624302,-!p1@Zfp69!0.41!7.71!Zfp69;;chr18:55152179..55152194,-!p5@Zfp608!0.41!5.86!Zfp608;;chr9:96653072..96653154,-!p1@Zbtb38!0.41!5.55!Zbtb38;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.41!3.70!Zbtb38;;chr11:18918820..18918831,-!p4@Meis1!0.41!3.70!Meis1;;chr12:37835120..37835133,+!p2@Meox2!0.41!2.62!Meox2;;chr13:73397921..73397935,+!p3@Irx4!0.41!1.54!Irx4;;chr9:87625971..87625992,-!p2@Tbx18!0.41!1.54!Tbx18;;chr6:53018556..53018650,-!p1@Jazf1!0.40!14.81!Jazf1;;chrX:132420488..132420517,+!p4@Bhlhb9!0.40!9.10!Bhlhb9;;chr17:23004042..23004077,-!p2@Zfp945!0.40!8.02!Zfp945;;chr9:63869802..63869815,-!p3@Smad6!0.40!3.86!Smad6;;chr8:92872177..92872201,-!p2@Tox3!0.40!3.24!Tox3;;chr4:13712168..13712218,+!p4@Runx1t1!0.40!3.09!Runx1t1;;chr13:31898767..31898785,+!p4@Foxc1!0.40!2.01!Foxc1;;chr9:111020795..111020816,+!p3@Lrrfip2!0.40!1.70!Lrrfip2;;chr18:14131126..14131211,-!p1@Zfp521!0.39!46.28!Zfp521;;chrX:132420442..132420482,+!p2@Bhlhb9!0.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m5!0.22!6.63!Prdm5;;chrX:53599567..53599592,+!p1@Zfp449!0.22!5.55!Zfp449;;chr5:138186979..138187025,+!p4@Tsc22d4!0.22!4.78!Tsc22d4;;chrX:98449898..98449913,+!p2@Foxo4!0.22!4.01!Foxo4;;chr10:114821393..114821431,-!p5@Thap2!0.22!3.39!Thap2;;chr4:97444616..97444631,+!p7@Nfia!0.22!3.39!Nfia;;chr11:5761871..5761882,+!p3@Aebp1!0.22!3.09!Aebp1;;chr11:85646263..85646278,+!p2@Tbx2!0.22!3.09!Tbx2;;chr5:77524231..77524245,-!p3@Hopx!0.22!2.93!Hopx;;chr4:118846454..118846506,-!p2@Zfp691!0.22!2.62!Zfp691;;chr2:34227446..34227511,-!p1@Pbx3!0.22!2.62!Pbx3;;chr11:98602203..98602266,+!p4@Thra!0.22!1.54!Thra;;chr2:115891680..115891701,-!p12@Meis2!0.22!1.08!Meis2;;chrX:137077699..137077705,-!p8@Tsc22d3!0.22!1.08!Tsc22d3;;chr8:79423672..79423727,+!p2@Nr3c2!0.22!1.08!Nr3c2;;chr3:19957878..19957885,+!p2@Hltf!0.22!1.08!Hltf;;chr6:145813964..145813994,-!p3@Bhlhe41!0.22!1.08!Bhlhe41;;chr5:20387890..20387893,-!p3@Phtf2!0.22!1.08!Phtf2;;chr7:123177377..123177409,-!p7@Sox6!0.22!1.08!Sox6;;chr4:154011072..154011095,-!p6@Prdm16!0.22!0.93!Prdm16;;chr8:90328310..90328362,-!p3@Zfp423!0.22!0.93!Zfp423;;chr16:43510301..43510313,+!p24@Zbtb20!0.22!0.93!Zbtb20;;chr18:53623836..53623839,+!p1@Prdm6!0.22!0.93!Prdm6;;chrX:137077134..137077143,-!p10@Tsc22d3!0.22!0.77!Tsc22d3;;chr12:75008961..75009002,+!p1@Hif1a!0.21!89.01!Hif1a;;chr11:72990702..72990737,+!p1@LOC100047518,p1@Tax1bp3!0.21!13.42!Tax1bp3;;chr19:26822880..26822964,+!p2@Smarca2!0.21!11.88!Smarca2;;chr8:72662966..72662991,-!p3@LOC100048268,p3@Rfxank!0.21!4.47!Rfxank;;chr15:75447162..75447217,+!p2@Zfp41!0.21!3.55!Zfp41;;chr1:162836606..162836631,+!p2@Rc3h1!0.21!3.24!Rc3h1;;chr13:15555670..15555771,+!p2@Gli3!0.21!2.93!Gli3;;chr1:170361826..170361844,-!p9@Pbx1!0.21!2.47!Pbx1;;chr7:74517732..74517743,-!p4@Mef2a!0.21!2.01!Mef2a;;chr6:128312772..128312792,+!p2@Foxm1!0.21!1.70!Foxm1;;chr2:91864449..91864492,-!p3@Creb3l1!0.21!1.54!Creb3l1;;chr1:165243379..165243402,-!p3@Prrx1!0.21!1.39!Prrx1;;chr12:9581317..9581333,+!p3@Osr1!0.21!1.39!Osr1;;chr14:17407549..17407575,-!p3@Rarb!0.21!1.39!Rarb;;chr13:64254572..64254585,-!p6@Zfp367!0.21!1.23!Zfp367;;chr1:14746065..14746079,-!p1@Msc!0.21!0.93!Msc;;chr16:43503594..43503634,+!p15@Zbtb20!0.21!0.93!Zbtb20;;chr4:13670441..13670463,+!p8@Runx1t1!0.21!0.93!Runx1t1;;chr4:154010334..154010347,-!p8@Prdm16!0.21!0.93!Prdm16;;chr7:123182248..123182264,-!p3@Sox6!0.21!0.93!Sox6;;chr6:14851377..14851396,+!p10@Foxp2!0.21!0.62!Foxp2;;chr7:108966820..108966835,+!p1@Phox2a!0.21!0.62!Phox2a;;chr19:55967419..55967424,+!p19@Tcf7l2!0.21!0.62!Tcf7l2;;chr16:43364012..43364030,+!p22@Zbtb20!0.21!0.62!Zbtb20;;chr18:14130594..14130600,-!p7@Zfp521!0.21!0.62!Zfp521;;chr12:77278238..77278252,-!p1@Esr2!0.21!0.62!Esr2;;chr13:53568191..53568219,-!p2@Msx2!0.21!0.62!Msx2;;chr12:37835219..37835230,+!p5@Meox2!0.21!0.62!Meox2;;chr1:92950128..92950139,+!p4@Lrrfip1!0.21!0.62!Lrrfip1;;chr2:30701003..30701028,+!p6@Prrx2!0.21!0.62!Prrx2;;chr3:29911947..29911958,-!p14@Mecom!0.21!0.62!Mecom;;chr4:154010313..154010324,-!p9@Prdm16!0.21!0.62!Prdm16;;chr4:150503544..150503561,-!p8@Camta1!0.21!0.62!Camta1;;chr11:90250999..90251013,-!p8@Hlf!0.21!0.62!Hlf;;chr11:57645586..57645597,-!p2@Hand1!0.21!0.62!Hand1;;chr10:30375665..30375674,-!p11@Ncoa7!0.21!0.62!Ncoa7;;chr7:52960888..52960902,+!p7@Dbp!0.21!0.62!Dbp;;chr13:23461025..23461086,-!p1@Zfp322a!0.20!33.48!Zfp322a;;chr13:53076396..53076452,-!p1@Nfil3!0.20!25.30!Nfil3;;chr9:19426523..19426584,+!p1@Zfp317!0.20!20.67!Zfp317;;chr9:71743854..71743909,-!p1@Tcf12!0.20!10.80!Tcf12;;chr10:126726055..126726091,-!p2@Mbd6!0.20!10.80!Mbd6;;chr10:79862134..79862173,-!p3@Mbd3!0.20!10.64!Mbd3;;chr4:49534086..49534168,+!p1@Zfp189!0.20!9.87!Zfp189;;chr9:96159665..96159680,+!p3@Tfdp2!0.20!5.86!Tfdp2;;chr6:97757008..97757061,+!p1@Mitf!0.20!5.40!Mitf;;chr18:5334362..5334408,-!p1@Zfp438!0.20!5.40!Zfp438;;chr15:79177964..79177986,+!p1@Maff!0.20!4.17!Maff;;chr13:67830046..67830082,-!p2@Zfp71-rs1!0.20!3.39!Zfp71-rs1;;chr7:4990015..4990028,-!p2@Zfp784!0.20!3.24!Zfp784;;chr12:3807001..3807016,+!p5@Dnmt3a!0.20!2.78!Dnmt3a;;chr10:119913546..119913583,-!p3@Hmga2!0.20!2.16!Hmga2;;chr13:96095097..96095114,+!p5@Zbed3!0.20!1.70!Zbed3;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.20!1.54!Hmga1;;chr4:122911056..122911065,+!p2@Heyl!0.20!1.39!Heyl;;chr3:54559550..54559570,+!p4@Smad9!0.20!1.23!Smad9;;chr17:46692970..46692977,-!p5@Srf!0.20!1.08!Srf;;chr8:123640090..123640101,+!p2@Foxc2!0.20!0.77!Foxc2;;chr3:29912058..29912071,-!p6@Mecom!0.20!0.77!Mecom;;chr3:29912079..29912096,-!p10@Mecom!0.20!0.77!Mecom;;chr9:32503590..32503680,+!p1@Ets1!0.19!50.91!Ets1;;chr17:87153240..87153254,+!p1@Epas1!0.19!27.15!Epas1;;chr10:110182489..110182589,+!p1@E2f7!0.19!16.04!E2f7;;chr8:109620410..109620462,-!p1@Terf2!0.19!12.65!Terf2;;chr4:97439116..97439202,+!p5@Nfia!0.19!11.72!Nfia;;chr10:119913310..119913366,-!p1@Hmga2!0.19!10.18!Hmga2;;chr4:94718861..94718872,-!p2@Jun!0.19!9.87!Jun;;chr7:11080671..11080750,-!p1@Zik1!0.19!9.10!Zik1;;chr7:30906934..30907020,+!p1@Zfp382!0.19!8.64!Zfp382;;chr6:133985657..1339857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Hmgxb3!0.12!0.62!Hmgxb3;;chr14:52936008..52936019,-!p5@Sall2!0.12!0.62!Sall2;;chr4:87678639..87678653,-!p11@Mllt3!0.12!0.62!Mllt3;;chr3:95032184..95032195,-!p4@Mllt11!0.12!0.62!Mllt11;;chr3:100773602..100773607,-!p2@Ttf2!0.12!0.62!Ttf2;;chr10:88996336..88996380,-!p2@Nr1h4!0.12!0.62!Nr1h4;;chr5:138187466..138187477,+!p11@Tsc22d4!0.12!0.62!Tsc22d4;;chr6:15135639..15135655,+!p9@Foxp2!0.12!0.62!Foxp2;;chr6:14851403..14851422,+!p8@Foxp2!0.12!0.31!Foxp2;;chr6:144157991..144158007,-!p9@Sox5!0.12!0.31!Sox5;;chr6:144158153..144158167,-!p19@Sox5!0.12!0.31!Sox5;;chr5:46247735..46247746,-!p13@Lcorl!0.12!0.31!Lcorl;;chr6:52108291..52108323,-!p1@Hoxa1!0.12!0.31!Hoxa1;;chr6:144157968..144157989,-!p7@Sox5!0.12!0.31!Sox5;;chr7:119885584..119885594,+!p8@Tead1!0.12!0.31!Tead1;;chr6:128250448..128250453,-!p8@Tead4!0.12!0.31!Tead4;;chr7:122989632..122989668,-!p2@Sox6!0.12!0.31!Sox6;;chr7:122989594..122989626,-!p1@Sox6!0.12!0.31!Sox6;;chr7:144505876..144505884,-!p9@Ebf3!0.12!0.31!Ebf3;;chr3:29912271..29912291,-!p16@Mecom!0.12!0.31!Mecom;;chr3:130813756..130813767,+!p8@Lef1!0.12!0.31!Lef1;;chr4:153708892..153708904,-!p13@Prdm16!0.12!0.31!Prdm16;;chr4:135736707..135736724,+!p8@E2f2!0.12!0.31!E2f2;;chr4:119487109..119487131,+!p4@Hivep3!0.12!0.31!Hivep3;;chr2:74543397..74543435,+!p2@Hoxd8!0.12!0.31!Hoxd8;;chr4:82351566..82351607,-!p10@Nfib!0.12!0.31!Nfib;;chr2:74536026..74536039,+!p1@Hoxd9!0.12!0.31!Hoxd9;;chr4:97444086..97444093,+!p24@Nfia!0.12!0.31!Nfia;;chr2:74543202..74543213,+!p3@Hoxd8!0.12!0.31!Hoxd8;;chr4:114730288..114730306,+!p8@Tal1!0.12!0.31!Tal1;;chr18:3281015..3281028,-!p18@Crem!0.12!0.31!Crem;;chr17:51951662..51951670,-!p21@Satb1!0.12!0.31!Satb1;;chr16:25801993..25802014,+!p1@Trp63!0.12!0.31!Trp63;;chr16:43364258..43364270,+!p27@Zbtb20!0.12!0.31!Zbtb20;;chr18:84581781..84581790,-!p8@Zfp407!0.12!0.31!Zfp407;;chr17:37139555..37139562,+!p6@Zfp57!0.12!0.31!Zfp57;;chr8:94881686..94881700,+!p4@Irx5!0.12!0.31!Irx5;;chr8:90328289..90328301,-!p4@Zfp423!0.12!0.31!Zfp423;;chr8:87238155..87238187,-!p13@Nfix!0.12!0.31!Nfix;;chr9:55388997..55389016,+!p1@Isl2!0.12!0.31!Isl2;;chr8:94881639..94881650,+!p5@Irx5!0.12!0.31!Irx5;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.12!0.31!Foxl1;;chr14:67853682..67853702,+!p4@Ebf2!0.12!0.31!Ebf2;;chr13:78339241..78339273,-!p9@Nr2f1!0.12!0.31!Nr2f1;;chr14:67853568..67853573,+!p5@Ebf2!0.12!0.31!Ebf2;;chr13:72766234..72766243,+!p3@Irx2!0.12!0.31!Irx2;;chr13:78339096..78339116,-!p12@Nr2f1!0.12!0.31!Nr2f1;;chr14:70477113..70477173,+!p1@Egr3!0.12!0.31!Egr3;;chr12:85560016..85560038,-!p6@C130039O16Rik!0.12!0.31!C130039O16Rik;;chr14:17407671..17407684,-!p7@Rarb!0.12!0.31!Rarb;;chr13:83663500..83663519,+!p8@Mef2c!0.12!0.31!Mef2c;;chr15:25914088..25914091,+!p6@Zfp622!0.12!0.31!Zfp622;;chr10:19076364..19076371,+!p1@Olig3!0.12!0.31!Olig3;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.12!0.31!Hoxb2;;chr11:97524329..97524348,+!p6@Mllt6!0.12!0.31!Mllt6;;chr11:44431430..44431437,+!p17@Ebf1!0.12!0.31!Ebf1;;chr11:96180069..96180089,+!p3@Hoxb4!0.12!0.31!Hoxb4;;chr11:21901608..21901634,-!p1@Otx1!0.12!0.31!Otx1;;chr11:100721492..100721499,+!p5@Stat5a!0.12!0.31!Stat5a;;chr11:85699862..85699920,+!p1@Tbx4!0.12!0.31!Tbx4;;chr12:105711446..105711464,-!p1@Gsc!0.12!0.31!Gsc;;chr11:44431115..44431132,+!p9@Ebf1!0.12!0.31!Ebf1;;chr10:75384163..75384185,-!p3@Smarcb1!0.12!0.31!Smarcb1;;chr2:147190725..147190747,+!p2@Pax1!0.12!0.31!Pax1;;chr2:115890864..115890869,-!p14@Meis2!0.12!0.31!Meis2;;chr1:92949751..92949769,+!p5@Lrrfip1!0.12!0.31!Lrrfip1;;chr19:55969923..55969944,+!p6@Tcf7l2!0.12!0.31!Tcf7l2;;chr2:104966983..104966990,+!p11@Wt1!0.12!0.31!Wt1;;chr1:189432857..189432870,+!p7@Esrrg!0.12!0.31!Esrrg;;chr2:104966909..104966920,+!p8@Wt1!0.12!0.31!Wt1;; | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:457-17C6 | |||
|is_a=EFO:0002091;;FF:0011356 | |||
|is_obsolete= | |||
|library_id=CNhs11021 | |||
|library_id_phase_based=2:CNhs11021 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;457 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;457 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E16.CNhs11021.457-17C6.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E16.CNhs11021.457-17C6.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E16.CNhs11021.457-17C6.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E16.CNhs11021.457-17C6.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E16.CNhs11021.457-17C6.mm9.nobarcode.rdna.fa.gz | |||
|name=heart, embryo E16 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11021,LSID731,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=0.056759294772502,0,0,0,0,0.0311531610083686,1.42119226140459,0,0,0,0,1.17390641494011,0,0,0,0,0,0,0.367119948942525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179861870229231,0,0,0,0.0623063220167371,0.00935011948921272,0.0759150449619827,0.00757721710648473,0.0976471908178473,0.420181057843756,0.30725627300895,0,0,0,0,0,0,0,0,0,0,0.248300842374931,0,0.411907206284369,0,0,0,0,0,0,0.0583925432245655,0.0623063220167371,0.0623063220167371,0.0386109461203189,0.160201223224619,0.0674571354162389,0.24719914903984,0.128592640107841,0,0.165185349104694,0,-0.0481097483815471,0.208728404260772,0,0.0245044044042314,-0.173291008513529,-0.165043879252244,0.0379534916092237,0,0,0,0,0,0,0,0.19296349436112,-0.0231554595495925,0.040177691019991,0,0,0,0.0623063220167371 | |||
|rna_box=17 | |||
|rna_catalog_number= | |||
|rna_concentration= | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=C6 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=17C6 | |||
|rna_weight_ug= | |||
|sample_age= | |||
|sample_category=developmental | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=16 days embryo | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=457 | |||
|sample_note= | |||
|sample_sex=mixture | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=C57BL/6J | |||
|sample_tissue=heart | |||
|top_motifs=EVI1:3.20172393183;HOX{A5,B5}:3.1215486091;GATA4:3.02488413103;MEF2{A,B,C,D}:2.82894942526;NR5A1,2:2.70207635756;IKZF2:2.28022595339;SRF:2.22893821814;ALX1:2.12901026903;NKX2-1,4:2.12418413271;NR3C1:2.06243711249;HMGA1,2:2.0215422789;FOXL1:1.81904801711;UFEwm:1.64783649801;TEAD1:1.58350015504;RXR{A,B,G}:1.55052415121;PAX4:1.48804318964;HIF1A:1.47101548263;NKX2-2,8:1.44046220205;POU3F1..4:1.43834260035;T:1.39209472899;NFE2L1:1.37265967753;PRDM1:1.36575132184;SOX5:1.26617633503;NKX3-1:1.19996375217;NR6A1:1.14544591397;FOXP1:1.10241145255;PITX1..3:1.07122811766;TEF:1.05037023298;KLF4:1.04849218165;TGIF1:0.889393173914;GATA6:0.872634504779;NANOG{mouse}:0.860400713112;TOPORS:0.844491101058;CDX1,2,4:0.826681170153;GFI1:0.816885488776;MYBL2:0.786113458342;IKZF1:0.770375997511;HBP1_HMGB_SSRP1_UBTF:0.768222825811;NFATC1..3:0.755428074802;CDC5L:0.749823190209;ZNF384:0.694657911877;AR:0.670127370998;ARID5B:0.664365354908;SOX{8,9,10}:0.648890234399;POU1F1:0.605405258941;TLX1..3_NFIC{dimer}:0.597023046393;ZBTB16:0.550890011333;ESRRA:0.550292357208;E2F1..5:0.54507339371;GFI1B:0.534636902378;NKX6-1,2:0.521550557472;BPTF:0.516184810853;EP300:0.49228461278;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.477202926951;ZNF143:0.463138013862;GCM1,2:0.460830437899;MZF1:0.445702513922;CUX2:0.43467702197;FOX{I1,J2}:0.415146961925;RREB1:0.400349697954;FOXD3:0.356052675925;PATZ1:0.260667548303;DBP:0.243648751155;MAFB:0.22880422217;MAZ:0.185613071533;TFAP4:0.17498187584;EN1,2:0.16728891343;SPIB:0.149114474835;ZNF238:0.145862743981;SOX17:0.133903894743;BREu{core}:0.128097371844;PAX2:0.100536994563;GTF2A1,2:0.0929395816334;NFY{A,B,C}:0.08602162641;NRF1:0.0772313482831;GLI1..3:0.0725709347381;HAND1,2:0.056917118461;EBF1:0.0498493822858;FOXO1,3,4:0.0491673121598;AIRE:0.0461154343126;CRX:0.0384834561951;IRF7:0.0183279888138;ZFP161:0.00601469433907;FOXP3:0.000188654539455;XCPE1{core}:6.10892341366e-05;PAX5:-0.0335732005504;TFCP2:-0.0616672280697;GTF2I:-0.064002513675;SP1:-0.0811953426859;SMAD1..7,9:-0.106807055419;SOX2:-0.10684225879;ZIC1..3:-0.109793103604;FOSL2:-0.138034093086;NKX3-2:-0.156464576607;TBP:-0.164594746902;ELF1,2,4:-0.180963853575;NKX2-3_NKX2-5:-0.187974581022;RBPJ:-0.189866504101;CREB1:-0.21852863513;MYB:-0.219252980282;PDX1:-0.220244455517;ATF2:-0.222676867209;POU6F1:-0.225075749992;MTE{core}:-0.226117124788;VSX1,2:-0.23008206547;TLX2:-0.235739084688;HIC1:-0.236558596281;TFAP2B:-0.238855085678;EGR1..3:-0.2760615718;YY1:-0.287891316277;STAT1,3:-0.289653519159;HOX{A4,D4}:-0.290922956727;NFE2L2:-0.333964673581;SPI1:-0.334278054903;RFX2..5_RFXANK_RFXAP:-0.348234284631;HOXA9_MEIS1:-0.367204889029;MTF1:-0.369929981567;NANOG:-0.370769574817;ATF4:-0.379587098791;ELK1,4_GABP{A,B1}:-0.405513012448;HES1:-0.412981631102;RXRA_VDR{dimer}:-0.414048951409;ETS1,2:-0.424401252947;RORA:-0.426098866336;IRF1,2:-0.429767925145;RFX1:-0.45331290455;NHLH1,2:-0.472825214896;HSF1,2:-0.487975333395;PAX1,9:-0.494045345384;TFDP1:-0.494852627211;ESR1:-0.511578995115;TBX4,5:-0.515293612991;ZNF148:-0.517299295914;ZNF423:-0.530038676547;SREBF1,2:-0.530883207216;TP53:-0.539487327222;ALX4:-0.54124461742;PAX8:-0.542293323259;GZF1:-0.545083641988;FOX{D1,D2}:-0.58094649387;OCT4_SOX2{dimer}:-0.589630297275;NR1H4:-0.592156106392;MED-1{core}:-0.601977926126;JUN:-0.603307726451;TFAP2{A,C}:-0.660070555025;NFIL3:-0.668246274708;FOXA2:-0.672289232489;AHR_ARNT_ARNT2:-0.679158860896;ZBTB6:-0.690369353287;HNF1A:-0.690376881209;MYFfamily:-0.701085266136;POU5F1:-0.701201160477;HNF4A_NR2F1,2:-0.706190605929;LHX3,4:-0.73000334078;REST:-0.741546730688;NFKB1_REL_RELA:-0.74420973223;DMAP1_NCOR{1,2}_SMARC:-0.763978114765;ONECUT1,2:-0.789689388958;TAL1_TCF{3,4,12}:-0.806597775491;RUNX1..3:-0.807445135328;BACH2:-0.820486046153;PAX6:-0.921562076235;FOXN1:-0.951285122842;ATF5_CREB3:-0.958420713939;CEBPA,B_DDIT3:-0.967224126095;FOX{F1,F2,J1}:-1.0015904824;HLF:-1.00361025473;NFE2:-1.01374594727;FOS_FOS{B,L1}_JUN{B,D}:-1.04174182145;NFIX:-1.06416837754;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06816865284;SNAI1..3:-1.07890063614;LMO2:-1.0873581266;ATF6:-1.10774931464;ZEB1:-1.10965045913;POU2F1..3:-1.16412354052;bHLH_family:-1.27625048806;ADNP_IRX_SIX_ZHX:-1.31521702864;PRRX1,2:-1.34264676987;MYOD1:-1.37223002007;LEF1_TCF7_TCF7L1,2:-1.44357997127;PBX1:-1.51686115603;HMX1:-1.52579149083;STAT5{A,B}:-1.53885124496;FOXQ1:-1.56158107035;STAT2,4,6:-1.57228282431;PPARG:-1.59266419474;FOXM1:-1.66347155237;SPZ1:-1.78956789572 | |top_motifs=EVI1:3.20172393183;HOX{A5,B5}:3.1215486091;GATA4:3.02488413103;MEF2{A,B,C,D}:2.82894942526;NR5A1,2:2.70207635756;IKZF2:2.28022595339;SRF:2.22893821814;ALX1:2.12901026903;NKX2-1,4:2.12418413271;NR3C1:2.06243711249;HMGA1,2:2.0215422789;FOXL1:1.81904801711;UFEwm:1.64783649801;TEAD1:1.58350015504;RXR{A,B,G}:1.55052415121;PAX4:1.48804318964;HIF1A:1.47101548263;NKX2-2,8:1.44046220205;POU3F1..4:1.43834260035;T:1.39209472899;NFE2L1:1.37265967753;PRDM1:1.36575132184;SOX5:1.26617633503;NKX3-1:1.19996375217;NR6A1:1.14544591397;FOXP1:1.10241145255;PITX1..3:1.07122811766;TEF:1.05037023298;KLF4:1.04849218165;TGIF1:0.889393173914;GATA6:0.872634504779;NANOG{mouse}:0.860400713112;TOPORS:0.844491101058;CDX1,2,4:0.826681170153;GFI1:0.816885488776;MYBL2:0.786113458342;IKZF1:0.770375997511;HBP1_HMGB_SSRP1_UBTF:0.768222825811;NFATC1..3:0.755428074802;CDC5L:0.749823190209;ZNF384:0.694657911877;AR:0.670127370998;ARID5B:0.664365354908;SOX{8,9,10}:0.648890234399;POU1F1:0.605405258941;TLX1..3_NFIC{dimer}:0.597023046393;ZBTB16:0.550890011333;ESRRA:0.550292357208;E2F1..5:0.54507339371;GFI1B:0.534636902378;NKX6-1,2:0.521550557472;BPTF:0.516184810853;EP300:0.49228461278;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.477202926951;ZNF143:0.463138013862;GCM1,2:0.460830437899;MZF1:0.445702513922;CUX2:0.43467702197;FOX{I1,J2}:0.415146961925;RREB1:0.400349697954;FOXD3:0.356052675925;PATZ1:0.260667548303;DBP:0.243648751155;MAFB:0.22880422217;MAZ:0.185613071533;TFAP4:0.17498187584;EN1,2:0.16728891343;SPIB:0.149114474835;ZNF238:0.145862743981;SOX17:0.133903894743;BREu{core}:0.128097371844;PAX2:0.100536994563;GTF2A1,2:0.0929395816334;NFY{A,B,C}:0.08602162641;NRF1:0.0772313482831;GLI1..3:0.0725709347381;HAND1,2:0.056917118461;EBF1:0.0498493822858;FOXO1,3,4:0.0491673121598;AIRE:0.0461154343126;CRX:0.0384834561951;IRF7:0.0183279888138;ZFP161:0.00601469433907;FOXP3:0.000188654539455;XCPE1{core}:6.10892341366e-05;PAX5:-0.0335732005504;TFCP2:-0.0616672280697;GTF2I:-0.064002513675;SP1:-0.0811953426859;SMAD1..7,9:-0.106807055419;SOX2:-0.10684225879;ZIC1..3:-0.109793103604;FOSL2:-0.138034093086;NKX3-2:-0.156464576607;TBP:-0.164594746902;ELF1,2,4:-0.180963853575;NKX2-3_NKX2-5:-0.187974581022;RBPJ:-0.189866504101;CREB1:-0.21852863513;MYB:-0.219252980282;PDX1:-0.220244455517;ATF2:-0.222676867209;POU6F1:-0.225075749992;MTE{core}:-0.226117124788;VSX1,2:-0.23008206547;TLX2:-0.235739084688;HIC1:-0.236558596281;TFAP2B:-0.238855085678;EGR1..3:-0.2760615718;YY1:-0.287891316277;STAT1,3:-0.289653519159;HOX{A4,D4}:-0.290922956727;NFE2L2:-0.333964673581;SPI1:-0.334278054903;RFX2..5_RFXANK_RFXAP:-0.348234284631;HOXA9_MEIS1:-0.367204889029;MTF1:-0.369929981567;NANOG:-0.370769574817;ATF4:-0.379587098791;ELK1,4_GABP{A,B1}:-0.405513012448;HES1:-0.412981631102;RXRA_VDR{dimer}:-0.414048951409;ETS1,2:-0.424401252947;RORA:-0.426098866336;IRF1,2:-0.429767925145;RFX1:-0.45331290455;NHLH1,2:-0.472825214896;HSF1,2:-0.487975333395;PAX1,9:-0.494045345384;TFDP1:-0.494852627211;ESR1:-0.511578995115;TBX4,5:-0.515293612991;ZNF148:-0.517299295914;ZNF423:-0.530038676547;SREBF1,2:-0.530883207216;TP53:-0.539487327222;ALX4:-0.54124461742;PAX8:-0.542293323259;GZF1:-0.545083641988;FOX{D1,D2}:-0.58094649387;OCT4_SOX2{dimer}:-0.589630297275;NR1H4:-0.592156106392;MED-1{core}:-0.601977926126;JUN:-0.603307726451;TFAP2{A,C}:-0.660070555025;NFIL3:-0.668246274708;FOXA2:-0.672289232489;AHR_ARNT_ARNT2:-0.679158860896;ZBTB6:-0.690369353287;HNF1A:-0.690376881209;MYFfamily:-0.701085266136;POU5F1:-0.701201160477;HNF4A_NR2F1,2:-0.706190605929;LHX3,4:-0.73000334078;REST:-0.741546730688;NFKB1_REL_RELA:-0.74420973223;DMAP1_NCOR{1,2}_SMARC:-0.763978114765;ONECUT1,2:-0.789689388958;TAL1_TCF{3,4,12}:-0.806597775491;RUNX1..3:-0.807445135328;BACH2:-0.820486046153;PAX6:-0.921562076235;FOXN1:-0.951285122842;ATF5_CREB3:-0.958420713939;CEBPA,B_DDIT3:-0.967224126095;FOX{F1,F2,J1}:-1.0015904824;HLF:-1.00361025473;NFE2:-1.01374594727;FOS_FOS{B,L1}_JUN{B,D}:-1.04174182145;NFIX:-1.06416837754;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06816865284;SNAI1..3:-1.07890063614;LMO2:-1.0873581266;ATF6:-1.10774931464;ZEB1:-1.10965045913;POU2F1..3:-1.16412354052;bHLH_family:-1.27625048806;ADNP_IRX_SIX_ZHX:-1.31521702864;PRRX1,2:-1.34264676987;MYOD1:-1.37223002007;LEF1_TCF7_TCF7L1,2:-1.44357997127;PBX1:-1.51686115603;HMX1:-1.52579149083;STAT5{A,B}:-1.53885124496;FOXQ1:-1.56158107035;STAT2,4,6:-1.57228282431;PPARG:-1.59266419474;FOXM1:-1.66347155237;SPZ1:-1.78956789572 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:457-17C6;search_select_hide=table117:457-17C6 | |||
}} | }} |
Latest revision as of 19:16, 4 June 2020
Name: | heart, embryo E16 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11021 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11021
0 | 0 |
1 | 0 |
10 | 0.248 |
100 | 0 |
1000 | 0.304 |
1001 | 0.297 |
1002 | 0.412 |
1003 | 0.0211 |
1004 | 0 |
1005 | -0.151 |
1006 | 0.279 |
1007 | 0.0272 |
1008 | 0 |
1009 | 0.104 |
101 | -0.0179 |
1010 | 0 |
1011 | -0.0231 |
1012 | 0.117 |
1013 | -0.207 |
1014 | 0.563 |
1015 | 0.0448 |
1016 | 0.109 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.455 |
1023 | 0 |
1024 | 0.158 |
1025 | 0.048 |
1026 | 0 |
1027 | 0 |
1028 | 0.0623 |
1029 | 0.186 |
103 | 0.201 |
1030 | 0 |
1031 | 0.255 |
1032 | 0.0264 |
1033 | -0.00419 |
1034 | 0 |
1035 | 0.611 |
1036 | -0.0614 |
1037 | 0 |
1038 | 0.0704 |
1039 | 0.172 |
104 | 0 |
1040 | 0.102 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11021
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11021
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.515 |
10 | 10 | 0.615 |
100 | 100 | 0.839 |
101 | 101 | 0.914 |
102 | 102 | 0.695 |
103 | 103 | 0.835 |
104 | 104 | 0.988 |
105 | 105 | 0.677 |
106 | 106 | 0.793 |
107 | 107 | 0.692 |
108 | 108 | 0.964 |
109 | 109 | 0.501 |
11 | 11 | 0.704 |
110 | 110 | 0.0544 |
111 | 111 | 0.476 |
112 | 112 | 0.361 |
113 | 113 | 0.416 |
114 | 114 | 0.958 |
115 | 115 | 0.963 |
116 | 116 | 0.521 |
117 | 117 | 0.326 |
118 | 118 | 0.389 |
119 | 119 | 0.639 |
12 | 12 | 0.514 |
120 | 120 | 0.247 |
121 | 121 | 0.449 |
122 | 122 | 0.133 |
123 | 123 | 0.09 |
124 | 124 | 0.728 |
125 | 125 | 0.748 |
126 | 126 | 0.905 |
127 | 127 | 0.201 |
128 | 128 | 0.309 |
129 | 129 | 0.879 |
13 | 13 | 1.60022e-4 |
130 | 130 | 0.288 |
131 | 131 | 0.357 |
132 | 132 | 0.834 |
133 | 133 | 0.244 |
134 | 134 | 0.661 |
135 | 135 | 0.792 |
136 | 136 | 0.0247 |
137 | 137 | 0.576 |
138 | 138 | 0.14 |
139 | 139 | 0.88 |
14 | 14 | 0.89 |
140 | 140 | 0.337 |
141 | 141 | 0.732 |
142 | 142 | 0.698 |
143 | 143 | 0.559 |
144 | 144 | 0.0774 |
145 | 145 | 0.135 |
146 | 146 | 0.383 |
147 | 147 | 0.748 |
148 | 148 | 0.858 |
149 | 149 | 0.506 |
15 | 15 | 0.352 |
150 | 150 | 0.178 |
151 | 151 | 0.185 |
152 | 152 | 0.491 |
153 | 153 | 0.89 |
154 | 154 | 0.831 |
155 | 155 | 0.343 |
156 | 156 | 0.00799 |
157 | 157 | 0.705 |
158 | 158 | 0.498 |
159 | 159 | 0.0329 |
160 | 160 | 0.0725 |
161 | 161 | 0.561 |
162 | 162 | 0.603 |
163 | 163 | 0.804 |
164 | 164 | 0.598 |
165 | 165 | 0.163 |
166 | 166 | 0.454 |
167 | 167 | 0.925 |
168 | 168 | 0.49 |
169 | 169 | 0.00661 |
17 | 17 | 0.928 |
18 | 18 | 0.201 |
19 | 19 | 0.157 |
2 | 2 | 0.281 |
20 | 20 | 0.177 |
21 | 21 | 0.954 |
22 | 22 | 0.347 |
23 | 23 | 0.214 |
24 | 24 | 0.41 |
25 | 25 | 0.553 |
26 | 26 | 0.00838 |
27 | 27 | 0.21 |
28 | 28 | 0.22 |
29 | 29 | 0.482 |
3 | 3 | 0.683 |
30 | 30 | 0.0291 |
31 | 31 | 0.779 |
32 | 32 | 0.708 |
33 | 33 | 0.141 |
34 | 34 | 0.937 |
35 | 35 | 0.558 |
36 | 36 | 0.124 |
37 | 37 | 0.108 |
38 | 38 | 0.407 |
39 | 39 | 0.941 |
4 | 4 | 0.452 |
40 | 40 | 0.00322 |
41 | 41 | 0.789 |
42 | 42 | 0.779 |
43 | 43 | 0.57 |
44 | 44 | 0.788 |
45 | 45 | 0.038 |
46 | 46 | 0.744 |
47 | 47 | 0.986 |
48 | 48 | 0.954 |
49 | 49 | 0.379 |
5 | 5 | 0.47 |
50 | 50 | 0.31 |
51 | 51 | 0.85 |
52 | 52 | 0.922 |
53 | 53 | 0.446 |
54 | 54 | 0.665 |
55 | 55 | 0.152 |
56 | 56 | 0.882 |
57 | 57 | 0.186 |
58 | 58 | 0.653 |
59 | 59 | 0.232 |
6 | 6 | 0.137 |
60 | 60 | 0.96 |
61 | 61 | 0.629 |
62 | 62 | 0.497 |
63 | 63 | 0.539 |
64 | 64 | 0.731 |
65 | 65 | 0.344 |
66 | 66 | 0.434 |
67 | 67 | 0.625 |
68 | 68 | 0.455 |
69 | 69 | 0.47 |
7 | 7 | 0.232 |
70 | 70 | 0.101 |
71 | 71 | 0.0083 |
72 | 72 | 0.0883 |
73 | 73 | 0.644 |
74 | 74 | 0.395 |
75 | 75 | 0.796 |
76 | 76 | 0.501 |
77 | 77 | 0.728 |
78 | 78 | 0.379 |
79 | 79 | 0.591 |
8 | 8 | 0.699 |
80 | 80 | 0.0186 |
81 | 81 | 0.726 |
82 | 82 | 0.792 |
83 | 83 | 0.848 |
84 | 84 | 0.835 |
85 | 85 | 0.631 |
86 | 86 | 0.69 |
87 | 87 | 4.92412e-6 |
88 | 88 | 0.377 |
89 | 89 | 0.344 |
9 | 9 | 0.615 |
90 | 90 | 0.647 |
91 | 91 | 0.0974 |
92 | 92 | 0.883 |
93 | 93 | 0.331 |
94 | 94 | 0.152 |
95 | 95 | 0.658 |
96 | 96 | 0.352 |
97 | 97 | 0.161 |
98 | 98 | 0.549 |
99 | 99 | 0.712 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11021
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000299 (mouse embryonic day 16 sample)
0011356 (mouse heart- embryo E16 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)