FF:11792-124C1: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13215
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	13
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004924

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13215		CAGE		DRX008193		DRR009065

Accession ID Hg19

Library id		BAM		CTSS
CNhs13215		DRZ000490		DRZ001875

Accession ID Hg38

Library id		BAM		CTSS
CNhs13215		DRZ011840		DRZ013225

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0887
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.139
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.421
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0466
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0466
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.162
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0754
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0275
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.272
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.207
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.74
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.312
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0466
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0823
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0466
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.109
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0466
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.824
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.664
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.47
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.563
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.185
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.627
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.37
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.124
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.337
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.128
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.154
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0466
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.805
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.873
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0466
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.127
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13215

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.76451e-8
MA0003.1	MA0003.1	0.85
MA0004.1	MA0004.1	0.805
MA0006.1	MA0006.1	0.534
MA0007.1	MA0007.1	0.576
MA0009.1	MA0009.1	0.249
MA0014.1	MA0014.1	0.783
MA0017.1	MA0017.1	0.0929
MA0018.2	MA0018.2	0.885
MA0019.1	MA0019.1	0.512
MA0024.1	MA0024.1	0.0307
MA0025.1	MA0025.1	0.0802
MA0027.1	MA0027.1	0.602
MA0028.1	MA0028.1	1.6218e-5
MA0029.1	MA0029.1	0.495
MA0030.1	MA0030.1	0.385
MA0031.1	MA0031.1	0.48
MA0035.2	MA0035.2	0.0416
MA0038.1	MA0038.1	0.157
MA0039.2	MA0039.2	0.772
MA0040.1	MA0040.1	0.207
MA0041.1	MA0041.1	0.317
MA0042.1	MA0042.1	0.697
MA0043.1	MA0043.1	0.0482
MA0046.1	MA0046.1	0.0991
MA0047.2	MA0047.2	0.411
MA0048.1	MA0048.1	0.786
MA0050.1	MA0050.1	6.159e-7
MA0051.1	MA0051.1	0.0095
MA0052.1	MA0052.1	0.00323
MA0055.1	MA0055.1	0.918
MA0057.1	MA0057.1	0.994
MA0058.1	MA0058.1	0.937
MA0059.1	MA0059.1	0.381
MA0060.1	MA0060.1	0.415
MA0061.1	MA0061.1	0.0923
MA0062.2	MA0062.2	1.10158e-15
MA0065.2	MA0065.2	0.029
MA0066.1	MA0066.1	0.271
MA0067.1	MA0067.1	0.976
MA0068.1	MA0068.1	0.124
MA0069.1	MA0069.1	0.807
MA0070.1	MA0070.1	0.582
MA0071.1	MA0071.1	0.427
MA0072.1	MA0072.1	0.707
MA0073.1	MA0073.1	0.786
MA0074.1	MA0074.1	0.522
MA0076.1	MA0076.1	2.67799e-8
MA0077.1	MA0077.1	0.0421
MA0078.1	MA0078.1	0.903
MA0079.2	MA0079.2	0.494
MA0080.2	MA0080.2	1.08937e-12
MA0081.1	MA0081.1	0.0239
MA0083.1	MA0083.1	0.0438
MA0084.1	MA0084.1	0.894
MA0087.1	MA0087.1	0.448
MA0088.1	MA0088.1	0.0316
MA0090.1	MA0090.1	1.98398e-4
MA0091.1	MA0091.1	0.824
MA0092.1	MA0092.1	0.492
MA0093.1	MA0093.1	0.779
MA0099.2	MA0099.2	3.97943e-4
MA0100.1	MA0100.1	0.216
MA0101.1	MA0101.1	0.709
MA0102.2	MA0102.2	0.322
MA0103.1	MA0103.1	0.0643
MA0104.2	MA0104.2	0.179
MA0105.1	MA0105.1	3.65937e-5
MA0106.1	MA0106.1	0.808
MA0107.1	MA0107.1	0.253
MA0108.2	MA0108.2	3.46494e-14
MA0111.1	MA0111.1	0.055
MA0112.2	MA0112.2	0.169
MA0113.1	MA0113.1	0.915
MA0114.1	MA0114.1	0.154
MA0115.1	MA0115.1	0.389
MA0116.1	MA0116.1	1.87927e-5
MA0117.1	MA0117.1	0.781
MA0119.1	MA0119.1	0.489
MA0122.1	MA0122.1	0.817
MA0124.1	MA0124.1	0.828
MA0125.1	MA0125.1	0.723
MA0131.1	MA0131.1	0.259
MA0135.1	MA0135.1	0.0888
MA0136.1	MA0136.1	4.09859e-24
MA0137.2	MA0137.2	0.218
MA0138.2	MA0138.2	0.178
MA0139.1	MA0139.1	0.00516
MA0140.1	MA0140.1	0.0538
MA0141.1	MA0141.1	0.464
MA0142.1	MA0142.1	0.455
MA0143.1	MA0143.1	0.0998
MA0144.1	MA0144.1	0.24
MA0145.1	MA0145.1	0.796
MA0146.1	MA0146.1	0.163
MA0147.1	MA0147.1	0.152
MA0148.1	MA0148.1	0.989
MA0149.1	MA0149.1	0.0749
MA0150.1	MA0150.1	0.305
MA0152.1	MA0152.1	0.0278
MA0153.1	MA0153.1	0.105
MA0154.1	MA0154.1	0.0165
MA0155.1	MA0155.1	0.717
MA0156.1	MA0156.1	2.32561e-22
MA0157.1	MA0157.1	0.138
MA0159.1	MA0159.1	0.222
MA0160.1	MA0160.1	0.364
MA0162.1	MA0162.1	0.665
MA0163.1	MA0163.1	5.84504e-12
MA0164.1	MA0164.1	0.685
MA0258.1	MA0258.1	0.0763
MA0259.1	MA0259.1	0.387

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13215

Novel motif	Logo	P-value
1	1	0.113
10	10	0.0103
100	100	0.767
101	101	0.0955
102	102	0.522
103	103	0.16
104	104	0.679
105	105	0.154
106	106	0.596
107	107	0.478
108	108	0.675
109	109	0.0406
11	11	0.0402
110	110	0.411
111	111	0.384
112	112	0.122
113	113	0.474
114	114	0.238
115	115	0.116
116	116	0.582
117	117	0.0064
118	118	0.4
119	119	0.539
12	12	0.509
120	120	0.482
121	121	0.634
122	122	0.326
123	123	4.42326e-4
124	124	0.0599
125	125	0.978
126	126	0.434
127	127	0.377
128	128	0.663
129	129	0.161
13	13	0.415
130	130	0.889
131	131	0.803
132	132	0.959
133	133	0.247
134	134	0.702
135	135	0.748
136	136	0.657
137	137	0.0709
138	138	0.289
139	139	0.268
14	14	0.396
140	140	0.0213
141	141	0.655
142	142	0.952
143	143	0.00139
144	144	0.479
145	145	0.248
146	146	0.442
147	147	0.0258
148	148	0.0669
149	149	0.807
15	15	0.0998
150	150	0.463
151	151	0.6
152	152	0.329
153	153	0.982
154	154	0.724
155	155	0.0143
156	156	0.585
157	157	0.0644
158	158	0.289
159	159	0.383
16	16	0.623
160	160	0.559
161	161	0.175
162	162	0.166
163	163	0.448
164	164	0.118
165	165	0.183
166	166	0.797
167	167	0.269
168	168	0.2
169	169	0.348
17	17	0.872
18	18	0.611
19	19	0.609
2	2	0.909
20	20	0.758
21	21	0.312
22	22	0.989
23	23	0.54
24	24	0.586
25	25	0.0645
26	26	0.123
27	27	0.155
28	28	0.56
29	29	0.0176
3	3	0.0464
30	30	0.198
31	31	0.932
32	32	0.307
33	33	0.528
34	34	0.958
35	35	0.185
36	36	0.0248
37	37	0.229
38	38	0.666
39	39	0.318
4	4	0.609
40	40	0.348
41	41	0.485
42	42	0.0647
43	43	0.444
44	44	0.268
45	45	0.499
46	46	0.0895
47	47	0.0115
48	48	0.0349
49	49	0.161
5	5	0.565
50	50	0.786
51	51	0.609
52	52	0.298
53	53	0.216
54	54	0.806
55	55	0.552
56	56	0.465
57	57	0.206
58	58	0.111
59	59	0.31
6	6	0.673
60	60	0.514
61	61	0.0812
62	62	0.0481
63	63	0.514
64	64	0.128
65	65	0.916
66	66	0.819
67	67	0.924
68	68	0.688
69	69	0.864
7	7	0.243
70	70	0.0586
71	71	0.0351
72	72	0.0561
73	73	0.552
74	74	0.379
75	75	0.0162
76	76	0.434
77	77	0.754
78	78	0.0296
79	79	0.239
8	8	0.431
80	80	0.0948
81	81	0.42
82	82	0.139
83	83	0.614
84	84	0.196
85	85	0.705
86	86	0.168
87	87	0.362
88	88	0.749
89	89	0.682
9	9	0.761
90	90	0.0166
91	91	0.636
92	92	0.395
93	93	0.205
94	94	0.107
95	95	0.0103
96	96	0.0541
97	97	0.311
98	98	0.303
99	99	0.247

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13215

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004924
+|accession_numbers=CAGE;DRX008193;DRR009065;DRZ000490;DRZ001875;DRZ011840;DRZ013225
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Previously: CD4-positiveCD25-CD45RA- naive conventional T cells expanded, donor1. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:231090433..231090469,+!p1@SP140!1.88!74.56!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.80!61.64!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.68!63.11!STAT4;;chr2:192015750..192015793,-!p2@STAT4!1.61!52.46!STAT4;;chr4:57522598..57522664,-!p3@HOPX!1.59!37.62!HOPX;;chr4:57522674..57522699,-!p5@HOPX!1.57!36.49!HOPX;;chr2:231090471..231090504,+!p2@SP140!1.57!35.92!SP140;;chr20:50159198..50159299,-!p1@NFATC2!1.54!48.27!NFATC2;;chr7:50344251..50344288,+!p3@IKZF1!1.53!32.63!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.50!81.47!AKNA;;chr10:8096631..8096660,+!p1@GATA3!1.50!36.49!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.50!35.69!GATA3;;chr14:75988771..75988826,+!p1@BATF!1.47!37.62!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.47!35.24!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.87!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.45!27.31!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.43!26.06!KDM5D;;chr4:109087445..109087463,-!p1@LEF1!1.40!24.25!LEF1;;chr6:391743..391759,+!p1@IRF4!1.39!23.46!IRF4;;chr7:50343895..50343936,+!p5@IKZF1!1.38!23.12!IKZF1;;chr16:68119324..68119364,+!p1@NFATC3!1.37!96.88!NFATC3;;chr3:63953435..63953499,+!p1@ATXN7!1.37!22.66!ATXN7;;chr3:18480217..18480239,-!p3@SATB1!1.36!21.87!SATB1;;chr4:57522166..57522260,-!p2@HOPX!1.35!24.59!HOPX;;chr1:23857698..23857733,-!p1@E2F2!1.31!35.35!E2F2;;chr17:45810594..45810608,+!p1@TBX21!1.28!18.13!TBX21;;chr17:37934365..37934387,-!p2@IKZF3!1.24!16.54!IKZF3;;chr19:16435625..16435682,+!p1@KLF2!1.22!488.59!KLF2;;chr1:25291475..25291511,-!p2@RUNX3!1.22!15.64!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.20!93.93!ELF1;;chr19:19779619..19779670,+!p1@ZNF101!1.17!38.87!ZNF101;;chr1:25256756..25256774,-!p1@RUNX3!1.17!25.95!RUNX3;;chr20:56195474..56195506,-!p1@ZBP1!1.14!12.80!ZBP1;;chr11:128563948..128564003,+!p1@FLI1!1.13!149.57!FLI1;;chr16:79634624..79634642,-!p1@MAF!1.13!49.29!MAF;;chr16:79634595..79634620,-!p2@MAF!1.13!22.66!MAF;;chr4:57522513..57522548,-!p4@HOPX!1.13!12.58!HOPX;;chr16:88752889..88752921,-!p1@SNAI3!1.11!14.05!SNAI3;;chr7:77428066..77428132,+!p2@PHTF2!1.10!75.12!PHTF2;;chr19:19729477..19729542,-!p1@PBX4!1.10!24.93!PBX4;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.44!GFI1;;chr17:38020392..38020477,-!p1@IKZF3!1.06!10.42!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.04!52.80!RORA;;chr6:15249128..15249177,+!p4@JARID2!1.03!17.68!JARID2;;chr7:137620650..137620677,-!p3@CREB3L2!1.03!9.74!CREB3L2;;chr11:47236584..47236679,+!p1@DDB2!1.00!99.37!DDB2;;chr12:56415246..56415286,+!p2@IKZF4!1.00!9.06!IKZF4;;chr2:231090344..231090361,-!p3@SP110!1.00!8.95!SP110;;chr6:45390269..45390298,+!p5@RUNX2!0.99!14.84!RUNX2;;chr6:106546808..106546833,+!p3@PRDM1!0.98!10.76!PRDM1;;chr14:75988831..75988847,+!p2@BATF!0.98!8.61!BATF;;chr3:27763807..27763822,-!p1@EOMES!0.98!8.50!EOMES;;chr1:158978768..158978800,+!p8@IFI16!0.97!8.27!IFI16;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.27!ZFY;;chr21:36421535..36421610,-!p2@RUNX1!0.96!30.03!RUNX1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.04!IKZF3;;chr11:128392085..128392232,-!p1@ETS1!0.94!265.60!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.93!19.38!CREM;;chr17:37934204..37934241,-!p3@IKZF3!0.93!7.59!IKZF3;;chr6:45390300..45390335,+!p4@RUNX2!0.92!11.67!RUNX2;;chr20:52226313..52226350,-!p3@ZNF217!0.92!7.25!ZNF217;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.15!ZNF92;;chr1:158979686..158979745,+!p1@IFI16!0.90!236.48!IFI16;;chr16:88752861..88752884,-!p2@SNAI3!0.90!7.03!SNAI3;;chr8:60031619..60031676,-!p1@TOX!0.89!15.07!TOX;;chr21:36421147..36421193,-!p10@RUNX1!0.89!6.80!RUNX1;;chr2:70142232..70142251,+!p1@MXD1!0.88!38.87!MXD1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.88!37.96!LRRFIP1;;chr7:21467802..21467840,+!p3@SP4!0.88!14.05!SP4;;chr3:18487057..18487105,-!p4@SATB1!0.88!6.57!SATB1;;chr3:71179699..71179744,-!p2@FOXP1!0.87!51.22!FOXP1;;chr10:8095593..8095625,+!p3@GATA3!0.87!7.59!GATA3;;chr7:137620684..137620711,-!p4@CREB3L2!0.87!6.35!CREB3L2;;chr20:56195525..56195556,-!p2@ZBP1!0.87!6.35!ZBP1;;chr21:36421347..36421380,-!p8@RUNX1!0.86!6.23!RUNX1;;chr4:57522701..57522712,-!p10@HOPX!0.85!6.01!HOPX;;chr4:185395633..185395651,-!p2@IRF2!0.83!9.52!IRF2;;chrX:49121165..49121179,-!p1@FOXP3!0.81!5.44!FOXP3;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.28!NFATC3;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.62!HIC1;;chr4:109088940..109089037,-!p4@LEF1!0.79!5.10!LEF1;;chr6:106546731..106546755,+!p5@PRDM1!0.79!5.10!PRDM1;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.99!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!0.78!4.99!IKZF3;;chr2:231084659..231084721,-!p1@SP110!0.77!126.91!SP110;;chr11:128392273..128392308,-!p2@ETS1!0.77!22.55!ETS1;;chr13:41593493..41593506,-!p8@ELF1!0.77!4.87!ELF1;;chrY:21906623..21906637,-!p3@KDM5D!0.77!4.87!KDM5D;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.80!KLF8;;chr4:109089901..109089930,-!p3@LEF1!0.75!4.65!LEF1;;chr5:133450365..133450444,+!p1@TCF7!0.74!22.89!TCF7;;chr5:321810..321877,+!p1@AHRR!0.74!15.64!AHRR;;chr13:74708246..74708264,-!p8@KLF12!0.74!5.10!KLF12;;chr5:176738887..176738934,-!p1@MXD3!0.73!32.18!MXD3;;chr16: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11792-124C1
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11792-124C1
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13215
+|library_id_phase_based=2:CNhs13215
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11792
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11792
 |name=CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13215,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=3.219
 |sample_age=25
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02775274822625e-245!GO:0043227;membrane-bound organelle;1.8502937860217e-212!GO:0043231;intracellular membrane-bound organelle;5.48544702931722e-212!GO:0043226;organelle;1.33472744921946e-201!GO:0043229;intracellular organelle;8.01711380778146e-201!GO:0005737;cytoplasm;2.96123272406666e-152!GO:0044422;organelle part;2.87636267964446e-141!GO:0044446;intracellular organelle part;1.82336894040187e-139!GO:0005634;nucleus;3.43599803127041e-111!GO:0032991;macromolecular complex;7.32590792164206e-109!GO:0044444;cytoplasmic part;9.56504279842041e-105!GO:0044237;cellular metabolic process;2.84356671083952e-103!GO:0043170;macromolecule metabolic process;1.45886467666815e-102!GO:0044238;primary metabolic process;1.26918145708046e-100!GO:0030529;ribonucleoprotein complex;2.24104492303335e-87!GO:0044428;nuclear part;3.78077092006459e-85!GO:0003723;RNA binding;4.23515908422726e-79!GO:0043233;organelle lumen;7.0412263249297e-70!GO:0031974;membrane-enclosed lumen;7.0412263249297e-70!GO:0043283;biopolymer metabolic process;6.84841371403531e-69!GO:0005515;protein binding;2.8963744797257e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69135028683305e-58!GO:0043234;protein complex;1.02731014673226e-56!GO:0005739;mitochondrion;1.49157391595285e-56!GO:0010467;gene expression;2.23023755494338e-53!GO:0006396;RNA processing;2.23023755494338e-53!GO:0006412;translation;1.448501578015e-52!GO:0019538;protein metabolic process;4.33415415892572e-52!GO:0033036;macromolecule localization;1.62658510179483e-49!GO:0044267;cellular protein metabolic process;4.77143222597142e-49!GO:0031981;nuclear lumen;7.47225586485304e-49!GO:0005840;ribosome;8.90480077484786e-49!GO:0044260;cellular macromolecule metabolic process;3.6221175862357e-48!GO:0015031;protein transport;1.12631013758044e-47!GO:0006259;DNA metabolic process;1.26111788759412e-47!GO:0016071;mRNA metabolic process;9.19971666507038e-47!GO:0045184;establishment of protein localization;1.36057972496606e-45!GO:0008104;protein localization;1.36057972496606e-45!GO:0003735;structural constituent of ribosome;5.48071578907797e-43!GO:0031090;organelle membrane;1.16026201909021e-41!GO:0031967;organelle envelope;5.39951703801967e-41!GO:0031975;envelope;1.28477383604996e-40!GO:0006397;mRNA processing;1.6423570814135e-40!GO:0044429;mitochondrial part;1.65212565098391e-40!GO:0009059;macromolecule biosynthetic process;2.37829465480893e-40!GO:0008380;RNA splicing;3.75309101886257e-40!GO:0003676;nucleic acid binding;6.23016530932497e-40!GO:0033279;ribosomal subunit;5.20078647657309e-38!GO:0016043;cellular component organization and biogenesis;3.97927377468351e-37!GO:0046907;intracellular transport;4.31904368044627e-36!GO:0005829;cytosol;1.47801774076451e-35!GO:0007049;cell cycle;6.25857960966654e-34!GO:0065003;macromolecular complex assembly;8.04478865271527e-34!GO:0006886;intracellular protein transport;3.11677193333555e-33!GO:0009058;biosynthetic process;5.78175615592091e-33!GO:0044249;cellular biosynthetic process;9.32751462826587e-33!GO:0005654;nucleoplasm;2.90771973059873e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.42189155639455e-32!GO:0006996;organelle organization and biogenesis;7.58790044887276e-32!GO:0043228;non-membrane-bound organelle;8.85517306151066e-32!GO:0043232;intracellular non-membrane-bound organelle;8.85517306151066e-32!GO:0000166;nucleotide binding;2.59872319701156e-31!GO:0005681;spliceosome;4.52239998222429e-30!GO:0022607;cellular component assembly;1.31464895086381e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.34107610823338e-29!GO:0005694;chromosome;1.94409794991823e-28!GO:0006974;response to DNA damage stimulus;3.55477456916009e-28!GO:0016070;RNA metabolic process;7.50796182975952e-27!GO:0022402;cell cycle process;8.44164887719853e-27!GO:0051641;cellular localization;1.2642726697435e-26!GO:0044427;chromosomal part;1.43124621283014e-26!GO:0051649;establishment of cellular localization;1.65827480015169e-26!GO:0005740;mitochondrial envelope;3.12296304912455e-26!GO:0044445;cytosolic part;6.3898274424165e-26!GO:0019866;organelle inner membrane;2.33649287998558e-25!GO:0031966;mitochondrial membrane;5.09949026127426e-25!GO:0051276;chromosome organization and biogenesis;6.20504330380448e-24!GO:0006281;DNA repair;7.72489043808491e-24!GO:0032553;ribonucleotide binding;8.21040392246936e-24!GO:0032555;purine ribonucleotide binding;8.21040392246936e-24!GO:0006512;ubiquitin cycle;8.6111818058495e-24!GO:0044451;nucleoplasm part;9.77062570489515e-24!GO:0000278;mitotic cell cycle;3.7450055971109e-23!GO:0017076;purine nucleotide binding;4.91739240597913e-23!GO:0005743;mitochondrial inner membrane;1.12217238458528e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.62223828667744e-22!GO:0016462;pyrophosphatase activity;4.32986022382644e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.63460841334639e-22!GO:0006915;apoptosis;5.74337297896093e-22!GO:0012501;programmed cell death;6.18359255534599e-22!GO:0017111;nucleoside-triphosphatase activity;6.99952109181557e-22!GO:0022618;protein-RNA complex assembly;2.2699934825587e-21!GO:0005524;ATP binding;2.92754860672818e-21!GO:0008219;cell death;4.58359111351326e-21!GO:0016265;death;4.58359111351326e-21!GO:0006119;oxidative phosphorylation;8.44492047432709e-21!GO:0032559;adenyl ribonucleotide binding;1.7525810608285e-20!GO:0044265;cellular macromolecule catabolic process;2.58017577430045e-20!GO:0016874;ligase activity;6.38374687805261e-20!GO:0015935;small ribosomal subunit;8.55382929546086e-20!GO:0043412;biopolymer modification;1.11775429690777e-19!GO:0030554;adenyl nucleotide binding;1.65030190396703e-19!GO:0022403;cell cycle phase;1.90044305245524e-19!GO:0000087;M phase of mitotic cell cycle;3.18499796748699e-19!GO:0015934;large ribosomal subunit;3.37624793684313e-19!GO:0007067;mitosis;6.69365351871823e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;6.91806199752113e-19!GO:0044455;mitochondrial membrane part;1.31454851913527e-18!GO:0006323;DNA packaging;3.83155548311364e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;5.25855239202548e-18!GO:0019941;modification-dependent protein catabolic process;6.09853427026509e-18!GO:0043632;modification-dependent macromolecule catabolic process;6.09853427026509e-18!GO:0009719;response to endogenous stimulus;1.02871640348623e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.27343198509489e-17!GO:0051301;cell division;1.54295441108565e-17!GO:0044257;cellular protein catabolic process;1.60752141163178e-17!GO:0031980;mitochondrial lumen;1.77997686799586e-17!GO:0005759;mitochondrial matrix;1.77997686799586e-17!GO:0006464;protein modification process;1.92776131467472e-17!GO:0005730;nucleolus;2.79218812659544e-17!GO:0012505;endomembrane system;3.35924185272879e-17!GO:0008135;translation factor activity, nucleic acid binding;5.39875687453792e-17!GO:0043285;biopolymer catabolic process;8.88326560560233e-17!GO:0000279;M phase;1.0210901238333e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.84698601818237e-16!GO:0016604;nuclear body;1.96323588096897e-16!GO:0016887;ATPase activity;1.98956167262206e-16!GO:0042623;ATPase activity, coupled;2.13389851438014e-16!GO:0006605;protein targeting;2.32345927052893e-16!GO:0009057;macromolecule catabolic process;4.63183167002405e-16!GO:0000785;chromatin;5.22774771894678e-16!GO:0005635;nuclear envelope;7.79752920052911e-16!GO:0006457;protein folding;9.62587805339858e-16!GO:0006913;nucleocytoplasmic transport;1.09734996897739e-15!GO:0043687;post-translational protein modification;1.22135548140094e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.22513396044127e-15!GO:0051169;nuclear transport;2.37209621486153e-15!GO:0005746;mitochondrial respiratory chain;2.47170391796518e-15!GO:0051726;regulation of cell cycle;2.59503067556428e-15!GO:0048770;pigment granule;2.64656107916338e-15!GO:0042470;melanosome;2.64656107916338e-15!GO:0006333;chromatin assembly or disassembly;2.87161923863031e-15!GO:0042981;regulation of apoptosis;2.87161923863031e-15!GO:0000074;regulation of progression through cell cycle;4.27067180558663e-15!GO:0043067;regulation of programmed cell death;5.20622390776577e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.64823362864841e-15!GO:0008134;transcription factor binding;1.09804922486034e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.53346475299057e-14!GO:0031965;nuclear membrane;1.78259712943722e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.05593337367974e-14!GO:0000375;RNA splicing, via transesterification reactions;2.05593337367974e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.05593337367974e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.44900773791257e-14!GO:0003954;NADH dehydrogenase activity;2.44900773791257e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.44900773791257e-14!GO:0006260;DNA replication;4.27662368088884e-14!GO:0044248;cellular catabolic process;5.85646550176066e-14!GO:0003743;translation initiation factor activity;6.71188233411907e-14!GO:0065004;protein-DNA complex assembly;7.19982022680555e-14!GO:0006413;translational initiation;7.67820652024366e-14!GO:0030163;protein catabolic process;2.19312962802631e-13!GO:0004386;helicase activity;2.69921334556858e-13!GO:0050794;regulation of cellular process;7.07223278427455e-13!GO:0016607;nuclear speck;7.54004297239883e-13!GO:0005761;mitochondrial ribosome;7.5500362848285e-13!GO:0000313;organellar ribosome;7.5500362848285e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.15018656028109e-12!GO:0042773;ATP synthesis coupled electron transport;1.15018656028109e-12!GO:0044453;nuclear membrane part;1.32244496197033e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.238470052693e-12!GO:0045271;respiratory chain complex I;2.238470052693e-12!GO:0005747;mitochondrial respiratory chain complex I;2.238470052693e-12!GO:0006334;nucleosome assembly;6.59857882084165e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.97587079413912e-12!GO:0042254;ribosome biogenesis and assembly;1.03551852181457e-11!GO:0048193;Golgi vesicle transport;1.22307279223667e-11!GO:0006446;regulation of translational initiation;1.60548579970977e-11!GO:0031497;chromatin assembly;1.85264020102457e-11!GO:0008026;ATP-dependent helicase activity;3.22768387827912e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.11337715760098e-11!GO:0008639;small protein conjugating enzyme activity;4.16140446697428e-11!GO:0016568;chromatin modification;4.74649863572367e-11!GO:0051082;unfolded protein binding;5.58973903886071e-11!GO:0019787;small conjugating protein ligase activity;7.66327247438374e-11!GO:0004842;ubiquitin-protein ligase activity;9.13386720707749e-11!GO:0017038;protein import;1.03039469228147e-10!GO:0044432;endoplasmic reticulum part;1.21693086819893e-10!GO:0051186;cofactor metabolic process;1.30996439796303e-10!GO:0005794;Golgi apparatus;1.47763120757701e-10!GO:0006793;phosphorus metabolic process;1.51675415935909e-10!GO:0006796;phosphate metabolic process;1.51675415935909e-10!GO:0043566;structure-specific DNA binding;1.82942737221526e-10!GO:0005643;nuclear pore;1.85985259104333e-10!GO:0050657;nucleic acid transport;2.34471289109923e-10!GO:0051236;establishment of RNA localization;2.34471289109923e-10!GO:0050658;RNA transport;2.34471289109923e-10!GO:0006403;RNA localization;2.86272365278963e-10!GO:0016787;hydrolase activity;2.90621728201958e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.02438728121746e-10!GO:0005783;endoplasmic reticulum;6.55873856811864e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.7517778788106e-10!GO:0003697;single-stranded DNA binding;9.47369112880475e-10!GO:0009259;ribonucleotide metabolic process;1.20672591557917e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.51980184869509e-09!GO:0008565;protein transporter activity;1.70516880183993e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.0403539816981e-09!GO:0019829;cation-transporting ATPase activity;2.70235898831935e-09!GO:0065002;intracellular protein transport across a membrane;3.50586333041309e-09!GO:0009260;ribonucleotide biosynthetic process;4.32822364023347e-09!GO:0016881;acid-amino acid ligase activity;4.34617099491287e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.65255537217859e-09!GO:0006164;purine nucleotide biosynthetic process;4.76493749197457e-09!GO:0006163;purine nucleotide metabolic process;5.38221468805439e-09!GO:0016310;phosphorylation;6.12171293567819e-09!GO:0005789;endoplasmic reticulum membrane;6.20663999516889e-09!GO:0046930;pore complex;6.47922926645311e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.57281199768654e-09!GO:0019222;regulation of metabolic process;9.6325587112616e-09!GO:0000775;chromosome, pericentric region;9.81131613836763e-09!GO:0051246;regulation of protein metabolic process;1.21605054610464e-08!GO:0003712;transcription cofactor activity;1.24239169555656e-08!GO:0006732;coenzyme metabolic process;1.28630658697084e-08!GO:0051028;mRNA transport;1.38089510626808e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.41298349930829e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.58488120584369e-08!GO:0009150;purine ribonucleotide metabolic process;1.66157913249307e-08!GO:0005819;spindle;1.73294407054603e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.24963587821638e-08!GO:0016192;vesicle-mediated transport;2.3363619409674e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.53368299165475e-08!GO:0000786;nucleosome;2.56171000994087e-08!GO:0007243;protein kinase cascade;2.83281891887709e-08!GO:0006399;tRNA metabolic process;3.12970568460473e-08!GO:0050789;regulation of biological process;3.21362190756835e-08!GO:0051170;nuclear import;3.93064364968286e-08!GO:0006916;anti-apoptosis;5.27489181273262e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.51143822049964e-08!GO:0016779;nucleotidyltransferase activity;5.74099477888508e-08!GO:0005813;centrosome;6.08744323936256e-08!GO:0004298;threonine endopeptidase activity;6.59784177650983e-08!GO:0016740;transferase activity;6.87824393846665e-08!GO:0006606;protein import into nucleus;6.88130764465599e-08!GO:0032446;protein modification by small protein conjugation;6.96747391620563e-08!GO:0015630;microtubule cytoskeleton;7.0574474866129e-08!GO:0016072;rRNA metabolic process;8.2682679731848e-08!GO:0006310;DNA recombination;8.90191783672378e-08!GO:0006364;rRNA processing;9.33411100480245e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.03839649571635e-07!GO:0043069;negative regulation of programmed cell death;1.04984286503889e-07!GO:0005815;microtubule organizing center;1.05999487248793e-07!GO:0006917;induction of apoptosis;1.13597161820782e-07!GO:0005768;endosome;1.16065469013937e-07!GO:0015986;ATP synthesis coupled proton transport;1.20003463911135e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.20003463911135e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.46419574365722e-07!GO:0043066;negative regulation of apoptosis;1.46769064732301e-07!GO:0016567;protein ubiquitination;1.83642888877135e-07!GO:0012502;induction of programmed cell death;1.92211525459513e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.04895487204541e-07!GO:0009056;catabolic process;2.36910201386845e-07!GO:0006261;DNA-dependent DNA replication;2.49326511864501e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.71247460965626e-07!GO:0043065;positive regulation of apoptosis;2.75831936251613e-07!GO:0009055;electron carrier activity;2.75831936251613e-07!GO:0065009;regulation of a molecular function;2.89176839569285e-07!GO:0019899;enzyme binding;3.36489089928208e-07!GO:0048523;negative regulation of cellular process;3.53560066978903e-07!GO:0009060;aerobic respiration;3.9207600043327e-07!GO:0043068;positive regulation of programmed cell death;4.42248982516021e-07!GO:0000245;spliceosome assembly;4.71306154144891e-07!GO:0000075;cell cycle checkpoint;5.23818737411819e-07!GO:0031323;regulation of cellular metabolic process;5.6214657399987e-07!GO:0045786;negative regulation of progression through cell cycle;6.21173660674252e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.43974032910836e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.43974032910836e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.43974032910836e-07!GO:0030120;vesicle coat;8.00371779973945e-07!GO:0030662;coated vesicle membrane;8.00371779973945e-07!GO:0009142;nucleoside triphosphate biosynthetic process;8.35214356273924e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.35214356273924e-07!GO:0006754;ATP biosynthetic process;9.0929143253069e-07!GO:0006753;nucleoside phosphate metabolic process;9.0929143253069e-07!GO:0051188;cofactor biosynthetic process;1.07190433921589e-06!GO:0043038;amino acid activation;1.10512058939637e-06!GO:0006418;tRNA aminoacylation for protein translation;1.10512058939637e-06!GO:0043039;tRNA aminoacylation;1.10512058939637e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.138809096782e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.33617134214055e-06!GO:0009141;nucleoside triphosphate metabolic process;1.37737184865509e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.44579257940193e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.44579257940193e-06!GO:0048475;coated membrane;1.46340092789802e-06!GO:0030117;membrane coat;1.46340092789802e-06!GO:0051168;nuclear export;1.60964950118523e-06!GO:0006461;protein complex assembly;2.15403036050116e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.27098125175833e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.27098125175833e-06!GO:0046034;ATP metabolic process;2.30054128206034e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.8738424721041e-06!GO:0006366;transcription from RNA polymerase II promoter;2.91928201580291e-06!GO:0007242;intracellular signaling cascade;3.00826678152718e-06!GO:0045259;proton-transporting ATP synthase complex;3.1091488339331e-06!GO:0005793;ER-Golgi intermediate compartment;3.1091488339331e-06!GO:0045333;cellular respiration;3.22326808558435e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.22326808558435e-06!GO:0006613;cotranslational protein targeting to membrane;3.27578845464636e-06!GO:0000151;ubiquitin ligase complex;3.62381177222918e-06!GO:0008632;apoptotic program;3.88120956188109e-06!GO:0051325;interphase;4.44277946690789e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.51485033981247e-06!GO:0015399;primary active transmembrane transporter activity;4.51485033981247e-06!GO:0003713;transcription coactivator activity;4.90445072074325e-06!GO:0003690;double-stranded DNA binding;5.25568455609285e-06!GO:0051329;interphase of mitotic cell cycle;5.49813502221002e-06!GO:0048519;negative regulation of biological process;5.81513763990294e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.8803092063677e-06!GO:0003724;RNA helicase activity;6.53178181908607e-06!GO:0006350;transcription;7.03030763126166e-06!GO:0016563;transcription activator activity;7.6145868539405e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.16851061654104e-06!GO:0005657;replication fork;8.99319334404257e-06!GO:0004674;protein serine/threonine kinase activity;9.03276241588629e-06!GO:0031324;negative regulation of cellular metabolic process;1.21370518355003e-05!GO:0007088;regulation of mitosis;1.22555229267118e-05!GO:0006099;tricarboxylic acid cycle;1.34809121545996e-05!GO:0046356;acetyl-CoA catabolic process;1.34809121545996e-05!GO:0007005;mitochondrion organization and biogenesis;1.38910311583311e-05!GO:0005525;GTP binding;1.64423682503286e-05!GO:0048522;positive regulation of cellular process;1.85223493649208e-05!GO:0006401;RNA catabolic process;1.88701342553488e-05!GO:0007059;chromosome segregation;2.01914644634406e-05!GO:0016363;nuclear matrix;2.18099679146003e-05!GO:0005773;vacuole;2.53237929561882e-05!GO:0009108;coenzyme biosynthetic process;2.59359562529275e-05!GO:0006752;group transfer coenzyme metabolic process;2.81544197470234e-05!GO:0006084;acetyl-CoA metabolic process;2.98800739944802e-05!GO:0007051;spindle organization and biogenesis;3.18543414193882e-05!GO:0008094;DNA-dependent ATPase activity;3.23770918971568e-05!GO:0006302;double-strand break repair;3.41319586596457e-05!GO:0006612;protein targeting to membrane;3.45082430600426e-05!GO:0043623;cellular protein complex assembly;3.66344205886693e-05!GO:0009117;nucleotide metabolic process;4.84341521201958e-05!GO:0010468;regulation of gene expression;4.84423739250118e-05!GO:0016564;transcription repressor activity;6.0361283630878e-05!GO:0009892;negative regulation of metabolic process;6.15443256776008e-05!GO:0000323;lytic vacuole;6.15952147895341e-05!GO:0005764;lysosome;6.15952147895341e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;6.61174193073784e-05!GO:0003924;GTPase activity;6.6624558808726e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.74716409217391e-05!GO:0008234;cysteine-type peptidase activity;6.94265184320808e-05!GO:0000776;kinetochore;7.13443602249714e-05!GO:0065007;biological regulation;7.28136022538209e-05!GO:0005762;mitochondrial large ribosomal subunit;7.62523166824847e-05!GO:0000315;organellar large ribosomal subunit;7.62523166824847e-05!GO:0005798;Golgi-associated vesicle;8.59947729717584e-05!GO:0043492;ATPase activity, coupled to movement of substances;8.92684833334824e-05!GO:0006402;mRNA catabolic process;9.13745358197034e-05!GO:0051427;hormone receptor binding;9.83566995309805e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000100458552854843!GO:0009109;coenzyme catabolic process;0.00011508075993648!GO:0044431;Golgi apparatus part;0.000124197974145057!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000127429837321997!GO:0005770;late endosome;0.000128026253865104!GO:0050790;regulation of catalytic activity;0.000128026253865104!GO:0007093;mitotic cell cycle checkpoint;0.000130365714332571!GO:0009967;positive regulation of signal transduction;0.000131599721553948!GO:0003899;DNA-directed RNA polymerase activity;0.00013286333181906!GO:0003684;damaged DNA binding;0.000138211902339033!GO:0008186;RNA-dependent ATPase activity;0.000140261003632852!GO:0005885;Arp2/3 protein complex;0.000141713322295085!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000143881663603441!GO:0003677;DNA binding;0.000146855926316123!GO:0006417;regulation of translation;0.000158327266159955!GO:0051187;cofactor catabolic process;0.000158610358612623!GO:0035257;nuclear hormone receptor binding;0.000200600222983557!GO:0044440;endosomal part;0.000201763953765984!GO:0010008;endosome membrane;0.000201763953765984!GO:0005667;transcription factor complex;0.000207340598947775!GO:0003678;DNA helicase activity;0.000209535673304905!GO:0032561;guanyl ribonucleotide binding;0.000211349022111837!GO:0019001;guanyl nucleotide binding;0.000211349022111837!GO:0043021;ribonucleoprotein binding;0.000213405486085408!GO:0030384;phosphoinositide metabolic process;0.000261404220514134!GO:0051052;regulation of DNA metabolic process;0.000287246971940279!GO:0015992;proton transport;0.000293057404169228!GO:0006818;hydrogen transport;0.000300395242433609!GO:0003729;mRNA binding;0.000305256447379498!GO:0004518;nuclease activity;0.000323574127787607!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000325610388152897!GO:0008654;phospholipid biosynthetic process;0.000332027333242798!GO:0008270;zinc ion binding;0.000389414743324699!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000391796837118577!GO:0004004;ATP-dependent RNA helicase activity;0.000425709902900768!GO:0006891;intra-Golgi vesicle-mediated transport;0.000435979548954407!GO:0009615;response to virus;0.000435979548954407!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000437351229631329!GO:0003682;chromatin binding;0.000491512443197294!GO:0031982;vesicle;0.00054897954107946!GO:0005637;nuclear inner membrane;0.000632136897970594!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000646045475272391!GO:0004527;exonuclease activity;0.000663587140040555!GO:0031326;regulation of cellular biosynthetic process;0.000663587140040555!GO:0006650;glycerophospholipid metabolic process;0.000672582015727063!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00067538090290811!GO:0032774;RNA biosynthetic process;0.000689282756794585!GO:0000314;organellar small ribosomal subunit;0.000693699129962958!GO:0005763;mitochondrial small ribosomal subunit;0.000693699129962958!GO:0006289;nucleotide-excision repair;0.000743272814950589!GO:0006611;protein export from nucleus;0.000757179172247908!GO:0016853;isomerase activity;0.00079037097103825!GO:0051252;regulation of RNA metabolic process;0.000800012822821315!GO:0007264;small GTPase mediated signal transduction;0.000839570824641245!GO:0000082;G1/S transition of mitotic cell cycle;0.000859385619775549!GO:0006351;transcription, DNA-dependent;0.000875162773316485!GO:0030658;transport vesicle membrane;0.000890236217476636!GO:0015631;tubulin binding;0.00102615543188125!GO:0006383;transcription from RNA polymerase III promoter;0.00105891541297944!GO:0016481;negative regulation of transcription;0.00106499696651363!GO:0048500;signal recognition particle;0.00108866590434967!GO:0045449;regulation of transcription;0.00112334383438663!GO:0046489;phosphoinositide biosynthetic process;0.0011705865673754!GO:0043681;protein import into mitochondrion;0.00117490197697013!GO:0005769;early endosome;0.00122065974108951!GO:0048518;positive regulation of biological process;0.00125056930711264!GO:0007006;mitochondrial membrane organization and biogenesis;0.00126630194741604!GO:0019867;outer membrane;0.0013266247806218!GO:0042802;identical protein binding;0.00136966133847454!GO:0031988;membrane-bound vesicle;0.0014058008292133!GO:0005741;mitochondrial outer membrane;0.00142793475552784!GO:0047485;protein N-terminus binding;0.00143991738797768!GO:0060090;molecular adaptor activity;0.00153625848234833!GO:0000139;Golgi membrane;0.00154501722700197!GO:0031968;organelle outer membrane;0.00160423810474812!GO:0006352;transcription initiation;0.00160607443221635!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166066491752998!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166066491752998!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166066491752998!GO:0000287;magnesium ion binding;0.00168159247503633!GO:0007052;mitotic spindle organization and biogenesis;0.00171059985745059!GO:0022415;viral reproductive process;0.00179642472736563!GO:0008168;methyltransferase activity;0.00182392911295795!GO:0032259;methylation;0.00182392911295795!GO:0031410;cytoplasmic vesicle;0.00183460841352983!GO:0031072;heat shock protein binding;0.00189561338341059!GO:0019843;rRNA binding;0.00191471221537367!GO:0006414;translational elongation;0.00192423398436098!GO:0008312;7S RNA binding;0.00193010455224216!GO:0016741;transferase activity, transferring one-carbon groups;0.001996592119332!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00216498629674427!GO:0045047;protein targeting to ER;0.00216498629674427!GO:0000209;protein polyubiquitination;0.00235887295572816!GO:0016251;general RNA polymerase II transcription factor activity;0.00236094334025974!GO:0030660;Golgi-associated vesicle membrane;0.00258249032549473!GO:0016197;endosome transport;0.00263677108299211!GO:0005048;signal sequence binding;0.00270185249568629!GO:0000922;spindle pole;0.00270353266402415!GO:0006405;RNA export from nucleus;0.00274987305826855!GO:0046474;glycerophospholipid biosynthetic process;0.00274987305826855!GO:0005684;U2-dependent spliceosome;0.00291494000310518!GO:0007265;Ras protein signal transduction;0.00293581949905898!GO:0006607;NLS-bearing substrate import into nucleus;0.00301544095187289!GO:0001772;immunological synapse;0.00301544095187289!GO:0006338;chromatin remodeling;0.00309435508185638!GO:0042110;T cell activation;0.00309679829582855!GO:0003711;transcription elongation regulator activity;0.00311583329034976!GO:0007050;cell cycle arrest;0.00316503288278191!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00327563636236734!GO:0000228;nuclear chromosome;0.00327563636236734!GO:0051092;activation of NF-kappaB transcription factor;0.00332026539860246!GO:0051087;chaperone binding;0.00332356018611776!GO:0006497;protein amino acid lipidation;0.00338136214792774!GO:0006284;base-excision repair;0.00348278871828247!GO:0032508;DNA duplex unwinding;0.00351090343869775!GO:0032392;DNA geometric change;0.00351090343869775!GO:0048471;perinuclear region of cytoplasm;0.00359293425097933!GO:0016023;cytoplasmic membrane-bound vesicle;0.00367766975838883!GO:0043414;biopolymer methylation;0.00380277904200743!GO:0004177;aminopeptidase activity;0.00384284107019536!GO:0051920;peroxiredoxin activity;0.00388086119937603!GO:0031124;mRNA 3'-end processing;0.00388086119937603!GO:0030118;clathrin coat;0.00388582734173106!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00391597005020005!GO:0009165;nucleotide biosynthetic process;0.00391685102778842!GO:0042770;DNA damage response, signal transduction;0.00410016727072274!GO:0003714;transcription corepressor activity;0.00414628332241208!GO:0016859;cis-trans isomerase activity;0.00417938706098686!GO:0008022;protein C-terminus binding;0.00453940435335693!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00465379221730758!GO:0045454;cell redox homeostasis;0.00471264033122908!GO:0022890;inorganic cation transmembrane transporter activity;0.00477610674116232!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00483683893396335!GO:0043596;nuclear replication fork;0.00492244443358105!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00494800464869143!GO:0044452;nucleolar part;0.00504599022370064!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00509851696422191!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00509851696422191!GO:0000910;cytokinesis;0.00534954539876438!GO:0019783;small conjugating protein-specific protease activity;0.00542824011333196!GO:0031252;leading edge;0.0056133932481885!GO:0009889;regulation of biosynthetic process;0.00573988118802914!GO:0048468;cell development;0.00573988118802914!GO:0008033;tRNA processing;0.00580165427641288!GO:0004843;ubiquitin-specific protease activity;0.00602260783813208!GO:0006268;DNA unwinding during replication;0.00602260783813208!GO:0046822;regulation of nucleocytoplasmic transport;0.00612664704801297!GO:0004003;ATP-dependent DNA helicase activity;0.00631856344844108!GO:0051090;regulation of transcription factor activity;0.00653375287858529!GO:0008624;induction of apoptosis by extracellular signals;0.00656159273791444!GO:0009124;nucleoside monophosphate biosynthetic process;0.00659132159095165!GO:0009123;nucleoside monophosphate metabolic process;0.00659132159095165!GO:0000049;tRNA binding;0.00667658164506763!GO:0042393;histone binding;0.00671001759968542!GO:0043488;regulation of mRNA stability;0.00671001759968542!GO:0043487;regulation of RNA stability;0.00671001759968542!GO:0030518;steroid hormone receptor signaling pathway;0.00699334250739557!GO:0051251;positive regulation of lymphocyte activation;0.00700682603530367!GO:0016788;hydrolase activity, acting on ester bonds;0.00704672478924601!GO:0048487;beta-tubulin binding;0.00724314272398309!GO:0051789;response to protein stimulus;0.00732073485020031!GO:0006986;response to unfolded protein;0.00732073485020031!GO:0031123;RNA 3'-end processing;0.0073849922424257!GO:0030127;COPII vesicle coat;0.00741145636512671!GO:0012507;ER to Golgi transport vesicle membrane;0.00741145636512671!GO:0032200;telomere organization and biogenesis;0.00755400545025216!GO:0000723;telomere maintenance;0.00755400545025216!GO:0016584;nucleosome positioning;0.0076216224906103!GO:0030521;androgen receptor signaling pathway;0.00771204567263251!GO:0043621;protein self-association;0.00780995606088704!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00800759133301236!GO:0030663;COPI coated vesicle membrane;0.00810794762738398!GO:0030126;COPI vesicle coat;0.00810794762738398!GO:0016301;kinase activity;0.00828666414302383!GO:0030695;GTPase regulator activity;0.0085074814280325!GO:0046966;thyroid hormone receptor binding;0.0085074814280325!GO:0003746;translation elongation factor activity;0.00852385002818734!GO:0030134;ER to Golgi transport vesicle;0.00852385002818734!GO:0016605;PML body;0.00857329495144263!GO:0004221;ubiquitin thiolesterase activity;0.00872190696908789!GO:0051223;regulation of protein transport;0.00884990983210855!GO:0008047;enzyme activator activity;0.00889994843795223!GO:0006950;response to stress;0.00937098135308428!GO:0004722;protein serine/threonine phosphatase activity;0.00964188711109185!GO:0046914;transition metal ion binding;0.00989084164037699!GO:0000819;sister chromatid segregation;0.00991723016437215!GO:0030137;COPI-coated vesicle;0.00996116027773712!GO:0005774;vacuolar membrane;0.0103647101818947!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0105849717238597!GO:0043281;regulation of caspase activity;0.0106879286634046!GO:0005521;lamin binding;0.0106879286634046!GO:0035258;steroid hormone receptor binding;0.0107376187205908!GO:0000339;RNA cap binding;0.0107676266318048!GO:0009112;nucleobase metabolic process;0.0109066873985106!GO:0008637;apoptotic mitochondrial changes;0.0109120479359136!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0109733328568916!GO:0044438;microbody part;0.0110652852379521!GO:0044439;peroxisomal part;0.0110652852379521!GO:0016311;dephosphorylation;0.0110689768677811!GO:0042158;lipoprotein biosynthetic process;0.0112273259539111!GO:0051336;regulation of hydrolase activity;0.0112756396221252!GO:0005876;spindle microtubule;0.0114135161399123!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0114135161399123!GO:0031902;late endosome membrane;0.0114375324221536!GO:0006007;glucose catabolic process;0.0118287409329213!GO:0006355;regulation of transcription, DNA-dependent;0.0119163959079447!GO:0009116;nucleoside metabolic process;0.0121431913206174!GO:0004532;exoribonuclease activity;0.0121825797798503!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0121825797798503!GO:0006626;protein targeting to mitochondrion;0.0122523694356705!GO:0006506;GPI anchor biosynthetic process;0.012424633826303!GO:0042101;T cell receptor complex;0.0126065519958268!GO:0006376;mRNA splice site selection;0.0126065519958268!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0126065519958268!GO:0006505;GPI anchor metabolic process;0.0126330959603022!GO:0030880;RNA polymerase complex;0.0127033866485127!GO:0000070;mitotic sister chromatid segregation;0.0127688389950438!GO:0016272;prefoldin complex;0.0128056640763881!GO:0006839;mitochondrial transport;0.0131047128011995!GO:0008139;nuclear localization sequence binding;0.0131725897233395!GO:0005874;microtubule;0.0131960459486399!GO:0008287;protein serine/threonine phosphatase complex;0.0132034819856635!GO:0032940;secretion by cell;0.0133400910513311!GO:0009161;ribonucleoside monophosphate metabolic process;0.0136244535885645!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0136244535885645!GO:0016790;thiolester hydrolase activity;0.0136244535885645!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0138471900360947!GO:0045045;secretory pathway;0.0140323759186731!GO:0044454;nuclear chromosome part;0.0140782235625183!GO:0019901;protein kinase binding;0.014086018766609!GO:0000059;protein import into nucleus, docking;0.0141269146700318!GO:0006144;purine base metabolic process;0.0145810092593207!GO:0004197;cysteine-type endopeptidase activity;0.0145821402604984!GO:0016791;phosphoric monoester hydrolase activity;0.0146352044787592!GO:0031570;DNA integrity checkpoint;0.0147669645276166!GO:0005669;transcription factor TFIID complex;0.0147887251725278!GO:0000781;chromosome, telomeric region;0.0147974077594883!GO:0005070;SH3/SH2 adaptor activity;0.0148337365330116!GO:0000792;heterochromatin;0.0149364770020191!GO:0008408;3'-5' exonuclease activity;0.015139322326109!GO:0030867;rough endoplasmic reticulum membrane;0.0151435018521028!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0151545790343311!GO:0031903;microbody membrane;0.0153013187660722!GO:0005778;peroxisomal membrane;0.0153013187660722!GO:0019079;viral genome replication;0.0153129778805138!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0154890114116431!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0156538288858333!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0160444352423475!GO:0030522;intracellular receptor-mediated signaling pathway;0.0163644567224994!GO:0005788;endoplasmic reticulum lumen;0.016549235770777!GO:0046649;lymphocyte activation;0.0168286341293277!GO:0008017;microtubule binding;0.0168336674284918!GO:0043601;nuclear replisome;0.01694216540454!GO:0030894;replisome;0.01694216540454!GO:0051249;regulation of lymphocyte activation;0.01694216540454!GO:0033116;ER-Golgi intermediate compartment membrane;0.01694216540454!GO:0050865;regulation of cell activation;0.0171889140667906!GO:0040029;regulation of gene expression, epigenetic;0.0172408091445793!GO:0005765;lysosomal membrane;0.0175314634900297!GO:0005869;dynactin complex;0.0176031988104223!GO:0000152;nuclear ubiquitin ligase complex;0.0177031760965557!GO:0051539;4 iron, 4 sulfur cluster binding;0.017900574441906!GO:0051881;regulation of mitochondrial membrane potential;0.018328546636741!GO:0006378;mRNA polyadenylation;0.0183617582340008!GO:0030125;clathrin vesicle coat;0.0184385441238569!GO:0030665;clathrin coated vesicle membrane;0.0184385441238569!GO:0044450;microtubule organizing center part;0.0185773285135285!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0186619511890404!GO:0015002;heme-copper terminal oxidase activity;0.0186619511890404!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0186619511890404!GO:0004129;cytochrome-c oxidase activity;0.0186619511890404!GO:0019900;kinase binding;0.0186986748256079!GO:0007034;vacuolar transport;0.0187146288256009!GO:0000725;recombinational repair;0.018720714834126!GO:0000724;double-strand break repair via homologous recombination;0.018720714834126!GO:0018193;peptidyl-amino acid modification;0.0194378564188354!GO:0022406;membrane docking;0.0194384512385537!GO:0048278;vesicle docking;0.0194384512385537!GO:0000738;DNA catabolic process, exonucleolytic;0.0197108995817458!GO:0008276;protein methyltransferase activity;0.0197764867948677!GO:0046467;membrane lipid biosynthetic process;0.0200410446501071!GO:0005083;small GTPase regulator activity;0.020414141901262!GO:0000018;regulation of DNA recombination;0.020428943866851!GO:0051338;regulation of transferase activity;0.0208494923700243!GO:0044437;vacuolar part;0.0209359844768838!GO:0006914;autophagy;0.0211003134574692!GO:0019210;kinase inhibitor activity;0.0211117959447896!GO:0004576;oligosaccharyl transferase activity;0.0212919616116265!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0212919616116265!GO:0015980;energy derivation by oxidation of organic compounds;0.0213305020864226!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0215273957078881!GO:0000428;DNA-directed RNA polymerase complex;0.0215273957078881!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0216128673540181!GO:0043022;ribosome binding;0.0217113230637002!GO:0005832;chaperonin-containing T-complex;0.0221841299449928!GO:0051053;negative regulation of DNA metabolic process;0.0224875664232369!GO:0016569;covalent chromatin modification;0.0226131561575641!GO:0032981;mitochondrial respiratory chain complex I assembly;0.022781752016602!GO:0010257;NADH dehydrogenase complex assembly;0.022781752016602!GO:0033108;mitochondrial respiratory chain complex assembly;0.022781752016602!GO:0016763;transferase activity, transferring pentosyl groups;0.0231385917789741!GO:0045936;negative regulation of phosphate metabolic process;0.0233416362872436!GO:0009966;regulation of signal transduction;0.0236747162767365!GO:0051235;maintenance of localization;0.0237681974083446!GO:0006275;regulation of DNA replication;0.023857164983269!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0239637779676139!GO:0006904;vesicle docking during exocytosis;0.0240057701208318!GO:0007259;JAK-STAT cascade;0.0242291349465102!GO:0019058;viral infectious cycle;0.0244299058435738!GO:0031625;ubiquitin protein ligase binding;0.0245516381861603!GO:0006091;generation of precursor metabolites and energy;0.0248504821907055!GO:0004721;phosphoprotein phosphatase activity;0.0248504821907055!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0248504821907055!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0248504821907055!GO:0009126;purine nucleoside monophosphate metabolic process;0.0248504821907055!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0248504821907055!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0248504821907055!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0248504821907055!GO:0051098;regulation of binding;0.0249841113273495!GO:0000726;non-recombinational repair;0.0253055978445456!GO:0008250;oligosaccharyl transferase complex;0.0254072543215691!GO:0006595;polyamine metabolic process;0.0254424978643338!GO:0004860;protein kinase inhibitor activity;0.0254424978643338!GO:0048524;positive regulation of viral reproduction;0.0256534387847912!GO:0016860;intramolecular oxidoreductase activity;0.0257700646386666!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0263096463220935!GO:0046365;monosaccharide catabolic process;0.0264821105968092!GO:0008629;induction of apoptosis by intracellular signals;0.026657278987906!GO:0042608;T cell receptor binding;0.0270058519684134!GO:0008097;5S rRNA binding;0.0274691739913249!GO:0030119;AP-type membrane coat adaptor complex;0.028146670899012!GO:0003725;double-stranded RNA binding;0.0281577341065557!GO:0030133;transport vesicle;0.0285740830950809!GO:0046982;protein heterodimerization activity;0.0286990582540701!GO:0017134;fibroblast growth factor binding;0.0293862873473804!GO:0019904;protein domain specific binding;0.0296008134214793!GO:0006919;caspase activation;0.0296553156210596!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0296553156210596!GO:0033673;negative regulation of kinase activity;0.0296553156210596!GO:0006469;negative regulation of protein kinase activity;0.0296553156210596!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0297245436355075!GO:0043549;regulation of kinase activity;0.0297245436355075!GO:0008320;protein transmembrane transporter activity;0.0298513367240488!GO:0000077;DNA damage checkpoint;0.0301160539683573!GO:0022411;cellular component disassembly;0.0311659223228787!GO:0030833;regulation of actin filament polymerization;0.0314462314817366!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0314462314817366!GO:0005665;DNA-directed RNA polymerase II, core complex;0.031833493260702!GO:0051540;metal cluster binding;0.031833493260702!GO:0051536;iron-sulfur cluster binding;0.031833493260702!GO:0050852;T cell receptor signaling pathway;0.0319767050097437!GO:0005784;translocon complex;0.0322892729750909!GO:0005791;rough endoplasmic reticulum;0.0323295460994392!GO:0005095;GTPase inhibitor activity;0.0323295460994392!GO:0006270;DNA replication initiation;0.0325924646151957!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0328757767213709!GO:0008213;protein amino acid alkylation;0.0330044386510031!GO:0006479;protein amino acid methylation;0.0330044386510031!GO:0004659;prenyltransferase activity;0.0333425954136614!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0333425954136614!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0333425954136614!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0333425954136614!GO:0046426;negative regulation of JAK-STAT cascade;0.0338771005735993!GO:0000793;condensed chromosome;0.0342896402559273!GO:0030131;clathrin adaptor complex;0.0343014756905977!GO:0030176;integral to endoplasmic reticulum membrane;0.0345470673066403!GO:0000178;exosome (RNase complex);0.0346183722130779!GO:0031577;spindle checkpoint;0.0346369020938584!GO:0046164;alcohol catabolic process;0.0347042047916112!GO:0051348;negative regulation of transferase activity;0.0347124823569517!GO:0030132;clathrin coat of coated pit;0.0347733152328724!GO:0003887;DNA-directed DNA polymerase activity;0.0350690873001232!GO:0006266;DNA ligation;0.0351379626130876!GO:0046483;heterocycle metabolic process;0.0352522834104139!GO:0022884;macromolecule transmembrane transporter activity;0.0356752317268121!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0356752317268121!GO:0045792;negative regulation of cell size;0.036112771403669!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0361374859858299!GO:0045892;negative regulation of transcription, DNA-dependent;0.0361623495602573!GO:0050681;androgen receptor binding;0.0371761711184886!GO:0050870;positive regulation of T cell activation;0.0374094737261004!GO:0008538;proteasome activator activity;0.0374268547910616!GO:0008180;signalosome;0.0382303769325608!GO:0051452;cellular pH reduction;0.0382534992546908!GO:0051453;regulation of cellular pH;0.0382534992546908!GO:0045851;pH reduction;0.0382534992546908!GO:0030041;actin filament polymerization;0.0388827769553524!GO:0005092;GDP-dissociation inhibitor activity;0.0388929652328172!GO:0050811;GABA receptor binding;0.0393852323230308!GO:0005096;GTPase activator activity;0.0405270555693131!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0405582410170796!GO:0019320;hexose catabolic process;0.0407530653801699!GO:0007021;tubulin folding;0.0410475381833448!GO:0002378;immunoglobulin biosynthetic process;0.0411553936454933!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0411553936454933!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0411553936454933!GO:0006406;mRNA export from nucleus;0.0416478883454848!GO:0016570;histone modification;0.0421743150806551!GO:0005777;peroxisome;0.0422736777229644!GO:0042579;microbody;0.0422736777229644!GO:0030258;lipid modification;0.0423301039305599!GO:0000123;histone acetyltransferase complex;0.0428099189801253!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0429711488697483!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0429711488697483!GO:0046979;TAP2 binding;0.0433423815562458!GO:0046977;TAP binding;0.0433423815562458!GO:0046978;TAP1 binding;0.0433423815562458!GO:0050863;regulation of T cell activation;0.0436671954547347!GO:0030308;negative regulation of cell growth;0.0436671954547347!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0446251466616942!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0446251466616942!GO:0051059;NF-kappaB binding;0.0446619459287054!GO:0006516;glycoprotein catabolic process;0.0447861342780708!GO:0001836;release of cytochrome c from mitochondria;0.0453263051180246!GO:0042326;negative regulation of phosphorylation;0.0453346013654336!GO:0051091;positive regulation of transcription factor activity;0.0454432001605753!GO:0030332;cyclin binding;0.0465915282026773!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0468014807537974!GO:0031371;ubiquitin conjugating enzyme complex;0.0470022734761387!GO:0019976;interleukin-2 binding;0.0473272847614655!GO:0004911;interleukin-2 receptor activity;0.0473272847614655!GO:0045815;positive regulation of gene expression, epigenetic;0.0475660377719679!GO:0006470;protein amino acid dephosphorylation;0.0476348143716271!GO:0000096;sulfur amino acid metabolic process;0.0476348143716271!GO:0007017;microtubule-based process;0.0476348143716271!GO:0045859;regulation of protein kinase activity;0.0476348143716271!GO:0019318;hexose metabolic process;0.0478778981595671!GO:0046983;protein dimerization activity;0.0478778981595671!GO:0005996;monosaccharide metabolic process;0.0480590537221135!GO:0043284;biopolymer biosynthetic process;0.048124673121809!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.048581529988135!GO:0008625;induction of apoptosis via death domain receptors;0.0485936565088789!GO:0006984;ER-nuclear signaling pathway;0.0491418227826723!GO:0043631;RNA polyadenylation;0.0493383290444089!GO:0006096;glycolysis;0.0498124958843946!GO:0015923;mannosidase activity;0.0498124958843946
 |sample_id=11792
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=ELF1,2,4:2.4225797992;CDX1,2,4:2.36152109406;PAX3,7:2.02955706361;TLX2:1.97495991439;RUNX1..3:1.80823656688;RORA:1.71028300915;PAX4:1.44400919428;ETS1,2:1.38177498649;POU1F1:1.32997559008;PDX1:1.26214604126;SPI1:1.2572236128;STAT1,3:1.25025715905;GATA6:1.24581861593;E2F1..5:1.24316591859;ZBTB16:1.14427908245;DMAP1_NCOR{1,2}_SMARC:1.13162252043;IKZF2:0.995564317624;ELK1,4_GABP{A,B1}:0.99351125788;IRF1,2:0.934219235629;T:0.919102345962;SPIB:0.891876347594;YY1:0.870388825265;PBX1:0.810769520764;NFY{A,B,C}:0.77872957115;FOXA2:0.743621136257;PITX1..3:0.723150673655;FOX{F1,F2,J1}:0.718544149635;BREu{core}:0.716569585125;CRX:0.699200147735;POU2F1..3:0.622188965876;LEF1_TCF7_TCF7L1,2:0.616154337024;TGIF1:0.61105031882;FOXP1:0.593509608725;NKX6-1,2:0.592124060955;MYB:0.573887419428;NKX2-2,8:0.55223844389;PAX8:0.547027498561;NANOG{mouse}:0.453961723694;IRF7:0.434031238455;MYOD1:0.429398501394;FOXO1,3,4:0.407153723862;NKX3-1:0.398875009398;NRF1:0.341411297461;SNAI1..3:0.324741621181;FOXM1:0.319624909439;BPTF:0.306981226276;ZEB1:0.299655584488;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.275572082126;OCT4_SOX2{dimer}:0.265882398857;RFX2..5_RFXANK_RFXAP:0.261777491931;ATF5_CREB3:0.246975281701;CREB1:0.243028612516;LMO2:0.218497393815;NR5A1,2:0.208572686042;STAT5{A,B}:0.183060426671;ZNF143:0.162951928202;SREBF1,2:0.156525542056;SPZ1:0.152270212342;FOX{D1,D2}:0.151274635406;AIRE:0.142274490519;CUX2:0.124698292138;HMX1:0.118238225192;HOX{A6,A7,B6,B7}:0.0982188030934;POU3F1..4:0.0978713199498;STAT2,4,6:0.0735893297243;FOX{I1,J2}:0.065328192823;SOX5:0.0312451627311;ALX1:0.00495541391476;FOXN1:-0.0230689976995;NFKB1_REL_RELA:-0.0409055225295;GFI1:-0.0560383240444;NR3C1:-0.0736799319077;PAX2:-0.0903577577763;GCM1,2:-0.0910314572599;HES1:-0.0933115389313;NKX2-1,4:-0.117062127864;JUN:-0.119819618523;AHR_ARNT_ARNT2:-0.141000178831;TFDP1:-0.155468566125;EP300:-0.160507880565;PAX6:-0.164526037412;HNF4A_NR2F1,2:-0.181668219889;TOPORS:-0.194332227294;PRRX1,2:-0.212845912842;NFATC1..3:-0.227735659826;TAL1_TCF{3,4,12}:-0.23318023217;NFIL3:-0.236948116103;FOXD3:-0.245243066725;RXRA_VDR{dimer}:-0.26017118765;SMAD1..7,9:-0.272122435622;GLI1..3:-0.274660697923;AR:-0.288301781438;ZNF148:-0.296491567897;NFE2L1:-0.309885736413;ATF4:-0.318511990286;HNF1A:-0.349609679472;NR1H4:-0.379115776318;RREB1:-0.388351379183;EVI1:-0.389934137742;HAND1,2:-0.415326012888;ZNF423:-0.426949778269;POU5F1:-0.428440522956;MYFfamily:-0.431128257173;SOX2:-0.433534868007;FOXQ1:-0.438131373726;HMGA1,2:-0.439580113102;ARID5B:-0.440268658138;VSX1,2:-0.464111085295;SOX{8,9,10}:-0.475945155446;ATF2:-0.478694303029;HOXA9_MEIS1:-0.486701938644;ADNP_IRX_SIX_ZHX:-0.489684832136;NKX2-3_NKX2-5:-0.510251975502;ZNF384:-0.524965854372;FOXP3:-0.526428299005;RBPJ:-0.548466043177;PPARG:-0.553919853902;ATF6:-0.566257832951;RFX1:-0.566496712603;BACH2:-0.570455727829;ZNF238:-0.571437266393;SRF:-0.574481660626;NFIX:-0.576535207054;NFE2L2:-0.581957109905;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.589400106455;CEBPA,B_DDIT3:-0.593482304493;FOS_FOS{B,L1}_JUN{B,D}:-0.604473419897;TFCP2:-0.621479883174;NFE2:-0.628712506912;TFAP4:-0.63240555448;ESR1:-0.64814802849;FOSL2:-0.696267014346;HLF:-0.711557056722;NHLH1,2:-0.712677301859;TP53:-0.737054020332;HBP1_HMGB_SSRP1_UBTF:-0.75193336092;NANOG:-0.754396555554;PAX5:-0.784863457083;UFEwm:-0.792441220222;REST:-0.794309858934;ALX4:-0.802971727954;ESRRA:-0.807918499612;DBP:-0.815819468543;ONECUT1,2:-0.827904147989;XCPE1{core}:-0.883599924917;LHX3,4:-0.889661510277;MEF2{A,B,C,D}:-0.896761673748;ZBTB6:-0.90936508934;CDC5L:-0.934340491975;MED-1{core}:-0.939824504668;HOX{A5,B5}:-0.973799782254;MZF1:-0.974574666273;MYBL2:-0.984708508093;TBX4,5:-1.03093035664;GFI1B:-1.04419037794;SOX17:-1.05084037165;MTE{core}:-1.08458474303;ZFP161:-1.11059656206;NR6A1:-1.11110666689;GATA4:-1.11312469188;KLF4:-1.11418270695;MAFB:-1.12147562741;HIF1A:-1.13885659483;EBF1:-1.14250238556;MAZ:-1.1593502465;PRDM1:-1.1900718137;GTF2I:-1.21018412467;HOX{A4,D4}:-1.22547153947;HSF1,2:-1.24396222762;EGR1..3:-1.26478206479;MTF1:-1.2657690984;POU6F1:-1.27340077154;TEF:-1.31277077181;GZF1:-1.32634814926;NKX3-2:-1.32664433237;EN1,2:-1.38652391648;GTF2A1,2:-1.39009122427;TFAP2B:-1.43396329261;bHLH_family:-1.44501274323;PATZ1:-1.44676798902;HIC1:-1.45503082563;TBP:-1.46404935128;ZIC1..3:-1.47356279401;RXR{A,B,G}:-1.58045686094;TFAP2{A,C}:-1.58151443374;TEAD1:-1.58979762693;SP1:-1.64935541454;TLX1..3_NFIC{dimer}:-1.7761799137;XBP1:-1.79941677996;PAX1,9:-1.80675293102;IKZF1:-1.98534804817;FOXL1:-2.03566617497
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11792-124C1;search_select_hide=table117:FF:11792-124C1
 }}

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FF:11792-124C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0