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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000033,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0005743,UBERON:0006238,UBERON:0006601
|DRA_sample_Accession=CAGE@SAMD00004937
|accession_numbers=CAGE;DRX008627;DRR009499;DRZ000924;DRZ002309;DRZ012274;DRZ013659
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0010085,FF:0000999,FF:0000004
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.32!205.60!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.31!201.61!FOXG1;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.64!OLIG1;;chr1:244214577..244214593,+!p1@ZNF238!2.24!173.66!ZNF238;;chrX:25034067..25034088,-!p1@ARX!2.24!171.67!ARX;;chr2:5832508..5832524,+!p1@SOX11!2.16!143.72!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.06!113.78!POU3F3;;chr2:162272785..162272836,+!p1@TBR1!2.06!113.78!TBR1;;chr7:100065686..100065701,-!p2@TSC22D4!2.03!105.80!TSC22D4;;chr7:31380292..31380351,-!p1@NEUROD6!2.02!103.80!NEUROD6;;chr1:2461692..2461710,-!p1@HES5!2.00!99.81!HES5;;chr9:126773880..126773895,+!p2@LHX2!1.99!97.81!LHX2;;chr4:81118647..81118666,+!p1@PRDM8!1.95!113.78!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!1.92!602.83!MEF2C;;chr21:34398234..34398250,+!p1@OLIG2!1.90!77.85!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.90!77.85!MYT1L;;chr9:126774018..126774055,+!p1@LHX2!1.86!71.86!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.86!FOXG1;;chr19:38720294..38720348,-!p1@DPF1!1.82!79.85!DPF1;;chr3:181429704..181429722,+!p1@SOX2!1.81!63.88!SOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.81!63.88!ASCL1;;chr2:200322229..200322251,-!p3@SATB2!1.80!61.88!SATB2;;chr19:13134772..13134822,+!p2@NFIX!1.77!83.84!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!1.76!91.82!MLLT11;;chr2:5832493..5832507,+!p2@SOX11!1.76!55.89!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.71!49.90!SATB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.71!49.90!PEG3;;chr9:77112244..77112262,+!p1@RORB!1.69!53.90!RORB;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.91!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.63!159.69!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.92!DLX5;;chr8:65492756..65492768,+!p2@BHLHE22!1.63!41.92!BHLHE22;;chr14:29236269..29236285,+!p3@FOXG1!1.63!41.92!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.63!41.92!SATB2;;chr2:2335109..2335134,-!p2@MYT1L!1.63!41.92!MYT1L;;chr9:124991204..124991246,-!p1@LHX6!1.63!41.92!LHX6;;chr1:38512457..38512474,-!p1@POU3F1!1.62!43.92!POU3F1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.61!39.92!POU3F3;;chr2:60781201..60781258,-!p3@BCL11A!1.61!39.92!BCL11A;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.90!ARNT2;;chr2:16080659..16080685,+!p1@MYCN!1.59!37.93!MYCN;;chr2:162272889..162272915,+!p2@TBR1!1.59!37.93!TBR1;;chr2:172950227..172950249,+!p2@DLX1!1.59!37.93!DLX1;;chr11:8102846..8102892,+!p1@TUB!1.57!49.90!TUB;;chr19:13135582..13135600,+!p3@NFIX!1.57!35.93!NFIX;;chrX:82763292..82763317,+!p1@POU3F4!1.57!35.93!POU3F4;;chr1:151032860..151032918,+!p1@MLLT11!1.56!403.22!MLLT11;;chr8:93107451..93107468,-!p2@RUNX1T1!1.54!33.93!RUNX1T1;;chr15:80733570..80733659,+!p2@ARNT2!1.54!33.93!ARNT2;;chr2:172967621..172967637,-!p1@DLX2!1.52!83.84!DLX2;;chr17:7492684..7492778,-!p2@SOX15!1.52!65.87!SOX15;;chr2:145277882..145277967,-!p3@ZEB2!1.52!53.90!ZEB2;;chr4:57547454..57547469,-!p1@HOPX!1.52!31.94!HOPX;;chr18:53070846..53070902,-!p6@TCF4!1.52!31.94!TCF4;;chr5:88179271..88179286,-!p7@MEF2C!1.49!29.94!MEF2C;;chr8:93115274..93115323,-!p4@RUNX1T1!1.49!29.94!RUNX1T1;;chr9:126774058..126774081,+!p3@LHX2!1.49!29.94!LHX2;;chr2:200320768..200320800,-!p4@SATB2!1.46!27.95!SATB2;;chr5:88179230..88179270,-!p4@MEF2C!1.45!51.90!MEF2C;;chr20:20348740..20348757,+!p1@INSM1!1.43!25.95!INSM1;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.95!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.43!25.95!SOX8;;chr2:60780607..60780624,-!p2@BCL11A!1.42!75.85!BCL11A;;chr21:34442540..34442560,+!p2@OLIG1!1.40!23.95!OLIG1;;chrX:139587228..139587234,-!p1@SOX3!1.40!23.95!SOX3;;chr2:200323414..200323455,-!p1@SATB2!1.39!49.90!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!33.93!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!1.38!31.94!PROX1;;chr1:41827095..41827155,+!p1@FOXO6!1.37!29.94!FOXO6;;chr17:53342311..53342400,+!p1@HLF!1.37!25.95!HLF;;chr2:175199675..175199688,+!p1@SP9!1.36!21.96!SP9;;chr8:65492915..65492932,+!p1@BHLHE22!1.36!21.96!BHLHE22;;chr19:47523058..47523114,+!p1@NPAS1!1.36!21.96!NPAS1;;chr18:42260059..42260132,+!p1@SETBP1!1.34!33.93!SETBP1;;chrX:84498989..84499003,+!p1@ZNF711!1.33!27.95!ZNF711;;chr7:150974206..150974255,-!p1@SMARCD3!1.32!121.76!SMARCD3;;chr2:239148671..239148686,-!p1@HES6!1.32!71.86!HES6;;chr2:200322259..200322280,-!p5@SATB2!1.32!19.96!SATB2;;chr6:99282475..99282501,+!p1@POU3F2!1.32!19.96!POU3F2;;chr18:53070913..53070933,-!p16@TCF4!1.32!19.96!TCF4;;chr19:13135731..13135787,+!p10@NFIX!1.32!19.96!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.96!KDM5D;;chr12:24102576..24102623,-!p2@SOX5!1.32!19.96!SOX5;;chr14:29236301..29236317,+!p5@FOXG1!1.32!19.96!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!1.31!93.82!BCL11A;;chr19:57183114..57183145,-!p1@ZNF835!1.31!21.96!ZNF835;;chr2:113057415..113057477,+!p3@ZC3H6!1.29!23.95!ZC3H6;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.96!NR2F1;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.95!HEY1;;chr8:30890810..30890880,-!p1@PURG!1.28!17.97!PURG;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.28!17.97!POU3F3;;chr2:172949484..172949522,+!p1@DLX1!1.28!17.97!DLX1;;chr1:244214611..244214624,+!p4@ZNF238!1.28!17.97!ZNF238;;chr5:88179195..88179224,-!p3@MEF2C!1.27!27.95!MEF2C;;chr3:18486354..18486377,-!p2@SATB1!1.27!21.96!SATB1;;chr14:21994337..21994442,-!p1@SALL2!1.25!45.91!SALL2;;chr20:62680984..62680999,-!p1@SOX18!1.25!21.96!SOX18;;chr20:2673383..2673441,+!p1@EBF4!1.24!25.95!EBF4;;chr2:200322654..200322707,-!p2@SATB2!1.24!23.95!SATB2;;chr5:92919100..92919135,+!p3@NR2F1!1.24!19.96!NR2F1;;chr8:65492520..65492554,+!p3@BHLHE22!1.23!15.97!BHLHE22;;chr8:93115362..93115391,-!p9@RUNX1T1!1.23!15.97!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.23!15.97!SOX2;;chr4:113437332..113437337,-!p1@NEUROG2!1.23!15.97!NEUROG2;;chr20:657284..657307,-!p1@SCRT2!1.23!15.97!SCRT2;;chr12:111471526..111471541,+!p1@CUX2!1.23!15.97!CUX2;;chr15:80696666..80696700,+!p4@ARNT2!1.23!15.97!ARNT2;;chr6:91006518..91006570,-!p1@BACH2!1.22!35.93!BACH2;;chr6:19837592..19837621,+!p1@ID4!1.21!91.82!ID4;;chr3:141105705..141105770,+!p4@ZBTB38!1.20!17.97!ZBTB38;;chr16:71918033..71918101,-!p1@ZNF821!1.19!53.90!ZNF821;;chr19:13134457..13134462,+!p5@NFIX!1.19!25.95!NFIX;;chr1:244219775..244219893,+!p2@ZNF238!1.19!19.96!ZNF238;;chr18:42260030..42260055,+!p3@SETBP1!1.19!17.97!SETBP1;;chr11:8102819..8102845,+!p3@TUB!1.19!17.97!TUB;;chr6:21597765..21597779,+!p2@SOX4!1.18!111.78!SOX4;;chr5:88119715..88119757,-!p11@MEF2C!1.18!13.97!MEF2C;;chr8:93107696..93107716,-!p8@RUNX1T1!1.18!13.97!RUNX1T1;;chr22:38380543..38380569,-!p1@SOX10!1.18!13.97!SOX10;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.18!13.97!POU3F3;;chr2:166428839..166428859,+!p2@CSRNP3!1.18!13.97!CSRNP3;;chr2:2335070..2335098,-!p4@MYT1L!1.18!13.97!MYT1L;;chr2:63277948..63277974,+!p1@OTX1!1.18!13.97!OTX1;;chr2:73144683..73144697,+!p3@EMX1!1.18!13.97!EMX1;;chr1:42384343..42384380,-!p4@HIVEP3!1.18!13.97!HIVEP3;;chr6:21593973..21593988,+!p1@SOX4!1.17!489.05!SOX4;;chr20:42136308..42136358,+!p2@L3MBTL1!1.17!17.97!L3MBTL;;chr6:91006575..91006602,-!p2@BACH2!1.16!19.96!BACH2;;chr7:6655225..6655279,+!p1@ENST00000457543!1.15!19.96!ZNF853;;chr3:33482052..33482116,-!p2@UBP1!1.15!19.96!UBP1;;chr17:38219209..38219230,+!p1@THRA!1.13!163.68!THRA;;chr18:52988979..52988993,-!p18@TCF4!1.11!11.98!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.98!NFIX;;chr6:99282592..99282616,+!p3@POU3F2!1.11!11.98!POU3F2;;chr7:20826504..20826526,-!p1@SP8!1.11!11.98!SP8;;chr11:125034640..125034655,+!p1@PKNOX2!1.11!11.98!PKNOX2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.98!ZSCAN1;;chr2:16080823..16080836,+!p5@MYCN!1.11!11.98!MYCN;;chr2:162273241..162273253,+!p4@TBR1!1.11!11.98!TBR1;;chr2:200213794..200213807,-!p9@SATB2!1.11!11.98!SATB2;;chr2:200325244..200325264,-!p11@SATB2!1.11!11.98!SATB2;;chrY:21906761..21906810,-!p2@KDM5D!1.11!11.98!KDM5D;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.93!ZMAT1;;chr7:138666053..138666146,-!p1@KIAA1549!1.08!45.91!KIAA1549;;chr1:164528616..164528660,+!p5@PBX1!1.07!21.96!PBX1;;chr19:38183208..38183225,-!p1@ZNF781!1.07!13.97!ZNF781;;chr14:35873101..35873119,-!p6@NFKBIA!1.06!13.97!NFKBIA;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.98!TCF4;;chr19:44123734..44123796,-!p1@ZNF428!1.05!381.26!ZNF428;;chr15:37392724..37392757,-!p1@MEIS2!1.05!47.91!MEIS2;;chr3:18466787..18466839,-!p1@SATB1!1.05!45.91!SATB1;;chr4:81105027..81105039,+!p3@PRDM8!1.05!11.98!PRDM8;;chr2:145277640..145277771,-!p1@ZEB2!1.04!135.74!ZEB2;;chr1:151032782..151032801,+!p4@MLLT11!1.04!19.96!MLLT11;;chr19:58629742..58629787,-!p2@ZSCAN18!1.04!9.98!ZSCAN18;;chr1:42384532..42384603,-!p2@HIVEP3!1.04!9.98!HIVEP3;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.98!OLIG1;;chr2:100721328..100721348,-!p4@AFF3!1.04!9.98!AFF3;;chr2:166428861..166428883,+!p3@CSRNP3!1.04!9.98!CSRNP3;;chr2:60780516..60780526,-!p11@BCL11A!1.04!9.98!BCL11A;;chr10:118897911..118897974,-!p1@VAX1!1.04!9.98!VAX1;;chr11:31839488..31839515,-!p3@PAX6!1.04!9.98!PAX6;;chr11:8040739..8040815,+!p4@TUB!1.04!9.98!TUB;;chr14:29236169..29236216,+!p6@FOXG1!1.04!9.98!FOXG1;;chr14:33403648..33403710,+!p3@NPAS3!1.04!9.98!NPAS3;;chrX:82763265..82763283,+!p2@POU3F4!1.04!9.98!POU3F4;;chr9:77112225..77112238,+!p2@RORB!1.04!9.98!RORB;;chr9:14308004..14308041,-!p14@NFIB!1.04!9.98!NFIB;;chrX:102000893..102000918,+!p4@BHLHB9!1.04!9.98!BHLHB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.98!SALL1;;chr6:21594206..21594221,+!p15@SOX4!1.04!9.98!SOX4;;chr7:138666186..138666213,-!p2@KIAA1549!1.04!9.98!KIAA1549;;chr7:96634878..96634900,+!p2@DLX6!1.04!9.98!DLX6;;chr9:124976299..124976327,-!p3@LHX6!1.04!9.98!LHX6;;chr19:47922750..47922795,-!p1@MEIS3!1.03!15.97!MEIS3;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!13.97!ZBTB16;;chr16:79634624..79634642,-!p1@MAF!1.02!37.93!MAF;;chr2:74229812..74229867,+!p1@TET3!1.02!23.95!TET3;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.98!KLF15;;chr19:31840130..31840160,-!p2@TSHZ3!1.00!13.97!TSHZ3;;chrX:118739835..118739862,-!p1@NKRF!1.00!9.98!NKRF;;chr1:164528410..164528428,+!p1@PBX1!0.99!67.87!PBX1;;chr20:306177..306211,+!p2@SOX12!0.99!61.88!SOX12;;chr17:38219184..38219195,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.ctss.bed.gz
|id=FF:10085-102B4
|id=FF:10085-102B4
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010085
|is_a=EFO:0002091;;FF:0010085
|is_obsolete=
|library_id=CNhs11797
|library_id_phase_based=2:CNhs11797
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10085
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10085
|name=brain, fetal, pool1
|name=brain, fetal, pool1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11797,LSID820,release009,COMPLETED
|profile_hcage=CNhs11797,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=102
|rna_box=102
|rna_catalog_number=Cat: 636643 Lot: 8101369A-5
|rna_catalog_number=Cat: 636643 Lot: 8101369A-5
Line 57: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 77: Line 100:
|sample_tissue=brain
|sample_tissue=brain
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|top_motifs=PRRX1,2:3.95610482654;AHR_ARNT_ARNT2:3.77680727594;MED-1{core}:3.56145725108;EGR1..3:3.46124850847;MZF1:3.44723065212;NKX2-3_NKX2-5:3.26769367908;ZFP161:3.20444606673;TFAP2B:3.10931915151;REST:3.00295503641;SOX2:2.93857957705;NHLH1,2:2.85412819577;POU3F1..4:2.76152717285;MTE{core}:2.75243066235;RFX1:2.70554459517;BREu{core}:2.64457546405;DBP:2.5465968791;FOXM1:2.46429329709;MTF1:2.45801796611;POU5F1:2.44151334796;RREB1:2.43414252673;RORA:2.38505915199;OCT4_SOX2{dimer}:2.31570933684;ATF2:2.30679020141;GTF2I:2.3035171723;POU6F1:2.28919317512;PATZ1:2.2639514878;ZBTB6:2.19720085871;CUX2:2.15864400641;POU1F1:2.09448664256;SOX{8,9,10}:2.07505196093;PRDM1:2.05069559234;PAX6:2.00509978249;TFDP1:1.89669885023;HOX{A4,D4}:1.88908536381;JUN:1.82886994287;MYFfamily:1.82320943388;GCM1,2:1.81668215982;SMAD1..7,9:1.78853176296;LEF1_TCF7_TCF7L1,2:1.76831634318;HIC1:1.76630883149;NANOG:1.76385169826;MAZ:1.75523744214;SOX17:1.75166968858;ZNF423:1.75127510391;CDC5L:1.74934158331;ZIC1..3:1.74451260722;ADNP_IRX_SIX_ZHX:1.73766085771;GTF2A1,2:1.66160410258;LMO2:1.63331119592;FOXL1:1.55599332602;GFI1B:1.52422570087;T:1.49057279666;TGIF1:1.38618690591;GZF1:1.37724696484;ZNF384:1.34777684247;NKX6-1,2:1.34733695262;SOX5:1.33245337094;HMGA1,2:1.29073716101;PAX5:1.1998650529;LHX3,4:1.17216636243;GFI1:1.14920967933;PAX8:1.12633213486;ARID5B:1.10887576554;RFX2..5_RFXANK_RFXAP:1.04200405147;NRF1:1.04167574767;HAND1,2:1.02641277522;ONECUT1,2:1.01917637243;HOXA9_MEIS1:1.00554049968;MAFB:0.99383469704;VSX1,2:0.993367961794;MYOD1:0.946908703029;FOXP1:0.921964069821;IKZF2:0.842105199019;KLF4:0.787417572377;PAX3,7:0.770354024509;RBPJ:0.761885608996;CRX:0.738003963873;TOPORS:0.737057253089;BPTF:0.704690268718;ESRRA:0.682335901555;FOXD3:0.653975266174;GATA4:0.593582162263;ZNF143:0.571851620382;FOXP3:0.544793444097;TBP:0.496469613449;XCPE1{core}:0.479371341479;PAX1,9:0.44099586997;MEF2{A,B,C,D}:0.425994338625;SP1:0.386411498309;PBX1:0.295724632107;NR3C1:0.295491244531;ZNF238:0.24473368837;ATF4:0.230122776129;POU2F1..3:0.224680860151;GATA6:0.219666530527;FOX{D1,D2}:0.210259938408;EP300:0.197015157643;EVI1:0.172834966856;PITX1..3:0.15998414231;EBF1:0.117777697793;AIRE:0.0457282198876;PDX1:0.038277534813;YY1:0.037378242311;FOXQ1:-0.0133448454378;NKX3-2:-0.0292729431849;ZEB1:-0.0386868398021;XBP1:-0.0464487728116;HNF1A:-0.0691298470405;TEF:-0.106745604153;FOXA2:-0.118710199608;ATF5_CREB3:-0.121206665394;STAT1,3:-0.152675483786;FOX{F1,F2,J1}:-0.197840320115;NFY{A,B,C}:-0.259340448228;UFEwm:-0.283772139997;AR:-0.329459435427;PAX2:-0.329476979066;NFIL3:-0.340582938093;NFIX:-0.343731013709;PAX4:-0.346802576034;STAT5{A,B}:-0.356598095368;bHLH_family:-0.378455976563;SNAI1..3:-0.402939188022;CEBPA,B_DDIT3:-0.410802907921;NFATC1..3:-0.438813546512;NR1H4:-0.447698453534;HNF4A_NR2F1,2:-0.456560338668;TLX2:-0.462231911503;ALX1:-0.466102364317;HMX1:-0.485194246407;ZBTB16:-0.510848887296;TFAP2{A,C}:-0.518083624134;MYBL2:-0.534447342978;NFE2L2:-0.538832314156;HOX{A6,A7,B6,B7}:-0.550200627517;STAT2,4,6:-0.562824151399;ZNF148:-0.572598378231;SPIB:-0.593746176418;RUNX1..3:-0.614783847482;SREBF1,2:-0.628546915445;CREB1:-0.640207815181;DMAP1_NCOR{1,2}_SMARC:-0.651648185518;TLX1..3_NFIC{dimer}:-0.664763417396;HOX{A5,B5}:-0.679358656021;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.691585439533;FOSL2:-0.710289625599;HBP1_HMGB_SSRP1_UBTF:-0.720882876828;CDX1,2,4:-0.730763901346;FOS_FOS{B,L1}_JUN{B,D}:-0.759254220749;TEAD1:-0.785185143745;TP53:-0.786230069919;FOX{I1,J2}:-0.802230806331;NKX3-1:-0.805997921343;NANOG{mouse}:-0.816826086218;HES1:-0.817927593293;EN1,2:-0.821002237718;BACH2:-0.822710864246;TFCP2:-0.825369383453;TBX4,5:-0.828822320929;NFKB1_REL_RELA:-0.833250611051;MYB:-0.851878106625;ETS1,2:-0.86609674203;ATF6:-0.878140036422;E2F1..5:-0.926825440992;SPI1:-0.935761442497;IKZF1:-0.944202504883;GLI1..3:-0.983412140346;FOXO1,3,4:-0.988582410801;NFE2:-1.00990027363;TFAP4:-1.02588416172;HLF:-1.08595737291;NR5A1,2:-1.13377269446;PPARG:-1.14213900692;RXR{A,B,G}:-1.16195881523;IRF7:-1.1627455097;SPZ1:-1.16798192162;NKX2-1,4:-1.17130431354;ESR1:-1.17440715593;IRF1,2:-1.22085900684;FOXN1:-1.32045520082;SRF:-1.39206037447;HIF1A:-1.40024752585;ALX4:-1.44522267752;RXRA_VDR{dimer}:-1.44801590919;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.46599041477;NFE2L1:-1.49877186524;TAL1_TCF{3,4,12}:-1.50345720284;ELK1,4_GABP{A,B1}:-1.59487109503;NR6A1:-1.61105175912;HSF1,2:-1.70610297225;NKX2-2,8:-2.20577222179;ELF1,2,4:-2.48153109579
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10085-102B4;search_select_hide=table117:FF:10085-102B4
}}
}}

Latest revision as of 12:21, 3 June 2020

Name:brain, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11797
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage20-33 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-5
catalog numberCat: 636643 Lot: 8101369A-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004937
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11797 CAGE DRX008627 DRR009499
Accession ID Hg19

Library idBAMCTSS
CNhs11797 DRZ000924 DRZ002309
Accession ID Hg38

Library idBAMCTSS
CNhs11797 DRZ012274 DRZ013659
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.844
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.144
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0321
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0486
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.844
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0737
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0626
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.477
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.477
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.28
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.477
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.698
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.477
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11797

Jaspar motifP-value
MA0002.20.00504
MA0003.10.253
MA0004.10.713
MA0006.10.328
MA0007.10.144
MA0009.10.123
MA0014.10.516
MA0017.10.00269
MA0018.20.0693
MA0019.10.575
MA0024.10.818
MA0025.10.303
MA0027.10.357
MA0028.10.0213
MA0029.10.131
MA0030.10.712
MA0031.10.462
MA0035.20.233
MA0038.10.0127
MA0039.20.17
MA0040.10.699
MA0041.10.787
MA0042.10.947
MA0043.10.841
MA0046.10.859
MA0047.20.0489
MA0048.10.264
MA0050.18.77636e-7
MA0051.10.00106
MA0052.10.0427
MA0055.10.0201
MA0057.10.505
MA0058.10.615
MA0059.10.244
MA0060.10.0326
MA0061.10.0248
MA0062.22.76307e-4
MA0065.20.00146
MA0066.10.0573
MA0067.10.818
MA0068.10.014
MA0069.10.21
MA0070.10.0364
MA0071.10.0965
MA0072.10.884
MA0073.10.315
MA0074.10.223
MA0076.10.0208
MA0077.10.193
MA0078.10.359
MA0079.20.736
MA0080.26.88182e-10
MA0081.10.0244
MA0083.10.0745
MA0084.10.775
MA0087.10.701
MA0088.10.101
MA0090.10.177
MA0091.10.848
MA0092.10.703
MA0093.10.733
MA0099.21.11733e-12
MA0100.10.717
MA0101.10.0105
MA0102.20.0174
MA0103.10.409
MA0104.20.837
MA0105.10.00655
MA0106.10.0467
MA0107.10.0225
MA0108.22.71463e-4
MA0111.10.495
MA0112.25.22808e-4
MA0113.10.178
MA0114.10.0053
MA0115.10.514
MA0116.10.0123
MA0117.10.986
MA0119.10.0956
MA0122.10.41
MA0124.10.855
MA0125.10.443
MA0131.10.801
MA0135.10.0571
MA0136.14.47534e-15
MA0137.20.0509
MA0138.20.084
MA0139.10.232
MA0140.10.0184
MA0141.10.0205
MA0142.10.429
MA0143.10.335
MA0144.10.0903
MA0145.10.144
MA0146.10.0122
MA0147.10.635
MA0148.10.0575
MA0149.10.0164
MA0150.13.51289e-5
MA0152.10.872
MA0153.10.714
MA0154.10.0439
MA0155.10.764
MA0156.15.64254e-10
MA0157.10.258
MA0159.10.00593
MA0160.10.0151
MA0162.10.181
MA0163.11.7709e-5
MA0164.10.776
MA0258.10.0162
MA0259.10.86



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11797

Novel motifP-value
10.0385
100.0264
1000.327
1010.991
1020.631
1030.123
1040.174
1050.413
1060.0677
1070.134
1080.804
1098.23403e-4
110.0278
1100.113
1110.075
1120.356
1130.451
1140.047
1150.85
1160.218
1170.00655
1180.0861
1190.279
120.796
1200.235
1210.223
1220.68
1230.419
1240.25
1250.526
1260.00179
1270.573
1280.251
1290.72
137.62631e-4
1300.277
1310.727
1320.562
1330.0101
1340.606
1350.294
1360.00214
1370.607
1380.927
1390.137
140.818
1400.423
1410.342
1420.435
1430.0442
1440.746
1450.426
1460.758
1470.86
1480.127
1490.199
150.0492
1500.193
1510.52
1520.0878
1530.619
1540.508
1550.467
1560.865
1570.13
1580.636
1590.971
160.0223
1600.36
1610.0956
1620.291
1630.82
1640.0145
1650.0372
1660.942
1670.156
1680.277
1690.00656
170.21
180.452
190.147
20.78
200.216
210.103
220.154
230.358
240.0526
250.372
260.0102
270.747
280.456
290.00766
30.0171
300.735
310.933
320.0333
330.0964
340.991
350.659
360.228
370.0173
380.291
390.258
40.715
400.0877
410.524
420.163
430.147
440.109
450.86
460.202
470.0616
480.0452
490.266
50.21
500.364
510.494
520.495
530.772
540.331
550.205
560.439
570.395
580.181
590.0968
60.856
600.0624
610.0405
620.129
630.155
640.39
650.394
660.459
670.287
680.169
690.866
70.0322
700.00577
710.00653
720.218
730.024
740.495
750.0227
760.313
770.196
787.02851e-4
790.357
80.117
800.597
810.648
820.607
830.0836
840.692
850.273
860.199
870.0027
880.621
890.247
90.545
900.0579
910.641
920.541
930.283
940.269
950.00617
960.657
970.862
980.338
990.945



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11797


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0010085 (human brain - fetal sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

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