FF:10487-107B1: Difference between revisions
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Revision as of 15:13, 7 March 2012
Name: | giant cell carcinoma cell line:LU65 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11274
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11274
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0155 |
10 | 10 | 0.0319 |
100 | 100 | 0.0232 |
101 | 101 | 0.919 |
102 | 102 | 0.515 |
103 | 103 | 0.447 |
104 | 104 | 0.64 |
105 | 105 | 0.958 |
106 | 106 | 0.297 |
107 | 107 | 0.221 |
108 | 108 | 0.478 |
109 | 109 | 0.0143 |
11 | 11 | 0.357 |
110 | 110 | 0.115 |
111 | 111 | 0.0251 |
112 | 112 | 0.488 |
113 | 113 | 0.144 |
114 | 114 | 0.0251 |
115 | 115 | 0.991 |
116 | 116 | 0.486 |
117 | 117 | 0.0371 |
118 | 118 | 0.169 |
119 | 119 | 0.339 |
12 | 12 | 0.932 |
120 | 120 | 0.0379 |
121 | 121 | 0.314 |
122 | 122 | 0.352 |
123 | 123 | 0.0349 |
124 | 124 | 0.56 |
125 | 125 | 0.88 |
126 | 126 | 0.694 |
127 | 127 | 0.744 |
128 | 128 | 0.0658 |
129 | 129 | 0.933 |
13 | 13 | 6.6495e-4 |
130 | 130 | 0.717 |
131 | 131 | 0.493 |
132 | 132 | 0.458 |
133 | 133 | 0.502 |
134 | 134 | 0.333 |
135 | 135 | 0.486 |
136 | 136 | 0.127 |
137 | 137 | 0.379 |
138 | 138 | 0.436 |
139 | 139 | 0.0131 |
14 | 14 | 0.946 |
140 | 140 | 0.133 |
141 | 141 | 0.136 |
142 | 142 | 0.639 |
143 | 143 | 0.899 |
144 | 144 | 0.717 |
145 | 145 | 0.475 |
146 | 146 | 0.843 |
147 | 147 | 0.365 |
148 | 148 | 0.00652 |
149 | 149 | 0.681 |
15 | 15 | 0.0765 |
150 | 150 | 0.967 |
151 | 151 | 0.688 |
152 | 152 | 0.0619 |
153 | 153 | 0.152 |
154 | 154 | 0.955 |
155 | 155 | 0.739 |
156 | 156 | 0.352 |
157 | 157 | 0.56 |
158 | 158 | 0.4 |
159 | 159 | 0.509 |
16 | 16 | 0.432 |
160 | 160 | 0.769 |
161 | 161 | 0.993 |
162 | 162 | 0.793 |
163 | 163 | 0.39 |
164 | 164 | 0.137 |
165 | 165 | 0.349 |
166 | 166 | 0.395 |
167 | 167 | 0.00588 |
168 | 168 | 0.786 |
169 | 169 | 0.277 |
17 | 17 | 0.771 |
18 | 18 | 0.368 |
19 | 19 | 0.95 |
2 | 2 | 0.237 |
20 | 20 | 0.0372 |
21 | 21 | 0.192 |
22 | 22 | 0.6 |
23 | 23 | 0.977 |
24 | 24 | 0.223 |
25 | 25 | 0.458 |
26 | 26 | 0.254 |
27 | 27 | 0.442 |
28 | 28 | 0.825 |
29 | 29 | 0.0619 |
3 | 3 | 0.097 |
30 | 30 | 0.14 |
31 | 31 | 0.579 |
32 | 32 | 0.345 |
33 | 33 | 0.0585 |
34 | 34 | 0.199 |
35 | 35 | 0.284 |
36 | 36 | 0.0109 |
37 | 37 | 0.308 |
38 | 38 | 0.638 |
39 | 39 | 0.558 |
4 | 4 | 0.962 |
40 | 40 | 0.0362 |
41 | 41 | 0.948 |
42 | 42 | 0.183 |
43 | 43 | 0.284 |
44 | 44 | 0.765 |
45 | 45 | 0.516 |
46 | 46 | 0.415 |
47 | 47 | 0.137 |
48 | 48 | 0.215 |
49 | 49 | 0.158 |
5 | 5 | 0.538 |
50 | 50 | 0.938 |
51 | 51 | 0.959 |
52 | 52 | 0.195 |
53 | 53 | 0.963 |
54 | 54 | 0.944 |
55 | 55 | 0.797 |
56 | 56 | 0.857 |
57 | 57 | 0.0652 |
58 | 58 | 0.264 |
59 | 59 | 0.946 |
6 | 6 | 0.549 |
60 | 60 | 0.819 |
61 | 61 | 0.316 |
62 | 62 | 0.255 |
63 | 63 | 0.182 |
64 | 64 | 0.367 |
65 | 65 | 0.865 |
66 | 66 | 0.166 |
67 | 67 | 0.522 |
68 | 68 | 0.0267 |
69 | 69 | 0.614 |
7 | 7 | 0.0603 |
70 | 70 | 0.0411 |
71 | 71 | 0.0184 |
72 | 72 | 0.558 |
73 | 73 | 0.695 |
74 | 74 | 0.648 |
75 | 75 | 0.0789 |
76 | 76 | 0.0709 |
77 | 77 | 0.915 |
78 | 78 | 0.00589 |
79 | 79 | 0.0787 |
8 | 8 | 0.262 |
80 | 80 | 0.185 |
81 | 81 | 0.6 |
82 | 82 | 0.712 |
83 | 83 | 0.517 |
84 | 84 | 0.377 |
85 | 85 | 0.447 |
86 | 86 | 0.756 |
87 | 87 | 0.636 |
88 | 88 | 0.799 |
89 | 89 | 0.589 |
9 | 9 | 0.289 |
90 | 90 | 0.393 |
91 | 91 | 0.261 |
92 | 92 | 0.656 |
93 | 93 | 0.487 |
94 | 94 | 0.487 |
95 | 95 | 0.23 |
96 | 96 | 0.355 |
97 | 97 | 0.995 |
98 | 98 | 0.0206 |
99 | 99 | 0.297 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11274
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
FF:0102411 giant cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
DOID: Disease
0050687 (cell type cancer)
14566 (disease of cellular proliferation)
162 (cancer)
305 (carcinoma)
4 (disease)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA