FF:12209-129D4: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090612, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12185,RDhi10011
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013675

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12185		CAGE		DRX008056		DRR008928
RDhi10011		RNA-Seq		DRX012345		DRR013793

Accession ID Hg19

Library id		BAM		CTSS
CNhs12185		DRZ000353		DRZ001738
RDhi10011		DRZ002994

Accession ID Hg38

Library id		BAM		CTSS
CNhs12185		DRZ011703		DRZ013088
RDhi10011

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.28
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0902
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.294
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.273
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.366
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.521
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.75
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.277
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.457
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.21
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.571
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.0292
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0158
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.36
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.216
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.951
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.172
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.22
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.22
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.11
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.22
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.064
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.757
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12185

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.59857e-6
MA0003.1	MA0003.1	0.346
MA0004.1	MA0004.1	0.372
MA0006.1	MA0006.1	0.538
MA0007.1	MA0007.1	0.496
MA0009.1	MA0009.1	0.951
MA0014.1	MA0014.1	0.722
MA0017.1	MA0017.1	0.0195
MA0018.2	MA0018.2	0.983
MA0019.1	MA0019.1	0.591
MA0024.1	MA0024.1	0.996
MA0025.1	MA0025.1	0.424
MA0027.1	MA0027.1	0.431
MA0028.1	MA0028.1	3.2637e-5
MA0029.1	MA0029.1	0.488
MA0030.1	MA0030.1	0.00943
MA0031.1	MA0031.1	0.0387
MA0035.2	MA0035.2	0.346
MA0038.1	MA0038.1	0.348
MA0039.2	MA0039.2	0.341
MA0040.1	MA0040.1	0.884
MA0041.1	MA0041.1	0.135
MA0042.1	MA0042.1	0.713
MA0043.1	MA0043.1	0.663
MA0046.1	MA0046.1	0.333
MA0047.2	MA0047.2	0.183
MA0048.1	MA0048.1	0.472
MA0050.1	MA0050.1	1.45038e-11
MA0051.1	MA0051.1	1.28158e-5
MA0052.1	MA0052.1	0.0991
MA0055.1	MA0055.1	0.617
MA0057.1	MA0057.1	0.814
MA0058.1	MA0058.1	0.235
MA0059.1	MA0059.1	0.343
MA0060.1	MA0060.1	0.584
MA0061.1	MA0061.1	5.7299e-5
MA0062.2	MA0062.2	2.85816e-15
MA0065.2	MA0065.2	0.0188
MA0066.1	MA0066.1	0.249
MA0067.1	MA0067.1	0.563
MA0068.1	MA0068.1	0.364
MA0069.1	MA0069.1	0.265
MA0070.1	MA0070.1	0.467
MA0071.1	MA0071.1	0.595
MA0072.1	MA0072.1	0.611
MA0073.1	MA0073.1	0.451
MA0074.1	MA0074.1	0.666
MA0076.1	MA0076.1	6.66016e-9
MA0077.1	MA0077.1	0.274
MA0078.1	MA0078.1	0.699
MA0079.2	MA0079.2	0.518
MA0080.2	MA0080.2	2.80955e-12
MA0081.1	MA0081.1	6.61575e-4
MA0083.1	MA0083.1	0.073
MA0084.1	MA0084.1	0.521
MA0087.1	MA0087.1	0.6
MA0088.1	MA0088.1	0.115
MA0090.1	MA0090.1	1.14564e-4
MA0091.1	MA0091.1	0.5
MA0092.1	MA0092.1	0.999
MA0093.1	MA0093.1	0.456
MA0099.2	MA0099.2	8.53768e-5
MA0100.1	MA0100.1	0.213
MA0101.1	MA0101.1	0.00456
MA0102.2	MA0102.2	0.441
MA0103.1	MA0103.1	0.00407
MA0104.2	MA0104.2	0.139
MA0105.1	MA0105.1	5.77482e-7
MA0106.1	MA0106.1	0.419
MA0107.1	MA0107.1	0.00305
MA0108.2	MA0108.2	8.38861e-8
MA0111.1	MA0111.1	0.342
MA0112.2	MA0112.2	0.0115
MA0113.1	MA0113.1	0.959
MA0114.1	MA0114.1	0.0633
MA0115.1	MA0115.1	0.321
MA0116.1	MA0116.1	1.68915e-5
MA0117.1	MA0117.1	0.822
MA0119.1	MA0119.1	0.62
MA0122.1	MA0122.1	0.296
MA0124.1	MA0124.1	0.833
MA0125.1	MA0125.1	0.963
MA0131.1	MA0131.1	0.16
MA0135.1	MA0135.1	0.0553
MA0136.1	MA0136.1	1.2912e-18
MA0137.2	MA0137.2	0.456
MA0138.2	MA0138.2	0.375
MA0139.1	MA0139.1	0.165
MA0140.1	MA0140.1	0.135
MA0141.1	MA0141.1	0.844
MA0142.1	MA0142.1	0.114
MA0143.1	MA0143.1	0.913
MA0144.1	MA0144.1	0.884
MA0145.1	MA0145.1	0.963
MA0146.1	MA0146.1	0.205
MA0147.1	MA0147.1	0.144
MA0148.1	MA0148.1	0.829
MA0149.1	MA0149.1	0.0875
MA0150.1	MA0150.1	0.596
MA0152.1	MA0152.1	0.199
MA0153.1	MA0153.1	0.0792
MA0154.1	MA0154.1	2.98064e-4
MA0155.1	MA0155.1	0.796
MA0156.1	MA0156.1	2.16551e-15
MA0157.1	MA0157.1	0.0711
MA0159.1	MA0159.1	0.0345
MA0160.1	MA0160.1	0.343
MA0162.1	MA0162.1	0.754
MA0163.1	MA0163.1	3.57029e-9
MA0164.1	MA0164.1	0.913
MA0258.1	MA0258.1	0.077
MA0259.1	MA0259.1	0.508

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12185

Novel motif	Logo	P-value
1	1	0.0937
10	10	0.0493
100	100	0.595
101	101	0.392
102	102	0.68
103	103	0.113
104	104	0.174
105	105	0.262
106	106	0.663
107	107	0.361
108	108	0.362
109	109	0.0587
11	11	0.087
110	110	0.199
111	111	0.104
112	112	0.239
113	113	0.0365
114	114	0.354
115	115	0.817
116	116	0.864
117	117	0.00231
118	118	0.2
119	119	0.998
12	12	0.816
120	120	0.561
121	121	0.356
122	122	0.32
123	123	0.103
124	124	0.0984
125	125	0.346
126	126	0.11
127	127	0.533
128	128	0.558
129	129	0.718
13	13	0.402
130	130	0.358
131	131	0.716
132	132	0.346
133	133	0.00482
134	134	0.523
135	135	0.342
136	136	0.416
137	137	0.0633
138	138	0.355
139	139	0.0702
14	14	0.359
140	140	0.672
141	141	0.253
142	142	0.72
143	143	0.0369
144	144	0.752
145	145	0.211
146	146	0.163
147	147	0.0815
148	148	0.143
149	149	0.53
15	15	0.207
150	150	0.711
151	151	0.439
152	152	0.856
153	153	0.65
154	154	0.776
155	155	0.00795
156	156	0.385
157	157	0.263
158	158	0.141
159	159	0.184
16	16	0.98
160	160	0.284
161	161	0.114
162	162	0.993
163	163	0.206
164	164	0.596
165	165	0.255
166	166	0.258
167	167	0.14
168	168	0.147
169	169	0.443
17	17	0.94
18	18	0.548
19	19	0.883
2	2	0.972
20	20	0.792
21	21	0.816
22	22	0.725
23	23	0.695
24	24	0.321
25	25	0.0353
26	26	0.182
27	27	0.242
28	28	0.513
29	29	0.0668
3	3	0.0371
30	30	0.454
31	31	0.732
32	32	0.27
33	33	0.376
34	34	0.755
35	35	0.174
36	36	0.0252
37	37	0.11
38	38	0.364
39	39	0.52
4	4	0.576
40	40	0.154
41	41	0.177
42	42	0.0822
43	43	0.155
44	44	0.391
45	45	0.88
46	46	0.203
47	47	0.0738
48	48	0.111
49	49	0.122
5	5	0.307
50	50	0.978
51	51	0.463
52	52	0.448
53	53	0.376
54	54	0.844
55	55	0.119
56	56	0.591
57	57	0.63
58	58	0.0161
59	59	0.266
6	6	0.848
60	60	0.582
61	61	0.0294
62	62	0.0178
63	63	0.681
64	64	0.214
65	65	0.565
66	66	0.712
67	67	0.361
68	68	0.729
69	69	0.757
7	7	0.123
70	70	0.128
71	71	0.0497
72	72	0.0401
73	73	0.504
74	74	0.372
75	75	0.00773
76	76	0.0891
77	77	0.812
78	78	0.146
79	79	0.443
8	8	0.538
80	80	0.00255
81	81	0.183
82	82	0.0824
83	83	0.561
84	84	0.329
85	85	0.813
86	86	0.105
87	87	0.0965
88	88	0.723
89	89	0.829
9	9	0.363
90	90	0.0475
91	91	0.842
92	92	0.546
93	93	0.736
94	94	0.0357
95	95	0.00616
96	96	0.501
97	97	0.556
98	98	0.0864
99	99	0.103

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12185

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=RNA-Seq@SAMD00013675
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000236,CL:0000838,CL:0002031,CL:0000037,CL:0000566,CL:0000837,CL:0000826,CL:0000051
+|accession_numbers=CAGE;DRX008056;DRR008928;DRZ000353;DRZ001738;DRZ011703;DRZ013088!RNA-Seq;DRX012345;DRR013793;DRZ002994;
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000025
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.54!343.08!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.46!288.22!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.39!243.26!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.35!224.76!POU2AF1;;chr11:47400078..47400106,-!p1@SPI1!2.12!129.56!SPI1;;chr6:391743..391759,+!p1@IRF4!2.09!122.95!IRF4;;chr2:231090433..231090469,+!p1@SP140!2.07!117.67!SP140;;chr2:100759037..100759058,-!p2@AFF3!2.06!114.36!AFF3;;chr6:91006518..91006570,-!p1@BACH2!2.04!239.96!BACH2;;chr2:231090471..231090504,+!p2@SP140!1.95!87.92!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.89!76.68!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.82!476.61!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.77!57.51!PLEK;;chr2:100758991..100759009,-!p3@AFF3!1.76!56.85!AFF3;;chr8:86099884..86099918,+!p4@E2F5!1.76!56.19!E2F5;;chr3:71355163..71355209,-!p5@FOXP1!1.74!74.70!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.72!75.36!BACH2;;chr3:32023232..32023273,+!p1@ZNF860!1.69!68.09!ZNF860;;chr2:60780607..60780624,-!p2@BCL11A!1.64!127.58!BCL11A;;chr19:16435625..16435682,+!p1@KLF2!1.59!1160.13!KLF2;;chr20:56195474..56195506,-!p1@ZBP1!1.58!37.02!ZBP1;;chr19:13213662..13213686,-!p1@LYL1!1.55!50.24!LYL1;;chr7:50344251..50344288,+!p3@IKZF1!1.55!34.37!IKZF1;;chr8:86089627..86089653,+!p3@E2F5!1.54!38.34!E2F5;;chr2:68592394..68592405,+!p2@PLEK!1.51!31.07!PLEK;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.07!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.50!30.41!IKZF1;;chr5:158526756..158526797,-!p3@EBF1!1.47!28.42!EBF1;;chr4:57522513..57522548,-!p4@HOPX!1.47!28.42!HOPX;;chr2:60781201..60781258,-!p3@BCL11A!1.46!27.76!BCL11A;;chr3:71409904..71409927,-!p46@FOXP1!1.44!26.44!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.44!26.44!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.40!148.07!ELF1;;chr10:94449703..94449718,+!p1@HHEX!1.37!83.95!HHEX;;chr18:52989031..52989079,-!p2@TCF4!1.36!50.24!TCF4;;chr8:86089531..86089544,+!p7@E2F5!1.36!21.81!E2F5;;chr14:69262947..69262986,-!p3@ZFP36L1!1.35!25.78!ZFP36L1;;chr2:60778035..60778060,-!p4@BCL11A!1.35!25.78!BCL11A;;chr2:231090344..231090361,-!p3@SP110!1.29!18.51!SP110;;chr1:151319654..151319698,-!p2@RFX5!1.27!37.68!RFX5;;chr4:185395633..185395651,-!p2@IRF2!1.26!27.10!IRF2;;chr19:13213704..13213726,-!p3@LYL1!1.26!22.48!LYL1;;chr5:88179017..88179046,-!p2@MEF2C!1.24!64.78!MEF2C;;chr9:37034186..37034216,-!p2@PAX5!1.24!16.53!PAX5;;chr2:100759060..100759073,-!p8@AFF3!1.23!15.87!AFF3;;chr19:36391434..36391450,-!p1@NFKBID!1.22!30.41!NFKBID;;chr3:71631151..71631194,-!p15@FOXP1!1.21!17.19!FOXP1;;chr17:37934204..37934241,-!p3@IKZF3!1.21!15.20!IKZF3;;chr19:45579725..45579743,-!p1@ZNF296!1.18!62.80!ZNF296;;chr1:25256756..25256774,-!p1@RUNX3!1.17!25.78!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.17!13.88!SPI1;;chr7:50348268..50348366,+!p4@IKZF1!1.15!13.22!IKZF1;;chr11:128563948..128564003,+!p1@FLI1!1.14!152.04!FLI1;;chr19:58220517..58220583,-!p1@ZNF154!1.13!39.66!ZNF154;;chr2:61108695..61108753,+!p1@REL!1.12!83.95!REL;;chr7:64838786..64838809,+!p2@ZNF92!1.12!69.41!ZNF92;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.85!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.20!SATB1;;chr4:185395590..185395627,-!p3@IRF2!1.12!15.20!IRF2;;chr19:42636586..42636607,-!p1@POU2F2!1.10!32.39!POU2F2;;chr14:75988771..75988826,+!p1@BATF!1.09!15.20!BATF;;chr17:38020481..38020506,-!p7@IKZF3!1.09!11.24!IKZF3;;chr7:64126535..64126559,+!p2@ZNF107!1.07!23.14!ZNF107;;chr5:88179195..88179224,-!p3@MEF2C!1.07!17.19!MEF2C;;chr10:104154246..104154347,+!p3@NFKB2!1.06!64.12!NFKB2;;chr10:94449675..94449694,+!p2@HHEX!1.06!28.42!HHEX;;chr6:91006503..91006517,-!p3@BACH2!1.06!10.58!BACH2;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.58!ZNF727;;chr2:61108650..61108687,+!p2@REL!1.05!50.90!REL;;chr9:117150254..117150271,-!p1@AKNA!1.05!28.42!AKNA;;chr5:158526709..158526741,-!p7@EBF1!1.04!9.92!EBF1;;chr9:37027156..37027193,-!p4@PAX5!1.04!9.92!PAX5;;chr4:81104895..81104920,+!p2@PRDM8!1.03!14.54!PRDM8;;chr6:144385698..144385742,-!p2@PLAGL1!1.03!11.90!PLAGL1;;chr7:50343895..50343936,+!p5@IKZF1!1.01!9.25!IKZF1;;chr3:18487057..18487105,-!p4@SATB1!1.01!9.25!SATB1;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.25!IKZF3;;chr19:36204309..36204335,+!p1@ZBTB32!1.01!9.25!ZBTB32;;chr1:167298300..167298319,+!p2@POU2F1!1.01!9.25!POU2F1;;chr19:20748574..20748599,-!p1@ZNF737!1.00!54.87!ZNF737;;chr9:3525727..3525828,-!p2@RFX3!0.99!23.14!RFX3;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.71!TSC22D3;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.07!RUNX1;;chr9:37003148..37003152,-!p5@PAX5!0.98!8.59!PAX5;;chr8:86089498..86089519,+!p6@E2F5!0.98!8.59!E2F5;;chr17:38020607..38020621,-!p9@IKZF3!0.98!8.59!IKZF3;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.59!ZNF208;;chr14:69263043..69263069,-!p8@ZFP36L1!0.98!8.59!ZFP36L1;;chrX:106960221..106960236,-!p3@TSC22D3!0.97!23.80!TSC22D3;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.10!ZMAT1;;chr2:231084659..231084721,-!p1@SP110!0.95!192.36!SP110;;chr19:11959532..11959593,+!p1@ZNF439!0.95!31.07!ZNF439;;chr6:157098579..157098634,+!p4@ARID1B!0.95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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12185.12209-129D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12185.12209-129D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12185.12209-129D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12185.12209-129D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12185.12209-129D4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12209-129D4
-|is_a=EFO:0002091;;FF:0000002;;FF:0000025;;FF:0000210
+|is_a=EFO:0002091;;FF:0000025;;FF:0000210
+|is_obsolete=
+|library_id=CNhs12185!RDhi10011
+|library_id_phase_based=2:CNhs12185
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12209
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12209
 |name=CD19+ B Cells (pluriselect), donor090612, donation2
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12185,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=2.15973
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=blood
 |top_motifs=POU2F1..3:3.3047692326;POU5F1:3.20945799116;FOXA2:2.66248542242;PBX1:1.95460541429;ELF1,2,4:1.86846326877;DMAP1_NCOR{1,2}_SMARC:1.83460461801;TLX2:1.83306623834;FOX{I1,J2}:1.82753581051;FOX{F1,F2,J1}:1.75330376369;SPI1:1.4607040224;ELK1,4_GABP{A,B1}:1.42313366566;FOXO1,3,4:1.4168428197;IRF1,2:1.41091583274;CRX:1.35116641264;FOX{D1,D2}:1.32305728542;ETS1,2:1.30052798164;SPIB:1.29390721728;STAT1,3:1.13870156241;PAX6:1.11399152196;ESR1:1.08466028894;RUNX1..3:1.04896217417;YY1:1.01708216667;NFKB1_REL_RELA:0.977917261401;FOXP3:0.915684393104;NANOG{mouse}:0.906634765081;IRF7:0.886025014561;RFX2..5_RFXANK_RFXAP:0.842919032646;MYOD1:0.837141303932;AIRE:0.795069825832;LMO2:0.769674150543;CDX1,2,4:0.749259833548;ZEB1:0.726023125043;BPTF:0.711716721104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.709238913943;OCT4_SOX2{dimer}:0.672686894807;ALX1:0.670762005469;NKX2-2,8:0.63180972621;RORA:0.608326886727;TGIF1:0.594724957127;HBP1_HMGB_SSRP1_UBTF:0.506998916983;SNAI1..3:0.504103847998;GATA6:0.479868634679;BREu{core}:0.475535819977;ATF5_CREB3:0.432291930102;NR5A1,2:0.402220364575;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.401031365207;VSX1,2:0.394942027553;CREB1:0.393278291266;CUX2:0.357942316902;FOXN1:0.353575193319;MYB:0.340216179714;HMX1:0.338299071482;HES1:0.336902769094;PDX1:0.325507208082;SOX{8,9,10}:0.320609503908;MEF2{A,B,C,D}:0.289027611508;NKX6-1,2:0.287410923467;FOXQ1:0.283226741518;SOX5:0.282762582516;PAX3,7:0.280240279867;NRF1:0.273421359381;ZNF148:0.25548565953;NFIX:0.254686303993;STAT5{A,B}:0.22143373441;ZNF143:0.213175097333;FOXP1:0.204707503938;LEF1_TCF7_TCF7L1,2:0.187062290771;NFIL3:0.184970930522;ATF2:0.149959974205;HOX{A6,A7,B6,B7}:0.129937426688;GLI1..3:0.123419600625;NHLH1,2:0.088407421397;PRRX1,2:0.0868442828553;SREBF1,2:0.0777612274537;ATF4:0.0306147050043;SPZ1:0.0214100186715;IKZF2:-0.00762941925825;EP300:-0.015567351764;PAX2:-0.0787557274514;HIF1A:-0.0871938686168;RBPJ:-0.119533841807;NKX2-1,4:-0.121647265838;NFY{A,B,C}:-0.129143788185;NFATC1..3:-0.130228375023;HAND1,2:-0.138344533709;ZFP161:-0.142314150831;HNF4A_NR2F1,2:-0.175750152657;TEF:-0.179378893102;ADNP_IRX_SIX_ZHX:-0.215228965093;TAL1_TCF{3,4,12}:-0.216888179468;SMAD1..7,9:-0.284943526357;CDC5L:-0.304505408407;PPARG:-0.318249501729;E2F1..5:-0.322348706703;TFAP4:-0.323969535214;EBF1:-0.332150233406;T:-0.356806471066;HNF1A:-0.357110160143;NKX2-3_NKX2-5:-0.401430598601;ALX4:-0.404052521487;POU1F1:-0.404588852971;ARID5B:-0.421762792897;AR:-0.425986796437;RXRA_VDR{dimer}:-0.438267923074;FOXL1:-0.453404815227;ZBTB16:-0.454030711537;TOPORS:-0.45545929304;PRDM1:-0.456882882406;EVI1:-0.475903343982;AHR_ARNT_ARNT2:-0.479419574159;NR6A1:-0.488202324127;CEBPA,B_DDIT3:-0.513173840988;bHLH_family:-0.51603603836;GFI1:-0.519639050355;ATF6:-0.521519931576;RFX1:-0.526568370109;FOSL2:-0.541269302248;TFCP2:-0.579645115137;FOS_FOS{B,L1}_JUN{B,D}:-0.587277985049;MYBL2:-0.625203323248;NR1H4:-0.650338930331;NANOG:-0.653508487838;PAX4:-0.656211727002;JUN:-0.665737219363;HOXA9_MEIS1:-0.672510274542;DBP:-0.691394863782;BACH2:-0.713207635608;MYFfamily:-0.719078292808;MAFB:-0.722893661287;XCPE1{core}:-0.735832145274;SRF:-0.757084526224;HOX{A4,D4}:-0.767774950486;POU6F1:-0.788102100946;ONECUT1,2:-0.810275153989;XBP1:-0.816936376946;PATZ1:-0.819683294382;ZNF238:-0.849775139311;TBP:-0.868357104934;NKX3-2:-0.900209519706;RXR{A,B,G}:-0.912311717739;RREB1:-0.913457220779;HLF:-0.916481162879;EGR1..3:-0.919963449954;SOX2:-0.929436171253;STAT2,4,6:-0.93204884399;MTE{core}:-0.96734368039;NFE2:-0.973796030766;HMGA1,2:-0.984052998904;MED-1{core}:-1.00310838083;EN1,2:-1.03021457207;MZF1:-1.04481440326;NKX3-1:-1.0537404555;HSF1,2:-1.06463613258;REST:-1.08397356865;TBX4,5:-1.08532030433;ZNF384:-1.09830674286;MTF1:-1.10063740556;TP53:-1.11620905188;NFE2L2:-1.12570341717;GATA4:-1.1271133331;SOX17:-1.12881603946;ZNF423:-1.19780383211;GFI1B:-1.23512437151;NR3C1:-1.23538441849;MAZ:-1.23794620687;HOX{A5,B5}:-1.27642795866;LHX3,4:-1.28591124982;SP1:-1.33549745272;PAX8:-1.36423334387;PITX1..3:-1.38942123818;UFEwm:-1.41082526924;GZF1:-1.43649783444;FOXM1:-1.43695241451;HIC1:-1.44883920118;ESRRA:-1.45961531167;GCM1,2:-1.49317411091;ZBTB6:-1.50123956752;TFAP2B:-1.54793234564;TFAP2{A,C}:-1.55949962296;GTF2I:-1.585877024;KLF4:-1.63557727434;NFE2L1:-1.69067837471;TEAD1:-1.69311297908;PAX5:-1.70578927416;POU3F1..4:-1.79877851376;PAX1,9:-1.80115953681;TLX1..3_NFIC{dimer}:-1.86982211917;FOXD3:-1.94585529661;GTF2A1,2:-1.98910431136;IKZF1:-1.99918024185;TFDP1:-2.01600391565;ZIC1..3:-2.17938274468
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12209-129D4;search_select_hide=table117:FF:12209-129D4
 }}

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FF:12209-129D4: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0