FFCP PHASE1:Hg19::chr12:52908829..52908860,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=102bp_to_CU687195_5end | |association_with_transcript=102bp_to_CU687195_5end | ||
|cluster_id=chr12:52908829..52908860,+ | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_3_at_CU687195_5end | |description=CAGE_peak_3_at_CU687195_5end | ||
|id=chr12:52908829..52908860,+ | |id=chr12:52908829..52908860,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.32e-25!43;CL:0000066!2.47e-19!254;CL:0000223!1.48e-18!59;CL:0002159!3.90e-16!13;CL:0002251!4.80e-15!21;CL:0002368!2.22e-14!13;CL:0000244!1.23e-11!4;CL:0000731!1.23e-11!4;CL:0000076!2.67e-10!62;CL:0000349!4.83e-09!3;CL:0002577!4.83e-09!3;CL:0002166!4.96e-09!3;CL:0002328!1.04e-08!3;CL:0002621!2.82e-08!3;CL:0000240!7.38e-08!6;CL:0000311!7.38e-08!6;CL:0000079!7.38e-08!6;CL:0000237!7.38e-08!6;CL:0000036!7.38e-08!6;CL:0000357!7.38e-08!6;CL:0000114!7.38e-08!6;CL:0002077!8.83e-08!33;CL:0002202!4.04e-07!9;CL:0002632!4.04e-07!9;CL:0002327!4.37e-07!4;CL:0000575!5.18e-07!2 | |ontology_enrichment_celltype=CL:0002076!1.32e-25!43;CL:0000066!2.47e-19!254;CL:0000223!1.48e-18!59;CL:0002159!3.90e-16!13;CL:0002251!4.80e-15!21;CL:0002368!2.22e-14!13;CL:0000244!1.23e-11!4;CL:0000731!1.23e-11!4;CL:0000076!2.67e-10!62;CL:0000349!4.83e-09!3;CL:0002577!4.83e-09!3;CL:0002166!4.96e-09!3;CL:0002328!1.04e-08!3;CL:0002621!2.82e-08!3;CL:0000240!7.38e-08!6;CL:0000311!7.38e-08!6;CL:0000079!7.38e-08!6;CL:0000237!7.38e-08!6;CL:0000036!7.38e-08!6;CL:0000357!7.38e-08!6;CL:0000114!7.38e-08!6;CL:0002077!8.83e-08!33;CL:0002202!4.04e-07!9;CL:0002632!4.04e-07!9;CL:0002327!4.37e-07!4;CL:0000575!5.18e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.18e-27;14!CL:0000244;1.94e-20;4!CL:0000731;1.94e-20;4!CL:0002166;1.95e-15;3!CL:0002577;2.10e-15;3!CL:0000240;6.12e-14;6!CL:0000311;6.12e-14;6!CL:0000079;6.12e-14;6!CL:0000237;6.12e-14;6!CL:0002076;2.64e-12;42!CL:0002327;3.43e-12;4!CL:0000575;9.74e-12;2!CL:0002077;1.69e-11;34!CL:0000312;9.15e-10;5!CL:0000622;2.98e-09;5!CL:0000362;4.66e-09;9!CL:0002251;3.12e-08;20!CL:0000154;8.77e-08;6!CL:0002328;1.49e-07;3!CL:0002231;1.49e-07;3!CL:0002623;1.81e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.08e-27,14;CL:0000244,2.38e-20,4;CL:0000731,2.38e-20,4;CL:0000066,3.10e-18,253;CL:0002577,1.64e-15,3;CL:0002166,1.72e-15,3;CL:0002076,2.24e-14,42;CL:0000240,7.10e-14,6;CL:0000311,7.10e-14,6;CL:0000079,7.10e-14,6;CL:0000237,7.10e-14,6;CL:0000036,7.10e-14,6;CL:0000357,7.10e-14,6;CL:0000114,7.10e-14,6;CL:0002077,7.56e-13,34;CL:0002327,3.37e-12,4;CL:0000575,9.75e-12,2;CL:0000223,9.53e-10,58;CL:0000312,1.05e-09,5;CL:0000622,2.59e-09,5;CL:0000362,4.61e-09,9;CL:0002251,2.97e-08,20;CL:0000154,7.79e-08,6;CL:0002328,1.49e-07,3;CL:0002231,1.49e-07,3;CL:0000076,1.80e-07,63;CL:0002623,1.81e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;6.12e-14;6!CL:0000114;6.12e-14;6 | |||
|ontology_enrichment_disease=DOID:1749!4.54e-19!14 | |ontology_enrichment_disease=DOID:1749!4.54e-19!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!8.35e-15!21;UBERON:0000161!1.80e-14!35;UBERON:0000365!1.96e-13!5;UBERON:0003729!9.06e-13!5;UBERON:0000165!1.64e-12!28;UBERON:0000930!1.64e-12!28;UBERON:0004119!1.16e-11!169;UBERON:0000925!1.16e-11!169;UBERON:0006595!1.16e-11!169;UBERON:0003102!1.56e-11!95;UBERON:0001004!3.74e-11!72;UBERON:0005910!4.01e-11!6;UBERON:0005631!1.39e-10!14;UBERON:0000158!1.39e-10!14;UBERON:0003343!3.56e-10!4;UBERON:0004785!3.56e-10!4;UBERON:0000344!3.05e-09!12;UBERON:0004815!1.04e-08!3;UBERON:0002031!1.04e-08!3;UBERON:0001444!1.33e-08!48;UBERON:0001949!2.82e-08!3;UBERON:0001723!5.27e-08!3;UBERON:0001033!5.27e-08!3;UBERON:0010056!5.27e-08!3;UBERON:0004923!2.27e-07!57;UBERON:0001911!4.37e-07!4;UBERON:0005333!4.37e-07!4;UBERON:0008425!4.37e-07!4;UBERON:0005311!4.37e-07!4;UBERON:0001987!7.45e-07!4;UBERON:0004340!7.45e-07!4;UBERON:0001708!7.59e-07!4;UBERON:0001704!7.59e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.20e-16;5!UBERON:0005910;1.13e-13;6!UBERON:0001911;3.43e-12;4!UBERON:0001708;1.05e-11;4!UBERON:0008895;1.05e-11;4!UBERON:0001987;1.11e-11;4!UBERON:0000486;3.62e-10;12!UBERON:0011159;1.85e-09;5!UBERON:0004815;1.49e-07;3!UBERON:0002031;1.49e-07;3!UBERON:0001043;2.63e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.58e-16,5;UBERON:0005910,1.28e-13,6;UBERON:0001911,3.37e-12,4;UBERON:0005333,3.37e-12,4;UBERON:0008425,3.37e-12,4;UBERON:0005311,3.37e-12,4;UBERON:0003102,3.43e-12,99;UBERON:0001987,9.21e-12,4;UBERON:0004340,9.21e-12,4;UBERON:0001708,9.56e-12,4;UBERON:0008895,9.56e-12,4;UBERON:0011159,1.72e-09,5;UBERON:0004119,1.05e-08,160;UBERON:0000925,1.05e-08,160;UBERON:0006595,1.05e-08,160;UBERON:0000033,1.38e-08,56;UBERON:0010188,5.57e-08,6;UBERON:0002539,5.57e-08,6;UBERON:0008816,5.57e-08,6;UBERON:0000153,1.48e-07,62;UBERON:0007811,1.48e-07,62;UBERON:0004815,1.49e-07,3;UBERON:0002031,1.49e-07,3;UBERON:0001043,3.04e-07,3;UBERON:0009143,3.04e-07,3;UBERON:0005157,3.18e-07,47;UBERON:0006554,4.88e-07,47;UBERON:0003124,6.59e-07,7;UBERON:0001008,7.35e-07,48 | |||
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| ||
|short_description=p3@CU687195 | |short_description=p3@CU687195 | ||
}} | }} |
Latest revision as of 09:35, 24 July 2015
Short description: | p3@CU687195 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CU687195_5end |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | 102bp_to_CU687195_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.08e-27 | 14 |
transitional epithelial cell | 2.38e-20 | 4 |
urothelial cell | 2.38e-20 | 4 |
epithelial cell | 3.10e-18 | 253 |
placental epithelial cell | 1.64e-15 | 3 |
epithelial cell of Malassez | 1.72e-15 | 3 |
endo-epithelial cell | 2.24e-14 | 42 |
stratified squamous epithelial cell | 7.10e-14 | 6 |
keratin accumulating cell | 7.10e-14 | 6 |
stratified epithelial cell | 7.10e-14 | 6 |
keratinizing barrier epithelial cell | 7.10e-14 | 6 |
epithelial fate stem cell | 7.10e-14 | 6 |
stratified epithelial stem cell | 7.10e-14 | 6 |
surface ectodermal cell | 7.10e-14 | 6 |
ecto-epithelial cell | 7.56e-13 | 34 |
mammary gland epithelial cell | 3.37e-12 | 4 |
corneal epithelial cell | 9.75e-12 | 2 |
endodermal cell | 9.53e-10 | 58 |
keratinocyte | 1.05e-09 | 5 |
acinar cell | 2.59e-09 | 5 |
epidermal cell | 4.61e-09 | 9 |
epithelial cell of alimentary canal | 2.97e-08 | 20 |
protein secreting cell | 7.79e-08 | 6 |
bronchial epithelial cell | 1.49e-07 | 3 |
epithelial cell of prostate | 1.49e-07 | 3 |
squamous epithelial cell | 1.80e-07 | 63 |
acinar cell of salivary gland | 1.81e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.58e-16 | 5 |
transitional epithelium | 1.28e-13 | 6 |
mammary gland | 3.37e-12 | 4 |
mammary bud | 3.37e-12 | 4 |
mammary ridge | 3.37e-12 | 4 |
mammary placode | 3.37e-12 | 4 |
surface structure | 3.43e-12 | 99 |
placenta | 9.21e-12 | 4 |
allantois | 9.21e-12 | 4 |
jaw skeleton | 9.56e-12 | 4 |
splanchnocranium | 9.56e-12 | 4 |
primary subdivision of cranial skeletal system | 1.72e-09 | 5 |
endoderm-derived structure | 1.05e-08 | 160 |
endoderm | 1.05e-08 | 160 |
presumptive endoderm | 1.05e-08 | 160 |
head | 1.38e-08 | 56 |
protuberance | 5.57e-08 | 6 |
pharyngeal arch | 5.57e-08 | 6 |
embryonic head | 5.57e-08 | 6 |
anterior region of body | 1.48e-07 | 62 |
craniocervical region | 1.48e-07 | 62 |
lower respiratory tract epithelium | 1.49e-07 | 3 |
epithelium of bronchus | 1.49e-07 | 3 |
esophagus | 3.04e-07 | 3 |
esophageal region | 3.04e-07 | 3 |
epithelial fold | 3.18e-07 | 47 |
urinary system structure | 4.88e-07 | 47 |
chorion | 6.59e-07 | 7 |
renal system | 7.35e-07 | 48 |