FF:749-24G1: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	heart, neonate N10
Species:	Mouse (Mus musculus)
Library ID:	CNhs11118
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	10 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005988

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11118		CAGE		DRX008981		DRR009855

Accession ID Mm9

Library id		BAM		CTSS
CNhs11118		DRZ001280		DRZ002663

Accession ID Mm10

Library id		BAM		CTSS
CNhs11118		DRZ012630		DRZ014013

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11118

0	0
1	0
10	0.735
100	0
1000	0.637
1001	0.707
1002	0.223
1003	0.175
1004	0
1005	-0.0389
1006	0.538
1007	0.037
1008	0
1009	0.204
101	-0.0447
1010	0
1011	-0.0394
1012	0.066
1013	-0.0781
1014	0.126
1015	-0.0787
1016	0.0997
1017	0
1018	0
1019	0
102	0
1020	0
1021	-0.0487
1022	0.832
1023	0
1024	0.388
1025	0
1026	0
1027	0.066
1028	0
1029	0.377
103	0.228
1030	0
1031	0.14
1032	0.134
1033	-0.0752
1034	0
1035	0.666
1036	-0.166
1037	0
1038	0.144
1039	0.339
104	0
1040	0.117
1041	0.066

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11118

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.115
MA0003.1	MA0003.1	0.665
MA0004.1	MA0004.1	0.0824
MA0006.1	MA0006.1	0.203
MA0007.1	MA0007.1	0.616
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.717
MA0017.1	MA0017.1	0.834
MA0018.2	MA0018.2	0.00703
MA0019.1	MA0019.1	0.507
MA0024.1	MA0024.1	0.0285
MA0025.1	MA0025.1	0.385
MA0027.1	MA0027.1	0.356
MA0028.1	MA0028.1	0.0709
MA0029.1	MA0029.1	0.942
MA0030.1	MA0030.1	0.216
MA0031.1	MA0031.1	0.255
MA0035.2	MA0035.2	0.176
MA0038.1	MA0038.1	0.777
MA0039.2	MA0039.2	0.122
MA0040.1	MA0040.1	0.16
MA0041.1	MA0041.1	0.276
MA0042.1	MA0042.1	0.489
MA0043.1	MA0043.1	0.0221
MA0046.1	MA0046.1	1.6527e-16
MA0047.2	MA0047.2	0.21
MA0048.1	MA0048.1	0.432
MA0050.1	MA0050.1	0.14
MA0051.1	MA0051.1	0.194
MA0052.1	MA0052.1	1.16072e-27
MA0055.1	MA0055.1	0.225
MA0057.1	MA0057.1	0.632
MA0058.1	MA0058.1	0.0463
MA0059.1	MA0059.1	0.363
MA0060.1	MA0060.1	8.40571e-11
MA0061.1	MA0061.1	0.933
MA0062.2	MA0062.2	4.63144e-6
MA0065.2	MA0065.2	0.146
MA0066.1	MA0066.1	0.388
MA0067.1	MA0067.1	0.277
MA0068.1	MA0068.1	0.363
MA0069.1	MA0069.1	0.193
MA0070.1	MA0070.1	0.65
MA0071.1	MA0071.1	0.0512
MA0072.1	MA0072.1	0.829
MA0073.1	MA0073.1	0.966
MA0074.1	MA0074.1	0.151
MA0076.1	MA0076.1	0.0022
MA0077.1	MA0077.1	0.674
MA0078.1	MA0078.1	0.811
MA0079.2	MA0079.2	0.209
MA0080.2	MA0080.2	0.00175
MA0081.1	MA0081.1	0.772
MA0083.1	MA0083.1	5.76585e-10
MA0084.1	MA0084.1	0.565
MA0087.1	MA0087.1	0.816
MA0088.1	MA0088.1	0.717
MA0090.1	MA0090.1	0.00198
MA0091.1	MA0091.1	0.438
MA0092.1	MA0092.1	0.428
MA0093.1	MA0093.1	0.0591
MA0099.2	MA0099.2	0.00198
MA0100.1	MA0100.1	0.0416
MA0101.1	MA0101.1	0.429
MA0102.2	MA0102.2	0.0134
MA0103.1	MA0103.1	0.00117
MA0104.2	MA0104.2	0.041
MA0105.1	MA0105.1	0.168
MA0106.1	MA0106.1	0.091
MA0107.1	MA0107.1	0.729
MA0108.2	MA0108.2	0.242
MA0111.1	MA0111.1	0.973
MA0112.2	MA0112.2	1.29909e-6
MA0113.1	MA0113.1	0.725
MA0114.1	MA0114.1	0.53
MA0115.1	MA0115.1	0.449
MA0116.1	MA0116.1	0.413
MA0117.1	MA0117.1	0.97
MA0119.1	MA0119.1	0.0655
MA0122.1	MA0122.1	0.203
MA0124.1	MA0124.1	0.841
MA0125.1	MA0125.1	0.307
MA0131.1	MA0131.1	0.449
MA0135.1	MA0135.1	0.0266
MA0136.1	MA0136.1	7.92015e-5
MA0137.2	MA0137.2	0.0336
MA0138.2	MA0138.2	0.387
MA0139.1	MA0139.1	0.574
MA0140.1	MA0140.1	0.162
MA0141.1	MA0141.1	2.41132e-9
MA0142.1	MA0142.1	0.243
MA0143.1	MA0143.1	0.546
MA0144.1	MA0144.1	0.701
MA0145.1	MA0145.1	0.226
MA0146.1	MA0146.1	0.215
MA0147.1	MA0147.1	0.117
MA0148.1	MA0148.1	0.498
MA0149.1	MA0149.1	0.753
MA0150.1	MA0150.1	0.861
MA0152.1	MA0152.1	0.0574
MA0153.1	MA0153.1	4.77662e-11
MA0154.1	MA0154.1	0.0119
MA0155.1	MA0155.1	0.243
MA0156.1	MA0156.1	1.19203e-5
MA0157.1	MA0157.1	0.699
MA0159.1	MA0159.1	6.06737e-5
MA0160.1	MA0160.1	2.47769e-4
MA0162.1	MA0162.1	0.0688
MA0163.1	MA0163.1	0.0474
MA0164.1	MA0164.1	0.326
MA0258.1	MA0258.1	0.0022
MA0259.1	MA0259.1	0.641

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11118

Novel motif	Logo	P-value
1	1	0.0422
10	10	0.285
100	100	0.558
101	101	0.714
102	102	0.938
103	103	0.532
104	104	0.852
105	105	0.162
106	106	0.114
107	107	0.0833
108	108	0.966
109	109	0.286
11	11	0.315
110	110	0.0881
111	111	0.109
112	112	0.996
113	113	0.703
114	114	0.239
115	115	0.99
116	116	0.818
117	117	0.571
118	118	0.602
119	119	0.268
12	12	0.66
120	120	0.308
121	121	0.519
122	122	0.466
123	123	0.69
124	124	0.713
125	125	0.693
126	126	0.385
127	127	0.166
128	128	0.612
129	129	0.227
13	13	3.16967e-4
130	130	0.442
131	131	0.379
132	132	0.89
133	133	0.231
134	134	0.616
135	135	0.923
136	136	0.029
137	137	0.273
138	138	0.074
139	139	0.0908
14	14	0.328
140	140	0.182
141	141	0.836
142	142	0.577
143	143	0.641
144	144	0.239
145	145	0.274
146	146	0.68
147	147	0.696
148	148	0.252
149	149	0.0669
15	15	0.672
150	150	0.252
151	151	0.505
152	152	0.276
153	153	0.268
154	154	0.298
155	155	0.149
156	156	6.31452e-13
157	157	0.684
158	158	0.09
159	159	0.0199
160	160	0.111
161	161	0.98
162	162	0.707
163	163	0.46
164	164	0.355
165	165	0.0195
166	166	0.335
167	167	0.585
168	168	0.489
169	169	4.31902e-5
17	17	0.238
18	18	0.261
19	19	0.015
2	2	0.859
20	20	0.924
21	21	0.551
22	22	0.0897
23	23	0.879
24	24	0.7
25	25	0.853
26	26	0.019
27	27	0.602
28	28	0.765
29	29	0.942
3	3	0.185
30	30	0.19
31	31	0.496
32	32	0.687
33	33	0.612
34	34	0.309
35	35	0.751
36	36	0.224
37	37	0.0117
38	38	0.843
39	39	0.406
4	4	0.331
40	40	0.0856
41	41	0.807
42	42	0.762
43	43	0.136
44	44	0.95
45	45	0.836
46	46	0.411
47	47	0.475
48	48	0.374
49	49	0.104
5	5	0.108
50	50	0.725
51	51	0.536
52	52	0.434
53	53	0.985
54	54	0.652
55	55	0.311
56	56	0.538
57	57	0.182
58	58	0.413
59	59	0.0584
6	6	0.161
60	60	0.195
61	61	0.562
62	62	0.431
63	63	0.165
64	64	0.857
65	65	0.935
66	66	0.146
67	67	0.705
68	68	0.823
69	69	0.248
7	7	0.0684
70	70	0.872
71	71	0.0457
72	72	0.399
73	73	0.124
74	74	0.341
75	75	0.706
76	76	0.497
77	77	0.422
78	78	0.0562
79	79	0.886
8	8	0.416
80	80	0.0589
81	81	0.969
82	82	0.173
83	83	0.668
84	84	0.81
85	85	0.0256
86	86	0.861
87	87	7.75832e-6
88	88	0.54
89	89	0.0804
9	9	0.112
90	90	0.489
91	91	0.143
92	92	0.207
93	93	0.665
94	94	0.309
95	95	0.433
96	96	0.333
97	97	0.318
98	98	0.563
99	99	0.741

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11118

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011414 mouse heart- neonate N10 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000305 (mouse neonate N10 sample)
0011414 (mouse heart- neonate N10 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00005988
+|accession_numbers=CAGE;DRX008981;DRR009855;DRZ001280;DRZ002663;DRZ012630;DRZ014013
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000305,FF:0011414
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.30!199.96!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!1.82!65.34!Nkx2-5;;chr5:77543897..77543911,-!p2@Hopx!1.80!115.57!Hopx;;chr14:63864056..63864102,-!p1@Gata4!1.72!87.34!Gata4;;chr8:59799772..59799789,+!p1@Hand2!1.61!109.34!Hand2;;chr6:97879817..97879857,+!p2@Mitf!1.61!39.56!Mitf;;chr17:14011485..14011507,+!p2@Mllt4!1.51!31.52!Mllt4;;chr2:120365588..120365602,-!p2@Zfp106!1.47!46.62!Zfp106;;chr5:138187775..138187845,+!p7@Tsc22d4!1.43!35.30!Tsc22d4;;chr1:169548377..169548430,+!p1@Rxrg!1.41!24.95!Rxrg;;chr10:22539932..22539956,-!p1@Tcf21!1.32!52.53!Tcf21;;chr11:101755669..101755686,-!p1@Meox1!1.30!33.82!Meox1;;chr5:120285144..120285160,+!p1@Tbx5!1.28!17.89!Tbx5;;chr5:77544108..77544119,-!p7@Hopx!1.25!16.58!Hopx;;chr12:37835141..37835194,+!p1@Meox2!1.18!44.00!Meox2;;chr16:43363190..43363242,+!p2@Zbtb20!1.18!43.18!Zbtb20;;chr5:77524250..77524300,-!p1@Hopx!1.14!254.13!Hopx;;chr5:77544170..77544181,-!p6@Hopx!1.13!12.48!Hopx;;chr16:43363152..43363186,+!p3@Zbtb20!1.12!27.74!Zbtb20;;chr7:119885539..119885574,+!p3@Tead1!1.11!11.82!Tead1;;chr14:63890491..63890516,-!p2@Gata4!1.08!11.00!Gata4;;chr14:63890459..63890484,-!p4@Gata4!1.07!10.67!Gata4;;chr14:64562503..64562524,+!p1@Sox7!1.05!60.09!Sox7;;chr2:151969288..151969294,+!p1@Tcf15!1.04!15.60!Tcf15;;chr13:73397958..73397994,+!p1@Irx4!1.04!9.85!Irx4;;chr16:43619101..43619151,+!p6@Zbtb20!1.02!23.15!Zbtb20;;chr17:14011529..14011544,+!p7@Mllt4!1.01!9.19!Mllt4;;chr5:77543935..77543947,-!p4@Hopx!1.01!9.19!Hopx;;chr5:24107779..24107825,-!p1@Smarcd3!0.99!59.59!Smarcd3;;chr11:70043257..70043263,-!p1@Bcl6b!0.99!15.27!Bcl6b;;chr9:32443818..32443854,+!p2@Ets1!0.96!37.10!Ets1;;chr9:87626083..87626108,-!p1@Tbx18!0.96!18.22!Tbx18;;chr15:85566184..85566238,+!p1@Ppara!0.96!12.31!Ppara;;chr1:92895299..92895373,+!p2@Lrrfip1!0.95!169.91!Lrrfip1;;chr5:20387850..20387869,-!p1@Phtf2!0.95!83.07!Phtf2;;chr14:63890660..63890687,-!p7@Gata4!0.95!7.88!Gata4;;chr17:14011545..14011564,+!p6@Mllt4!0.93!7.55!Mllt4;;chr18:11052642..11052659,+!p1@Gata6!0.92!38.25!Gata6;;chr12:37835203..37835218,+!p3@Meox2!0.88!7.88!Meox2;;chr1:189432907..189432926,+!p3@Esrrg!0.88!6.57!Esrrg;;chr4:150482563..150482655,-!p2@Camta1!0.87!24.30!Camta1;;chr11:96690797..96690813,-!p1@Nfe2l1!0.86!128.05!Nfe2l1;;chr18:11052485..11052508,+!p2@Gata6!0.86!18.22!Gata6;;chr4:133109285..133109308,+!p1@Nr0b2!0.86!6.24!Nr0b2;;chr4:120488308..120488366,-!p1@Nfyc!0.85!37.43!Nfyc;;chr16:43619057..43619078,+!p8@Zbtb20!0.85!12.97!Zbtb20;;chr16:95680889..95680991,-!p1@Erg!0.84!51.38!Erg;;chr4:148178559..148178603,+!p1@Casz1!0.84!17.73!Casz1;;chr5:120285130..120285141,+!p3@Tbx5!0.84!5.91!Tbx5;;chr5:138199361..138199441,+!p2@Tsc22d4!0.82!11.00!Tsc22d4;;chr4:122911086..122911112,+!p1@Heyl!0.81!68.62!Heyl;;chr18:3281034..3281104,-!p1@Crem!0.81!41.37!Crem;;chr11:96690779..96690790,-!p3@Nfe2l1!0.81!13.95!Nfe2l1;;chr4:135840573..135840601,+!p1@Zfp46!0.79!43.83!Zfp46;;chr2:152758901..152758925,-!p1@Foxs1!0.79!24.63!Foxs1;;chr8:94325814..94325839,-!p2@Irx3!0.79!11.49!Irx3;;chr15:40486566..40486600,+!p1@Zfpm2!0.78!32.01!Zfpm2;;chr2:168415815..168415872,-!p1@Nfatc2!0.78!29.88!Nfatc2;;chr8:94325321..94325366,-!p1@Irx3!0.78!13.13!Irx3;;chr14:63890691..63890718,-!p8@Gata4!0.78!5.09!Gata4;;chr5:135582751..135582788,+!p1@Mlxipl!0.77!21.51!Mlxipl;;chr5:77524231..77524245,-!p3@Hopx!0.77!12.97!Hopx;;chr5:77524304..77524315,-!p5@Hopx!0.77!10.84!Hopx;;chr5:120285161..120285176,+!p2@Tbx5!0.77!4.93!Tbx5;;chr12:37835248..37835260,+!p4@Meox2!0.77!4.93!Meox2;;chr16:43619156..43619171,+!p16@Zbtb20!0.76!6.40!Zbtb20;;chr12:37835120..37835133,+!p2@Meox2!0.75!6.90!Meox2;;chr13:64251414..64251425,-!p13@Zfp367!0.75!4.60!Zfp367;;chr1:191994550..191994623,-!p1@Prox1!0.74!34.31!Prox1;;chr2:181406327..181406350,-!p1@Sox18!0.73!151.20!Sox18;;chr10:62327990..62328025,-!p2@Tet1!0.73!7.22!Tet1;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.72!18.39!Ppp1r13l;;chr4:82151126..82151133,-!p8@Nfib!0.72!5.75!Nfib;;chr17:87153240..87153254,+!p1@Epas1!0.71!91.44!Epas1;;chr14:19071466..19071550,-!p1@Nr1d2!0.71!31.85!Nr1d2;;chr18:11052456..11052477,+!p3@Gata6!0.71!13.95!Gata6;;chr6:97879802..97879816,+!p5@Mitf!0.71!4.10!Mitf;;chr10:92773591..92773623,-!p1@Elk3!0.69!100.14!Elk3;;chr12:87702062..87702081,+!p4@Esrrb!0.69!3.94!Esrrb;;chr16:43363837..43363842,+!p11@Zbtb20!0.68!7.55!Zbtb20;;chr14:67853457..67853482,+!p2@Ebf2!0.68!5.58!Ebf2;;chr17:14011569..14011589,+!p8@Mllt4!0.68!3.78!Mllt4;;chr13:99954640..99954681,+!p1@Zfp366!0.67!15.27!Zfp366;;chr14:17407970..17408015,-!p2@Rarb!0.67!11.00!Rarb;;chr2:104966766..104966786,+!p1@Wt1!0.67!6.24!Wt1;;chr1:191993385..191993405,-!p3@Prox1!0.66!3.61!Prox1;;chr14:63890519..63890539,-!p3@Gata4!0.66!3.61!Gata4;;chr14:63864337..63864381,-!p6@Gata4!0.66!3.61!Gata4;;chr3:30408603..30408668,-!p1@Mecom!0.65!8.87!Mecom;;chr6:145814003..145814056,-!p1@Bhlhe41!0.64!11.00!Bhlhe41;;chr4:82151148..82151159,-!p5@Nfib!0.64!10.84!Nfib;;chr9:96653072..96653154,-!p1@Zbtb38!0.64!10.18!Zbtb38;;chr18:69752608..69752625,+!p17@Tcf4!0.64!4.10!Tcf4;;chr11:74981654..74981658,-!p1@Hic1!0.63!15.10!Hic1;;chr4:154010918..154010931,-!p1@Prdm16!0.63!11.00!Prdm16;;chr18:11052606..11052633,+!p4@Gata6!0.63!9.36!Gata6;;chr14:67853632..67853674,+!p3@Ebf2!0.63!4.10!Ebf2;;chr6:83299445..83299490,+!p1@Bola3!0.62!159.73!Bola3;;chr16:42907676..42907797,+!p1@Zbtb20!0.62!48.92!Zbtb20;;chr11:90252223..90252240,-!p1@Hlf!0.62!31.36!Hlf;;chr11:44431687..44431706,+!p2@Ebf1!0.62!17.24!Ebf1;;chr16:43364215..43364252,+!p14@Zbtb20!0.62!4.27!Zbtb20;;chr11:98636531..98636559,-!p1@Nr1d1!0.61!20.52!Nr1d1;;chr1:170362437..170362478,-!p5@Pbx1!0.61!11.00!Pbx1;;chr7:123174485..123174514,-!p6@Sox6!0.61!3.94!Sox6;;chr17:26978449..26978458,-!p3@Nkx2-5!0.61!3.12!Nkx2-5;;chr14:17408052..17408073,-!p5@Rarb!0.61!3.12!Rarb;;chr11:100720767..100720797,+!p4@Stat5a!0.61!3.12!Stat5a;;chr13:83663868..83663894,+!p2@Mef2c!0.60!51.55!Mef2c;;chr7:119822957..119822980,+!p2@Tead1!0.60!17.24!Tead1;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.60!6.24!Zbtb38;;chr1:189821714..189821761,+!p1@Esrrg!0.60!6.07!Esrrg;;chr7:74517982..74518012,-!p2@Mef2a!0.59!5.91!Mef2a;;chr8:94325847..94325869,-!p3@Irx3!0.59!5.09!Irx3;;chr10:62328047..62328076,-!p3@Tet1!0.59!4.76!Tet1;;chr8:94325273..94325288,-!p5@Irx3!0.59!3.78!Irx3;;chr4:97444471..97444514,+!p1@Nfia!0.58!92.43!Nfia;;chr18:69681439..69681456,+!p7@Tcf4!0.58!8.37!Tcf4;;chr17:26978521..26978536,-!p2@Nkx2-5!0.58!2.79!Nkx2-5;;chr1:189432881..189432903,+!p2@Esrrg!0.58!2.79!Esrrg;;chr7:74517658..74517731,-!p1@Mef2a!0.57!153.82!Mef2a;;chr3:94176733..94176794,+!p1@Rorc!0.57!25.61!Rorc;;chr17:87153440..87153451,+!p4@Epas1!0.57!6.24!Epas1;;chr3:30408674..30408716,-!p2@Mecom!0.57!4.93!Mecom;;chr17:87153028..87153049,+!p2@Epas1!0.56!67.31!Epas1;;chr2:77357622..77357704,-!p1@Zfp385b!0.56!8.21!Zfp385b;;chr9:96159147..96159204,+!p2@Tfdp2!0.56!5.58!Tfdp2;;chr4:135840623..135840632,+!p5@Zfp46!0.56!3.78!Zfp46;;chr7:123174606..123174636,-!p5@Sox6!0.56!3.61!Sox6;;chr6:53523358..53523388,+!p1@Creb5!0.55!38.42!Creb5;;chr5:20387832..20387841,-!p2@Phtf2!0.55!4.93!Phtf2;;chr13:83663902..83663927,+!p1@Mef2c!0.54!76.67!Mef2c;;chr18:69681483..69681514,+!p11@Tcf4!0.54!4.76!Tcf4;;chr7:4947625..4947634,-!p6@Zfp579!0.54!4.60!Zfp579;;chr14:67853425..67853454,+!p1@Ebf2!0.54!3.78!Ebf2;;chr12:37835219..37835230,+!p5@Meox2!0.54!2.46!Meox2;;chr11:101755710..101755715,-!p2@Meox1!0.54!2.46!Meox1;;chr9:121669118..121669179,+!p1@Zfp651!0.53!32.51!Zfp651;;chr8:87237732..87237745,-!p7@Nfix!0.53!4.27!Nfix;;chr12:9581262..9581282,+!p1@Osr1!0.52!36.12!Osr1;;chr12:84828663..84828679,-!p1@Dpf3!0.52!22.66!Dpf3;;chr11:23670750..23670789,-!p2@Rel!0.52!5.09!Rel;;chr4:151235776..151235788,-!p5@Camta1!0.52!4.60!Camta1;;chrX:103070746..103070764,-!p5@Atrx!0.52!3.94!Atrx;;chr9:63514630..63514652,-!p8@Smad3!0.52!2.30!Smad3;;chr14:17408022..17408043,-!p6@Rarb!0.52!2.30!Rarb;;chr13:73398004..73398017,+!p2@Irx4!0.52!2.30!Irx4;;chr8:74842952..74842970,+!p1@Klf2!0.51!199.96!Klf2;;chr19:6996243..6996293,-!p1@Esrra!0.51!32.34!Esrra;;chr14:98568971..98569025,-!p1@Dach1!0.51!22.49!Dach1;;chr16:42907554..42907591,+!p5@Zbtb20!0.51!6.73!Zbtb20;;chr7:144506077..144506128,-!p1@Ebf3!0.51!6.24!Ebf3;;chrX:103070960..103070973,-!p7@Atrx!0.51!3.28!Atrx;;chr8:94881872..94881887,+!p2@Irx5!0.51!2.46!Irx5;;chr4:151235807..151235870,-!p1@Camta1!0.50!46.62!Camta1;;chr1:4483679..4483695,-!p1@Sox17!0.50!12.81!Sox17;;chr18:69753108..69753139,+!p8@Tcf4!0.50!5.09!Tcf4;;chr11:52096066..52096081,-!p2@Tcf7!0.50!2.79!Tcf7;;chr15:85566051..85566080,+!p4@Ppara!0.50!2.63!Ppara;;chr18:69752638..69752665,+!p19@Tcf4!0.50!2.46!Tcf4;;chr4:97444446..97444470,+!p3@Nfia!0.49!26.43!Nfia;;chr3:95238432..95238455,+!p2@Arnt!0.49!15.76!Arnt;;chr13:64253718..64253763,-!p2@Zfp367!0.49!6.73!Zfp367;;chr7:119822915..119822936,+!p5@Tead1!0.49!3.94!Tead1;;chr10:62328027..62328038,-!p6@Tet1!0.49!2.63!Tet1;;chr7:52960555..52960662,+!p1@Dbp!0.48!22.82!Dbp;;chr17:47873985..47874056,+!p1@Tfeb!0.48!22.33!Tfeb;;chr18:69504195..69504213,+!p4@Tcf4!0.48!12.15!Tcf4;;chr17:87153462..87153473,+!p3@Epas1!0.48!9.85!Epas1;;chr5:125538737..125538781,-!p2@Ncor2!0.48!9.19!Ncor2;;chr13:99954688..99954710,+!p2@Zfp366!0.48!4.60!Zfp366;;chr2:35960919..35960954,-!p1@Lhx6!0.48!4.43!Lhx6;;chr7:123177377..123177409,-!p7@Sox6!0.48!2.79!Sox6;;chr18:69505414..69505465,+!p6@Tcf4!0.47!9.19!Tcf4;;chr18:69839537..69839544,+!p13@Tcf4!0.47!3.94!Tcf4;;chr18:5593564..5593584,+!p2@Zeb1!0.47!2.46!Zeb1;;chr12:87702380..87702394,+!p6@Esrrb!0.47!1.97!Esrrb;;chr4:154010882..154010889,-!p10@Prdm16!0.47!1.97!Prdm16;;chr4:82145196..82145229,-!p7@Nfib!0.47!1.97!Nfib;;chr8:79426176..79426275,+!p1@Nr3c2!0.46!12.64!Nr3c2;;chr11:18918820..18918831,-!p4@Meis1!0.46!4.27!Meis1;;chr17:51971960..51971979,-!p1@Satb1!0.46!2.79!Satb1;;chr4:82151653..82151706,-!p2@Nfib!0.45!70.76!Nfib;;chr4:97444012..97444045,+!p4@Nfia!0.45!19.04!Nfia;;chr18:14130694..14130697,-!p2@Zfp521!0.45!5.25!Zfp521;;chr9:68501522..68501538,+!p4@Rora!0.45!4.10!Rora;;chr16:43364258..43364270,+!p27@Zbtb20!0.45!1.81!Zbtb20;;chr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1;;chr12:39510042..39510069,+!p8@Etv1!0.17!0.49!Etv1;;chr2:104966983..104966990,+!p11@Wt1!0.17!0.49!Wt1;;chr2:104967357..104967379,+!p9@Wt1!0.17!0.49!Wt1;;chr2:104966465..104966479,+!p6@Wt1!0.17!0.49!Wt1;;chr2:168415791..168415802,-!p5@Nfatc2!0.17!0.49!Nfatc2;;chr6:115311308..115311317,+!p10@Pparg!0.17!0.49!Pparg;;chr6:83301243..83301258,+!p2@Bola3!0.17!0.49!Bola3;;chr6:6831986..6832007,-!p4@Dlx5!0.17!0.49!Dlx5;;chr19:23215616..23215627,+!p9@Klf9!0.17!0.49!Klf9;;chr18:69752864..69752875,+!p25@Tcf4!0.17!0.49!Tcf4;;chr18:5593345..5593349,+!p14@Zeb1!0.17!0.49!Zeb1;;chr18:69681413..69681424,+!p24@Tcf4!0.17!0.49!Tcf4;;chr16:43364103..43364130,+!p30@Zbtb20!0.17!0.49!Zbtb20;;chr3:66785181..66785199,-!p2@Shox2!0.17!0.49!Shox2;;chr3:29911926..29911942,-!p13@Mecom!0.17!0.49!Mecom;;chr3:29911808..29911833,-!p8@Mecom!0.17!0.49!Mecom;;chr4:44723559..44723593,-!p1@Pax5!0.17!0.49!Pax5;;chr3:94181427..94181449,+!p3@Rorc!0.17!0.49!Rorc;;chr4:153708892..153708904,-!p13@Prdm16!0.17!0.49!Prdm16;;chr2:77654767..77654784,-!p12@Zfp385b!0.17!0.49!Zfp385b;;chr4:114730288..114730306,+!p8@Tal1!0.17!0.49!Tal1;;chr4:119486980..119486993,+!p6@Hivep3!0.17!0.49!Hivep3;;chr2:77654793..77654805,-!p7@Zfp385b!0.17!0.49!Zfp385b;;chr4:44723520..44723544,-!p2@Pax5!0.17!0.49!Pax5;;chr3:94181376..94181403,+!p2@Rorc!0.17!0.49!Rorc;;chr11:90250894..90250916,-!p5@Hlf!0.17!0.49!Hlf;;chr11:90252108..90252134,-!p6@Hlf!0.17!0.49!Hlf;;chr11:69749347..69749356,+!p8@Ybx2!0.17!0.49!Ybx2;;chr10:67599527..67599530,-!p9@Arid5b!0.17!0.49!Arid5b;;chr11:58717647..58717659,-!p3@Zfp39!0.17!0.49!Zfp39;;chr11:98407234..98407259,-!p2@Ikzf3!0.17!0.49!Ikzf3;;chr11:98407142..98407159,-!p5@Ikzf3!0.17!0.49!Ikzf3;;chr5:3647838..3648009,-!p1@Gatad1!0.16!75.52!Gatad1;;chr9:122775056..122775117,-!p1@Zfp445!0.16!43.83!Zfp445;;chr4:118967105..118967123,-!p1@Ybx1!0.16!38.42!Ybx1;;chr16:95924005..95924042,+!p2@Ets2!0.16!22.66!Ets2;;chr7:17199897..17199955,-!p1@Grlf1!0.16!14.12!Grlf1;;chr6:72739185..72739232,-!p1@Tcf7l1!0.16!12.97!Tcf7l1;;chr2:37278415..37278478,-!p1@Rc3h2!0.16!11.00!Rc3h2;;chr10:79862134..79862173,-!p3@Mbd3!0.16!9.69!Mbd3;;chr7:28516392..28516416,+!p2@Zfp60!0.16!9.19!Zfp60;;chr7:25292331..25292421,+!p1@Zfp428!0.16!8.54!Zfp428;;chr5:104183219..104183236,+!p2@Aff1!0.16!8.21!Aff1;;chr1:133904670..133904731,+!p2@Elk4!0.16!6.07!Elk4;;chr13:67825201..67825277,-!p1@Zfp71-rs1!0.16!5.75!Zfp71-rs1;;chr2:72818978..72818997,-!p4@Sp3!0.16!4.93!Sp3;;chr9:96096665..96096699,+!p4@Tfdp2!0.16!3.61!Tfdp2;;chr18:39649534..39649569,-!p3@Nr3c1!0.16!3.45!Nr3c1;;chr2:160698288..160698358,-!p3@Zhx3!0.16!3.28!Zhx3;;chr11:49016816..49016846,+!p2@Zfp62!0.16!2.96!Zfp62;;chr15:81575602..81575618,+!p3@Zc3h7b!0.16!2.63!Zc3h7b;;chr5:138187181..138187192,+!p5@Tsc22d4!0.16!2.63!Tsc22d4;;chr4:102792072..102792091,+!p5@Mier1!0.16!2.63!Mier1;;chr8:81923398..81923409,-!p4@Smad1!0.16!2.46!Smad1;;chr10:85379814..85379844,-!p2@Prdm4!0.16!2.30!Prdm4;;chr10:126778916..126778974,-!p1@Gli1!0.16!2.13!Gli1;;chr17:47874123..47874156,+!p2@Tfeb!0.16!2.13!Tfeb;;chr2:148506935..148506954,+!p2@Gzf1!0.16!1.81!Gzf1;;chr13:58501849..58501853,-!p5@Hnrnpk!0.16!1.48!Hnrnpk;;chr17:25151251..25151279,-!p4@Cramp1l!0.16!1.48!Cramp1l;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.16!1.31!Hmga1;;chr16:30065394..30065398,+!p3@Hes1!0.16!0.99!Hes1;;chr5:104182928..104182942,+!p10@Aff1!0.16!0.99!Aff1;;chr6:52154386..52154407,-!p2@Hoxa5!0.16!0.82!Hoxa5;;chr16:43236133..43236154,+!p17@Zbtb20!0.16!0.66!Zbtb20;;chr11:98636373..98636387,-!p5@Nr1d1!0.16!0.66!Nr1d1;;chr11:100800621..100800633,-!p5@Stat3!0.16!0.66!Stat3;;chr6:124662297..124662371,+!p1@Phb2!0.15!251.83!Phb2;;chr4:135699731..135699747,+!p1@Id3!0.15!143.48!Id3;;chr8:47825107..47825145,+!p1@Irf2!0.15!51.06!Irf2;;chr5:107125549..107125605,-!p1@Zfp644!0.15!21.67!Zfp644;;chr12:4484016..4484074,-!p1@Ncoa1!0.15!20.36!Ncoa1;;chr2:160698721..160698745,-!p1@Zhx3!0.15!17.73!Zhx3;;chr12:77471524..77471607,+!p1@Zbtb1!0.15!15.92!Zbtb1;;chr9:20189534..20189590,-!p1@Zfp560!0.15!12.31!Zfp560;;chr5:138596922..138596968,-!p1@Zfp113!0.15!11.98!Zfp113;;chr3:32409487..32409563,+!p1@Zfp639!0.15!8.70!Zfp639;;chr9:69137716..69137744,+!p1@Rora!0.15!7.22!Rora;;chr13:67585161..67585205,-!p1@Zfp874b!0.15!5.91!Zfp874b;;chr1:170362335..170362356,-!p4@Pbx1!0.15!5.09!Pbx1;;chr19:5637501..5637517,+!p4@Rela!0.15!4.43!Rela;;chr18:74427833..74427862,+!p2@Mbd1!0.15!4.43!Mbd1;;chr14:19071567..19071612,-!p2@Nr1d2!0.15!4.10!Nr1d2;;chr17:24592183..24592202,-!p2@E4f1!0.15!3.78!E4f1;;chr2:152223881..152223933,-!p3@Sox12!0.15!3.45!Sox12;;chr3:95021799..95021840,-!p4@Gabpb2!0.15!3.12!Gabpb2;;chr17:45570631..45570658,-!p4@Cdc5l!0.15!2.96!Cdc5l;;chr4:97444616..97444631,+!p7@Nfia!0.15!2.79!Nfia;;chr5:130175949..130175975,-!p1@Zfp11!0.15!2.79!Zfp11;;chr18:5334765..5334833,-!p2@Zfp438!0.15!2.63!Zfp438;;chr17:13897299..13897342,+!p3@Mllt4!0.15!2.13!Mllt4;;chr4:118846454..118846506,-!p2@Zfp691!0.15!2.13!Zfp691;;chr2:152223783..152223812,-!p4@Sox12!0.15!2.13!Sox12;;chr7:135020469..135020485,+!p4@Zfp646!0.15!1.48!Zfp646;;chr1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fp708!0.13!4.93!Zfp708;;chr1:133904131..133904168,+!p4@Elk4!0.13!4.43!Elk4;;chr19:7342725..7342784,+!p1@Rcor2!0.13!4.27!Rcor2;;chr2:37278526..37278575,-!p2@Rc3h2!0.13!4.27!Rc3h2;;chr7:26053413..26053439,+!p4@Cic!0.13!4.27!Cic;;chr15:102455492..102455531,-!p2@Atf7!0.13!3.94!Atf7;;chr18:84758852..84758878,-!p2@Zfp407!0.13!3.94!Zfp407;;chr15:38230415..38230426,-!p2@Klf10!0.13!3.45!Klf10;;chr13:30076280..30076334,-!p3@E2f3!0.13!2.79!E2f3;;chr13:15555035..15555073,+!p4@Gli3!0.13!2.46!Gli3;;chr10:127080141..127080160,+!p2@Stat6!0.13!2.46!Stat6;;chr13:67182439..67182491,-!p2@Zfp708!0.13!2.30!Zfp708;;chr15:76181718..76181729,+!p3@Maf1!0.13!2.13!Maf1;;chr13:37870307..37870337,+!p5@Rreb1!0.13!1.97!Rreb1;;chr8:13339656..13339661,+!p3@Tfdp1!0.13!1.97!Tfdp1;;chr1:64167811..64167826,-!p5@Klf7!0.13!1.81!Klf7;;chr10:13686783..13686814,+!p4@Hivep2!0.13!1.64!Hivep2;;chr11:5761979..5761992,+!p2@Aebp1!0.13!1.64!Aebp1;;chr13:59924354..59924366,-!p3@Zcchc6!0.13!1.48!Zcchc6;;chr12:3806962..3806973,+!p6@Dnmt3a!0.13!1.48!Dnmt3a;;chr13:67295432..67295453,+!p1@Zfp455!0.13!1.31!Zfp455;;chr14:17407549..17407575,-!p3@Rarb!0.13!0.99!Rarb;;chr1:165243379..165243402,-!p3@Prrx1!0.13!0.99!Prrx1;;chr2:44965761..44965785,-!p13@Zeb2!0.13!0.99!Zeb2;;chrX:45245621..45245632,-!p3@Smarca1!0.13!0.82!Smarca1;;chr5:138187466..138187477,+!p11@Tsc22d4!0.13!0.66!Tsc22d4;;chr5:77695181..77695196,+!p6@Rest!0.13!0.66!Rest;;chr11:98614826..98614845,+!p9@Thra!0.13!0.66!Thra;;chr3:100773602..100773607,-!p2@Ttf2!0.13!0.66!Ttf2;;chr2:77654815..77654872,-!p2@Zfp385b!0.13!0.66!Zfp385b;;chr14:18493480..18493494,+!p2@Thrb!0.13!0.49!Thrb;;chr1:138846009..138846038,-!p3@Nr5a2!0.13!0.49!Nr5a2;;chr6:131338435..131338482,-!p1@Csda!0.12!113.77!Csda;;chr12:99985145..99985256,+!p1@Zc3h14!0.12!39.40!Zc3h14;;chr12:100801772..100801861,-!p1@Foxn3!0.12!24.30!Foxn3;;chr13:21494557..21494617,-!p1@Zkscan3!0.12!21.34!Zkscan3;;chr12:85658052..85658097,+!p1@Zfp410!0.12!19.70!Zfp410;;chr2:75542592..75542609,-!p2@Nfe2l2!0.12!19.70!Nfe2l2;;chr6:122769906..122769956,+!p1@Foxj2!0.12!18.88!Foxj2;;chr10:79862175..79862221,-!p1@Mbd3!0.12!16.09!Mbd3;;chr7:30601080..30601172,+!p1@Zfp790!0.12!14.28!Zfp790;;chr9:36954842..36954908,-!p1@Pknox2!0.12!13.13!Pknox2;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.12!11.82!Camta2;;chr14:31832345..31832364,+!p2@Pbrm1!0.12!9.85!Pbrm1;;chr5:31754831..31754876,+!p1@Zfp512!0.12!8.04!Zfp512;;chr4:129055091..129055168,-!p1@Zbtb8a!0.12!6.24!Zbtb8a;;chr8:97856080..97856150,-!p2@Zfp319!0.12!6.07!Zfp319;;chr10:20032330..20032345,+!p3@Bclaf1!0.12!4.93!Bclaf1;;chr13:21545538..21545569,-!p2@Zfp187!0.12!4.60!Zfp187;;chr13:37918773..37918818,+!p3@Rreb1!0.12!4.27!Rreb1;;chr15:57526469..57526534,+!p1@Zhx2!0.12!3.45!Zhx2;;chr2:119698528..119698571,+!p3@Mga!0.12!3.45!Mga;;chr16:84835315..84835342,+!p3@Gabpa!0.12!3.45!Gabpa;;chr7:28764153..28764173,-!p2@Zfp780b!0.12!3.28!Zfp780b;;chr18:84255771..84255795,-!p3@Tshz1!0.12!2.79!Tshz1;;chr9:18278055..18278126,-!p1@Zfp558!0.12!2.63!Zfp558;;chr7:25292076..25292114,+!p4@Zfp428!0.12!2.46!Zfp428;;chrX:98449805..98449834,+!p3@Foxo4!0.12!2.46!Foxo4;;chr8:74405860..74405905,+!p2@Zfp709!0.12!1.81!Zfp709;;chr5:107125778..107125803,-!p4@Zfp644!0.12!1.81!Zfp644;;chr6:90412608..90412630,+!p2@Klf15!0.12!1.64!Klf15;;chr17:51951634..51951651,-!p6@Satb1!0.12!1.48!Satb1;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.12!1.48!Gm8008;;chr15:98701606..98701618,-!p1@Mll2!0.12!1.31!Mll2;;chr19:23216132..23216157,+!p3@Klf9!0.12!0.99!Klf9;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:749-24G1
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011414
+|is_a=EFO:0002091;;FF:0011414
+|is_obsolete=
+|library_id=CNhs11118
+|library_id_phase_based=2:CNhs11118
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;749
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;749
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N10.CNhs11118.749-24G1.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N10.CNhs11118.749-24G1.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N10.CNhs11118.749-24G1.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N10.CNhs11118.749-24G1.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520neonate%2520N10.CNhs11118.749-24G1.mm9.nobarcode.rdna.fa.gz
 |name=heart, neonate N10
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11118,LSID734,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.151900044828478,0.0660154575426048,0.0660154575426048,0,0,0.123307592435218,1.33303439362141,0,0.0660154575426048,0,0,0.433956773367769,0,0,0,0,0,0,0.28086449767205,0,0,0,0,0.123307592435218,0,0,0.0404056023054468,0,0,0,0,0,0.365211598855813,0,0,0,0,0.00353238204811491,0.121677760123115,0,0.0202368479968724,0.240064631459542,-0.00959749178191072,0,0,0,0,0,0,0,0,0,0,0,0,0.406752300991184,0,0,0,0,0.0322103353097893,0,0.148880778942111,0.219235970178219,0.173915035905005,0.0660154575426048,0.168916696767651,0.0535887560142728,0.0158239931339222,0.176927204833031,0,0.0452989916832669,-0.00867287012842388,0,0.123307592435218,0,0.0367449331990104,-0.103161570979654,-0.0364057122545052,0.218929963044315,0.0648151949743624,0,0,0,0,0,0,0.118022626108461,0.00921334982493233,0.0487533375277142,0,0,0,0.0370741082617777
 |rna_box=24
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=heart
 |top_motifs=MEF2{A,B,C,D}:3.50271716867;NR5A1,2:3.17376703486;EVI1:2.6740068537;NKX2-1,4:2.34714170209;ALX1:2.27206533875;ESRRA:2.25940712277;NR3C1:2.22876725114;SRF:2.20245170524;RXR{A,B,G}:2.13265243294;HOX{A5,B5}:2.09839580018;GATA4:1.97171270189;PAX4:1.87460774032;HMGA1,2:1.65011754152;FOXP1:1.64343197308;IKZF2:1.54542007786;TEAD1:1.54104293458;UFEwm:1.49686849302;NR6A1:1.46696238677;NFATC1..3:1.45559453629;FOXL1:1.38343684985;NFE2L1:1.25974305223;MYBL2:1.24430095067;CDX1,2,4:1.15258853544;TGIF1:1.13942175822;IKZF1:1.11061704554;PRDM1:1.08549301259;NKX2-2,8:1.0641201949;SOX5:1.01813042974;CDC5L:1.01650176913;TEF:1.00145284231;POU3F1..4:0.986208955927;GLI1..3:0.966378539385;PITX1..3:0.84496506018;GATA6:0.832395693017;HBP1_HMGB_SSRP1_UBTF:0.826204430847;BPTF:0.777852801069;HAND1,2:0.736984572917;NKX3-1:0.730577121067;PAX2:0.70028615612;MAFB:0.659709452207;IRF7:0.651770243892;TLX2:0.643807613628;ZBTB16:0.64140040471;KLF4:0.632541279804;SOX{8,9,10}:0.612785074402;TFAP4:0.600970063569;FOXO1,3,4:0.595463484616;ESR1:0.574444038604;HIF1A:0.572438765288;FOSL2:0.556619985322;GCM1,2:0.550164106951;AR:0.535041321226;EBF1:0.476353672935;NFE2L2:0.444784033472;TLX1..3_NFIC{dimer}:0.421651711833;T:0.404131819172;GFI1B:0.38703689821;NKX3-2:0.354045799833;TOPORS:0.300826664625;IRF1,2:0.295906944849;ZNF238:0.290337873099;GTF2A1,2:0.253397112046;SPIB:0.221961689829;POU1F1:0.167242975724;RBPJ:0.161234842612;MAZ:0.155479891654;TFCP2:0.14933583136;RORA:0.144550323736;NKX6-1,2:0.140480499347;TFAP2{A,C}:0.126411016469;YY1:0.0963609222314;SMAD1..7,9:0.0565259314138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.054252739465;MZF1:0.0537205607693;GFI1:0.0528095833002;ARID5B:0.0507519334046;NFIX:0.0454593477647;RREB1:0.0447996187669;PATZ1:0.0218495664509;PAX5:0.0129019817653;HES1:0.00985953291969;ELF1,2,4:-0.0748468078482;FOX{I1,J2}:-0.0805219189783;ZNF384:-0.0895077469571;SP1:-0.0977162253422;SREBF1,2:-0.105968361305;ATF4:-0.12476752327;NHLH1,2:-0.127228103384;CREB1:-0.131299637543;GTF2I:-0.160423292783;HIC1:-0.16489179695;NR1H4:-0.2047303701;MTE{core}:-0.205429514866;ZFP161:-0.209280531667;BREu{core}:-0.210566081505;XCPE1{core}:-0.213232258966;ETS1,2:-0.222606931794;NFIL3:-0.233507594713;CUX2:-0.236190727812;NKX2-3_NKX2-5:-0.260203369122;FOXD3:-0.276748600561;TAL1_TCF{3,4,12}:-0.278313379626;NANOG{mouse}:-0.299540052303;SPI1:-0.305986964062;DBP:-0.307864979934;HOX{A4,D4}:-0.315793734393;E2F1..5:-0.324082530289;SOX2:-0.332963434541;RFX2..5_RFXANK_RFXAP:-0.337241082167;NANOG:-0.343437262693;ATF2:-0.346541736876;TFAP2B:-0.351571081683;EP300:-0.360188488166;RXRA_VDR{dimer}:-0.381809334557;FOXN1:-0.389774852549;ALX4:-0.396777883956;TBP:-0.400381599384;BACH2:-0.418615942497;MTF1:-0.496344476572;AIRE:-0.49714898946;TP53:-0.511206564444;DMAP1_NCOR{1,2}_SMARC:-0.525432077004;NRF1:-0.528709711914;VSX1,2:-0.529653021275;MYFfamily:-0.54160909336;ZNF148:-0.549300474818;FOXA2:-0.557828027935;ZNF143:-0.562301399139;SOX17:-0.567966571289;FOXP3:-0.594903464135;EGR1..3:-0.603065060662;MYB:-0.604552592083;CRX:-0.607041446999;REST:-0.61763599501;HSF1,2:-0.640290167877;HNF4A_NR2F1,2:-0.640537413246;NFE2:-0.645513683327;JUN:-0.648700120636;ZIC1..3:-0.649288020244;STAT2,4,6:-0.673308487796;ATF5_CREB3:-0.677325083954;FOX{D1,D2}:-0.679322546847;NFKB1_REL_RELA:-0.679820258403;CEBPA,B_DDIT3:-0.712610952456;MED-1{core}:-0.712989887779;ELK1,4_GABP{A,B1}:-0.716057247505;HLF:-0.756421823087;ATF6:-0.763054909252;FOXQ1:-0.792229034965;EN1,2:-0.801838673246;RFX1:-0.823969079943;POU6F1:-0.840080503859;TFDP1:-0.848552487811;HNF1A:-0.854953331801;PPARG:-0.862507234921;LMO2:-0.864828350522;RUNX1..3:-0.866739223917;PDX1:-0.900956603753;TBX4,5:-0.90390732232;AHR_ARNT_ARNT2:-0.911173525508;HOXA9_MEIS1:-0.920540635673;GZF1:-0.925399362066;ZBTB6:-0.949626575693;ZEB1:-0.99079734931;FOS_FOS{B,L1}_JUN{B,D}:-1.0009648088;LHX3,4:-1.08658527475;bHLH_family:-1.18713620561;STAT1,3:-1.23673679345;OCT4_SOX2{dimer}:-1.2540435895;MYOD1:-1.26007158378;SNAI1..3:-1.28206638868;POU5F1:-1.34018040387;FOX{F1,F2,J1}:-1.35489181219;PRRX1,2:-1.35785806934;ZNF423:-1.38245811692;STAT5{A,B}:-1.42474389636;PAX8:-1.44315506691;POU2F1..3:-1.44547546182;NFY{A,B,C}:-1.45193944352;ADNP_IRX_SIX_ZHX:-1.45196537233;LEF1_TCF7_TCF7L1,2:-1.59362127509;PBX1:-1.63704389473;PAX6:-1.67649170535;SPZ1:-1.67755898714;PAX1,9:-1.6920237902;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.72965674966;ONECUT1,2:-1.75722383808;HMX1:-1.98076937398;FOXM1:-2.99376444509
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:749-24G1;search_select_hide=table117:749-24G1
 }}

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FF:749-24G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11118

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0