FF:11307-117C2: Difference between revisions

Latest revision as of 16:32, 3 June 2020

Name:	CD8+ T Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11956,SRhi10010.CTTGTA
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	57 years old adult
sex	male
age	57
cell type	t cell, CD8+
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	CD8T726
catalog number	3H100-26-10
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005210

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11956		CAGE		DRX008196		DRR009068

Accession ID Hg19

Library id		BAM		CTSS
CNhs11956		DRZ000493		DRZ001878

Accession ID Hg38

Library id		BAM		CTSS
CNhs11956		DRZ011843		DRZ013228

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00013692

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10010.CTTGTA		sRNA-Seq		DRX012364		DRR013812

Accession ID Hg19

Library id		BAM		CTSS
SRhi10010.CTTGTA		DRZ003013

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.186
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0559
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0922
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.259
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.886
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.89
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.186
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.624
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.744
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.836
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.6
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.103
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.515
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.203
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.103
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.217
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.51
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.821
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.813
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.676
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.157
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.497
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.369
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0508
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.496
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.846
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.786
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.744
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0194
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.458
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.369
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.812
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.852
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.699
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.145
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.87
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.803
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.73
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.103
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.723
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11956

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.74238e-4
MA0003.1	MA0003.1	0.335
MA0004.1	MA0004.1	0.813
MA0006.1	MA0006.1	0.333
MA0007.1	MA0007.1	0.377
MA0009.1	MA0009.1	0.0289
MA0014.1	MA0014.1	0.647
MA0017.1	MA0017.1	0.0966
MA0018.2	MA0018.2	6.87486e-9
MA0019.1	MA0019.1	0.718
MA0024.1	MA0024.1	0.685
MA0025.1	MA0025.1	0.268
MA0027.1	MA0027.1	0.667
MA0028.1	MA0028.1	0.153
MA0029.1	MA0029.1	0.617
MA0030.1	MA0030.1	0.0203
MA0031.1	MA0031.1	3.20367e-5
MA0035.2	MA0035.2	0.406
MA0038.1	MA0038.1	0.016
MA0039.2	MA0039.2	0.195
MA0040.1	MA0040.1	0.609
MA0041.1	MA0041.1	0.225
MA0042.1	MA0042.1	0.594
MA0043.1	MA0043.1	0.00373
MA0046.1	MA0046.1	0.0339
MA0047.2	MA0047.2	0.67
MA0048.1	MA0048.1	0.64
MA0050.1	MA0050.1	2.60542e-5
MA0051.1	MA0051.1	0.0907
MA0052.1	MA0052.1	0.0289
MA0055.1	MA0055.1	0.583
MA0057.1	MA0057.1	0.205
MA0058.1	MA0058.1	0.746
MA0059.1	MA0059.1	0.783
MA0060.1	MA0060.1	0.0187
MA0061.1	MA0061.1	1.36991e-10
MA0062.2	MA0062.2	1.45051e-7
MA0065.2	MA0065.2	0.881
MA0066.1	MA0066.1	0.661
MA0067.1	MA0067.1	0.00378
MA0068.1	MA0068.1	0.9
MA0069.1	MA0069.1	0.616
MA0070.1	MA0070.1	0.413
MA0071.1	MA0071.1	0.772
MA0072.1	MA0072.1	0.0797
MA0073.1	MA0073.1	0.531
MA0074.1	MA0074.1	0.963
MA0076.1	MA0076.1	0.0822
MA0077.1	MA0077.1	0.0899
MA0078.1	MA0078.1	0.974
MA0079.2	MA0079.2	0.773
MA0080.2	MA0080.2	2.18565e-8
MA0081.1	MA0081.1	0.0425
MA0083.1	MA0083.1	0.314
MA0084.1	MA0084.1	0.244
MA0087.1	MA0087.1	0.548
MA0088.1	MA0088.1	0.197
MA0090.1	MA0090.1	2.68744e-4
MA0091.1	MA0091.1	0.279
MA0092.1	MA0092.1	0.825
MA0093.1	MA0093.1	0.713
MA0099.2	MA0099.2	0.634
MA0100.1	MA0100.1	0.905
MA0101.1	MA0101.1	8.27359e-7
MA0102.2	MA0102.2	0.74
MA0103.1	MA0103.1	0.937
MA0104.2	MA0104.2	0.715
MA0105.1	MA0105.1	4.37854e-8
MA0106.1	MA0106.1	0.0722
MA0107.1	MA0107.1	2.31565e-6
MA0108.2	MA0108.2	1.03725e-4
MA0111.1	MA0111.1	0.408
MA0112.2	MA0112.2	0.288
MA0113.1	MA0113.1	0.487
MA0114.1	MA0114.1	0.18
MA0115.1	MA0115.1	0.244
MA0116.1	MA0116.1	0.114
MA0117.1	MA0117.1	0.0137
MA0119.1	MA0119.1	0.268
MA0122.1	MA0122.1	0.706
MA0124.1	MA0124.1	0.0688
MA0125.1	MA0125.1	0.068
MA0131.1	MA0131.1	0.0812
MA0135.1	MA0135.1	0.178
MA0136.1	MA0136.1	9.32993e-12
MA0137.2	MA0137.2	0.0313
MA0138.2	MA0138.2	0.0593
MA0139.1	MA0139.1	0.841
MA0140.1	MA0140.1	0.672
MA0141.1	MA0141.1	0.186
MA0142.1	MA0142.1	0.124
MA0143.1	MA0143.1	0.206
MA0144.1	MA0144.1	0.192
MA0145.1	MA0145.1	0.0234
MA0146.1	MA0146.1	0.767
MA0147.1	MA0147.1	0.638
MA0148.1	MA0148.1	1
MA0149.1	MA0149.1	0.61
MA0150.1	MA0150.1	0.286
MA0152.1	MA0152.1	0.00132
MA0153.1	MA0153.1	0.144
MA0154.1	MA0154.1	0.779
MA0155.1	MA0155.1	0.182
MA0156.1	MA0156.1	2.59997e-7
MA0157.1	MA0157.1	0.00238
MA0159.1	MA0159.1	0.989
MA0160.1	MA0160.1	0.651
MA0162.1	MA0162.1	0.355
MA0163.1	MA0163.1	0.0205
MA0164.1	MA0164.1	0.592
MA0258.1	MA0258.1	0.964
MA0259.1	MA0259.1	0.767

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11956

Novel motif	Logo	P-value
1	1	0.954
10	10	0.00619
100	100	0.735
101	101	0.186
102	102	0.774
103	103	0.28
104	104	0.929
105	105	0.91
106	106	0.124
107	107	0.0632
108	108	0.749
109	109	0.986
11	11	0.74
110	110	0.36
111	111	0.476
112	112	0.802
113	113	0.26
114	114	0.701
115	115	0.566
116	116	0.192
117	117	0.0079
118	118	0.537
119	119	0.585
12	12	0.78
120	120	0.253
121	121	0.601
122	122	0.727
123	123	3.68154e-6
124	124	0.972
125	125	0.901
126	126	0.702
127	127	0.397
128	128	0.772
129	129	0.155
13	13	0.672
130	130	0.146
131	131	0.228
132	132	0.284
133	133	0.816
134	134	0.676
135	135	0.185
136	136	0.739
137	137	0.0626
138	138	0.69
139	139	0.102
14	14	0.492
140	140	0.799
141	141	0.948
142	142	0.326
143	143	0.0338
144	144	0.997
145	145	0.499
146	146	0.361
147	147	0.0418
148	148	0.259
149	149	0.216
15	15	0.456
150	150	0.828
151	151	0.496
152	152	0.917
153	153	0.404
154	154	0.0813
155	155	0.0925
156	156	0.909
157	157	0.726
158	158	0.0109
159	159	0.881
16	16	0.229
160	160	0.0671
161	161	0.676
162	162	0.0589
163	163	0.651
164	164	0.055
165	165	0.866
166	166	0.544
167	167	0.121
168	168	0.41
169	169	0.282
17	17	0.548
18	18	0.762
19	19	0.0616
2	2	0.188
20	20	0.142
21	21	0.999
22	22	0.146
23	23	0.732
24	24	0.379
25	25	0.238
26	26	0.996
27	27	0.461
28	28	0.308
29	29	0.0953
3	3	0.588
30	30	0.0358
31	31	0.564
32	32	0.0373
33	33	0.593
34	34	0.251
35	35	0.342
36	36	0.187
37	37	0.359
38	38	0.598
39	39	0.509
4	4	0.8
40	40	0.803
41	41	0.237
42	42	0.4
43	43	0.618
44	44	0.605
45	45	0.101
46	46	0.912
47	47	0.763
48	48	0.941
49	49	0.185
5	5	0.832
50	50	0.435
51	51	0.977
52	52	0.958
53	53	0.243
54	54	0.945
55	55	0.847
56	56	0.726
57	57	0.977
58	58	0.21
59	59	0.219
6	6	0.909
60	60	0.607
61	61	0.282
62	62	0.369
63	63	0.827
64	64	0.986
65	65	0.534
66	66	0.318
67	67	0.475
68	68	0.851
69	69	0.873
7	7	0.842
70	70	0.2
71	71	0.265
72	72	0.594
73	73	0.498
74	74	0.545
75	75	0.0558
76	76	0.0946
77	77	0.00272
78	78	0.724
79	79	0.586
8	8	0.302
80	80	0.173
81	81	0.906
82	82	0.667
83	83	0.782
84	84	0.115
85	85	0.665
86	86	0.0384
87	87	0.957
88	88	0.947
89	89	0.00157
9	9	0.579
90	90	0.664
91	91	0.791
92	92	0.909
93	93	0.958
94	94	0.325
95	95	0.203
96	96	0.792
97	97	0.214
98	98	0.529
99	99	8.09635e-6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11956

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
+|DRA_sample_Accession=CAGE@SAMD00005210
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000625,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000827,CL:0000837,CL:0000838,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013692
+|accession_numbers=CAGE;DRX008196;DRR009068;DRZ000493;DRZ001878;DRZ011843;DRZ013228
+|accession_numbers_RNASeq=sRNA-Seq;DRX012364;DRR013812;DRZ003013
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000030
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.51!583.55!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.16!193.63!STAT4;;chr2:157189180..157189290,-!p1@NR4A2!2.12!638.65!NR4A2;;chr19:45971246..45971265,+!p1@FOSB!2.10!2160.38!FOSB;;chr17:45810594..45810608,+!p1@TBX21!2.07!117.14!TBX21;;chr20:50159198..50159299,-!p1@NFATC2!2.01!143.88!NFATC2;;chr1:26697243..26697258,-!p1@ZNF683!1.99!97.35!ZNF683;;chr9:102584262..102584276,+!p1@NR4A3!1.98!204.32!NR4A3;;chr10:8096631..8096660,+!p1@GATA3!1.97!111.26!GATA3;;chr9:117150254..117150271,-!p1@AKNA!1.93!220.37!AKNA;;chr19:54058073..54058088,+!p1@ZNF331!1.88!75.15!ZNF331;;chr10:8096772..8096787,+!p2@GATA3!1.87!85.31!GATA3;;chr14:75745523..75745537,+!p1@FOS!1.85!7735.44!FOS;;chr14:75746722..75746777,+!p2@FOS!1.82!81.84!FOS;;chr19:54041669..54041697,+!p2@ZNF331!1.82!65.79!ZNF331;;chr15:60884706..60884743,-!p1@RORA!1.80!301.94!RORA;;chr7:50343634..50343717,+!p2@IKZF1!1.78!59.10!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.71!50.81!SP140;;chrX:106960285..106960299,-!p1@TSC22D3!1.68!1170.59!TSC22D3;;chr17:38020392..38020477,-!p1@IKZF3!1.68!47.07!IKZF3;;chr5:133450365..133450444,+!p1@TCF7!1.65!188.81!TCF7;;chr20:56195474..56195506,-!p1@ZBP1!1.65!43.86!ZBP1;;chr3:39195075..39195088,-!p1@CSRNP1!1.64!257.54!CSRNP1;;chr2:145271342..145271377,-!p5@ZEB2!1.64!43.06!ZEB2;;chr2:192015677..192015691,-!p3@STAT4!1.64!42.52!STAT4;;chr18:46475696..46475713,-!p1@SMAD7!1.63!46.53!SMAD7;;chr6:106546808..106546833,+!p3@PRDM1!1.62!50.81!PRDM1;;chr1:26697189..26697205,-!p2@ZNF683!1.62!40.92!ZNF683;;chr9:3525727..3525828,-!p2@RFX3!1.61!97.62!RFX3;;chr9:102584241..102584261,+!p4@NR4A3!1.61!61.24!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!1.60!51.35!THAP2;;chr3:27763807..27763822,-!p1@EOMES!1.60!38.78!EOMES;;chr10:35484053..35484076,+!p1@CREM!1.59!92.00!CREM;;chr8:123793988..123794016,+!p1@ZHX2!1.58!64.19!ZHX2;;chrY:21906594..21906622,-!p1@KDM5D!1.58!36.91!KDM5D;;chr19:19729477..19729542,-!p1@PBX4!1.57!74.62!PBX4;;chr19:16435625..16435682,+!p1@KLF2!1.55!1048.90!KLF2;;chr1:59249688..59249703,-!p3@JUN!1.55!197.64!JUN;;chr3:63953435..63953499,+!p1@ATXN7!1.55!34.23!ATXN7;;chr2:61108878..61108891,+!p5@REL!1.54!33.43!REL;;chr10:3824332..3824425,-!p4@KLF6!1.52!50.55!KLF6;;chr14:64971288..64971316,-!p2@ZBTB25!1.51!94.94!ZBTB25;;chr9:102584128..102584144,+!p3@NR4A3!1.50!57.77!NR4A3;;chr1:25291475..25291511,-!p2@RUNX3!1.49!30.22!RUNX3;;chr3:5020939..5020952,+!p2@BHLHE40!1.46!84.24!BHLHE40;;chrX:106960221..106960236,-!p3@TSC22D3!1.46!74.62!TSC22D3;;chr2:192015750..192015793,-!p2@STAT4!1.45!36.64!STAT4;;chr2:43453734..43453751,-!p1@ZFP36L2!1.44!2696.60!ZFP36L2;;chr1:59249707..59249727,-!p1@JUN!1.43!1047.30!JUN;;chr3:23986824..23986848,+!p2@NR1D2!1.43!139.07!NR1D2;;chr7:104654690..104654704,+!p2@MLL5!1.43!51.08!MLL5;;chr4:103422499..103422632,+!p1@NFKB1!1.42!503.86!NFKB1;;chr6:91006518..91006570,-!p1@BACH2!1.42!57.50!BACH2;;chr7:104654718..104654741,+!p3@MLL5!1.42!36.64!MLL5;;chr4:57522166..57522260,-!p2@HOPX!1.42!28.88!HOPX;;chr2:231090471..231090504,+!p2@SP140!1.42!25.41!SP140;;chr4:57522674..57522699,-!p5@HOPX!1.42!25.14!HOPX;;chr14:35873947..35873965,-!p1@NFKBIA!1.41!1497.67!NFKBIA;;chrX:106960180..106960197,-!p2@TSC22D3!1.41!91.20!TSC22D3;;chr8:67525443..67525459,-!p2@MYBL1!1.40!35.57!MYBL1;;chr9:102584278..102584285,+!p5@NR4A3!1.40!24.34!NR4A3;;chr5:133451294..133451310,+!p2@TCF7!1.39!23.53!TCF7;;chr2:61108695..61108753,+!p1@REL!1.38!152.44!REL;;chr17:37934365..37934387,-!p2@IKZF3!1.38!23.00!IKZF3;;chr19:54041645..54041661,+!p5@ZNF331!1.38!23.00!ZNF331;;chr12:51158359..51158395,+!p4@ATF1!1.38!22.73!ATF1;;chr5:131826457..131826514,-!p1@IRF1!1.37!839.49!IRF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.37!54.02!NFKBIA;;chr13:74707894..74707947,-!p6@KLF12!1.37!25.14!KLF12;;chr7:50343895..50343936,+!p5@IKZF1!1.37!22.46!IKZF1;;chr6:391743..391759,+!p1@IRF4!1.37!22.20!IRF4;;chr17:38497662..38497713,+!p4@RARA!1.35!24.60!RARA;;chr2:61108808..61108821,+!p3@REL!1.34!26.48!REL;;chr2:97202480..97202499,+!p1@ARID5A!1.31!189.88!ARID5A;;chr2:208394817..208394834,+!p3@CREB1!1.31!76.49!CREB1;;chr20:44600199..44600219,-!p3@ZNF335!1.28!24.07!ZNF335;;chr8:81397820..81397836,+!p2@ZBTB10!1.28!22.46!ZBTB10;;chr1:37940170..37940190,+!p1@ZC3H12A!1.27!210.74!ZC3H12A;;chr12:72056773..72056796,+!p3@THAP2!1.27!23.00!THAP2;;chr6:106546834..106546850,+!p4@PRDM1!1.26!17.38!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!1.25!3755.13!JUNB;;chr11:67007548..67007610,+!p3@KDM2A!1.25!121.69!KDM2A;;chr10:35416142..35416169,+!p3@CREM!1.25!44.40!CREM;;chr3:39195037..39195069,-!p2@CSRNP1!1.24!101.09!CSRNP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.24!20.59!ZBTB10;;chr1:25256175..25256228,-!p5@RUNX3!1.24!16.31!RUNX3;;chr1:10754477..10754517,-!p1@CASZ1!1.23!26.48!CASZ1;;chr16:89789271..89789291,+!p5@ZNF276!1.23!16.05!ZNF276;;chr4:38665769..38665801,+!p2@KLF3!1.22!139.60!KLF3;;chr3:39195139..39195150,-!p3@CSRNP1!1.22!19.79!CSRNP1;;chr2:157186630..157186686,-!p6@NR4A2!1.22!15.51!NR4A2;;chr14:35874077..35874091,-!p8@NFKBIA!1.22!15.51!NFKBIA;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11307-117C2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000030;;FF:0000210
+|is_a=EFO:0002091;;FF:0000030;;FF:0000210
+|is_obsolete=
+|library_id=CNhs11956!SRhi10010.CTTGTA
+|library_id_phase_based=2:CNhs11956
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11307
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CTTGTA.11307
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11307
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CTTGTA.11307
 |name=CD8+ T Cells, donor2
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11956,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10010,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=117
 |rna_catalog_number=3H100-26-10
@@ Line 56: / Line 82: @@
 |rna_tube_id=117C2
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10010.CTTGTA
 |sample_age=57
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=C
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.64020855292434e-224!GO:0043227;membrane-bound organelle;4.70238079668749e-199!GO:0043231;intracellular membrane-bound organelle;1.27210461194443e-198!GO:0043226;organelle;8.79640496504352e-187!GO:0043229;intracellular organelle;5.5016790867684e-186!GO:0005737;cytoplasm;2.52373600748233e-123!GO:0005634;nucleus;2.46690062296215e-119!GO:0044422;organelle part;1.39467675010548e-110!GO:0044446;intracellular organelle part;8.18592936331873e-109!GO:0043170;macromolecule metabolic process;7.70206470824136e-106!GO:0044237;cellular metabolic process;5.45019859623532e-97!GO:0044238;primary metabolic process;3.02980174954691e-96!GO:0032991;macromolecular complex;1.74758080687844e-83!GO:0044428;nuclear part;7.52067798699264e-83!GO:0043283;biopolymer metabolic process;8.23911847420227e-82!GO:0003723;RNA binding;1.75399581431086e-77!GO:0044444;cytoplasmic part;2.92346336195511e-77!GO:0030529;ribonucleoprotein complex;2.6903182388565e-71!GO:0010467;gene expression;4.58738938090349e-66!GO:0005515;protein binding;1.33222280714735e-65!GO:0043233;organelle lumen;3.79941104677751e-65!GO:0031974;membrane-enclosed lumen;3.79941104677751e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.39988155151377e-61!GO:0031981;nuclear lumen;1.13998545084331e-53!GO:0019538;protein metabolic process;9.94356061165732e-50!GO:0006396;RNA processing;1.2994908374287e-49!GO:0003676;nucleic acid binding;3.16008308803478e-48!GO:0044267;cellular protein metabolic process;1.30349442260998e-47!GO:0044260;cellular macromolecule metabolic process;1.07594576614019e-46!GO:0033036;macromolecule localization;3.55902395045389e-45!GO:0016071;mRNA metabolic process;1.1380249047396e-44!GO:0015031;protein transport;6.73715918554175e-43!GO:0043234;protein complex;9.1648053055214e-42!GO:0006412;translation;2.41996795915119e-41!GO:0045184;establishment of protein localization;2.52494948889085e-41!GO:0016070;RNA metabolic process;3.90145746517622e-41!GO:0008104;protein localization;5.127737679378e-41!GO:0008380;RNA splicing;2.71320843874858e-38!GO:0006397;mRNA processing;2.06314034820192e-37!GO:0031090;organelle membrane;7.50478787910433e-36!GO:0005840;ribosome;2.54098714145611e-35!GO:0005739;mitochondrion;6.25352008334154e-35!GO:0005654;nucleoplasm;1.16103793006828e-34!GO:0016043;cellular component organization and biogenesis;4.95339636667999e-33!GO:0046907;intracellular transport;6.24382872160101e-33!GO:0006259;DNA metabolic process;4.62607038239606e-32!GO:0009059;macromolecule biosynthetic process;7.32416301499296e-32!GO:0003735;structural constituent of ribosome;1.28565215519341e-31!GO:0031967;organelle envelope;5.81197022599643e-31!GO:0031975;envelope;1.18837469243953e-30!GO:0000166;nucleotide binding;3.27083434169123e-30!GO:0006886;intracellular protein transport;4.80738208739115e-30!GO:0005829;cytosol;2.87846716267485e-29!GO:0005681;spliceosome;6.25465770405342e-29!GO:0033279;ribosomal subunit;7.21618711529248e-29!GO:0006512;ubiquitin cycle;8.5560216527494e-29!GO:0044451;nucleoplasm part;1.18684003627329e-28!GO:0065003;macromolecular complex assembly;6.56972250063549e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.03066206089282e-26!GO:0044429;mitochondrial part;3.38185620958789e-26!GO:0006996;organelle organization and biogenesis;6.63165802652297e-26!GO:0043412;biopolymer modification;1.95165479472641e-25!GO:0022607;cellular component assembly;2.9093007803103e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.15531269556796e-25!GO:0009058;biosynthetic process;2.57398691453863e-23!GO:0051641;cellular localization;7.67467062801559e-23!GO:0051649;establishment of cellular localization;1.02639465035468e-22!GO:0006464;protein modification process;1.07071482194517e-22!GO:0012501;programmed cell death;1.18907075890894e-22!GO:0044445;cytosolic part;1.43295564469078e-22!GO:0044249;cellular biosynthetic process;2.00110089343764e-22!GO:0006915;apoptosis;2.13799284549521e-22!GO:0043687;post-translational protein modification;2.93934700389412e-22!GO:0032553;ribonucleotide binding;5.29006671615329e-22!GO:0032555;purine ribonucleotide binding;5.29006671615329e-22!GO:0008219;cell death;5.34703855528487e-22!GO:0016265;death;5.34703855528487e-22!GO:0008134;transcription factor binding;7.96651049571862e-22!GO:0050794;regulation of cellular process;2.55818046069814e-21!GO:0017111;nucleoside-triphosphatase activity;6.23820867410685e-21!GO:0017076;purine nucleotide binding;1.06529610564621e-20!GO:0019941;modification-dependent protein catabolic process;2.18993243307937e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.18993243307937e-20!GO:0016462;pyrophosphatase activity;2.52518461475443e-20!GO:0006511;ubiquitin-dependent protein catabolic process;2.53911208445315e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.66745256167693e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66745256167693e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.38125497465959e-20!GO:0044257;cellular protein catabolic process;8.91466260414574e-20!GO:0016874;ligase activity;1.89399229237112e-19!GO:0005730;nucleolus;6.15325514417443e-19!GO:0044265;cellular macromolecule catabolic process;6.89674153783255e-19!GO:0006605;protein targeting;2.36044169026355e-18!GO:0016604;nuclear body;2.36044169026355e-18!GO:0005524;ATP binding;3.58220484352706e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;6.03004817905324e-18!GO:0032559;adenyl ribonucleotide binding;8.35257034695977e-18!GO:0006913;nucleocytoplasmic transport;9.5494409172981e-18!GO:0019222;regulation of metabolic process;1.28411968853981e-17!GO:0051276;chromosome organization and biogenesis;1.50423749052413e-17!GO:0005740;mitochondrial envelope;1.80008158508918e-17!GO:0051169;nuclear transport;1.92287018260213e-17!GO:0043228;non-membrane-bound organelle;1.99108845453964e-17!GO:0043232;intracellular non-membrane-bound organelle;1.99108845453964e-17!GO:0031966;mitochondrial membrane;3.42983617338733e-17!GO:0007049;cell cycle;3.72189042112601e-17!GO:0006323;DNA packaging;3.78976216741137e-17!GO:0043285;biopolymer catabolic process;6.9798026063217e-17!GO:0022618;protein-RNA complex assembly;9.84248120141288e-17!GO:0030554;adenyl nucleotide binding;2.29703761574319e-16!GO:0019866;organelle inner membrane;3.58498570867494e-16!GO:0042981;regulation of apoptosis;1.00418985821623e-15!GO:0043067;regulation of programmed cell death;1.20618329782361e-15!GO:0012505;endomembrane system;1.61212474159326e-15!GO:0016607;nuclear speck;2.15388973148611e-15!GO:0008135;translation factor activity, nucleic acid binding;3.45669243108312e-15!GO:0006974;response to DNA damage stimulus;3.6103940548206e-15!GO:0050789;regulation of biological process;3.88072004900982e-15!GO:0006119;oxidative phosphorylation;4.92281862687197e-15!GO:0015934;large ribosomal subunit;4.92281862687197e-15!GO:0031323;regulation of cellular metabolic process;5.41633417632628e-15!GO:0006350;transcription;5.71948866703589e-15!GO:0015935;small ribosomal subunit;7.8071391969367e-15!GO:0042623;ATPase activity, coupled;1.55946183205656e-14!GO:0031965;nuclear membrane;1.6196527766563e-14!GO:0005635;nuclear envelope;1.67891350982966e-14!GO:0016887;ATPase activity;1.67891350982966e-14!GO:0030163;protein catabolic process;2.3135123563258e-14!GO:0009057;macromolecule catabolic process;4.33426274867971e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.63203051852262e-14!GO:0005743;mitochondrial inner membrane;1.12800940949233e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.81776787925943e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.95020359147416e-13!GO:0000375;RNA splicing, via transesterification reactions;1.95020359147416e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.95020359147416e-13!GO:0016568;chromatin modification;2.02737151171182e-13!GO:0003712;transcription cofactor activity;3.30956316340551e-13!GO:0004386;helicase activity;6.33468941797001e-13!GO:0006366;transcription from RNA polymerase II promoter;6.34521310797694e-13!GO:0017038;protein import;7.20612249326397e-13!GO:0010468;regulation of gene expression;8.6780296463571e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.92568570712103e-13!GO:0044453;nuclear membrane part;1.51160893530474e-12!GO:0006281;DNA repair;2.1187154240855e-12!GO:0044455;mitochondrial membrane part;3.79322738815351e-12!GO:0006793;phosphorus metabolic process;3.8476645086491e-12!GO:0006796;phosphate metabolic process;3.8476645086491e-12!GO:0008639;small protein conjugating enzyme activity;4.45740051063331e-12!GO:0022402;cell cycle process;4.93645180178264e-12!GO:0032774;RNA biosynthetic process;5.09234696892471e-12!GO:0006351;transcription, DNA-dependent;5.45630823816319e-12!GO:0006457;protein folding;5.68849947171834e-12!GO:0004842;ubiquitin-protein ligase activity;5.78928327614583e-12!GO:0051726;regulation of cell cycle;8.83522861421793e-12!GO:0008026;ATP-dependent helicase activity;1.17187734863926e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.36816672248173e-11!GO:0000074;regulation of progression through cell cycle;1.89057090461846e-11!GO:0005694;chromosome;2.5886523640463e-11!GO:0006333;chromatin assembly or disassembly;2.5886523640463e-11!GO:0003743;translation initiation factor activity;3.05557980125373e-11!GO:0065004;protein-DNA complex assembly;3.07102530353466e-11!GO:0048770;pigment granule;3.09209664814192e-11!GO:0042470;melanosome;3.09209664814192e-11!GO:0005794;Golgi apparatus;3.14713666984513e-11!GO:0019787;small conjugating protein ligase activity;3.35718308455101e-11!GO:0045449;regulation of transcription;3.42370813476008e-11!GO:0048523;negative regulation of cellular process;3.45175976476826e-11!GO:0031980;mitochondrial lumen;8.87743611472829e-11!GO:0005759;mitochondrial matrix;8.87743611472829e-11!GO:0016310;phosphorylation;1.22783777742292e-10!GO:0048193;Golgi vesicle transport;1.2545799340675e-10!GO:0050657;nucleic acid transport;1.25615766176566e-10!GO:0051236;establishment of RNA localization;1.25615766176566e-10!GO:0050658;RNA transport;1.25615766176566e-10!GO:0006403;RNA localization;1.44892763979794e-10!GO:0005746;mitochondrial respiratory chain;1.44892763979794e-10!GO:0005643;nuclear pore;1.4726299320183e-10!GO:0006413;translational initiation;1.67160347722144e-10!GO:0044248;cellular catabolic process;1.75965558867123e-10!GO:0006606;protein import into nucleus;2.33637443029664e-10!GO:0051170;nuclear import;2.42124757965343e-10!GO:0007243;protein kinase cascade;2.51414399146558e-10!GO:0006446;regulation of translational initiation;4.48499127920971e-10!GO:0009719;response to endogenous stimulus;4.81298621630042e-10!GO:0065007;biological regulation;4.95365049023168e-10!GO:0008270;zinc ion binding;7.36765716009419e-10!GO:0031324;negative regulation of cellular metabolic process;7.72516534448321e-10!GO:0006355;regulation of transcription, DNA-dependent;8.05165823405354e-10!GO:0048519;negative regulation of biological process;1.01977339360357e-09!GO:0044427;chromosomal part;1.17122547025301e-09!GO:0051082;unfolded protein binding;1.23820800257799e-09!GO:0016564;transcription repressor activity;1.25079760978428e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.26048089292463e-09!GO:0003954;NADH dehydrogenase activity;1.26048089292463e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.26048089292463e-09!GO:0042254;ribosome biogenesis and assembly;2.00758875361383e-09!GO:0005768;endosome;2.76278541195961e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.23329571608595e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.61171141628502e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.39539593676699e-09!GO:0051028;mRNA transport;7.91014121498846e-09!GO:0016881;acid-amino acid ligase activity;8.07255265733255e-09!GO:0000785;chromatin;8.197067599264e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.45159622932821e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.19679783998365e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.24832669898598e-08!GO:0042773;ATP synthesis coupled electron transport;1.24832669898598e-08!GO:0009892;negative regulation of metabolic process;1.35259306289249e-08!GO:0046930;pore complex;1.355980230647e-08!GO:0043566;structure-specific DNA binding;1.54093318952846e-08!GO:0016481;negative regulation of transcription;1.97745952467676e-08!GO:0016563;transcription activator activity;2.02349229244635e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.17898776059596e-08!GO:0003677;DNA binding;2.30109900954879e-08!GO:0007242;intracellular signaling cascade;2.6552601847051e-08!GO:0045786;negative regulation of progression through cell cycle;2.66537171408206e-08!GO:0043065;positive regulation of apoptosis;2.7343550093e-08!GO:0032446;protein modification by small protein conjugation;2.81663247871978e-08!GO:0030964;NADH dehydrogenase complex (quinone);2.98447381181914e-08!GO:0045271;respiratory chain complex I;2.98447381181914e-08!GO:0005747;mitochondrial respiratory chain complex I;2.98447381181914e-08!GO:0065009;regulation of a molecular function;3.51840905982319e-08!GO:0006917;induction of apoptosis;3.68544705200878e-08!GO:0003713;transcription coactivator activity;3.69899273745281e-08!GO:0043068;positive regulation of programmed cell death;3.90146460850137e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.3923856348952e-08!GO:0019829;cation-transporting ATPase activity;4.58928372776711e-08!GO:0065002;intracellular protein transport across a membrane;4.72334565558278e-08!GO:0016567;protein ubiquitination;4.79009341530838e-08!GO:0012502;induction of programmed cell death;6.21446665751257e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.49957164922275e-08!GO:0019899;enzyme binding;6.49957164922275e-08!GO:0003697;single-stranded DNA binding;6.93487520417196e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.21818629773728e-08!GO:0016192;vesicle-mediated transport;8.60478733905508e-08!GO:0016740;transferase activity;1.13200193548295e-07!GO:0044432;endoplasmic reticulum part;1.19134287967722e-07!GO:0008565;protein transporter activity;2.29466676727868e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.38441015835099e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.06971467024808e-07!GO:0051246;regulation of protein metabolic process;3.14929929726168e-07!GO:0004674;protein serine/threonine kinase activity;3.36933008941538e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.46022579710474e-07!GO:0031497;chromatin assembly;3.56875293532459e-07!GO:0043069;negative regulation of programmed cell death;4.89798280370892e-07!GO:0000151;ubiquitin ligase complex;5.3797069086759e-07!GO:0016072;rRNA metabolic process;5.39702462721091e-07!GO:0006334;nucleosome assembly;6.13740186761235e-07!GO:0006364;rRNA processing;6.5799967308994e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.7077611005181e-07!GO:0043066;negative regulation of apoptosis;8.80065035145439e-07!GO:0005783;endoplasmic reticulum;9.30670233690742e-07!GO:0016787;hydrolase activity;9.72231251563787e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.97205614351347e-07!GO:0046914;transition metal ion binding;1.22429926986444e-06!GO:0051168;nuclear export;1.22728727624213e-06!GO:0006916;anti-apoptosis;1.41544819803495e-06!GO:0006260;DNA replication;1.46955013933644e-06!GO:0000278;mitotic cell cycle;1.66328348144488e-06!GO:0005789;endoplasmic reticulum membrane;1.66851670459774e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.7847225340304e-06!GO:0006399;tRNA metabolic process;1.8184934664806e-06!GO:0003724;RNA helicase activity;2.7332974283272e-06!GO:0051186;cofactor metabolic process;3.96411005165807e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.43418589143109e-06!GO:0015399;primary active transmembrane transporter activity;4.43418589143109e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.13094509490347e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.39210815870408e-06!GO:0003714;transcription corepressor activity;5.39708069616795e-06!GO:0009259;ribonucleotide metabolic process;5.58513142779737e-06!GO:0015986;ATP synthesis coupled proton transport;5.62854269268684e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.62854269268684e-06!GO:0005525;GTP binding;5.76572825386904e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.84556762080626e-06!GO:0000245;spliceosome assembly;6.56171435799792e-06!GO:0009260;ribonucleotide biosynthetic process;8.31714231926504e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.5890892607236e-06!GO:0003924;GTPase activity;9.15956628789252e-06!GO:0005761;mitochondrial ribosome;9.15956628789252e-06!GO:0000313;organellar ribosome;9.15956628789252e-06!GO:0005793;ER-Golgi intermediate compartment;9.52180334329122e-06!GO:0006461;protein complex assembly;1.00330985323064e-05!GO:0006402;mRNA catabolic process;1.04514673908914e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.05755299575508e-05!GO:0060090;molecular adaptor activity;1.1403259399756e-05!GO:0009060;aerobic respiration;1.32506327334923e-05!GO:0044440;endosomal part;1.34267963570726e-05!GO:0010008;endosome membrane;1.34267963570726e-05!GO:0016363;nuclear matrix;1.38263075290971e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.40568849873941e-05!GO:0007264;small GTPase mediated signal transduction;1.43928332333661e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.55090442055723e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.56012077778036e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.56012077778036e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.56012077778036e-05!GO:0005813;centrosome;1.87201949631764e-05!GO:0008632;apoptotic program;2.01005977409841e-05!GO:0006164;purine nucleotide biosynthetic process;2.0922478178204e-05!GO:0009150;purine ribonucleotide metabolic process;2.36387432752559e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.51500436265133e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51500436265133e-05!GO:0006754;ATP biosynthetic process;2.66640573628896e-05!GO:0006753;nucleoside phosphate metabolic process;2.66640573628896e-05!GO:0048522;positive regulation of cellular process;2.73971924009965e-05!GO:0044431;Golgi apparatus part;2.75990410349732e-05!GO:0016779;nucleotidyltransferase activity;2.78051358858535e-05!GO:0006163;purine nucleotide metabolic process;2.87528398666793e-05!GO:0006401;RNA catabolic process;3.05205473014021e-05!GO:0004298;threonine endopeptidase activity;3.2954031484173e-05!GO:0006732;coenzyme metabolic process;3.34569992651537e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.5288947709621e-05!GO:0008234;cysteine-type peptidase activity;3.65206651426768e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.73102049967047e-05!GO:0005667;transcription factor complex;3.89123055758371e-05!GO:0050790;regulation of catalytic activity;4.22808602791299e-05!GO:0043038;amino acid activation;4.23643968795866e-05!GO:0006418;tRNA aminoacylation for protein translation;4.23643968795866e-05!GO:0043039;tRNA aminoacylation;4.23643968795866e-05!GO:0008186;RNA-dependent ATPase activity;4.51869265248438e-05!GO:0048475;coated membrane;4.53313817197706e-05!GO:0030117;membrane coat;4.53313817197706e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.5986196694176e-05!GO:0009056;catabolic process;4.84741933383963e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.84741933383963e-05!GO:0007265;Ras protein signal transduction;4.88436006019316e-05!GO:0030120;vesicle coat;4.99375911874977e-05!GO:0030662;coated vesicle membrane;4.99375911874977e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.17933345596119e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.17933345596119e-05!GO:0045892;negative regulation of transcription, DNA-dependent;5.30068400724447e-05!GO:0006352;transcription initiation;5.48168062704573e-05!GO:0005770;late endosome;5.64901282810615e-05!GO:0009199;ribonucleoside triphosphate metabolic process;6.41894786901625e-05!GO:0005815;microtubule organizing center;6.94144291084484e-05!GO:0003729;mRNA binding;7.05265691316098e-05!GO:0045259;proton-transporting ATP synthase complex;7.44059499938083e-05!GO:0007005;mitochondrion organization and biogenesis;8.11925853642948e-05!GO:0032561;guanyl ribonucleotide binding;9.7882872683546e-05!GO:0019001;guanyl nucleotide binding;9.7882872683546e-05!GO:0005773;vacuole;9.84469290326815e-05!GO:0009141;nucleoside triphosphate metabolic process;0.000101369072023681!GO:0046034;ATP metabolic process;0.000102871115052142!GO:0006613;cotranslational protein targeting to membrane;0.000103125305142573!GO:0005769;early endosome;0.000116829577793252!GO:0045333;cellular respiration;0.000121636242182272!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00012415399032187!GO:0009144;purine nucleoside triphosphate metabolic process;0.00012415399032187!GO:0030695;GTPase regulator activity;0.000127915014277731!GO:0004004;ATP-dependent RNA helicase activity;0.000131519527057344!GO:0051427;hormone receptor binding;0.000140438037997879!GO:0019783;small conjugating protein-specific protease activity;0.000153838808028455!GO:0016251;general RNA polymerase II transcription factor activity;0.000181955405488325!GO:0051188;cofactor biosynthetic process;0.000201244785027535!GO:0043623;cellular protein complex assembly;0.000210595778741902!GO:0048471;perinuclear region of cytoplasm;0.000221890169075705!GO:0009615;response to virus;0.000225526768029868!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000232174197554311!GO:0004843;ubiquitin-specific protease activity;0.000240497983492059!GO:0016197;endosome transport;0.000241486714037056!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000256771623982092!GO:0003690;double-stranded DNA binding;0.000262545294810211!GO:0035257;nuclear hormone receptor binding;0.000270787976003865!GO:0005070;SH3/SH2 adaptor activity;0.000289909661436931!GO:0022403;cell cycle phase;0.000289909661436931!GO:0015631;tubulin binding;0.000321297579765989!GO:0009966;regulation of signal transduction;0.000327284994960298!GO:0006607;NLS-bearing substrate import into nucleus;0.000327736476312341!GO:0016301;kinase activity;0.000339407463373892!GO:0042110;T cell activation;0.000383902203107908!GO:0046649;lymphocyte activation;0.000384888338212522!GO:0006261;DNA-dependent DNA replication;0.000394904218138945!GO:0000139;Golgi membrane;0.000493610062182699!GO:0015630;microtubule cytoskeleton;0.000518224257748396!GO:0030384;phosphoinositide metabolic process;0.000539140781917966!GO:0006099;tricarboxylic acid cycle;0.000550387993472746!GO:0046356;acetyl-CoA catabolic process;0.000550387993472746!GO:0009055;electron carrier activity;0.000604756898033898!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000614859452583962!GO:0004221;ubiquitin thiolesterase activity;0.000616109350686386!GO:0048518;positive regulation of biological process;0.000624195643526239!GO:0006611;protein export from nucleus;0.000657657234627174!GO:0006310;DNA recombination;0.000660019940753871!GO:0000323;lytic vacuole;0.000670303300620544!GO:0005764;lysosome;0.000670303300620544!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000696262704639245!GO:0006417;regulation of translation;0.00070380144439076!GO:0006612;protein targeting to membrane;0.000711757909520498!GO:0005083;small GTPase regulator activity;0.000716679799890378!GO:0031252;leading edge;0.000716679799890378!GO:0009108;coenzyme biosynthetic process;0.000764501266171926!GO:0019843;rRNA binding;0.000773605893633024!GO:0048468;cell development;0.000773856469955246!GO:0051789;response to protein stimulus;0.000820539267537806!GO:0006986;response to unfolded protein;0.000820539267537806!GO:0008654;phospholipid biosynthetic process;0.00085128259182983!GO:0006084;acetyl-CoA metabolic process;0.00085521605023733!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000863776315408713!GO:0008287;protein serine/threonine phosphatase complex;0.000881167782747525!GO:0022415;viral reproductive process;0.000902767736159093!GO:0005885;Arp2/3 protein complex;0.000936561596731761!GO:0006891;intra-Golgi vesicle-mediated transport;0.000950115334965612!GO:0006752;group transfer coenzyme metabolic process;0.000954189649808611!GO:0008047;enzyme activator activity;0.000984613505514368!GO:0005637;nuclear inner membrane;0.00100812364377796!GO:0007050;cell cycle arrest;0.00105306014770115!GO:0045941;positive regulation of transcription;0.00109965762548292!GO:0006414;translational elongation;0.00118406165664654!GO:0051329;interphase of mitotic cell cycle;0.001277611986154!GO:0005774;vacuolar membrane;0.00128314585028233!GO:0046966;thyroid hormone receptor binding;0.00140160183200551!GO:0009967;positive regulation of signal transduction;0.00147652137928478!GO:0051301;cell division;0.00148804645042988!GO:0006468;protein amino acid phosphorylation;0.00170074703714896!GO:0001772;immunological synapse;0.00173675628257577!GO:0031326;regulation of cellular biosynthetic process;0.00179755660045805!GO:0019867;outer membrane;0.00185673890945975!GO:0005798;Golgi-associated vesicle;0.00187349466166242!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0018798982312761!GO:0006405;RNA export from nucleus;0.00192070265137514!GO:0046822;regulation of nucleocytoplasmic transport;0.0019321169109598!GO:0031072;heat shock protein binding;0.0019421736189666!GO:0033673;negative regulation of kinase activity;0.0019421736189666!GO:0006469;negative regulation of protein kinase activity;0.0019421736189666!GO:0031625;ubiquitin protein ligase binding;0.00194767050597866!GO:0046489;phosphoinositide biosynthetic process;0.00197859924173167!GO:0043021;ribonucleoprotein binding;0.00197983011256961!GO:0003899;DNA-directed RNA polymerase activity;0.00198233961605503!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00201118217935186!GO:0042802;identical protein binding;0.00202856527699647!GO:0006650;glycerophospholipid metabolic process;0.00209074274768585!GO:0051325;interphase;0.00209074274768585!GO:0008017;microtubule binding;0.00211613878422758!GO:0031968;organelle outer membrane;0.00218891435324046!GO:0005741;mitochondrial outer membrane;0.00225258415054995!GO:0051252;regulation of RNA metabolic process;0.00225258415054995!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00241529884965738!GO:0005096;GTPase activator activity;0.00251844929698284!GO:0009109;coenzyme catabolic process;0.00253123123343552!GO:0006338;chromatin remodeling;0.00253786695906351!GO:0000087;M phase of mitotic cell cycle;0.00266006882686051!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00278477671631474!GO:0051090;regulation of transcription factor activity;0.00278686568138312!GO:0051223;regulation of protein transport;0.00285461416221449!GO:0045893;positive regulation of transcription, DNA-dependent;0.00285850954341229!GO:0044452;nucleolar part;0.00293602050604681!GO:0005765;lysosomal membrane;0.00295529722350062!GO:0008022;protein C-terminus binding;0.00300647836292384!GO:0044437;vacuolar part;0.0031301508822445!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00313496558369013!GO:0000082;G1/S transition of mitotic cell cycle;0.00320231377538341!GO:0007067;mitosis;0.003279953922791!GO:0008139;nuclear localization sequence binding;0.00328969646856037!GO:0051348;negative regulation of transferase activity;0.00332039703341388!GO:0030518;steroid hormone receptor signaling pathway;0.00336196652998992!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00336625773591839!GO:0016790;thiolester hydrolase activity;0.00345455000643295!GO:0005669;transcription factor TFIID complex;0.00367929705430896!GO:0043488;regulation of mRNA stability;0.00369436974997877!GO:0043487;regulation of RNA stability;0.00369436974997877!GO:0046983;protein dimerization activity;0.00372623307722217!GO:0009889;regulation of biosynthetic process;0.00372957369239875!GO:0005684;U2-dependent spliceosome;0.00381379596207175!GO:0031902;late endosome membrane;0.00386733558959986!GO:0016584;nucleosome positioning;0.003912710593144!GO:0003682;chromatin binding;0.00393599343657302!GO:0000786;nucleosome;0.00397551376457591!GO:0046474;glycerophospholipid biosynthetic process;0.00398671055289205!GO:0030658;transport vesicle membrane;0.0040777231005676!GO:0045603;positive regulation of endothelial cell differentiation;0.00457060330093355!GO:0006383;transcription from RNA polymerase III promoter;0.00471548367470618!GO:0005048;signal sequence binding;0.00476294249178206!GO:0003746;translation elongation factor activity;0.00483402986837844!GO:0007034;vacuolar transport;0.00490107281670649!GO:0016585;chromatin remodeling complex;0.00499599754058312!GO:0003678;DNA helicase activity;0.00541859027751061!GO:0016311;dephosphorylation;0.00551773420327748!GO:0051251;positive regulation of lymphocyte activation;0.00554228027606518!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00560913288320778!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00608953672031357!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00608953672031357!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00608953672031357!GO:0030258;lipid modification;0.00624084531866311!GO:0051336;regulation of hydrolase activity;0.00624529966822376!GO:0000118;histone deacetylase complex;0.00643807869193638!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00668993547028003!GO:0003725;double-stranded RNA binding;0.00702072154156092!GO:0017091;AU-rich element binding;0.00717167262675756!GO:0050779;RNA destabilization;0.00717167262675756!GO:0000289;poly(A) tail shortening;0.00717167262675756!GO:0003711;transcription elongation regulator activity;0.00724385614813823!GO:0051338;regulation of transferase activity;0.00728158573280256!GO:0043549;regulation of kinase activity;0.00729416853490962!GO:0043414;biopolymer methylation;0.00780512625545198!GO:0051187;cofactor catabolic process;0.00787601299168567!GO:0004722;protein serine/threonine phosphatase activity;0.00810682449896629!GO:0000049;tRNA binding;0.00852748816677863!GO:0019901;protein kinase binding;0.00858579700154802!GO:0051092;activation of NF-kappaB transcription factor;0.00869052962201226!GO:0006818;hydrogen transport;0.0087025827255241!GO:0048500;signal recognition particle;0.00890008217541007!GO:0051052;regulation of DNA metabolic process;0.00893261964293758!GO:0006984;ER-nuclear signaling pathway;0.00897428219619572!GO:0031982;vesicle;0.0090038949876791!GO:0042101;T cell receptor complex;0.00903014981688053!GO:0003684;damaged DNA binding;0.009149964123322!GO:0015923;mannosidase activity;0.00937719983559397!GO:0045321;leukocyte activation;0.00977952261708567!GO:0030660;Golgi-associated vesicle membrane;0.00989953427663409!GO:0030521;androgen receptor signaling pathway;0.0101133634913869!GO:0051059;NF-kappaB binding;0.0101889376986504!GO:0008276;protein methyltransferase activity;0.0102626767375447!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0103236285496952!GO:0000287;magnesium ion binding;0.010767563761071!GO:0030522;intracellular receptor-mediated signaling pathway;0.0109755969014312!GO:0015992;proton transport;0.0110832709619098!GO:0043681;protein import into mitochondrion;0.0113303481714831!GO:0051235;maintenance of localization;0.0117840718425798!GO:0008637;apoptotic mitochondrial changes;0.0118724283381131!GO:0048487;beta-tubulin binding;0.0119332803036766!GO:0033549;MAP kinase phosphatase activity;0.0119332803036766!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0119332803036766!GO:0006376;mRNA splice site selection;0.0122049411413495!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0122049411413495!GO:0033116;ER-Golgi intermediate compartment membrane;0.0122411011365793!GO:0006919;caspase activation;0.0123547544036635!GO:0004527;exonuclease activity;0.0123678074180721!GO:0032508;DNA duplex unwinding;0.0126124961081926!GO:0032392;DNA geometric change;0.0126124961081926!GO:0045859;regulation of protein kinase activity;0.0131111270611986!GO:0043407;negative regulation of MAP kinase activity;0.0134095960492888!GO:0032200;telomere organization and biogenesis;0.0134541498153392!GO:0000723;telomere maintenance;0.0134541498153392!GO:0043087;regulation of GTPase activity;0.013656406465888!GO:0005657;replication fork;0.0137998569939361!GO:0008601;protein phosphatase type 2A regulator activity;0.0139462511676811!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0141023810919328!GO:0031988;membrane-bound vesicle;0.0141023810919328!GO:0030968;unfolded protein response;0.0142638829821302!GO:0032259;methylation;0.0143450277070452!GO:0008312;7S RNA binding;0.0147005599888019!GO:0009893;positive regulation of metabolic process;0.0147223350800347!GO:0022890;inorganic cation transmembrane transporter activity;0.0147633424445034!GO:0030127;COPII vesicle coat;0.0149970433085515!GO:0012507;ER to Golgi transport vesicle membrane;0.0149970433085515!GO:0043621;protein self-association;0.0151511469773545!GO:0005762;mitochondrial large ribosomal subunit;0.0154133986184365!GO:0000315;organellar large ribosomal subunit;0.0154133986184365!GO:0004672;protein kinase activity;0.0155150756207837!GO:0016569;covalent chromatin modification;0.0157025371030493!GO:0040029;regulation of gene expression, epigenetic;0.0157025371030493!GO:0051098;regulation of binding;0.0157700912342138!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0158580434568093!GO:0016741;transferase activity, transferring one-carbon groups;0.0158845109035704!GO:0008168;methyltransferase activity;0.0159109063311162!GO:0046854;phosphoinositide phosphorylation;0.0167050117536425!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0167054992263552!GO:0016605;PML body;0.0169522326879523!GO:0047485;protein N-terminus binding;0.0171798015903543!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0172127696619893!GO:0019900;kinase binding;0.0172876692170738!GO:0000781;chromosome, telomeric region;0.0173065683757791!GO:0000059;protein import into nucleus, docking;0.0173980078344203!GO:0000209;protein polyubiquitination;0.0174799350100307!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0179287468062316!GO:0045047;protein targeting to ER;0.0179287468062316!GO:0030134;ER to Golgi transport vesicle;0.0184827218190602!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0184827218190602!GO:0019904;protein domain specific binding;0.0184827218190602!GO:0051539;4 iron, 4 sulfur cluster binding;0.0184827218190602!GO:0030118;clathrin coat;0.0188830178376565!GO:0007041;lysosomal transport;0.0188958300142126!GO:0004402;histone acetyltransferase activity;0.0189303208872019!GO:0004468;lysine N-acetyltransferase activity;0.0189303208872019!GO:0008033;tRNA processing;0.0189474509560128!GO:0050811;GABA receptor binding;0.0193068235463018!GO:0016570;histone modification;0.0193945212974081!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0193945212974081!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0198012820086569!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0199105425238613!GO:0033157;regulation of intracellular protein transport;0.0200099592696933!GO:0042306;regulation of protein import into nucleus;0.0200099592696933!GO:0006354;RNA elongation;0.0201224824128078!GO:0000119;mediator complex;0.0201224824128078!GO:0046834;lipid phosphorylation;0.0202763624706538!GO:0000279;M phase;0.0204954287577051!GO:0045926;negative regulation of growth;0.0208063174906051!GO:0019210;kinase inhibitor activity;0.0209831217089412!GO:0005869;dynactin complex;0.0213422249552176!GO:0006302;double-strand break repair;0.0217154499514455!GO:0007006;mitochondrial membrane organization and biogenesis;0.0220265186631484!GO:0019058;viral infectious cycle;0.0221648288153136!GO:0030880;RNA polymerase complex;0.0221673015063647!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0226636205466291!GO:0031410;cytoplasmic vesicle;0.0226636205466291!GO:0043281;regulation of caspase activity;0.0229129483952236!GO:0031461;cullin-RING ubiquitin ligase complex;0.0231549925232729!GO:0005819;spindle;0.02327710209781!GO:0046467;membrane lipid biosynthetic process;0.0233110373782042!GO:0042288;MHC class I protein binding;0.0236665465109582!GO:0030433;ER-associated protein catabolic process;0.0237189694267487!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0237189694267487!GO:0001726;ruffle;0.0237568234188381!GO:0035035;histone acetyltransferase binding;0.0237568234188381!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0241215689910746!GO:0043280;positive regulation of caspase activity;0.0244329064796054!GO:0005521;lamin binding;0.0244432998182164!GO:0043022;ribosome binding;0.0246443595778469!GO:0000060;protein import into nucleus, translocation;0.0248137414349043!GO:0006470;protein amino acid dephosphorylation;0.02481937253743!GO:0003702;RNA polymerase II transcription factor activity;0.0250989819551976!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0251565871333905!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0257471514289958!GO:0030145;manganese ion binding;0.0259515275404069!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0261327329646565!GO:0046426;negative regulation of JAK-STAT cascade;0.0261581964346783!GO:0016859;cis-trans isomerase activity;0.0261682719260052!GO:0016279;protein-lysine N-methyltransferase activity;0.026964546990845!GO:0018024;histone-lysine N-methyltransferase activity;0.026964546990845!GO:0016278;lysine N-methyltransferase activity;0.026964546990845!GO:0045792;negative regulation of cell size;0.0271232659716772!GO:0008624;induction of apoptosis by extracellular signals;0.0271232659716772!GO:0045185;maintenance of protein localization;0.0272211568848774!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0273383110628041!GO:0004860;protein kinase inhibitor activity;0.0276632799552494!GO:0004721;phosphoprotein phosphatase activity;0.0276632799552494!GO:0001667;ameboidal cell migration;0.0278898379929461!GO:0032027;myosin light chain binding;0.0278898379929461!GO:0016023;cytoplasmic membrane-bound vesicle;0.0279034900135383!GO:0007004;telomere maintenance via telomerase;0.0296378849808089!GO:0046979;TAP2 binding;0.0296378849808089!GO:0046977;TAP binding;0.0296378849808089!GO:0046978;TAP1 binding;0.0296378849808089!GO:0000159;protein phosphatase type 2A complex;0.0296605172520945!GO:0045746;negative regulation of Notch signaling pathway;0.029795392329329!GO:0006672;ceramide metabolic process;0.0300725249131437!GO:0032940;secretion by cell;0.030794365965562!GO:0006626;protein targeting to mitochondrion;0.0308029428655039!GO:0050852;T cell receptor signaling pathway;0.0313145435345524!GO:0000188;inactivation of MAPK activity;0.0313145435345524!GO:0006289;nucleotide-excision repair;0.0318288602683066!GO:0016791;phosphoric monoester hydrolase activity;0.0320341455339432!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0321377835201768!GO:0000428;DNA-directed RNA polymerase complex;0.0321377835201768!GO:0042054;histone methyltransferase activity;0.0324992657375658!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0325855416267924!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0325855416267924!GO:0030674;protein binding, bridging;0.0325957595138046!GO:0031647;regulation of protein stability;0.0325979836555112!GO:0004518;nuclease activity;0.0328078886312828!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0336101139828093!GO:0006839;mitochondrial transport;0.03391594771582!GO:0006914;autophagy;0.0339947130252701!GO:0006661;phosphatidylinositol biosynthetic process;0.0339947130252701!GO:0019079;viral genome replication;0.034022412362636!GO:0004197;cysteine-type endopeptidase activity;0.0341020770493494!GO:0043433;negative regulation of transcription factor activity;0.0341020770493494!GO:0046519;sphingoid metabolic process;0.0341730545770861!GO:0046578;regulation of Ras protein signal transduction;0.0343391381788745!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0343391381788745!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0343391381788745!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0343391381788745!GO:0030308;negative regulation of cell growth;0.0343731715470496!GO:0043284;biopolymer biosynthetic process;0.0343731715470496!GO:0031901;early endosome membrane;0.0354581812886697!GO:0042608;T cell receptor binding;0.0355489346352513!GO:0035026;leading edge cell differentiation;0.0355656168045316!GO:0008138;protein tyrosine/serine/threonine phosphatase activity;0.0356780108009914!GO:0000314;organellar small ribosomal subunit;0.0356780108009914!GO:0005763;mitochondrial small ribosomal subunit;0.0356780108009914!GO:0051087;chaperone binding;0.03576315531694!GO:0051091;positive regulation of transcription factor activity;0.0368085461284468!GO:0008536;Ran GTPase binding;0.0368750767570063!GO:0006506;GPI anchor biosynthetic process;0.037425602820247!GO:0006406;mRNA export from nucleus;0.0375032479135084!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0376135984542464!GO:0000776;kinetochore;0.0384953862260011!GO:0032318;regulation of Ras GTPase activity;0.0386640791083562!GO:0051457;maintenance of protein localization in nucleus;0.0392587263790493!GO:0030137;COPI-coated vesicle;0.0402337923149266!GO:0008180;signalosome;0.0403135967793769!GO:0030833;regulation of actin filament polymerization;0.0411245680243486!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0413128431802315!GO:0004177;aminopeptidase activity;0.0416685824725359!GO:0005099;Ras GTPase activator activity;0.0418038370861869!GO:0022411;cellular component disassembly;0.0418910836083351!GO:0006505;GPI anchor metabolic process;0.0419034591932351!GO:0006497;protein amino acid lipidation;0.0420226795541428!GO:0006595;polyamine metabolic process;0.0420279191907184!GO:0016853;isomerase activity;0.0429230202462944!GO:0032507;maintenance of cellular protein localization;0.0430337481361745!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0433892756035872!GO:0015002;heme-copper terminal oxidase activity;0.0433892756035872!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0433892756035872!GO:0004129;cytochrome-c oxidase activity;0.0433892756035872!GO:0006268;DNA unwinding during replication;0.0441905030743358!GO:0022406;membrane docking;0.044609107300982!GO:0048278;vesicle docking;0.044609107300982!GO:0042990;regulation of transcription factor import into nucleus;0.0446125909455749!GO:0042991;transcription factor import into nucleus;0.0446125909455749!GO:0005057;receptor signaling protein activity;0.0446405151733284!GO:0030176;integral to endoplasmic reticulum membrane;0.044731057916257!GO:0005095;GTPase inhibitor activity;0.0454821223951865!GO:0046982;protein heterodimerization activity;0.0465863463773899!GO:0032386;regulation of intracellular transport;0.0467218630502935!GO:0000303;response to superoxide;0.0471408335375468!GO:0045815;positive regulation of gene expression, epigenetic;0.0472025315802241!GO:0008097;5S rRNA binding;0.0480865183092908!GO:0015980;energy derivation by oxidation of organic compounds;0.0480865183092908!GO:0005791;rough endoplasmic reticulum;0.0481019315506135!GO:0004532;exoribonuclease activity;0.0486300377343033!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0486300377343033!GO:0006904;vesicle docking during exocytosis;0.0489045563211798!GO:0030867;rough endoplasmic reticulum membrane;0.0496239917119156
 |sample_id=11307
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=blood
 |top_motifs=RORA:3.33170510617;PITX1..3:3.30176171631;RFX2..5_RFXANK_RFXAP:3.24899083717;PAX3,7:3.23105522459;CREB1:3.22913469144;ATF4:3.20240188101;ATF5_CREB3:3.1430591932;T:3.13210971248;RUNX1..3:2.97514297507;FOX{D1,D2}:2.83644709083;FOXP1:2.78134001247;BPTF:2.74383178893;FOXN1:2.57857407995;TBX4,5:2.46045653029;NFKB1_REL_RELA:2.32645094827;NKX6-1,2:2.27312763554;FOXO1,3,4:2.24316260391;ZBTB16:2.18694352176;FOX{F1,F2,J1}:2.17176186244;DMAP1_NCOR{1,2}_SMARC:2.11672570883;HMX1:2.11442164128;IKZF2:2.08660311702;PAX2:2.0766493643;ELF1,2,4:2.04475109449;TOPORS:1.94867768057;RFX1:1.94445094631;ETS1,2:1.73353209459;PAX4:1.71072350622;JUN:1.66411278961;SPI1:1.51911658748;CDX1,2,4:1.49769125136;ATF6:1.47225693104;NKX2-1,4:1.40038048939;TGIF1:1.29098415881;ZNF384:1.26585270379;BREu{core}:1.19725888698;TLX2:1.12170519711;HIF1A:1.0936226741;IRF1,2:1.0783685598;AIRE:1.02953020496;ATF2:0.958005665111;SPIB:0.919017725334;PPARG:0.9128149511;LEF1_TCF7_TCF7L1,2:0.909295233335;FOX{I1,J2}:0.796384524699;NANOG{mouse}:0.779505227721;SMAD1..7,9:0.691233668569;EGR1..3:0.616097287488;EP300:0.595704440847;MAFB:0.590260484584;FOSL2:0.503804544044;MYB:0.485682611307;TFDP1:0.47105965944;RREB1:0.449873467061;NKX3-1:0.424991565778;GATA6:0.406108941456;HBP1_HMGB_SSRP1_UBTF:0.347709887734;NFE2L1:0.325400639575;FOXD3:0.313672297681;HMGA1,2:0.295451927172;FOXL1:0.278017618188;GCM1,2:0.275624323456;MYFfamily:0.264312958815;FOS_FOS{B,L1}_JUN{B,D}:0.247872749409;ELK1,4_GABP{A,B1}:0.243520296459;SOX2:0.161828187931;NFIL3:0.160320729949;NFATC1..3:0.144721380768;PAX6:0.113855970025;SREBF1,2:0.110146609291;HOX{A6,A7,B6,B7}:0.0289858241667;BACH2:0.0160032532451;RXRA_VDR{dimer}:-0.0273038764401;CUX2:-0.0274955603152;POU2F1..3:-0.0373308128512;NFIX:-0.0487424389864;IRF7:-0.051691262565;NFE2:-0.0537212896241;SNAI1..3:-0.108529077288;ZEB1:-0.151443875807;PDX1:-0.229855489009;MED-1{core}:-0.245395513974;FOXP3:-0.247772619777;CEBPA,B_DDIT3:-0.257951762459;STAT2,4,6:-0.263831458852;EVI1:-0.266197328854;SOX5:-0.300979980119;SPZ1:-0.312943486771;NFY{A,B,C}:-0.323729852616;AR:-0.352240673554;MTF1:-0.353469365819;E2F1..5:-0.357949391154;AHR_ARNT_ARNT2:-0.359379121816;TFAP4:-0.368670384251;ZNF423:-0.369429071306;MTE{core}:-0.371347091716;HES1:-0.398294266378;NR5A1,2:-0.412828255386;PAX5:-0.417182928754;FOXM1:-0.443936261643;TFAP2B:-0.459620864942;GLI1..3:-0.464219138029;SRF:-0.467463914816;HNF4A_NR2F1,2:-0.477252982867;PRRX1,2:-0.504428044134;LMO2:-0.51644239943;MYOD1:-0.532379702026;NKX2-2,8:-0.544300000627;HOXA9_MEIS1:-0.553962482224;NFE2L2:-0.567808540975;bHLH_family:-0.597220455339;XBP1:-0.617963257407;NRF1:-0.618448328999;PBX1:-0.621257812078;ZFP161:-0.629315553658;DBP:-0.64103104062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.661893817683;ALX4:-0.662431935078;UFEwm:-0.663947819095;HLF:-0.683367348566;OCT4_SOX2{dimer}:-0.704561248011;ZBTB6:-0.715110300221;YY1:-0.735074173569;NHLH1,2:-0.757691278762;CRX:-0.760546192657;TFCP2:-0.781018347628;HNF1A:-0.789082374597;STAT5{A,B}:-0.795007640861;ZIC1..3:-0.817480635929;POU1F1:-0.832651888878;PATZ1:-0.864511568197;TEF:-0.904232588127;REST:-0.91979699911;FOXA2:-0.929937743373;MZF1:-0.937427209372;TFAP2{A,C}:-0.939598709443;FOXQ1:-0.979167047809;GATA4:-0.98908387758;TAL1_TCF{3,4,12}:-0.992015582649;MAZ:-1.02874828245;PAX8:-1.06770443007;POU6F1:-1.07896184079;ALX1:-1.08512866202;HSF1,2:-1.08598695774;NANOG:-1.10923780946;HAND1,2:-1.12212119318;HIC1:-1.14068886329;SOX{8,9,10}:-1.1991401627;NR1H4:-1.20233572194;POU3F1..4:-1.23260244649;SP1:-1.25997980094;ZNF143:-1.26687960032;MEF2{A,B,C,D}:-1.26750168818;ZNF238:-1.31135776857;ZNF148:-1.32355661435;ESRRA:-1.38500423975;SOX17:-1.39511768344;TP53:-1.39808781951;RXR{A,B,G}:-1.41046020712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41238685249;CDC5L:-1.4397391755;LHX3,4:-1.46238827456;XCPE1{core}:-1.50980449067;STAT1,3:-1.51042669823;TBP:-1.53110680605;NR6A1:-1.53380098955;GFI1:-1.53507920254;HOX{A5,B5}:-1.61871003787;MYBL2:-1.67681279843;GTF2I:-1.71132864576;ONECUT1,2:-1.71653163891;RBPJ:-1.74240644172;ARID5B:-1.74849035267;NKX2-3_NKX2-5:-1.75090054363;HOX{A4,D4}:-1.77288905782;TEAD1:-1.77528094427;GFI1B:-1.79922424041;GTF2A1,2:-1.87325005641;EN1,2:-2.01275106648;ESR1:-2.02428421234;POU5F1:-2.06593860969;GZF1:-2.07949147465;TLX1..3_NFIC{dimer}:-2.16670201288;NKX3-2:-2.27135399945;EBF1:-2.30956028671;KLF4:-2.33092353578;IKZF1:-2.3966241777;PRDM1:-2.43240285126;VSX1,2:-2.45090768326;ADNP_IRX_SIX_ZHX:-2.55984303269;PAX1,9:-2.67968318146;NR3C1:-3.71531058595
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11307-117C2;search_select_hide=table117:FF:11307-117C2
 }}

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FF:11307-117C2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0