FFCP PHASE1:Hg19::chr22:38071636..38071652,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3956 | |EntrezGene=3956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6561 | |HGNC=6561 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_ENST00000464120_5end | |association_with_transcript=-6bp_to_ENST00000464120_5end | ||
|cluster_id=chr22:38071636..38071652,+ | |||
|coexpression_cluster_id=C3181 | |||
|description=CAGE_peak_1_at_LGALS1_5end | |description=CAGE_peak_1_at_LGALS1_5end | ||
|id=chr22:38071636..38071652,+ | |id=chr22:38071636..38071652,+ | ||
|ontology_enrichment_celltype=CL:0002371!3.42e-41!591;CL:0000055!1.28e-38!180;CL:0000144!2.40e-36!625;CL:0000222!7.30e-31!119;CL:0000548!4.46e-27!679;CL:0000004!4.46e-27!679;CL:0000255!4.46e-27!679;CL:0000012!3.62e-26!682;CL:0000183!1.13e-25!59;CL:0000680!1.17e-24!57;CL:0000056!1.17e-24!57;CL:0000355!1.17e-24!57;CL:0000187!4.94e-24!54;CL:0000048!2.77e-21!430;CL:0000192!8.73e-21!42;CL:0000514!8.73e-21!42;CL:0000723!3.15e-20!436;CL:0000057!2.96e-19!75;CL:0000393!1.54e-18!60;CL:0000211!1.54e-18!60;CL:0000034!7.89e-18!444;CL:0000220!1.53e-16!246;CL:0000359!1.68e-16!32;CL:0000003!4.30e-16!722;CL:0002321!9.69e-16!248;CL:0002078!1.08e-08!44;CL:0002320!1.87e-08!365;CL:0000115!2.27e-08!35;CL:0000213!5.01e-08!57;CL:0000215!5.01e-08!57;CL:0002620!6.88e-08!23;CL:0000063!4.40e-07!578;CL:0000134!4.76e-07!358 | |ontology_enrichment_celltype=CL:0002371!3.42e-41!591;CL:0000055!1.28e-38!180;CL:0000144!2.40e-36!625;CL:0000222!7.30e-31!119;CL:0000548!4.46e-27!679;CL:0000004!4.46e-27!679;CL:0000255!4.46e-27!679;CL:0000012!3.62e-26!682;CL:0000183!1.13e-25!59;CL:0000680!1.17e-24!57;CL:0000056!1.17e-24!57;CL:0000355!1.17e-24!57;CL:0000187!4.94e-24!54;CL:0000048!2.77e-21!430;CL:0000192!8.73e-21!42;CL:0000514!8.73e-21!42;CL:0000723!3.15e-20!436;CL:0000057!2.96e-19!75;CL:0000393!1.54e-18!60;CL:0000211!1.54e-18!60;CL:0000034!7.89e-18!444;CL:0000220!1.53e-16!246;CL:0000359!1.68e-16!32;CL:0000003!4.30e-16!722;CL:0002321!9.69e-16!248;CL:0002078!1.08e-08!44;CL:0002320!1.87e-08!365;CL:0000115!2.27e-08!35;CL:0000213!5.01e-08!57;CL:0000215!5.01e-08!57;CL:0002620!6.88e-08!23;CL:0000063!4.40e-07!578;CL:0000134!4.76e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.64e-15;32!CL:0000192;3.83e-15;43!CL:0000187;1.54e-13;55!CL:0000393;1.14e-09;61!CL:0000211;1.14e-09;61!CL:0000134;1.00e-08;55!CL:0000057;2.82e-08;73!CL:0002620;6.86e-08;23!CL:0000115;1.54e-07;36!CL:0000723;1.64e-07;61!CL:0002320;2.54e-07;188!CL:0000048;2.75e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.18e-31,121;CL:0000680,5.27e-25,58;CL:0000056,5.27e-25,58;CL:0000355,5.27e-25,58;CL:0000187,2.24e-24,55;CL:0000048,5.66e-22,427;CL:0000192,4.10e-21,43;CL:0000514,4.10e-21,43;CL:0000723,6.69e-21,433;CL:0000057,1.20e-19,76;CL:0000393,6.99e-19,61;CL:0000211,6.99e-19,61;CL:0000034,1.87e-18,441;CL:0000359,1.68e-16,32;CL:0002321,2.60e-16,250;CL:0002078,4.99e-09,45;CL:0000115,1.03e-08,36;CL:0002320,1.09e-08,361;CL:0000213,2.47e-08,58;CL:0000215,2.47e-08,58;CL:0002620,6.88e-08,23;CL:0000134,2.91e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;3.83e-15;43!CL:0000355;4.60e-13;58!CL:0000222;1.94e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.00e-31!83;UBERON:0002329!7.00e-31!83;UBERON:0003077!7.00e-31!83;UBERON:0003059!7.00e-31!83;UBERON:0007282!7.00e-31!83;UBERON:0009618!7.00e-31!83;UBERON:0007285!7.00e-31!83;UBERON:0004290!2.70e-27!70;UBERON:0000486!1.30e-26!82;UBERON:0001134!2.61e-23!61;UBERON:0002036!2.61e-23!61;UBERON:0003082!2.61e-23!61;UBERON:0002049!5.43e-23!79;UBERON:0007798!5.43e-23!79;UBERON:0002385!5.99e-22!63;UBERON:0001015!5.99e-22!63;UBERON:0000383!5.99e-22!63;UBERON:0005256!3.15e-21!143;UBERON:0000055!4.92e-21!69;UBERON:0004872!5.56e-20!84;UBERON:0001981!7.49e-20!60;UBERON:0007500!7.49e-20!60;UBERON:0004537!7.49e-20!60;UBERON:0006965!7.49e-20!60;UBERON:0002204!1.77e-18!167;UBERON:0001637!2.01e-18!42;UBERON:0003509!2.01e-18!42;UBERON:0004572!2.01e-18!42;UBERON:0004535!2.96e-18!110;UBERON:0001009!1.84e-17!113;UBERON:0003914!1.94e-15!118;UBERON:0000490!5.37e-15!138;UBERON:0004573!1.46e-14!33;UBERON:0004571!1.46e-14!33;UBERON:0000926!1.76e-14!448;UBERON:0004120!1.76e-14!448;UBERON:0006603!1.76e-14!448;UBERON:0003081!6.32e-13!216;UBERON:0002100!1.29e-12!216;UBERON:0003102!7.06e-09!95;UBERON:0002384!8.32e-09!375;UBERON:0000947!2.20e-08!21;UBERON:0010191!2.20e-08!21;UBERON:0003104!2.98e-08!238;UBERON:0009142!2.98e-08!238;UBERON:0002199!9.68e-08!45;UBERON:0002416!9.68e-08!45;UBERON:0000480!6.97e-07!626;UBERON:0000467!7.63e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.05e-13;33!UBERON:0004571;3.05e-13;33!UBERON:0001637;5.83e-13;42!UBERON:0003509;5.83e-13;42!UBERON:0004572;5.83e-13;42!UBERON:0007500;1.44e-11;56!UBERON:0001981;1.44e-11;56!UBERON:0004537;1.44e-11;56!UBERON:0000055;7.10e-10;65!UBERON:0002049;9.04e-10;75!UBERON:0007798;9.04e-10;75!UBERON:0003914;1.76e-09;74!UBERON:0000947;2.21e-08;21!UBERON:0010191;2.21e-08;21!UBERON:0002385;6.77e-08;31!UBERON:0001015;6.77e-08;31!UBERON:0000383;6.77e-08;31!UBERON:0002384;1.32e-07;198!UBERON:0002204;2.42e-07;70 | |||
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| ||
|short_description=p1@LGALS1 | |short_description=p1@LGALS1 | ||
}} | }} |
Latest revision as of 05:50, 20 September 2015
Short description: | p1@LGALS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LGALS1_5end |
Coexpression cluster: | C3181_Mesenchymal_Smooth_Hair_Aortic_Fibroblast_Hepatic_tridermal |
Association with transcript: | -6bp_to_ENST00000464120_5end |
EntrezGene: | LGALS1 |
HGNC: | 6561 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.18e-31 | 121 |
muscle precursor cell | 5.27e-25 | 58 |
myoblast | 5.27e-25 | 58 |
multi-potent skeletal muscle stem cell | 5.27e-25 | 58 |
muscle cell | 2.24e-24 | 55 |
multi fate stem cell | 5.66e-22 | 427 |
smooth muscle cell | 4.10e-21 | 43 |
smooth muscle myoblast | 4.10e-21 | 43 |
somatic stem cell | 6.69e-21 | 433 |
fibroblast | 1.20e-19 | 76 |
electrically responsive cell | 6.99e-19 | 61 |
electrically active cell | 6.99e-19 | 61 |
stem cell | 1.87e-18 | 441 |
vascular associated smooth muscle cell | 1.68e-16 | 32 |
embryonic cell | 2.60e-16 | 250 |
meso-epithelial cell | 4.99e-09 | 45 |
endothelial cell | 1.03e-08 | 36 |
connective tissue cell | 1.09e-08 | 361 |
lining cell | 2.47e-08 | 58 |
barrier cell | 2.47e-08 | 58 |
skin fibroblast | 6.88e-08 | 23 |
mesenchymal cell | 2.91e-07 | 354 |