FFCP PHASE1:Hg19::chr2:55209681..55209759,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_AK172726_5end | |association_with_transcript=-6bp_to_AK172726_5end | ||
|cluster_id=chr2:55209681..55209759,- | |||
|description=CAGE_peak_10_at_RTN4_5end | |description=CAGE_peak_10_at_RTN4_5end | ||
|id=chr2:55209681..55209759,- | |id=chr2:55209681..55209759,- | ||
|ontology_enrichment_celltype=CL:0000055!9.30e-13!180;CL:0000057!1.63e-08!75 | |ontology_enrichment_celltype=CL:0000055!9.30e-13!180;CL:0000057!1.63e-08!75 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.55e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!2.99e-13!625;UBERON:0000480!6.41e-13!626;UBERON:0000468!1.83e-12!659;UBERON:0000475!3.73e-09!365;UBERON:0000477!5.47e-09!286;UBERON:0002616!1.11e-08!59;UBERON:0001049!1.17e-08!57;UBERON:0005068!1.17e-08!57;UBERON:0006241!1.17e-08!57;UBERON:0007135!1.17e-08!57;UBERON:0004111!1.54e-08!241;UBERON:0000923!2.84e-08!604;UBERON:0005291!2.84e-08!604;UBERON:0006598!2.84e-08!604;UBERON:0002532!2.84e-08!604;UBERON:0002050!4.03e-08!605;UBERON:0005423!4.03e-08!605;UBERON:0000119!4.25e-08!312;UBERON:0000483!4.36e-08!309;UBERON:0000922!7.81e-08!612;UBERON:0000062!1.26e-07!511;UBERON:0002020!1.88e-07!34;UBERON:0003528!1.88e-07!34;UBERON:0003075!3.58e-07!86;UBERON:0007284!3.58e-07!86;UBERON:0001017!3.98e-07!82;UBERON:0000025!4.17e-07!194;UBERON:0000955!5.09e-07!69;UBERON:0006238!5.09e-07!69;UBERON:0003080!9.68e-07!42 | |ontology_enrichment_uberon=UBERON:0000467!2.99e-13!625;UBERON:0000480!6.41e-13!626;UBERON:0000468!1.83e-12!659;UBERON:0000475!3.73e-09!365;UBERON:0000477!5.47e-09!286;UBERON:0002616!1.11e-08!59;UBERON:0001049!1.17e-08!57;UBERON:0005068!1.17e-08!57;UBERON:0006241!1.17e-08!57;UBERON:0007135!1.17e-08!57;UBERON:0004111!1.54e-08!241;UBERON:0000923!2.84e-08!604;UBERON:0005291!2.84e-08!604;UBERON:0006598!2.84e-08!604;UBERON:0002532!2.84e-08!604;UBERON:0002050!4.03e-08!605;UBERON:0005423!4.03e-08!605;UBERON:0000119!4.25e-08!312;UBERON:0000483!4.36e-08!309;UBERON:0000922!7.81e-08!612;UBERON:0000062!1.26e-07!511;UBERON:0002020!1.88e-07!34;UBERON:0003528!1.88e-07!34;UBERON:0003075!3.58e-07!86;UBERON:0007284!3.58e-07!86;UBERON:0001017!3.98e-07!82;UBERON:0000025!4.17e-07!194;UBERON:0000955!5.09e-07!69;UBERON:0006238!5.09e-07!69;UBERON:0003080!9.68e-07!42 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,4.78e-08,306;UBERON:0004111,5.88e-08,240;UBERON:0010314,6.71e-08,132;UBERON:0000119,8.01e-08,309;UBERON:0003075,9.96e-08,82;UBERON:0007284,9.96e-08,82;UBERON:0001049,1.27e-07,56;UBERON:0005068,1.27e-07,56;UBERON:0006241,1.27e-07,56;UBERON:0007135,1.27e-07,56;UBERON:0000073,5.49e-07,53;UBERON:0002616,5.49e-07,53;UBERON:0003528,7.98e-07,34;UBERON:0002020,7.98e-07,34 | |||
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| ||
|short_description=p10@RTN4 | |short_description=p10@RTN4 | ||
}} | }} |
Latest revision as of 16:34, 17 September 2015
Short description: | p10@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RTN4_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_AK172726_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.55e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
epithelium | 4.78e-08 | 306 |
anatomical conduit | 5.88e-08 | 240 |
structure with developmental contribution from neural crest | 6.71e-08 | 132 |
cell layer | 8.01e-08 | 309 |
neural plate | 9.96e-08 | 82 |
presumptive neural plate | 9.96e-08 | 82 |
neural tube | 1.27e-07 | 56 |
neural rod | 1.27e-07 | 56 |
future spinal cord | 1.27e-07 | 56 |
neural keel | 1.27e-07 | 56 |
regional part of nervous system | 5.49e-07 | 53 |
regional part of brain | 5.49e-07 | 53 |
brain grey matter | 7.98e-07 | 34 |
gray matter | 7.98e-07 | 34 |