FF:11674-122G9: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Smooth Muscle Cells - Tracheal, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12894
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2587
catalog number	SC3415
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005738

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12894		CAGE		DRX008506		DRR009378

Accession ID Hg19

Library id		BAM		CTSS
CNhs12894		DRZ000803		DRZ002188

Accession ID Hg38

Library id		BAM		CTSS
CNhs12894		DRZ012153		DRZ013538

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.179
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.219
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00563
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.114
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.559
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.788
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.705
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.219
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.215
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.604
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.198
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.556
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.254
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.472
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.219
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.559
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.631
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12894

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.573
MA0003.1	MA0003.1	0.459
MA0004.1	MA0004.1	0.655
MA0006.1	MA0006.1	0.276
MA0007.1	MA0007.1	0.00801
MA0009.1	MA0009.1	0.341
MA0014.1	MA0014.1	0.797
MA0017.1	MA0017.1	0.678
MA0018.2	MA0018.2	2.78849e-4
MA0019.1	MA0019.1	0.219
MA0024.1	MA0024.1	0.00417
MA0025.1	MA0025.1	0.00102
MA0027.1	MA0027.1	0.675
MA0028.1	MA0028.1	2.61895e-6
MA0029.1	MA0029.1	0.562
MA0030.1	MA0030.1	0.996
MA0031.1	MA0031.1	0.761
MA0035.2	MA0035.2	0.227
MA0038.1	MA0038.1	0.101
MA0039.2	MA0039.2	0.311
MA0040.1	MA0040.1	0.157
MA0041.1	MA0041.1	0.309
MA0042.1	MA0042.1	0.332
MA0043.1	MA0043.1	0.00256
MA0046.1	MA0046.1	0.815
MA0047.2	MA0047.2	0.75
MA0048.1	MA0048.1	0.892
MA0050.1	MA0050.1	2.48873e-4
MA0051.1	MA0051.1	0.103
MA0052.1	MA0052.1	0.109
MA0055.1	MA0055.1	0.142
MA0057.1	MA0057.1	0.966
MA0058.1	MA0058.1	0.739
MA0059.1	MA0059.1	0.639
MA0060.1	MA0060.1	1.65978e-5
MA0061.1	MA0061.1	0.132
MA0062.2	MA0062.2	3.27383e-16
MA0065.2	MA0065.2	0.831
MA0066.1	MA0066.1	0.403
MA0067.1	MA0067.1	0.0161
MA0068.1	MA0068.1	0.71
MA0069.1	MA0069.1	0.187
MA0070.1	MA0070.1	0.788
MA0071.1	MA0071.1	0.957
MA0072.1	MA0072.1	0.546
MA0073.1	MA0073.1	0.582
MA0074.1	MA0074.1	0.0583
MA0076.1	MA0076.1	4.61059e-8
MA0077.1	MA0077.1	0.228
MA0078.1	MA0078.1	0.861
MA0079.2	MA0079.2	0.581
MA0080.2	MA0080.2	2.30672e-8
MA0081.1	MA0081.1	0.00746
MA0083.1	MA0083.1	3.25062e-7
MA0084.1	MA0084.1	0.519
MA0087.1	MA0087.1	0.99
MA0088.1	MA0088.1	0.675
MA0090.1	MA0090.1	0.00258
MA0091.1	MA0091.1	3.80951e-5
MA0092.1	MA0092.1	0.765
MA0093.1	MA0093.1	0.892
MA0099.2	MA0099.2	0.0753
MA0100.1	MA0100.1	0.252
MA0101.1	MA0101.1	0.00666
MA0102.2	MA0102.2	0.934
MA0103.1	MA0103.1	0.029
MA0104.2	MA0104.2	0.295
MA0105.1	MA0105.1	0.237
MA0106.1	MA0106.1	0.791
MA0107.1	MA0107.1	0.0012
MA0108.2	MA0108.2	0.00199
MA0111.1	MA0111.1	0.737
MA0112.2	MA0112.2	0.0134
MA0113.1	MA0113.1	0.0137
MA0114.1	MA0114.1	0.657
MA0115.1	MA0115.1	0.235
MA0116.1	MA0116.1	0.386
MA0117.1	MA0117.1	0.186
MA0119.1	MA0119.1	0.016
MA0122.1	MA0122.1	0.75
MA0124.1	MA0124.1	0.539
MA0125.1	MA0125.1	0.624
MA0131.1	MA0131.1	0.109
MA0135.1	MA0135.1	0.627
MA0136.1	MA0136.1	1.63544e-12
MA0137.2	MA0137.2	0.676
MA0138.2	MA0138.2	0.49
MA0139.1	MA0139.1	0.62
MA0140.1	MA0140.1	0.208
MA0141.1	MA0141.1	0.155
MA0142.1	MA0142.1	0.348
MA0143.1	MA0143.1	0.997
MA0144.1	MA0144.1	0.577
MA0145.1	MA0145.1	0.16
MA0146.1	MA0146.1	0.44
MA0147.1	MA0147.1	0.208
MA0148.1	MA0148.1	0.626
MA0149.1	MA0149.1	0.918
MA0150.1	MA0150.1	0.111
MA0152.1	MA0152.1	0.011
MA0153.1	MA0153.1	0.149
MA0154.1	MA0154.1	0.393
MA0155.1	MA0155.1	0.115
MA0156.1	MA0156.1	2.23974e-15
MA0157.1	MA0157.1	0.686
MA0159.1	MA0159.1	0.618
MA0160.1	MA0160.1	0.838
MA0162.1	MA0162.1	0.073
MA0163.1	MA0163.1	0.0435
MA0164.1	MA0164.1	0.765
MA0258.1	MA0258.1	0.245
MA0259.1	MA0259.1	0.291

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12894

Novel motif	Logo	P-value
1	1	0.873
10	10	0.899
100	100	0.55
101	101	0.538
102	102	0.11
103	103	0.64
104	104	0.611
105	105	0.743
106	106	0.0693
107	107	0.0406
108	108	0.317
109	109	0.57
11	11	0.485
110	110	0.23
111	111	0.769
112	112	0.762
113	113	0.0573
114	114	0.483
115	115	0.367
116	116	0.0203
117	117	0.769
118	118	0.899
119	119	0.764
12	12	0.427
120	120	0.231
121	121	0.135
122	122	0.14
123	123	0.082
124	124	0.907
125	125	0.252
126	126	0.671
127	127	0.617
128	128	9.43888e-4
129	129	0.996
13	13	0.892
130	130	0.916
131	131	0.635
132	132	0.455
133	133	0.799
134	134	0.878
135	135	0.48
136	136	0.615
137	137	0.127
138	138	0.405
139	139	0.402
14	14	0.68
140	140	0.768
141	141	0.703
142	142	0.712
143	143	0.718
144	144	0.466
145	145	0.359
146	146	0.501
147	147	0.27
148	148	0.221
149	149	0.0453
15	15	0.733
150	150	0.263
151	151	0.187
152	152	0.252
153	153	0.382
154	154	0.364
155	155	0.133
156	156	0.552
157	157	0.715
158	158	0.00226
159	159	0.113
16	16	0.035
160	160	0.124
161	161	0.908
162	162	0.0468
163	163	0.504
164	164	0.318
165	165	0.411
166	166	0.0709
167	167	0.208
168	168	0.934
169	169	0.0921
17	17	0.507
18	18	0.316
19	19	0.0103
2	2	0.2
20	20	0.271
21	21	0.0978
22	22	0.142
23	23	0.0492
24	24	0.524
25	25	0.312
26	26	0.153
27	27	0.459
28	28	0.0634
29	29	0.76
3	3	0.624
30	30	0.361
31	31	0.257
32	32	2.49413e-9
33	33	0.246
34	34	0.436
35	35	0.93
36	36	0.161
37	37	0.278
38	38	0.911
39	39	0.146
4	4	0.203
40	40	0.533
41	41	0.0289
42	42	0.535
43	43	0.397
44	44	0.819
45	45	0.351
46	46	0.174
47	47	0.583
48	48	0.409
49	49	0.672
5	5	0.923
50	50	0.507
51	51	0.669
52	52	0.146
53	53	0.332
54	54	0.545
55	55	0.616
56	56	0.202
57	57	0.959
58	58	0.367
59	59	0.0628
6	6	0.719
60	60	0.437
61	61	0.731
62	62	0.814
63	63	0.42
64	64	0.941
65	65	0.225
66	66	0.38
67	67	0.647
68	68	0.76
69	69	0.174
7	7	0.513
70	70	0.81
71	71	0.197
72	72	0.159
73	73	0.344
74	74	0.14
75	75	0.882
76	76	0.788
77	77	0.307
78	78	0.593
79	79	0.0723
8	8	0.0647
80	80	0.32
81	81	0.289
82	82	0.339
83	83	0.694
84	84	0.966
85	85	0.0108
86	86	0.54
87	87	0.669
88	88	0.395
89	89	0.133
9	9	0.334
90	90	0.747
91	91	0.221
92	92	0.0273
93	93	0.595
94	94	0.782
95	95	0.792
96	96	0.215
97	97	0.253
98	98	0.468
99	99	5.03515e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12894

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000184 human smooth muscle cell of trachea sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000119,UBERON:0000383,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001005,UBERON:0001007,UBERON:0001015,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001134,UBERON:0001555,UBERON:0001558,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002224,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0003126,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004290,UBERON:0004921,UBERON:0005291,UBERON:0005423,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005738
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002600
+|accession_numbers=CAGE;DRX008506;DRR009378;DRZ000803;DRZ002188;DRZ012153;DRZ013538
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000184
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.33!212.51!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!61.00!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.63!68.21!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.59!ZFP106;;chr6:1389789..1389821,+!p1@FOXF2!1.57!49.19!FOXF2;;chr14:61116183..61116208,-!p1@SIX1!1.51!114.78!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.50!37.39!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.49!93.79!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.47!41.32!NFIX;;chr17:59477233..59477263,+!p1@TBX2!1.44!80.02!TBX2;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.41!HIC1;;chr17:46671108..46671147,-!p1@HOXB5!1.33!20.33!HOXB5;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.89!PRRX1;;chr17:46655704..46655718,-!p2@HOXB4!1.30!28.20!HOXB4;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.64!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.27!89.20!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.27!47.88!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.20!TWIST2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.61!NR2F2;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.74!HOXA5;;chr3:25470156..25470227,+!p2@RARB!1.22!15.74!RARB;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.67!HMGA2;;chr7:27183263..27183284,-!p2@HOXA5!1.21!15.09!HOXA5;;chr17:59477275..59477286,+!p3@TBX2!1.20!19.68!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.20!16.40!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!1.19!66.25!HMGA2;;chr11:47279504..47279563,+!p1@NR1H3!1.18!32.14!NR1H3;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!23.61!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.65!NR2F1;;chr14:75745523..75745537,+!p1@FOS!1.15!1547.91!FOS;;chr15:57511589..57511608,+!p4@TCF12!1.15!13.12!TCF12;;chr15:96873984..96873999,+!p3@NR2F2!1.13!90.51!NR2F2;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.83!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.12!15.74!NFATC2;;chr1:170633262..170633285,+!p3@PRRX1!1.11!13.77!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.09!19.68!TBX2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.43!PRRX2;;chr7:27183114..27183138,-!p3@HOXA5!1.08!11.15!HOXA5;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.09!ZBTB16;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.30!PPARG;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.81!ZBTB38;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.84!IRX2;;chr7:27183191..27183214,-!p4@HOXA5!1.03!9.84!HOXA5;;chr17:46675558..46675577,-!p2@HOXB6!1.03!9.84!HOXB6;;chr9:102584262..102584276,+!p1@NR4A3!1.02!21.64!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.49!PRRX1;;chr5:137801160..137801176,+!p1@EGR1!1.01!927.44!EGR1;;chr8:49833948..49833973,-!p2@SNAI2!1.01!59.69!SNAI2;;chr6:1389989..1390019,+!p2@FOXF2!1.01!9.18!FOXF2;;chr6:1610293..1610310,+!p1@FOXC1!1.00!15.09!FOXC1;;chr8:48650715..48650735,-!p1@CEBPD!0.99!1147.82!CEBPD;;chr19:45971246..45971265,+!p1@FOSB!0.99!165.94!FOSB;;chr7:19157043..19157088,-!p2@TWIST1!0.99!22.30!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.99!17.05!NR2F2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.99!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.98!9.84!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.84!SIX1;;chr3:12330560..12330579,+!p1@PPARG!0.98!9.84!PPARG;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.53!KDM5D;;chr12:52445218..52445237,+!p1@NR4A1!0.95!102.98!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.94!71.49!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.19!SREBF1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.64!OSR1;;chr19:3574330..3574393,+!p2@HMG20B!0.91!7.21!HMG20B;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.21!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!0.91!7.21!FOXG1;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.21!PRRX2;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.21!EBF2;;chr8:49833978..49833996,-!p1@SNAI2!0.90!148.23!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.48!PCBP3;;chr5:92919100..92919135,+!p3@NR2F1!0.90!8.53!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.53!TBX18;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.12!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.56!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.88!6.56!ARNT2;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.21!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.85!28.86!TOX2;;chr5:137804484..137804498,+!p2@EGR1!0.85!25.58!EGR1;;chr9:128509663..128509715,+!p1@PBX3!0.85!21.64!PBX3;;chr14:73360799..73360817,-!p1@DPF3!0.84!21.64!DPF3;;chr20:42543506..42543549,+!p2@TOX2!0.84!15.09!TOX2;;chr12:115122318..115122331,-!p2@TBX3!0.84!5.90!TBX3;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.90!ZFY;;chr7:27142290..27142310,-!p1@HOXA2!0.84!5.90!HOXA2;;chr1:164528410..164528428,+!p1@PBX1!0.83!45.91!PBX1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.02!PBX1;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.04!HIC1;;chr17:7492684..7492778,-!p2@SOX15!0.82!12.46!SOX15;;chr9:73029219..73029289,-!p2@KLF9!0.81!17.71!KLF9;;chr14:75746722..75746777,+!p2@FOS!0.81!7.21!FOS;;chr5:137804357..137804390,+!p4@EGR1!0.81!6.56!EGR1;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.68!MEIS1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.25!PAX3;;chr6:1389824..138984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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002600;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11674-122G9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000184;;FF:0000210
+|is_a=EFO:0002091;;FF:0000184
+|is_obsolete=
+|library_id=CNhs12894
+|library_id_phase_based=2:CNhs12894
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11674
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11674
 |name=Smooth Muscle Cells - Tracheal, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12894,LSID974,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
+|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0587146996704718,0,0.982996133609324,-0.00283469303951945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.478067357478273,0,0,0,0,0,0.265990391364281,0,0,0.0860761399779956,0,0,0,0,0,0,0,0,0,0,0,0,0.628666057187436,0.170810654517804,0,0,0,0,0,0,0,0.0853013437655945,0,0,0,0.559137735074845,0,0.0137920554230385,0,0.122040368514253,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.219032729756858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00656608580707174,0,0,0,-0.0823908175544126,0.244978755161018,0,0.363948287632338,0,0,-0.0980353512377064,0.344794134813604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.013142770955968,0.219032729756858,0,0,0.663541231661492,0.780603083438492,0,0,0,0,0,0
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 |rna_box=122
 |rna_catalog_number=SC3415
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.32547252762851e-226!GO:0005737;cytoplasm;9.00519218509329e-203!GO:0043231;intracellular membrane-bound organelle;1.10496530239847e-169!GO:0043226;organelle;1.54231344449912e-169!GO:0043227;membrane-bound organelle;1.78707236844567e-169!GO:0043229;intracellular organelle;2.9093158401032e-169!GO:0044444;cytoplasmic part;2.2496890814259e-145!GO:0044422;organelle part;2.62114112133764e-123!GO:0044446;intracellular organelle part;7.67922644172586e-122!GO:0032991;macromolecular complex;1.50056385055486e-82!GO:0044237;cellular metabolic process;1.02334115412679e-80!GO:0044238;primary metabolic process;1.20075608567788e-79!GO:0030529;ribonucleoprotein complex;2.21051864855316e-78!GO:0005515;protein binding;1.46934750568508e-72!GO:0005739;mitochondrion;3.11986098160355e-69!GO:0043170;macromolecule metabolic process;2.18800273642925e-67!GO:0043233;organelle lumen;1.28643423360733e-62!GO:0031974;membrane-enclosed lumen;1.28643423360733e-62!GO:0003723;RNA binding;4.24587923088304e-58!GO:0044428;nuclear part;5.17063643119392e-55!GO:0005634;nucleus;4.13992153105234e-53!GO:0031090;organelle membrane;2.51394337842361e-52!GO:0005840;ribosome;1.52882502894421e-51!GO:0006412;translation;1.13269573907596e-47!GO:0019538;protein metabolic process;1.85961800015445e-46!GO:0016043;cellular component organization and biogenesis;3.43382058775563e-46!GO:0044429;mitochondrial part;3.43382058775563e-46!GO:0003735;structural constituent of ribosome;9.46105309000404e-46!GO:0009058;biosynthetic process;1.91321237651632e-43!GO:0033036;macromolecule localization;2.0510819540109e-42!GO:0044260;cellular macromolecule metabolic process;2.22289957869737e-42!GO:0015031;protein transport;3.6991105053065e-42!GO:0044267;cellular protein metabolic process;8.73850388551195e-41!GO:0033279;ribosomal subunit;1.2878466090583e-40!GO:0043234;protein complex;1.89665346928604e-40!GO:0008104;protein localization;7.10614075219039e-40!GO:0005829;cytosol;1.54982268614712e-39!GO:0045184;establishment of protein localization;1.54982268614712e-39!GO:0044249;cellular biosynthetic process;2.60917716092303e-39!GO:0031967;organelle envelope;1.08844460299342e-38!GO:0031975;envelope;2.62337316603441e-38!GO:0009059;macromolecule biosynthetic process;9.71147270137581e-38!GO:0006396;RNA processing;1.79486465254762e-37!GO:0031981;nuclear lumen;7.13187115861416e-34!GO:0010467;gene expression;2.14740091939965e-33!GO:0016071;mRNA metabolic process;5.08069997370154e-32!GO:0046907;intracellular transport;1.10966536577747e-31!GO:0043283;biopolymer metabolic process;3.62575472828812e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.39063040775451e-30!GO:0005740;mitochondrial envelope;3.47926174922054e-30!GO:0065003;macromolecular complex assembly;1.08310394583799e-29!GO:0008380;RNA splicing;1.60260765074958e-29!GO:0031966;mitochondrial membrane;2.00826126675948e-28!GO:0006886;intracellular protein transport;1.42182330785004e-27!GO:0006397;mRNA processing;2.4278881165526e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.58558913025483e-27!GO:0019866;organelle inner membrane;2.7033799435516e-27!GO:0022607;cellular component assembly;6.80697192891116e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.936011197473e-26!GO:0005743;mitochondrial inner membrane;1.78950667162876e-25!GO:0006996;organelle organization and biogenesis;4.2239413367952e-25!GO:0043228;non-membrane-bound organelle;3.37441964299569e-23!GO:0043232;intracellular non-membrane-bound organelle;3.37441964299569e-23!GO:0044445;cytosolic part;3.54844792108348e-23!GO:0048770;pigment granule;1.59500132853878e-22!GO:0042470;melanosome;1.59500132853878e-22!GO:0006119;oxidative phosphorylation;5.12466063959778e-22!GO:0005654;nucleoplasm;1.33527696802551e-21!GO:0012505;endomembrane system;2.94595305369856e-21!GO:0015935;small ribosomal subunit;3.52108836934707e-21!GO:0005783;endoplasmic reticulum;9.04052507184773e-21!GO:0015934;large ribosomal subunit;1.50302725500811e-20!GO:0051641;cellular localization;3.68796189375321e-20!GO:0005681;spliceosome;3.68796189375321e-20!GO:0051649;establishment of cellular localization;4.51517641037708e-20!GO:0031980;mitochondrial lumen;7.65484447025891e-20!GO:0005759;mitochondrial matrix;7.65484447025891e-20!GO:0044455;mitochondrial membrane part;9.15540531394992e-20!GO:0006457;protein folding;1.11903115186096e-19!GO:0022618;protein-RNA complex assembly;8.86007038698831e-19!GO:0008134;transcription factor binding;1.98770003170103e-18!GO:0044451;nucleoplasm part;5.09668969568733e-18!GO:0044432;endoplasmic reticulum part;3.84882537955876e-17!GO:0051186;cofactor metabolic process;3.87227360338127e-17!GO:0005746;mitochondrial respiratory chain;6.59745302549528e-17!GO:0005794;Golgi apparatus;9.4890660570722e-17!GO:0006259;DNA metabolic process;1.90103542110632e-16!GO:0016462;pyrophosphatase activity;2.81779264861606e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.20645882036464e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.21174638267336e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.69474225776438e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.91302842365892e-16!GO:0017111;nucleoside-triphosphatase activity;2.03273797080537e-15!GO:0003676;nucleic acid binding;5.30194725926488e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.89085508615493e-15!GO:0003954;NADH dehydrogenase activity;5.89085508615493e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.89085508615493e-15!GO:0008135;translation factor activity, nucleic acid binding;6.76526332347525e-15!GO:0000166;nucleotide binding;6.89475229734108e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.06403443511935e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.45119102664828e-14!GO:0016192;vesicle-mediated transport;2.77992052786368e-14!GO:0005761;mitochondrial ribosome;2.81333080592715e-14!GO:0000313;organellar ribosome;2.81333080592715e-14!GO:0048193;Golgi vesicle transport;2.81333080592715e-14!GO:0044265;cellular macromolecule catabolic process;2.92276207447806e-14!GO:0043285;biopolymer catabolic process;5.5320099002687e-14!GO:0016874;ligase activity;2.75914960290093e-13!GO:0006605;protein targeting;2.89900264572343e-13!GO:0044248;cellular catabolic process;2.92449641669747e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.05750377635601e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.46056947889273e-13!GO:0051082;unfolded protein binding;3.46056947889273e-13!GO:0006512;ubiquitin cycle;3.57813875482015e-13!GO:0006732;coenzyme metabolic process;3.84398582689639e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.43930205340313e-13!GO:0045271;respiratory chain complex I;4.43930205340313e-13!GO:0005747;mitochondrial respiratory chain complex I;4.43930205340313e-13!GO:0009057;macromolecule catabolic process;5.03335704906786e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.5849287244991e-13!GO:0042773;ATP synthesis coupled electron transport;6.5849287244991e-13!GO:0019941;modification-dependent protein catabolic process;7.17945974883366e-13!GO:0043632;modification-dependent macromolecule catabolic process;7.17945974883366e-13!GO:0005730;nucleolus;7.95606618292348e-13!GO:0044257;cellular protein catabolic process;8.0113172556142e-13!GO:0003743;translation initiation factor activity;8.7723412682898e-13!GO:0006511;ubiquitin-dependent protein catabolic process;9.75052499089044e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.41230100027083e-12!GO:0006413;translational initiation;1.6245858194841e-12!GO:0016070;RNA metabolic process;3.34476406318195e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.34629318515688e-12!GO:0007049;cell cycle;4.57945124856137e-12!GO:0030163;protein catabolic process;4.81728889934462e-12!GO:0005789;endoplasmic reticulum membrane;7.91883239672355e-12!GO:0003712;transcription cofactor activity;1.25826962419272e-11!GO:0005793;ER-Golgi intermediate compartment;1.89183270255676e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.41863763862636e-11!GO:0000375;RNA splicing, via transesterification reactions;2.41863763862636e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.41863763862636e-11!GO:0016491;oxidoreductase activity;2.49800009535571e-11!GO:0008565;protein transporter activity;8.59803001369485e-11!GO:0012501;programmed cell death;9.95018317869944e-11!GO:0006915;apoptosis;1.87498349925729e-10!GO:0009055;electron carrier activity;1.94206391832467e-10!GO:0006446;regulation of translational initiation;2.55958574977169e-10!GO:0048523;negative regulation of cellular process;2.95180221323513e-10!GO:0008219;cell death;5.91786571181022e-10!GO:0016265;death;5.91786571181022e-10!GO:0017076;purine nucleotide binding;6.2080331077695e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.06292761665176e-10!GO:0009259;ribonucleotide metabolic process;7.06292761665176e-10!GO:0043412;biopolymer modification;7.21340896776699e-10!GO:0009150;purine ribonucleotide metabolic process;7.63131517631698e-10!GO:0006163;purine nucleotide metabolic process;8.59132596313544e-10!GO:0005635;nuclear envelope;9.88326155488559e-10!GO:0032553;ribonucleotide binding;1.03509615781937e-09!GO:0032555;purine ribonucleotide binding;1.03509615781937e-09!GO:0016604;nuclear body;2.69210693020401e-09!GO:0006366;transcription from RNA polymerase II promoter;3.11427473666441e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.126689145437e-09!GO:0006164;purine nucleotide biosynthetic process;3.72896997282151e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.02400371428586e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.42008570122849e-09!GO:0006913;nucleocytoplasmic transport;6.64486892380551e-09!GO:0009260;ribonucleotide biosynthetic process;7.70615425559421e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.09056868555964e-09!GO:0031988;membrane-bound vesicle;8.3596323110499e-09!GO:0031965;nuclear membrane;9.06580748580889e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.05163623658902e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.0601749458425e-08!GO:0006464;protein modification process;1.0601749458425e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.08899987468911e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.08899987468911e-08!GO:0022402;cell cycle process;1.09208840081662e-08!GO:0051169;nuclear transport;1.43488301888808e-08!GO:0048519;negative regulation of biological process;1.50450893700769e-08!GO:0006323;DNA packaging;1.65401425213871e-08!GO:0042254;ribosome biogenesis and assembly;1.70895950664894e-08!GO:0009141;nucleoside triphosphate metabolic process;1.82823415675408e-08!GO:0009060;aerobic respiration;1.92160406383883e-08!GO:0015986;ATP synthesis coupled proton transport;2.17444594966911e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.17444594966911e-08!GO:0003924;GTPase activity;2.72811632591174e-08!GO:0008639;small protein conjugating enzyme activity;2.80985178607927e-08!GO:0009056;catabolic process;2.80985178607927e-08!GO:0005768;endosome;2.9327327450741e-08!GO:0031982;vesicle;3.24129918422665e-08!GO:0031410;cytoplasmic vesicle;3.53999701776873e-08!GO:0017038;protein import;3.69395876554839e-08!GO:0045333;cellular respiration;4.37355078548548e-08!GO:0004842;ubiquitin-protein ligase activity;5.14802061058372e-08!GO:0006461;protein complex assembly;5.2433249264037e-08!GO:0046034;ATP metabolic process;5.84373430873228e-08!GO:0051276;chromosome organization and biogenesis;5.94848806863328e-08!GO:0048475;coated membrane;6.09373711012101e-08!GO:0030117;membrane coat;6.09373711012101e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.83096628170023e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.83096628170023e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.96583778976196e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.96583778976196e-08!GO:0019829;cation-transporting ATPase activity;8.28333695892416e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.99950440947629e-08!GO:0050794;regulation of cellular process;1.08030263319151e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.10521354951592e-07!GO:0006974;response to DNA damage stimulus;1.34367715270706e-07!GO:0044453;nuclear membrane part;1.41095519372845e-07!GO:0030120;vesicle coat;1.45009566750866e-07!GO:0030662;coated vesicle membrane;1.45009566750866e-07!GO:0065004;protein-DNA complex assembly;1.47279023705218e-07!GO:0019787;small conjugating protein ligase activity;1.49400101190791e-07!GO:0051188;cofactor biosynthetic process;1.59828694723392e-07!GO:0006091;generation of precursor metabolites and energy;1.60979510901058e-07!GO:0043687;post-translational protein modification;1.63371624280659e-07!GO:0000074;regulation of progression through cell cycle;1.76861479128826e-07!GO:0005788;endoplasmic reticulum lumen;1.85062125406547e-07!GO:0051726;regulation of cell cycle;1.99308163595281e-07!GO:0009117;nucleotide metabolic process;2.01039337656785e-07!GO:0005773;vacuole;2.0252486090191e-07!GO:0044431;Golgi apparatus part;2.28019547876905e-07!GO:0006754;ATP biosynthetic process;3.28742385334685e-07!GO:0006753;nucleoside phosphate metabolic process;3.28742385334685e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.35721602218631e-07!GO:0003713;transcription coactivator activity;3.53153553556077e-07!GO:0051246;regulation of protein metabolic process;4.21598154042656e-07!GO:0030554;adenyl nucleotide binding;4.3745222116654e-07!GO:0005524;ATP binding;4.51720361738648e-07!GO:0042623;ATPase activity, coupled;4.66152461979882e-07!GO:0006099;tricarboxylic acid cycle;4.66152461979882e-07!GO:0046356;acetyl-CoA catabolic process;4.66152461979882e-07!GO:0016563;transcription activator activity;5.0958541034921e-07!GO:0051187;cofactor catabolic process;5.18198030055253e-07!GO:0031252;leading edge;5.23830498406599e-07!GO:0016887;ATPase activity;5.36955112005482e-07!GO:0032559;adenyl ribonucleotide binding;5.84965024775449e-07!GO:0042981;regulation of apoptosis;6.18450079134499e-07!GO:0000278;mitotic cell cycle;6.18450079134499e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.47864825631842e-07!GO:0016607;nuclear speck;6.81250547854432e-07!GO:0043067;regulation of programmed cell death;7.97976375651305e-07!GO:0005770;late endosome;8.67912582530517e-07!GO:0030532;small nuclear ribonucleoprotein complex;9.51894454690782e-07!GO:0009109;coenzyme catabolic process;1.10052482553576e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12970803979696e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.12970803979696e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12970803979696e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.18553650013627e-06!GO:0000785;chromatin;1.27083528046587e-06!GO:0016853;isomerase activity;1.43258442221005e-06!GO:0005694;chromosome;1.53291946990519e-06!GO:0006399;tRNA metabolic process;1.62629027721678e-06!GO:0031324;negative regulation of cellular metabolic process;1.65662726103044e-06!GO:0006084;acetyl-CoA metabolic process;1.66400809339289e-06!GO:0006333;chromatin assembly or disassembly;2.0186922706051e-06!GO:0043038;amino acid activation;2.10609886434119e-06!GO:0006418;tRNA aminoacylation for protein translation;2.10609886434119e-06!GO:0043039;tRNA aminoacylation;2.10609886434119e-06!GO:0000323;lytic vacuole;2.37367822800187e-06!GO:0005764;lysosome;2.37367822800187e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.37367822800187e-06!GO:0016881;acid-amino acid ligase activity;2.77450564329051e-06!GO:0045786;negative regulation of progression through cell cycle;2.83837102822224e-06!GO:0044440;endosomal part;3.74627270301263e-06!GO:0010008;endosome membrane;3.74627270301263e-06!GO:0007005;mitochondrion organization and biogenesis;4.18060682932755e-06!GO:0045259;proton-transporting ATP synthase complex;4.23137175027086e-06!GO:0009719;response to endogenous stimulus;4.92235865752754e-06!GO:0006752;group transfer coenzyme metabolic process;5.71996034827291e-06!GO:0005798;Golgi-associated vesicle;5.79458623634488e-06!GO:0000245;spliceosome assembly;6.21239077474527e-06!GO:0044427;chromosomal part;6.24802272344607e-06!GO:0065002;intracellular protein transport across a membrane;6.55346712227719e-06!GO:0005667;transcription factor complex;6.84560084158896e-06!GO:0008361;regulation of cell size;7.12738979115359e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.21827691170934e-06!GO:0008654;phospholipid biosynthetic process;8.2634947400808e-06!GO:0005762;mitochondrial large ribosomal subunit;8.51637821772972e-06!GO:0000315;organellar large ribosomal subunit;8.51637821772972e-06!GO:0051170;nuclear import;8.91480634462536e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.40182536445176e-06!GO:0009108;coenzyme biosynthetic process;1.01027613575653e-05!GO:0004298;threonine endopeptidase activity;1.01114208033431e-05!GO:0016049;cell growth;1.01728183588692e-05!GO:0009892;negative regulation of metabolic process;1.02133902416023e-05!GO:0032446;protein modification by small protein conjugation;1.0482552347935e-05!GO:0050789;regulation of biological process;1.10387646264248e-05!GO:0016126;sterol biosynthetic process;1.19296785576572e-05!GO:0005643;nuclear pore;1.25009036254213e-05!GO:0000151;ubiquitin ligase complex;1.27199753199563e-05!GO:0030133;transport vesicle;1.31572506386541e-05!GO:0043069;negative regulation of programmed cell death;1.39065808304605e-05!GO:0016564;transcription repressor activity;1.39523605507847e-05!GO:0006606;protein import into nucleus;1.4758495001845e-05!GO:0016567;protein ubiquitination;1.54009854457341e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.5570040199758e-05!GO:0006334;nucleosome assembly;1.57672607125448e-05!GO:0000139;Golgi membrane;1.61856890632491e-05!GO:0005525;GTP binding;1.62372330689798e-05!GO:0008026;ATP-dependent helicase activity;1.65817013771901e-05!GO:0006281;DNA repair;1.72995876466253e-05!GO:0043066;negative regulation of apoptosis;1.75149028392087e-05!GO:0004386;helicase activity;1.76988348847702e-05!GO:0006916;anti-apoptosis;1.88555855354579e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.98866990270679e-05!GO:0008610;lipid biosynthetic process;2.08223974683595e-05!GO:0046930;pore complex;2.42596638585704e-05!GO:0031497;chromatin assembly;2.54479048751619e-05!GO:0006364;rRNA processing;2.56497942164324e-05!GO:0043566;structure-specific DNA binding;2.59439366186812e-05!GO:0006613;cotranslational protein targeting to membrane;2.66661778401705e-05!GO:0019843;rRNA binding;2.70622451630576e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.81860830305589e-05!GO:0016859;cis-trans isomerase activity;2.95777845594606e-05!GO:0003697;single-stranded DNA binding;3.29696617247985e-05!GO:0048522;positive regulation of cellular process;3.60470659575266e-05!GO:0016072;rRNA metabolic process;4.02133719763392e-05!GO:0016481;negative regulation of transcription;4.41701577580095e-05!GO:0016568;chromatin modification;4.41701577580095e-05!GO:0016740;transferase activity;4.4370898303212e-05!GO:0005905;coated pit;4.52604936588966e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.02090902181104e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.27252993869601e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.97723869516781e-05!GO:0032561;guanyl ribonucleotide binding;6.45487479334315e-05!GO:0019001;guanyl nucleotide binding;6.45487479334315e-05!GO:0005791;rough endoplasmic reticulum;6.95179333425234e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;7.10721611160076e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.13357844640396e-05!GO:0006793;phosphorus metabolic process;7.1515676343066e-05!GO:0006796;phosphate metabolic process;7.1515676343066e-05!GO:0016787;hydrolase activity;7.20681102740734e-05!GO:0001558;regulation of cell growth;7.95849101961378e-05!GO:0003714;transcription corepressor activity;8.44495193210828e-05!GO:0019899;enzyme binding;8.4939932066307e-05!GO:0031968;organelle outer membrane;8.52054840455649e-05!GO:0019867;outer membrane;9.49237029497953e-05!GO:0006260;DNA replication;9.80694974339254e-05!GO:0016310;phosphorylation;9.81303800067354e-05!GO:0050657;nucleic acid transport;0.000102930892308256!GO:0051236;establishment of RNA localization;0.000102930892308256!GO:0050658;RNA transport;0.000102930892308256!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000105418488217471!GO:0030867;rough endoplasmic reticulum membrane;0.000119923281702732!GO:0006403;RNA localization;0.000123873438930511!GO:0006695;cholesterol biosynthetic process;0.000125843336872415!GO:0005769;early endosome;0.000126855162383607!GO:0015630;microtubule cytoskeleton;0.000130255689675876!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000149674810783885!GO:0000314;organellar small ribosomal subunit;0.00015538587694435!GO:0005763;mitochondrial small ribosomal subunit;0.00015538587694435!GO:0005741;mitochondrial outer membrane;0.000178496396839358!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000193445255372154!GO:0051789;response to protein stimulus;0.000195686451698754!GO:0006986;response to unfolded protein;0.000195686451698754!GO:0051427;hormone receptor binding;0.000224779744141029!GO:0007243;protein kinase cascade;0.000232330082626681!GO:0033116;ER-Golgi intermediate compartment membrane;0.000277990447049728!GO:0009165;nucleotide biosynthetic process;0.00028446460605745!GO:0003724;RNA helicase activity;0.000297040847310645!GO:0043021;ribonucleoprotein binding;0.000316569115108442!GO:0045454;cell redox homeostasis;0.000335414982144196!GO:0016044;membrane organization and biogenesis;0.000344503408767596!GO:0004177;aminopeptidase activity;0.000360769726883819!GO:0005885;Arp2/3 protein complex;0.000378358698656146!GO:0030027;lamellipodium;0.000386659287931015!GO:0005048;signal sequence binding;0.000396216913304284!GO:0044262;cellular carbohydrate metabolic process;0.000409388146158341!GO:0035257;nuclear hormone receptor binding;0.000454222643496299!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00047547556487505!GO:0043623;cellular protein complex assembly;0.000600410611451912!GO:0008250;oligosaccharyl transferase complex;0.000605712551411!GO:0030029;actin filament-based process;0.000635544640467959!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000656360595929078!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000657110096780542!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000694166273094405!GO:0046474;glycerophospholipid biosynthetic process;0.000700862546631553!GO:0000087;M phase of mitotic cell cycle;0.000722161860810764!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000736246855399408!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000745792564137075!GO:0007067;mitosis;0.000750380423802207!GO:0005813;centrosome;0.00080107464733407!GO:0022403;cell cycle phase;0.000804907277174069!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000829372196474891!GO:0030663;COPI coated vesicle membrane;0.000829372196474891!GO:0030126;COPI vesicle coat;0.000829372196474891!GO:0045893;positive regulation of transcription, DNA-dependent;0.000839284287140141!GO:0051920;peroxiredoxin activity;0.000988060031082231!GO:0045941;positive regulation of transcription;0.00102835293061448!GO:0051301;cell division;0.00106724998681341!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00110551233980499!GO:0015399;primary active transmembrane transporter activity;0.00110551233980499!GO:0006612;protein targeting to membrane;0.00115927474538333!GO:0001726;ruffle;0.00125680752963609!GO:0045892;negative regulation of transcription, DNA-dependent;0.00129185342283689!GO:0043681;protein import into mitochondrion;0.00132593683732495!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00132593683732495!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138437707842214!GO:0003729;mRNA binding;0.00144465876570092!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00144465876570092!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00144465876570092!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00144465876570092!GO:0007010;cytoskeleton organization and biogenesis;0.00149841716454437!GO:0004576;oligosaccharyl transferase activity;0.00153593731804696!GO:0016779;nucleotidyltransferase activity;0.00156996177687892!GO:0051028;mRNA transport;0.00162984949716977!GO:0048518;positive regulation of biological process;0.00165923608025964!GO:0040008;regulation of growth;0.00166725182863795!GO:0042802;identical protein binding;0.00180135543106174!GO:0019752;carboxylic acid metabolic process;0.00180653669656868!GO:0006082;organic acid metabolic process;0.00182453289471958!GO:0005815;microtubule organizing center;0.00185092190998249!GO:0030118;clathrin coat;0.0019079310844239!GO:0033673;negative regulation of kinase activity;0.00195016154190329!GO:0006469;negative regulation of protein kinase activity;0.00195016154190329!GO:0030137;COPI-coated vesicle;0.00201737545480242!GO:0048471;perinuclear region of cytoplasm;0.00206875849897331!GO:0030659;cytoplasmic vesicle membrane;0.00212202734833315!GO:0043488;regulation of mRNA stability;0.00215270852901766!GO:0043487;regulation of RNA stability;0.00215270852901766!GO:0051287;NAD binding;0.0021604123460643!GO:0022890;inorganic cation transmembrane transporter activity;0.0021604123460643!GO:0050662;coenzyme binding;0.00224228648766292!GO:0031902;late endosome membrane;0.00230868029453466!GO:0019222;regulation of metabolic process;0.00243394507276897!GO:0018196;peptidyl-asparagine modification;0.0024473850864517!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0024473850864517!GO:0007050;cell cycle arrest;0.00248583655509677!GO:0006979;response to oxidative stress;0.00253848496751146!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00273725660298068!GO:0008092;cytoskeletal protein binding;0.00286009833134041!GO:0031072;heat shock protein binding;0.00287410685244865!GO:0051329;interphase of mitotic cell cycle;0.00287661787240756!GO:0065007;biological regulation;0.00287661787240756!GO:0065009;regulation of a molecular function;0.00307113043312361!GO:0003899;DNA-directed RNA polymerase activity;0.00309989923172822!GO:0008186;RNA-dependent ATPase activity;0.00320887348756757!GO:0006892;post-Golgi vesicle-mediated transport;0.00322722724763546!GO:0051348;negative regulation of transferase activity;0.00329550651295378!GO:0046467;membrane lipid biosynthetic process;0.00354765456831113!GO:0030134;ER to Golgi transport vesicle;0.00357749251766201!GO:0044255;cellular lipid metabolic process;0.00363598863570565!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00366555823763516!GO:0048500;signal recognition particle;0.00370389439023896!GO:0043284;biopolymer biosynthetic process;0.00375103604781333!GO:0051128;regulation of cellular component organization and biogenesis;0.00377598967531815!GO:0044433;cytoplasmic vesicle part;0.00386667685634052!GO:0007264;small GTPase mediated signal transduction;0.00409472862628389!GO:0008047;enzyme activator activity;0.00409472862628389!GO:0000786;nucleosome;0.00411540965710685!GO:0008154;actin polymerization and/or depolymerization;0.00438691978799987!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00438933646555663!GO:0015992;proton transport;0.00447895076846663!GO:0030132;clathrin coat of coated pit;0.00448142246411929!GO:0006509;membrane protein ectodomain proteolysis;0.00451202709979549!GO:0033619;membrane protein proteolysis;0.00451202709979549!GO:0048487;beta-tubulin binding;0.0045244917460069!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0045244917460069!GO:0015002;heme-copper terminal oxidase activity;0.0045244917460069!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0045244917460069!GO:0004129;cytochrome-c oxidase activity;0.0045244917460069!GO:0006414;translational elongation;0.00456325268121672!GO:0048468;cell development;0.00465587195307762!GO:0006118;electron transport;0.00478741822169744!GO:0030658;transport vesicle membrane;0.00496417730535606!GO:0051087;chaperone binding;0.00501645770167844!GO:0006818;hydrogen transport;0.0052872859739893!GO:0016197;endosome transport;0.00529153127707962!GO:0006740;NADPH regeneration;0.00541118744205446!GO:0006098;pentose-phosphate shunt;0.00541118744205446!GO:0016408;C-acyltransferase activity;0.00541587694278699!GO:0030127;COPII vesicle coat;0.00555520116960806!GO:0012507;ER to Golgi transport vesicle membrane;0.00555520116960806!GO:0017166;vinculin binding;0.00557680377661668!GO:0005581;collagen;0.00589011397506027!GO:0051252;regulation of RNA metabolic process;0.00607063155857281!GO:0016125;sterol metabolic process;0.00626640699308189!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00628445669155624!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00633073316279542!GO:0016860;intramolecular oxidoreductase activity;0.00644059620617101!GO:0046489;phosphoinositide biosynthetic process;0.00645075111217502!GO:0006626;protein targeting to mitochondrion;0.00655049799338884!GO:0005774;vacuolar membrane;0.00669212971427472!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00677687221776059!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00677687221776059!GO:0008139;nuclear localization sequence binding;0.00685707752367057!GO:0035258;steroid hormone receptor binding;0.00700917013484271!GO:0006402;mRNA catabolic process;0.00702304568757517!GO:0005869;dynactin complex;0.00721772514436757!GO:0012506;vesicle membrane;0.00725047471973915!GO:0006650;glycerophospholipid metabolic process;0.00726966486736916!GO:0046483;heterocycle metabolic process;0.00727484538716726!GO:0007040;lysosome organization and biogenesis;0.00741395050147464!GO:0030041;actin filament polymerization;0.00763734105839623!GO:0045045;secretory pathway;0.00768312453795338!GO:0006891;intra-Golgi vesicle-mediated transport;0.00771164632344431!GO:0004004;ATP-dependent RNA helicase activity;0.00786929159374601!GO:0008632;apoptotic program;0.00794946499030357!GO:0003702;RNA polymerase II transcription factor activity;0.00794954417062847!GO:0043492;ATPase activity, coupled to movement of substances;0.00800016260379757!GO:0030176;integral to endoplasmic reticulum membrane;0.00811795343858395!GO:0030119;AP-type membrane coat adaptor complex;0.00815911669189622!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0082195404834927!GO:0045047;protein targeting to ER;0.0082195404834927!GO:0051325;interphase;0.00842013926077056!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0085171605511922!GO:0003690;double-stranded DNA binding;0.00858431073973599!GO:0016363;nuclear matrix;0.00868719486031976!GO:0005096;GTPase activator activity;0.00874554154431195!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00875238259322669!GO:0007006;mitochondrial membrane organization and biogenesis;0.00899607890705401!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00903027774691387!GO:0015631;tubulin binding;0.00918353356384238!GO:0008180;signalosome;0.00930196153497873!GO:0009967;positive regulation of signal transduction;0.00947840802708784!GO:0004364;glutathione transferase activity;0.0095414751951372!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00962178122539982!GO:0033043;regulation of organelle organization and biogenesis;0.00962178122539982!GO:0006778;porphyrin metabolic process;0.0096538568135835!GO:0033013;tetrapyrrole metabolic process;0.0096538568135835!GO:0005637;nuclear inner membrane;0.0102633496686822!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.010362460762374!GO:0051168;nuclear export;0.0105630399304683!GO:0031625;ubiquitin protein ligase binding;0.0109607304475727!GO:0006839;mitochondrial transport;0.0113782846059506!GO:0000059;protein import into nucleus, docking;0.0115139498089257!GO:0008286;insulin receptor signaling pathway;0.0122559262076409!GO:0004860;protein kinase inhibitor activity;0.0127509323955577!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0127521637299487!GO:0030660;Golgi-associated vesicle membrane;0.0127766030623496!GO:0008320;protein transmembrane transporter activity;0.012932896932087!GO:0031124;mRNA 3'-end processing;0.0130170063496782!GO:0030521;androgen receptor signaling pathway;0.0131027742997211!GO:0008312;7S RNA binding;0.0135683220505117!GO:0008629;induction of apoptosis by intracellular signals;0.0137842117889687!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0139235673783975!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0141200484160468!GO:0005100;Rho GTPase activator activity;0.0144589725907467!GO:0030131;clathrin adaptor complex;0.0150287060405364!GO:0006629;lipid metabolic process;0.0157094454857057!GO:0044437;vacuolar part;0.0157321540926255!GO:0051101;regulation of DNA binding;0.0157996931147671!GO:0043022;ribosome binding;0.015926008962798!GO:0005862;muscle thin filament tropomyosin;0.0170585266284765!GO:0050811;GABA receptor binding;0.0172958356187409!GO:0046426;negative regulation of JAK-STAT cascade;0.0174063604332544!GO:0007033;vacuole organization and biogenesis;0.0174514057757614!GO:0006595;polyamine metabolic process;0.0175705370066461!GO:0030031;cell projection biogenesis;0.0176637655451831!GO:0031529;ruffle organization and biogenesis;0.0179362973526343!GO:0048037;cofactor binding;0.017992623932241!GO:0031272;regulation of pseudopodium formation;0.0180382206388314!GO:0031269;pseudopodium formation;0.0180382206388314!GO:0031344;regulation of cell projection organization and biogenesis;0.0180382206388314!GO:0031268;pseudopodium organization and biogenesis;0.0180382206388314!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0180382206388314!GO:0031274;positive regulation of pseudopodium formation;0.0180382206388314!GO:0005777;peroxisome;0.0180975865563165!GO:0042579;microbody;0.0180975865563165!GO:0043065;positive regulation of apoptosis;0.0180975865563165!GO:0051540;metal cluster binding;0.0181376302399227!GO:0051536;iron-sulfur cluster binding;0.0181376302399227!GO:0006739;NADP metabolic process;0.0183317109243339!GO:0007034;vacuolar transport;0.0183988173669528!GO:0051539;4 iron, 4 sulfur cluster binding;0.0184952887018731!GO:0005765;lysosomal membrane;0.0194229879353684!GO:0006352;transcription initiation;0.0199851228508384!GO:0006383;transcription from RNA polymerase III promoter;0.0201493722763466!GO:0043068;positive regulation of programmed cell death;0.0202730004438309!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0204625395573072!GO:0006066;alcohol metabolic process;0.0206001090041432!GO:0016584;nucleosome positioning;0.0207654046777226!GO:0007021;tubulin folding;0.0211261243472677!GO:0005684;U2-dependent spliceosome;0.0214588586684869!GO:0030145;manganese ion binding;0.0215615066357749!GO:0006338;chromatin remodeling;0.0215615066357749!GO:0006401;RNA catabolic process;0.0219689639679601!GO:0009081;branched chain family amino acid metabolic process;0.022239916004518!GO:0035035;histone acetyltransferase binding;0.0222835443311244!GO:0006897;endocytosis;0.0222921920974948!GO:0010324;membrane invagination;0.0222921920974948!GO:0050681;androgen receptor binding;0.0229381715492297!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0229525684765059!GO:0000279;M phase;0.0230670854394!GO:0045792;negative regulation of cell size;0.0236049029026206!GO:0051271;negative regulation of cell motility;0.0241620133653719!GO:0042168;heme metabolic process;0.0242531800215777!GO:0030880;RNA polymerase complex;0.0246541129084298!GO:0006779;porphyrin biosynthetic process;0.0246762395135084!GO:0033014;tetrapyrrole biosynthetic process;0.0246762395135084!GO:0005832;chaperonin-containing T-complex;0.0248479387055271!GO:0040029;regulation of gene expression, epigenetic;0.0253842001499007!GO:0003711;transcription elongation regulator activity;0.0258673163774468!GO:0022408;negative regulation of cell-cell adhesion;0.0261070389551216!GO:0000339;RNA cap binding;0.0268309278241849!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0272255360916152!GO:0004784;superoxide dismutase activity;0.0272255360916152!GO:0009112;nucleobase metabolic process;0.0274039260174036!GO:0005583;fibrillar collagen;0.0283433726373044!GO:0006644;phospholipid metabolic process;0.0284438075104743!GO:0050790;regulation of catalytic activity;0.0287887480106261!GO:0030384;phosphoinositide metabolic process;0.0293415335790141!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0296084390014177!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0297180109722235!GO:0006417;regulation of translation;0.0301006513514943!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0301006513514943!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0301006513514943!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0301006513514943!GO:0001953;negative regulation of cell-matrix adhesion;0.0305977102611271!GO:0030125;clathrin vesicle coat;0.0308283265240658!GO:0030665;clathrin coated vesicle membrane;0.0308283265240658!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309575150429931!GO:0030308;negative regulation of cell growth;0.0309575150429931!GO:0031901;early endosome membrane;0.0313168752586923!GO:0006635;fatty acid beta-oxidation;0.0318580419527152!GO:0022406;membrane docking;0.0318580419527152!GO:0048278;vesicle docking;0.0318580419527152!GO:0030518;steroid hormone receptor signaling pathway;0.0319243150150584!GO:0044438;microbody part;0.032931415049486!GO:0044439;peroxisomal part;0.032931415049486!GO:0005819;spindle;0.0329529474000529!GO:0006007;glucose catabolic process;0.0331022772549916!GO:0005586;collagen type III;0.0331505923746845!GO:0006643;membrane lipid metabolic process;0.0331505923746845!GO:0030833;regulation of actin filament polymerization;0.0337791842242411!GO:0006376;mRNA splice site selection;0.0341312259845017!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0341312259845017!GO:0000902;cell morphogenesis;0.0342450651486215!GO:0032989;cellular structure morphogenesis;0.0342450651486215!GO:0000049;tRNA binding;0.0343970453362241!GO:0008147;structural constituent of bone;0.0344478825217363!GO:0007569;cell aging;0.0347970171630251!GO:0008637;apoptotic mitochondrial changes;0.0351374803359821!GO:0000792;heterochromatin;0.0356452442753121!GO:0030508;thiol-disulfide exchange intermediate activity;0.0359367430228423!GO:0006520;amino acid metabolic process;0.036001054641943!GO:0008299;isoprenoid biosynthetic process;0.0363689574780653!GO:0043414;biopolymer methylation;0.0364587634982616!GO:0016272;prefoldin complex;0.0365265167275271!GO:0033559;unsaturated fatty acid metabolic process;0.03689676658049!GO:0006636;unsaturated fatty acid biosynthetic process;0.03689676658049!GO:0044452;nucleolar part;0.0372209218005977!GO:0003746;translation elongation factor activity;0.0375653101815565!GO:0016251;general RNA polymerase II transcription factor activity;0.0381206684965215!GO:0003684;damaged DNA binding;0.0381443022325823!GO:0006749;glutathione metabolic process;0.0381443022325823!GO:0006607;NLS-bearing substrate import into nucleus;0.0385856756218189!GO:0030199;collagen fibril organization;0.0388144918234567!GO:0004563;beta-N-acetylhexosaminidase activity;0.0394309398926625!GO:0043433;negative regulation of transcription factor activity;0.0402453669074404!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0409011265113782!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0409166899718281!GO:0006720;isoprenoid metabolic process;0.0412722827840698!GO:0043407;negative regulation of MAP kinase activity;0.0420354827698653!GO:0042158;lipoprotein biosynthetic process;0.0428942316544348!GO:0006904;vesicle docking during exocytosis;0.0430842222178177!GO:0006984;ER-nuclear signaling pathway;0.0435981910382108!GO:0006733;oxidoreduction coenzyme metabolic process;0.0437861527792468!GO:0006261;DNA-dependent DNA replication;0.0438870593855218!GO:0031461;cullin-RING ubiquitin ligase complex;0.0440853347936391!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0443605240734568!GO:0003756;protein disulfide isomerase activity;0.044839977977577!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.044839977977577!GO:0009303;rRNA transcription;0.0451658508419981!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.04570500879887!GO:0000428;DNA-directed RNA polymerase complex;0.04570500879887!GO:0008022;protein C-terminus binding;0.04570500879887!GO:0043086;negative regulation of catalytic activity;0.046009669525941!GO:0030911;TPR domain binding;0.0460375570309935!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0460455997403718!GO:0046813;virion attachment, binding of host cell surface receptor;0.0460455997403718!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0460455997403718!GO:0008203;cholesterol metabolic process;0.0461018615754513!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0461018615754513!GO:0010257;NADH dehydrogenase complex assembly;0.0461018615754513!GO:0033108;mitochondrial respiratory chain complex assembly;0.0461018615754513!GO:0000209;protein polyubiquitination;0.0463333994675558!GO:0000096;sulfur amino acid metabolic process;0.0468747476137798!GO:0031123;RNA 3'-end processing;0.0470030307114679!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0470030307114679!GO:0008168;methyltransferase activity;0.0479422712854379!GO:0006289;nucleotide-excision repair;0.0479422712854379!GO:0005938;cell cortex;0.0481057845270629!GO:0019210;kinase inhibitor activity;0.0483058842863373!GO:0009116;nucleoside metabolic process;0.0483754880819173!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0483754880819173!GO:0000082;G1/S transition of mitotic cell cycle;0.0484953125684324!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0487662483421899!GO:0045936;negative regulation of phosphate metabolic process;0.049139341482119!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.049139341482119!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.049139341482119!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0498953820801725
 |sample_id=11674
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=lung
 |top_motifs=GZF1:2.73743043739;TAL1_TCF{3,4,12}:2.21762170901;ZNF238:1.8203101393;DBP:1.67405660998;TFAP4:1.64327212105;HOX{A6,A7,B6,B7}:1.30631233673;ZNF423:1.30518266886;POU3F1..4:1.19267100276;SRF:1.14580831936;GLI1..3:1.14167702342;GFI1B:1.07027113452;NKX2-1,4:1.06881051703;ALX4:1.06199147842;FOXD3:1.04557621621;HOX{A5,B5}:0.993374314446;EN1,2:0.929623269983;TLX1..3_NFIC{dimer}:0.924980655989;LHX3,4:0.897569307488;MYBL2:0.879446528262;EBF1:0.868564768381;AR:0.823903061634;ZIC1..3:0.792661137753;TFCP2:0.78558341535;NKX3-1:0.783965161425;PATZ1:0.783412424399;GTF2I:0.773815785573;UFEwm:0.769932574683;PAX1,9:0.767534109343;NR6A1:0.765584754706;NKX6-1,2:0.741804219819;NANOG{mouse}:0.736742854089;ATF6:0.729913058399;NFIX:0.725376040092;NKX2-2,8:0.678791729121;HES1:0.646654656157;NHLH1,2:0.638759305381;RXRA_VDR{dimer}:0.623206590837;TBX4,5:0.618989118706;TEAD1:0.590400588342;MZF1:0.589389701181;RXR{A,B,G}:0.580944759498;SOX17:0.570931754737;HAND1,2:0.570601305826;PAX4:0.564641026235;PAX6:0.562640203325;PAX5:0.559254480641;HOX{A4,D4}:0.533112566124;HIC1:0.523247275252;MYFfamily:0.508851697249;STAT5{A,B}:0.50213433911;bHLH_family:0.496761669479;ZNF384:0.48313423091;GTF2A1,2:0.465496145425;TBP:0.458559950781;NFATC1..3:0.453655708196;NR3C1:0.45275334973;ONECUT1,2:0.393509746679;AHR_ARNT_ARNT2:0.374253866264;ESR1:0.3741641878;KLF4:0.372050256815;NR5A1,2:0.366707513375;SPZ1:0.359808533672;AIRE:0.354032204954;MAZ:0.351371312328;TOPORS:0.335611603458;SREBF1,2:0.319791396024;HNF4A_NR2F1,2:0.318575713902;NR1H4:0.300323088543;MTF1:0.292993259849;RREB1:0.247620926639;NKX2-3_NKX2-5:0.21072704809;HMGA1,2:0.2093011797;EVI1:0.19484086647;HNF1A:0.174957154893;TP53:0.1728424281;GCM1,2:0.172709418404;LEF1_TCF7_TCF7L1,2:0.171491479556;ESRRA:0.1658289536;IKZF1:0.144419364924;ZBTB6:0.139946077955;PAX3,7:0.120095694589;EGR1..3:0.112367084073;ZNF148:0.10823809283;REST:0.104581630784;TFAP2{A,C}:0.103507826433;SOX5:0.100766300476;MEF2{A,B,C,D}:0.095023960221;POU5F1:0.0877269332329;FOX{D1,D2}:0.0842113984491;PRDM1:0.0651719059502;PAX8:0.0469371185113;HLF:0.0451042457794;HMX1:0.0349879878134;MED-1{core}:0.0309903772612;PDX1:0.0238238883437;SP1:0.0186505357945;TEF:0.014959626944;JUN:-0.00578299252345;POU6F1:-0.0170176013476;FOXO1,3,4:-0.0205045313294;ALX1:-0.0225846141589;HIF1A:-0.0230183825468;XBP1:-0.0234344386619;POU2F1..3:-0.023803765753;BACH2:-0.0369756909947;NFE2L2:-0.037140245067;GATA4:-0.0398321141486;STAT2,4,6:-0.0456848498627;STAT1,3:-0.0681392026576;RUNX1..3:-0.07027074212;PRRX1,2:-0.0866256302783;ZFP161:-0.0958644952852;NANOG:-0.112878823511;ARID5B:-0.117965114269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12262056165;CEBPA,B_DDIT3:-0.128364520842;MTE{core}:-0.129300175983;XCPE1{core}:-0.133282472791;FOXP3:-0.1445145801;FOSL2:-0.148513896569;RFX1:-0.169419646065;FOS_FOS{B,L1}_JUN{B,D}:-0.172078263057;DMAP1_NCOR{1,2}_SMARC:-0.176972544276;TGIF1:-0.194097523227;VSX1,2:-0.194840051345;NFE2:-0.197497904657;CDX1,2,4:-0.199209356721;TFAP2B:-0.203356526801;PBX1:-0.20378419581;MAFB:-0.210238230398;TFDP1:-0.219054087846;HSF1,2:-0.241120483358;SMAD1..7,9:-0.247861301366;TLX2:-0.275491894253;GFI1:-0.276369779447;IRF1,2:-0.287150499489;FOXM1:-0.304871214972;YY1:-0.312470801127;HOXA9_MEIS1:-0.315654976068;RBPJ:-0.329969944231;CDC5L:-0.33666014973;EP300:-0.340010802121;RFX2..5_RFXANK_RFXAP:-0.351060190708;FOXQ1:-0.357934051655;BPTF:-0.363211122455;FOXL1:-0.411437729588;ATF4:-0.412381094435;LMO2:-0.427966223933;ADNP_IRX_SIX_ZHX:-0.43262471149;SOX2:-0.449515927975;CUX2:-0.492767371768;ZNF143:-0.494610642305;ATF5_CREB3:-0.499856457813;NFKB1_REL_RELA:-0.504702348379;RORA:-0.533643518237;ZBTB16:-0.543463959403;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579569565333;ETS1,2:-0.581536411476;GATA6:-0.606553677342;MYB:-0.614040209285;FOX{F1,F2,J1}:-0.614349619139;SPI1:-0.668222079563;IRF7:-0.674223832064;E2F1..5:-0.681417425906;NFIL3:-0.687963343806;BREu{core}:-0.69877942745;FOX{I1,J2}:-0.715354121589;NRF1:-0.716367468053;FOXP1:-0.716622886232;CREB1:-0.741212887005;SNAI1..3:-0.743760021817;ATF2:-0.744282784157;SPIB:-0.750016730516;IKZF2:-0.759643002366;OCT4_SOX2{dimer}:-0.799379728372;FOXA2:-0.830877676402;PPARG:-0.833515079651;PAX2:-0.83676395264;PITX1..3:-0.846580391357;NKX3-2:-0.847062710267;NFY{A,B,C}:-0.858492773607;CRX:-0.884010343965;SOX{8,9,10}:-0.944252986772;ELF1,2,4:-0.951883012236;FOXN1:-0.992555694249;POU1F1:-1.01225961074;NFE2L1:-1.02644609782;ZEB1:-1.04455762318;ELK1,4_GABP{A,B1}:-1.15608838789;T:-1.20438877678;MYOD1:-1.36315646148;HBP1_HMGB_SSRP1_UBTF:-1.36457072512
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11674-122G9;search_select_hide=table117:FF:11674-122G9
 }}

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FF:11674-122G9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:14, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0