FFCP PHASE1:Hg19::chr13:43406546..43406562,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:43406546..43406562,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr13:43406546..43406562,- | |description=CAGE_peak_at_chr13:43406546..43406562,- | ||
|id=chr13:43406546..43406562,- | |id=chr13:43406546..43406562,- | ||
|ontology_enrichment_celltype=CL:0002057!1.29e-79!42;CL:0000860!5.78e-74!45;CL:0002194!1.85e-50!63;CL:0000576!1.85e-50!63;CL:0000040!1.85e-50!63;CL:0000559!1.85e-50!63;CL:0002009!9.01e-49!65;CL:0000839!5.74e-45!70;CL:0000766!1.24e-44!76;CL:0000557!2.86e-44!71;CL:0000763!1.10e-28!112;CL:0000049!1.10e-28!112;CL:0002087!1.27e-26!119;CL:0002031!2.45e-25!124;CL:0000738!8.04e-24!140;CL:0002032!2.18e-19!165;CL:0000837!2.18e-19!165;CL:0000037!2.24e-18!172;CL:0000566!2.24e-18!172;CL:0000988!4.58e-17!182;CL:0000134!6.77e-11!358;CL:0002320!1.45e-10!365;CL:0000219!2.15e-09!390;CL:0000048!8.48e-09!430;CL:0000723!1.38e-08!436;CL:0000034!2.59e-08!444 | |ontology_enrichment_celltype=CL:0002057!1.29e-79!42;CL:0000860!5.78e-74!45;CL:0002194!1.85e-50!63;CL:0000576!1.85e-50!63;CL:0000040!1.85e-50!63;CL:0000559!1.85e-50!63;CL:0002009!9.01e-49!65;CL:0000839!5.74e-45!70;CL:0000766!1.24e-44!76;CL:0000557!2.86e-44!71;CL:0000763!1.10e-28!112;CL:0000049!1.10e-28!112;CL:0002087!1.27e-26!119;CL:0002031!2.45e-25!124;CL:0000738!8.04e-24!140;CL:0002032!2.18e-19!165;CL:0000837!2.18e-19!165;CL:0000037!2.24e-18!172;CL:0000566!2.24e-18!172;CL:0000988!4.58e-17!182;CL:0000134!6.77e-11!358;CL:0002320!1.45e-10!365;CL:0000219!2.15e-09!390;CL:0000048!8.48e-09!430;CL:0000723!1.38e-08!436;CL:0000034!2.59e-08!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.17e-82;33!CL:0002057;3.17e-82;33!CL:0000473;5.07e-53;39!CL:0000234;5.07e-53;39!CL:0000576;1.86e-38;48!CL:0000766;1.25e-19;69!CL:0000763;1.27e-10;100!CL:0002087;1.12e-09;104!CL:0000738;2.01e-07;136!CL:0002363;4.98e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.99e-69,42;CL:0002057,2.99e-69,42;CL:0000473,2.16e-60,48;CL:0000234,2.16e-60,48;CL:0002194,5.56e-48,59;CL:0000576,5.56e-48,59;CL:0000040,5.56e-48,59;CL:0000559,5.56e-48,59;CL:0002009,2.23e-46,61;CL:0000839,8.63e-43,66;CL:0000557,3.90e-42,67;CL:0000766,3.94e-39,72;CL:0000763,1.29e-25,108;CL:0000049,1.29e-25,108;CL:0002087,5.87e-24,115;CL:0002031,6.86e-23,120;CL:0000738,5.37e-20,136;CL:0002032,1.30e-16,161;CL:0000837,1.30e-16,161;CL:0000037,7.66e-16,168;CL:0000988,6.10e-15,177;CL:0000134,1.68e-07,354;CL:0002320,2.59e-07,361;CL:0002363,5.60e-07,2;CL:0000008,5.60e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;2.76e-49;42!CL:0000049;3.28e-09;108!CL:0000008;4.98e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.40e-45!80;UBERON:0001474!4.67e-42!86;UBERON:0004765!6.88e-38!101;UBERON:0001434!6.88e-38!101;UBERON:0002390!1.16e-34!102;UBERON:0003061!1.16e-34!102;UBERON:0002193!4.20e-31!112;UBERON:0002405!3.73e-30!115;UBERON:0002204!9.25e-21!167;UBERON:0003081!1.54e-17!216;UBERON:0002384!4.12e-10!375;UBERON:0002134!6.38e-07!1;UBERON:0005208!6.38e-07!1;UBERON:0005946!6.38e-07!1;UBERON:0005965!6.38e-07!1;UBERON:0002078!6.38e-07!1 | |ontology_enrichment_uberon=UBERON:0002371!1.40e-45!80;UBERON:0001474!4.67e-42!86;UBERON:0004765!6.88e-38!101;UBERON:0001434!6.88e-38!101;UBERON:0002390!1.16e-34!102;UBERON:0003061!1.16e-34!102;UBERON:0002193!4.20e-31!112;UBERON:0002405!3.73e-30!115;UBERON:0002204!9.25e-21!167;UBERON:0003081!1.54e-17!216;UBERON:0002384!4.12e-10!375;UBERON:0002134!6.38e-07!1;UBERON:0005208!6.38e-07!1;UBERON:0005946!6.38e-07!1;UBERON:0005965!6.38e-07!1;UBERON:0002078!6.38e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;4.98e-07;2!UBERON:0001777;4.98e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.23e-37,76;UBERON:0001474,3.32e-34,82;UBERON:0004765,4.84e-31,90;UBERON:0002405,5.41e-30,93;UBERON:0002390,2.18e-28,98;UBERON:0003061,2.18e-28,98;UBERON:0001434,8.66e-28,100;UBERON:0002193,1.29e-25,108;UBERON:0002204,6.00e-16,167;UBERON:0003081,8.84e-13,203;UBERON:0000926,1.70e-07,315;UBERON:0004120,1.70e-07,315;UBERON:0006603,1.70e-07,315;UBERON:0002384,4.69e-07,371;UBERON:0003566,5.60e-07,2;UBERON:0001777,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0.872389432677388,0,0.242584061187816,1.16214518452842,2.87817521615278,0.309706370895104,2.8769239232215,5.63553554364021,3.54723344832878,7.92915065694223,6.45484683583826,0,0.376484679085209,1.91034305040492,0.224723484445085,7.34601341690166,16.0464513538047,3.83602275479425,0.989553900560148,0.199463657621632,0,0.580418477257168,2.26954089876456,0,3.01498398308092,3.12889751052121,1.73751075764093,0,1.84138817993782,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0.872389432677388,0,0.242584061187816,1.16214518452842,2.87817521615278,0.309706370895104,2.8769239232215,5.63553554364021,3.54723344832878,7.92915065694223,6.45484683583826,0,0.376484679085209,1.91034305040492,0.224723484445085,7.34601341690166,16.0464513538047,3.83602275479425,0.989553900560148,0.199463657621632,0,0.580418477257168,2.26954089876456,0,3.01498398308092,3.12889751052121,1.73751075764093,0,1.84138817993782,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:43406546..43406562,- | |short_description=p@chr13:43406546..43406562,- | ||
}} | }} |
Latest revision as of 16:06, 24 July 2015
Short description: | p@chr13:43406546..43406562, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:43406546..43406562, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.99e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.99e-69 | 42 |
defensive cell | 2.16e-60 | 48 |
phagocyte | 2.16e-60 | 48 |
monopoietic cell | 5.56e-48 | 59 |
monocyte | 5.56e-48 | 59 |
monoblast | 5.56e-48 | 59 |
promonocyte | 5.56e-48 | 59 |
macrophage dendritic cell progenitor | 2.23e-46 | 61 |
myeloid lineage restricted progenitor cell | 8.63e-43 | 66 |
granulocyte monocyte progenitor cell | 3.90e-42 | 67 |
myeloid leukocyte | 3.94e-39 | 72 |
myeloid cell | 1.29e-25 | 108 |
common myeloid progenitor | 1.29e-25 | 108 |
nongranular leukocyte | 5.87e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 6.86e-23 | 120 |
leukocyte | 5.37e-20 | 136 |
hematopoietic oligopotent progenitor cell | 1.30e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.30e-16 | 161 |
hematopoietic stem cell | 7.66e-16 | 168 |
hematopoietic cell | 6.10e-15 | 177 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 2.59e-07 | 361 |
keratocyte | 5.60e-07 | 2 |
migratory cranial neural crest cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.23e-37 | 76 |
bone element | 3.32e-34 | 82 |
skeletal element | 4.84e-31 | 90 |
immune system | 5.41e-30 | 93 |
hematopoietic system | 2.18e-28 | 98 |
blood island | 2.18e-28 | 98 |
skeletal system | 8.66e-28 | 100 |
hemolymphoid system | 1.29e-25 | 108 |
musculoskeletal system | 6.00e-16 | 167 |
lateral plate mesoderm | 8.84e-13 | 203 |
mesoderm | 1.70e-07 | 315 |
mesoderm-derived structure | 1.70e-07 | 315 |
presumptive mesoderm | 1.70e-07 | 315 |
connective tissue | 4.69e-07 | 371 |
head connective tissue | 5.60e-07 | 2 |
substantia propria of cornea | 5.60e-07 | 2 |