FFCP PHASE1:Hg19::chr16:11375179..11375197,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5619 | |EntrezGene=5619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9447 | |HGNC=9447 | ||
|TSSclassifier=strong | |||
|UniProt=P04553,Q3MN80 | |UniProt=P04553,Q3MN80 | ||
|association_with_transcript=0bp_to_NM_002761,uc002dav.2_5end | |association_with_transcript=0bp_to_NM_002761,uc002dav.2_5end | ||
|cluster_id=chr16:11375179..11375197,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_PRM1_5end | |description=CAGE_peak_1_at_PRM1_5end | ||
|id=chr16:11375179..11375197,- | |id=chr16:11375179..11375197,- | ||
|ontology_enrichment_celltype=CL:0002322!1.96e-10!5;CL:0000540!4.04e-09!6;CL:0000031!4.04e-09!6;CL:0000404!4.04e-09!6;CL:0000047!6.05e-07!8 | |ontology_enrichment_celltype=CL:0002322!1.96e-10!5;CL:0000540!4.04e-09!6;CL:0000031!4.04e-09!6;CL:0000404!4.04e-09!6;CL:0000047!6.05e-07!8 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008801;1.44e-17;1!UBERON:0007297;1.03e-09;2!UBERON:0009117;1.02e-07;10!UBERON:0005564;1.02e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006947!4.35e-18!3;UBERON:0004054!4.35e-18!3;UBERON:0005904!1.06e-13!4;UBERON:0007023!1.58e-13!115;UBERON:0003135!2.98e-13!11;UBERON:0001301!2.50e-07!1;UBERON:0000473!3.54e-07!8;UBERON:0002426!3.57e-07!1;UBERON:0003831!3.57e-07!1;UBERON:0003898!3.57e-07!1;UBERON:0004830!3.57e-07!1;UBERON:0001774!3.57e-07!1;UBERON:0003830!3.57e-07!1;UBERON:0005175!3.57e-07!1;UBERON:0003897!3.57e-07!1;UBERON:0001103!3.57e-07!1;UBERON:0010084!3.57e-07!1;UBERON:0001000!3.78e-07!1;UBERON:0005352!3.78e-07!1;UBERON:0001831!4.01e-07!1;UBERON:0001567!4.01e-07!1;UBERON:0008801!4.01e-07!1;UBERON:0000998!5.37e-07!1;UBERON:0006868!5.37e-07!1;UBERON:0001882!5.69e-07!1;UBERON:0005403!5.69e-07!1;UBERON:0005057!6.78e-07!26;UBERON:0005743!7.96e-07!86 | |ontology_enrichment_uberon=UBERON:0006947!4.35e-18!3;UBERON:0004054!4.35e-18!3;UBERON:0005904!1.06e-13!4;UBERON:0007023!1.58e-13!115;UBERON:0003135!2.98e-13!11;UBERON:0001301!2.50e-07!1;UBERON:0000473!3.54e-07!8;UBERON:0002426!3.57e-07!1;UBERON:0003831!3.57e-07!1;UBERON:0003898!3.57e-07!1;UBERON:0004830!3.57e-07!1;UBERON:0001774!3.57e-07!1;UBERON:0003830!3.57e-07!1;UBERON:0005175!3.57e-07!1;UBERON:0003897!3.57e-07!1;UBERON:0001103!3.57e-07!1;UBERON:0010084!3.57e-07!1;UBERON:0001000!3.78e-07!1;UBERON:0005352!3.78e-07!1;UBERON:0001831!4.01e-07!1;UBERON:0001567!4.01e-07!1;UBERON:0008801!4.01e-07!1;UBERON:0000998!5.37e-07!1;UBERON:0006868!5.37e-07!1;UBERON:0001882!5.69e-07!1;UBERON:0005403!5.69e-07!1;UBERON:0005057!6.78e-07!26;UBERON:0005743!7.96e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0003135;1.43e-24;11!UBERON:0006947;6.44e-23;3!UBERON:0004054;6.44e-23;3!UBERON:0001301;4.44e-18;1!UBERON:0001000;1.44e-17;1!UBERON:0001831;1.44e-17;1!UBERON:0002426;1.44e-17;1!UBERON:0003831;1.44e-17;1!UBERON:0003898;1.44e-17;1!UBERON:0004830;1.44e-17;1!UBERON:0003830;1.44e-17;1!UBERON:0005175;1.44e-17;1!UBERON:0001774;1.44e-17;1!UBERON:0001103;1.44e-17;1!UBERON:0005352;1.44e-17;1!UBERON:0001567;1.44e-17;1!UBERON:0005904;1.86e-17;4!UBERON:0002021;3.72e-14;5!UBERON:0003101;1.76e-12;22!UBERON:0000079;1.76e-12;22!UBERON:0002360;1.51e-09;2!UBERON:0000094;1.51e-09;2!UBERON:0010743;1.51e-09;2!UBERON:0005090;1.86e-09;2!UBERON:0001829;1.86e-09;2!UBERON:0001630;1.86e-09;2!UBERON:0004089;1.86e-09;2!UBERON:0000473;1.99e-09;8!UBERON:0000058;1.52e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,1.43e-24,11;UBERON:0006947,6.44e-23,3;UBERON:0004054,6.44e-23,3;UBERON:0001301,4.44e-18,1;UBERON:0002426,1.22e-17,1;UBERON:0003831,1.22e-17,1;UBERON:0003898,1.22e-17,1;UBERON:0004830,1.22e-17,1;UBERON:0003830,1.22e-17,1;UBERON:0005175,1.22e-17,1;UBERON:0001774,1.22e-17,1;UBERON:0001103,1.22e-17,1;UBERON:0010084,1.22e-17,1;UBERON:0001000,1.44e-17,1;UBERON:0005352,1.44e-17,1;UBERON:0001831,1.70e-17,1;UBERON:0001567,1.70e-17,1;UBERON:0008801,1.70e-17,1;UBERON:0005904,1.86e-17,4;UBERON:0002021,3.84e-14,5;UBERON:0003101,1.76e-12,22;UBERON:0000079,1.76e-12,22;UBERON:0002360,1.44e-09,2;UBERON:0000094,1.44e-09,2;UBERON:0010743,1.44e-09,2;UBERON:0005090,1.71e-09,2;UBERON:0001630,1.71e-09,2;UBERON:0000473,1.99e-09,8;UBERON:0001829,2.02e-09,2;UBERON:0004089,2.02e-09,2;UBERON:0002553,7.67e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3556.67130560264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4375522928972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9206808901064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4132393686937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,1.60515529459758,0.234264445725339,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,99.9436542344412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0,0.321506296930038,0,0.83088067605837,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0,8.2046545696302,2.26864526599546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.735444965261716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,13149.1954935271,14835.2981378365,0,0,0,0,0.193766729508018,0.0620747142958579,0,0.636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3556.67130560264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4375522928972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9206808901064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4132393686937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,1.60515529459758,0.234264445725339,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,99.9436542344412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0,0.321506296930038,0,0.83088067605837,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0,8.2046545696302,2.26864526599546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.735444965261716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,13149.1954935271,14835.2981378365,0,0,0,0,0.193766729508018,0.0620747142958579,0,0.636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@PRM1 | |short_description=p1@PRM1 | ||
}} | }} |
Latest revision as of 06:08, 20 September 2015
Short description: | p1@PRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRM1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_NM_002761, uc002dav.2_5end |
EntrezGene: | PRM1 |
HGNC: | 9447 |
UniProt: | P04553Q3MN80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 1.43e-24 | 11 |
male genital duct | 6.44e-23 | 3 |
internal male genitalia | 6.44e-23 | 3 |
epididymis | 4.44e-18 | 1 |
chest muscle | 1.22e-17 | 1 |
respiratory system muscle | 1.22e-17 | 1 |
skeletal muscle of trunk | 1.22e-17 | 1 |
respiratory system skeletal muscle | 1.22e-17 | 1 |
thoracic segment muscle | 1.22e-17 | 1 |
chest organ | 1.22e-17 | 1 |
muscle of trunk | 1.22e-17 | 1 |
diaphragm | 1.22e-17 | 1 |
future diaphragm | 1.22e-17 | 1 |
vas deferens | 1.44e-17 | 1 |
spermatic cord | 1.44e-17 | 1 |
parotid gland | 1.70e-17 | 1 |
cheek | 1.70e-17 | 1 |
parotid gland primordium | 1.70e-17 | 1 |
duct of male reproductive system | 1.86e-17 | 4 |
occipital lobe | 3.84e-14 | 5 |
male organism | 1.76e-12 | 22 |
male reproductive system | 1.76e-12 | 22 |
meninx | 1.44e-09 | 2 |
membrane organ | 1.44e-09 | 2 |
meningeal cluster | 1.44e-09 | 2 |
muscle structure | 1.71e-09 | 2 |
muscle organ | 1.71e-09 | 2 |
testis | 1.99e-09 | 8 |
major salivary gland | 2.02e-09 | 2 |
midface | 2.02e-09 | 2 |
anatomical cavity | 7.67e-07 | 61 |