FFCP PHASE1:Hg19::chr18:61616559..61616581,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:61616559..61616581,+
|short_description=p2@HMSD
|description=CAGE_peak_2_at_HMSD_5end
|association_with_transcript=-6bp_to_NM_001123366,uc010dqj.2_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284293 | |EntrezGene=284293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23037 | |HGNC=23037 | ||
|TSSclassifier=strong | |||
|UniProt=A8MTL9 | |UniProt=A8MTL9 | ||
|association_with_transcript=-6bp_to_NM_001123366,uc010dqj.2_5end | |||
|cluster_id=chr18:61616559..61616581,+ | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_2_at_HMSD_5end | |||
|id=chr18:61616559..61616581,+ | |||
|ontology_enrichment_celltype=CL:0000451!1.46e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000453;2.24e-10;5!CL:0000451;2.43e-10;10!CL:0000990;1.53e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,2.31e-10,5;CL:0000451,2.67e-10,10;CL:0000990,1.54e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.80e-16!86;UBERON:0002346!1.09e-15!90;UBERON:0000073!1.31e-15!94;UBERON:0001016!1.31e-15!94;UBERON:0003075!2.00e-15!86;UBERON:0007284!2.00e-15!86;UBERON:0001017!2.78e-15!82;UBERON:0001049!5.18e-15!57;UBERON:0005068!5.18e-15!57;UBERON:0006241!5.18e-15!57;UBERON:0007135!5.18e-15!57;UBERON:0002616!1.21e-13!59;UBERON:0003056!8.32e-13!61;UBERON:0002020!5.60e-11!34;UBERON:0003528!5.60e-11!34;UBERON:0000955!7.51e-11!69;UBERON:0006238!7.51e-11!69;UBERON:0002780!9.91e-11!41;UBERON:0001890!9.91e-11!41;UBERON:0006240!9.91e-11!41;UBERON:0001893!9.91e-11!34;UBERON:0000153!1.36e-10!129;UBERON:0007811!1.36e-10!129;UBERON:0002791!2.25e-10!33;UBERON:0003080!3.49e-10!42;UBERON:0000924!1.21e-09!173;UBERON:0006601!1.21e-09!173;UBERON:0000033!1.66e-09!123;UBERON:0001869!1.70e-09!32;UBERON:0004121!2.60e-09!169;UBERON:0000475!2.28e-08!365;UBERON:0000119!4.09e-08!312;UBERON:0000064!4.30e-08!219;UBERON:0000956!8.02e-08!25;UBERON:0000203!8.02e-08!25;UBERON:0000483!9.27e-08!309;UBERON:0000922!4.92e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;2.70e-10;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.97e-12,86;UBERON:0001017,9.51e-12,81;UBERON:0001016,1.71e-11,89;UBERON:0003075,4.29e-11,82;UBERON:0007284,4.29e-11,82;UBERON:0002298,1.69e-10,6;UBERON:0001049,8.04e-10,56;UBERON:0005068,8.04e-10,56;UBERON:0006241,8.04e-10,56;UBERON:0007135,8.04e-10,56;UBERON:0004121,9.06e-09,171;UBERON:0000924,9.06e-09,171;UBERON:0006601,9.06e-09,171;UBERON:0010371,2.18e-08,104;UBERON:0000073,2.22e-08,53;UBERON:0002616,2.22e-08,53;UBERON:0000955,3.36e-08,68;UBERON:0006238,3.36e-08,68;UBERON:0003056,4.17e-08,61 | |||
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| ||
|short_description=p2@HMSD | |||
}} | }} |
Latest revision as of 05:06, 20 September 2015
Short description: | p2@HMSD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMSD_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -6bp_to_NM_001123366, uc010dqj.2_5end |
EntrezGene: | HMSD |
HGNC: | 23037 |
UniProt: | A8MTL9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 2.31e-10 | 5 |
dendritic cell | 2.67e-10 | 10 |
conventional dendritic cell | 1.54e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.97e-12 | 86 |
central nervous system | 9.51e-12 | 81 |
nervous system | 1.71e-11 | 89 |
neural plate | 4.29e-11 | 82 |
presumptive neural plate | 4.29e-11 | 82 |
brainstem | 1.69e-10 | 6 |
neural tube | 8.04e-10 | 56 |
neural rod | 8.04e-10 | 56 |
future spinal cord | 8.04e-10 | 56 |
neural keel | 8.04e-10 | 56 |
ectoderm-derived structure | 9.06e-09 | 171 |
ectoderm | 9.06e-09 | 171 |
presumptive ectoderm | 9.06e-09 | 171 |
ecto-epithelium | 2.18e-08 | 104 |
regional part of nervous system | 2.22e-08 | 53 |
regional part of brain | 2.22e-08 | 53 |
brain | 3.36e-08 | 68 |
future brain | 3.36e-08 | 68 |
pre-chordal neural plate | 4.17e-08 | 61 |