FFCP PHASE1:Hg19::chr1:183213326..183213338,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:183213326..183213338,+ | |||
|coexpression_cluster_id=C362 | |||
|description=CAGE_peak_at_chr1:183213326..183213338,+ | |description=CAGE_peak_at_chr1:183213326..183213338,+ | ||
|id=chr1:183213326..183213338,+ | |id=chr1:183213326..183213338,+ | ||
|ontology_enrichment_celltype=CL:0002076!4.82e-20!43;CL:0000066!5.73e-18!254;CL:0000244!4.15e-14!4;CL:0000731!4.15e-14!4;CL:0000223!2.37e-13!59;CL:0002368!8.77e-12!13;CL:0002621!2.44e-11!3;CL:0002166!6.60e-11!3;CL:0002159!6.19e-09!13;CL:0002251!2.36e-08!21;CL:0002536!1.29e-07!2 | |ontology_enrichment_celltype=CL:0002076!4.82e-20!43;CL:0000066!5.73e-18!254;CL:0000244!4.15e-14!4;CL:0000731!4.15e-14!4;CL:0000223!2.37e-13!59;CL:0002368!8.77e-12!13;CL:0002621!2.44e-11!3;CL:0002166!6.60e-11!3;CL:0002159!6.19e-09!13;CL:0002251!2.36e-08!21;CL:0002536!1.29e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002621;2.74e-34;3!CL:0000244;1.42e-25;4!CL:0000731;1.42e-25;4!CL:0002076;2.61e-19;42!CL:0002231;9.09e-16;3!CL:0002368;6.73e-14;13!CL:0002159;6.35e-13;14!CL:0000362;1.17e-11;9!CL:0000312;6.95e-10;5!CL:0000240;2.21e-08;6!CL:0000311;2.21e-08;6!CL:0000079;2.21e-08;6!CL:0000237;2.21e-08;6!CL:0000317;9.81e-07;2!CL:1000448;9.81e-07;2!CL:0002308;9.81e-07;2!CL:0002536;9.81e-07;2!CL:0002140;9.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,2.45e-34,3;CL:0000244,1.10e-25,4;CL:0000731,1.10e-25,4;CL:0002076,2.33e-20,42;CL:0002231,7.27e-16,3;CL:0000223,1.91e-14,58;CL:0002368,6.97e-14,13;CL:0002159,6.76e-13,14;CL:0000066,5.57e-12,253;CL:0000362,1.26e-11,9;CL:0000312,7.77e-10,5;CL:0000240,2.43e-08,6;CL:0000311,2.43e-08,6;CL:0000079,2.43e-08,6;CL:0000237,2.43e-08,6;CL:0000036,2.43e-08,6;CL:0000357,2.43e-08,6;CL:0000114,2.43e-08,6;CL:0000317,9.54e-07,2;CL:1000448,9.54e-07,2;CL:0002308,9.54e-07,2;CL:0002140,9.54e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;1.54e-08;58!CL:0000357;2.21e-08;6!CL:0000114;2.21e-08;6 | |||
|ontology_enrichment_disease=DOID:4468!2.02e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:4468;9.81e-07;2 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!9.74e-17!5;UBERON:0005910!6.91e-14!6;UBERON:0000344!2.08e-11!12;UBERON:0001949!2.44e-11!3;UBERON:0003729!1.12e-09!5;UBERON:0001708!2.87e-08!4;UBERON:0001704!2.87e-08!4;UBERON:0003343!2.52e-07!4;UBERON:0004785!2.52e-07!4;UBERON:0000161!2.76e-07!35;UBERON:0004119!6.42e-07!169;UBERON:0000925!6.42e-07!169;UBERON:0006595!6.42e-07!169;UBERON:0003127!6.46e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.74e-34;3!UBERON:0000486;4.34e-33;12!UBERON:0000365;1.33e-20;5!UBERON:0005910;2.81e-17;6!UBERON:0003929;4.37e-15;7!UBERON:0003350;2.83e-13;8!UBERON:0001828;2.83e-13;8!UBERON:0010371;2.90e-12;31!UBERON:0003729;2.25e-08;13!UBERON:0005911;3.54e-08;36!UBERON:0001003;3.36e-07;15!UBERON:0007376;3.36e-07;15!UBERON:0002419;9.81e-07;2!UBERON:0007771;9.81e-07;2!UBERON:0003297;9.81e-07;2!UBERON:0001821;9.81e-07;2!UBERON:0003487;9.81e-07;2!UBERON:0001820;9.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.45e-34,3;UBERON:0000365,1.09e-20,5;UBERON:0005910,2.38e-17,6;UBERON:0003350,2.71e-13,8;UBERON:0001828,2.71e-13,8;UBERON:0003729,2.19e-08,13;UBERON:0004119,2.92e-08,160;UBERON:0000925,2.92e-08,160;UBERON:0006595,2.92e-08,160;UBERON:0003102,5.46e-08,99;UBERON:0005911,7.68e-08,82;UBERON:0000161,1.03e-07,36;UBERON:0001003,3.50e-07,15;UBERON:0007376,3.50e-07,15;UBERON:0007383,3.50e-07,15;UBERON:0002419,9.54e-07,2;UBERON:0007771,9.54e-07,2;UBERON:0003297,9.54e-07,2;UBERON:0001821,9.54e-07,2;UBERON:0003487,9.54e-07,2;UBERON:0001820,9.54e-07,2;UBERON:0005089,9.54e-07,2;UBERON:0005088,9.54e-07,2;UBERON:0001004,9.83e-07,74 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,4.90943017063502,2.58124135850103,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09750285408626,0,4.62433273093502,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,2.18376766658517,0.992425680696705,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,3.40860999515584,1.38121483403844,0,0,0.131124414959424,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,1.81813406897076,2.11409074101617,4.59405764980503,0.50578890427775,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0,0,0,0.43050537267123,3.36942951335251,1.33029046061003,2.98640420269047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,1.26598838716816,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.11796972334774,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.162806537221949,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:183213326..183213338,+ | |short_description=p@chr1:183213326..183213338,+ | ||
}} | }} |
Latest revision as of 01:11, 28 July 2015
Short description: | p@chr1:183213326..183213338, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183213326..183213338, + |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 2.45e-34 | 3 |
transitional epithelial cell | 1.10e-25 | 4 |
urothelial cell | 1.10e-25 | 4 |
endo-epithelial cell | 2.33e-20 | 42 |
epithelial cell of prostate | 7.27e-16 | 3 |
endodermal cell | 1.91e-14 | 58 |
respiratory epithelial cell | 6.97e-14 | 13 |
general ecto-epithelial cell | 6.76e-13 | 14 |
epithelial cell | 5.57e-12 | 253 |
epidermal cell | 1.26e-11 | 9 |
keratinocyte | 7.77e-10 | 5 |
stratified squamous epithelial cell | 2.43e-08 | 6 |
keratin accumulating cell | 2.43e-08 | 6 |
stratified epithelial cell | 2.43e-08 | 6 |
keratinizing barrier epithelial cell | 2.43e-08 | 6 |
epithelial fate stem cell | 2.43e-08 | 6 |
stratified epithelial stem cell | 2.43e-08 | 6 |
surface ectodermal cell | 2.43e-08 | 6 |
sebum secreting cell | 9.54e-07 | 2 |
epithelial cell of sweat gland | 9.54e-07 | 2 |
epithelial cell of skin gland | 9.54e-07 | 2 |
acinar cell of sebaceous gland | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.45e-34 | 3 |
urothelium | 1.09e-20 | 5 |
transitional epithelium | 2.38e-17 | 6 |
epithelium of mucosa | 2.71e-13 | 8 |
gingiva | 2.71e-13 | 8 |
mouth mucosa | 2.19e-08 | 13 |
endoderm-derived structure | 2.92e-08 | 160 |
endoderm | 2.92e-08 | 160 |
presumptive endoderm | 2.92e-08 | 160 |
surface structure | 5.46e-08 | 99 |
endo-epithelium | 7.68e-08 | 82 |
orifice | 1.03e-07 | 36 |
skin epidermis | 3.50e-07 | 15 |
outer epithelium | 3.50e-07 | 15 |
enveloping layer of ectoderm | 3.50e-07 | 15 |
skin gland | 9.54e-07 | 2 |
epidermis gland | 9.54e-07 | 2 |
gland of integumental system | 9.54e-07 | 2 |
sebaceous gland | 9.54e-07 | 2 |
skin sebaceous gland | 9.54e-07 | 2 |
sweat gland | 9.54e-07 | 2 |
sweat gland placode | 9.54e-07 | 2 |
sebaceous gland placode | 9.54e-07 | 2 |
respiratory system | 9.83e-07 | 74 |