FFCP PHASE1:Hg19::chr11:35198186..35198209,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:35198186..35198209,+
|short_description=p7@CD44
|description=CAGE_peak_7_at_CD44_5end
|association_with_transcript=0bp_to_ENST00000527889,ENST00000531118_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=960 | |EntrezGene=960 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1681 | |HGNC=1681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000527889,ENST00000531118_5end | |||
|cluster_id=chr11:35198186..35198209,+ | |||
|coexpression_cluster_id=C620 | |||
|description=CAGE_peak_7_at_CD44_5end | |||
|id=chr11:35198186..35198209,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.28e-18!42;CL:0000860!1.26e-17!45;CL:0000557!6.88e-16!71;CL:0000766!1.38e-15!76;CL:0002009!3.40e-15!65;CL:0000839!8.12e-15!70;CL:0002194!2.18e-14!63;CL:0000576!2.18e-14!63;CL:0000040!2.18e-14!63;CL:0000559!2.18e-14!63;CL:0002371!1.39e-11!591;CL:0000723!5.08e-11!436;CL:0000048!5.60e-11!430;CL:0000144!8.52e-10!625;CL:0000034!1.44e-09!444;CL:0000055!1.10e-08!180;CL:0000003!2.99e-08!722;CL:0002320!7.61e-08!365;CL:0000134!1.98e-07!358;CL:0000548!2.86e-07!679;CL:0000004!2.86e-07!679;CL:0000255!2.86e-07!679;CL:0000012!4.89e-07!682;CL:0000763!5.34e-07!112;CL:0000049!5.34e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.21e-20;33!CL:0002057;7.21e-20;33!CL:0000473;8.35e-17;39!CL:0000234;8.35e-17;39!CL:0000576;8.00e-11;48!CL:0000766;1.28e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.16e-20,48;CL:0000234,2.16e-20,48;CL:0000860,4.99e-20,42;CL:0002057,4.99e-20,42;CL:0000557,6.62e-18,67;CL:0000766,1.67e-17,72;CL:0002009,5.83e-17,61;CL:0000839,2.42e-16,66;CL:0002194,4.60e-16,59;CL:0000576,4.60e-16,59;CL:0000040,4.60e-16,59;CL:0000559,4.60e-16,59;CL:0000723,1.99e-11,433;CL:0000048,2.61e-11,427;CL:0000034,3.11e-10,441;CL:0000763,9.36e-08,108;CL:0000049,9.36e-08,108;CL:0002320,2.26e-07,361;CL:0000134,4.29e-07,354;CL:0000192,9.21e-07,43;CL:0000514,9.21e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002057;2.83e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.68e-17!167;UBERON:0002371!1.39e-14!80;UBERON:0004765!7.65e-12!101;UBERON:0001434!7.65e-12!101;UBERON:0001474!9.16e-12!86;UBERON:0002390!7.21e-10!102;UBERON:0003061!7.21e-10!102;UBERON:0002193!5.35e-08!112;UBERON:0003102!1.60e-07!95;UBERON:0003081!1.91e-07!216;UBERON:0002384!3.98e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,8.04e-20,167;UBERON:0002371,2.52e-16,76;UBERON:0004765,1.31e-14,90;UBERON:0001434,3.17e-14,100;UBERON:0001474,1.20e-13,82;UBERON:0002390,3.19e-10,98;UBERON:0003061,3.19e-10,98;UBERON:0002405,3.19e-10,93;UBERON:0000926,2.18e-09,315;UBERON:0004120,2.18e-09,315;UBERON:0006603,2.18e-09,315;UBERON:0003081,1.59e-08,203;UBERON:0002193,2.08e-08,108;UBERON:0003102,3.59e-07,99;UBERON:0002384,8.28e-07,371 | |||
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| ||
|short_description=p7@CD44 | |||
}} | }} |
Latest revision as of 19:12, 17 September 2015
Short description: | p7@CD44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CD44_5end |
Coexpression cluster: | C620_CD14_Smooth_Fibroblast_Mast_signet_normal_meningioma |
Association with transcript: | 0bp_to_ENST00000527889, ENST00000531118_5end |
EntrezGene: | CD44 |
HGNC: | 1681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.16e-20 | 48 |
phagocyte | 2.16e-20 | 48 |
classical monocyte | 4.99e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-20 | 42 |
granulocyte monocyte progenitor cell | 6.62e-18 | 67 |
myeloid leukocyte | 1.67e-17 | 72 |
macrophage dendritic cell progenitor | 5.83e-17 | 61 |
myeloid lineage restricted progenitor cell | 2.42e-16 | 66 |
monopoietic cell | 4.60e-16 | 59 |
monocyte | 4.60e-16 | 59 |
monoblast | 4.60e-16 | 59 |
promonocyte | 4.60e-16 | 59 |
somatic stem cell | 1.99e-11 | 433 |
multi fate stem cell | 2.61e-11 | 427 |
stem cell | 3.11e-10 | 441 |
myeloid cell | 9.36e-08 | 108 |
common myeloid progenitor | 9.36e-08 | 108 |
connective tissue cell | 2.26e-07 | 361 |
mesenchymal cell | 4.29e-07 | 354 |
smooth muscle cell | 9.21e-07 | 43 |
smooth muscle myoblast | 9.21e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 8.04e-20 | 167 |
bone marrow | 2.52e-16 | 76 |
skeletal element | 1.31e-14 | 90 |
skeletal system | 3.17e-14 | 100 |
bone element | 1.20e-13 | 82 |
hematopoietic system | 3.19e-10 | 98 |
blood island | 3.19e-10 | 98 |
immune system | 3.19e-10 | 93 |
mesoderm | 2.18e-09 | 315 |
mesoderm-derived structure | 2.18e-09 | 315 |
presumptive mesoderm | 2.18e-09 | 315 |
lateral plate mesoderm | 1.59e-08 | 203 |
hemolymphoid system | 2.08e-08 | 108 |
surface structure | 3.59e-07 | 99 |
connective tissue | 8.28e-07 | 371 |