FF:10815-111B5: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1
Species:	Human (Homo sapiens)
Library ID:	CNhs12325
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	NA
cell type	epithelial cell
cell line	HelaS3
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005891

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12325		CAGE		DRX007882		DRR008754

Accession ID Hg19

Library id		BAM		CTSS
CNhs12325		DRZ000179		DRZ001564

Accession ID Hg38

Library id		BAM		CTSS
CNhs12325		DRZ011529		DRZ012914

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.315
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.652
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0.612
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0749
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0401
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0382
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0147
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0401
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.587
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0401
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0287
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.643
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12325

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0145
MA0003.1	MA0003.1	0.203
MA0004.1	MA0004.1	0.132
MA0006.1	MA0006.1	0.679
MA0007.1	MA0007.1	0.819
MA0009.1	MA0009.1	0.351
MA0014.1	MA0014.1	0.712
MA0017.1	MA0017.1	0.628
MA0018.2	MA0018.2	0.883
MA0019.1	MA0019.1	0.516
MA0024.1	MA0024.1	4.27319e-7
MA0025.1	MA0025.1	0.0842
MA0027.1	MA0027.1	0.718
MA0028.1	MA0028.1	1.5202e-7
MA0029.1	MA0029.1	0.0188
MA0030.1	MA0030.1	0.48
MA0031.1	MA0031.1	0.43
MA0035.2	MA0035.2	0.00573
MA0038.1	MA0038.1	0.138
MA0039.2	MA0039.2	0.0389
MA0040.1	MA0040.1	0.325
MA0041.1	MA0041.1	0.414
MA0042.1	MA0042.1	0.697
MA0043.1	MA0043.1	0.754
MA0046.1	MA0046.1	0.2
MA0047.2	MA0047.2	0.957
MA0048.1	MA0048.1	0.00334
MA0050.1	MA0050.1	0.198
MA0051.1	MA0051.1	0.603
MA0052.1	MA0052.1	2.64262e-4
MA0055.1	MA0055.1	4.33986e-5
MA0057.1	MA0057.1	0.641
MA0058.1	MA0058.1	0.0437
MA0059.1	MA0059.1	0.0169
MA0060.1	MA0060.1	3.6555e-14
MA0061.1	MA0061.1	0.0554
MA0062.2	MA0062.2	2.68214e-5
MA0065.2	MA0065.2	0.0319
MA0066.1	MA0066.1	0.765
MA0067.1	MA0067.1	0.19
MA0068.1	MA0068.1	0.0406
MA0069.1	MA0069.1	0.651
MA0070.1	MA0070.1	0.253
MA0071.1	MA0071.1	0.148
MA0072.1	MA0072.1	0.117
MA0073.1	MA0073.1	0.273
MA0074.1	MA0074.1	0.553
MA0076.1	MA0076.1	1.48551e-6
MA0077.1	MA0077.1	0.743
MA0078.1	MA0078.1	0.179
MA0079.2	MA0079.2	0.268
MA0080.2	MA0080.2	5.82978e-8
MA0081.1	MA0081.1	0.336
MA0083.1	MA0083.1	0.00303
MA0084.1	MA0084.1	0.663
MA0087.1	MA0087.1	0.705
MA0088.1	MA0088.1	0.00197
MA0090.1	MA0090.1	0.514
MA0091.1	MA0091.1	0.0444
MA0092.1	MA0092.1	0.403
MA0093.1	MA0093.1	0.0893
MA0099.2	MA0099.2	0.0455
MA0100.1	MA0100.1	0.354
MA0101.1	MA0101.1	0.175
MA0102.2	MA0102.2	0.409
MA0103.1	MA0103.1	0.183
MA0104.2	MA0104.2	8.63587e-4
MA0105.1	MA0105.1	0.799
MA0106.1	MA0106.1	0.963
MA0107.1	MA0107.1	0.0277
MA0108.2	MA0108.2	0.316
MA0111.1	MA0111.1	0.548
MA0112.2	MA0112.2	0.325
MA0113.1	MA0113.1	0.871
MA0114.1	MA0114.1	0.0434
MA0115.1	MA0115.1	0.00786
MA0116.1	MA0116.1	0.368
MA0117.1	MA0117.1	0.762
MA0119.1	MA0119.1	0.172
MA0122.1	MA0122.1	0.581
MA0124.1	MA0124.1	0.564
MA0125.1	MA0125.1	0.6
MA0131.1	MA0131.1	0.0547
MA0135.1	MA0135.1	0.0863
MA0136.1	MA0136.1	0.0065
MA0137.2	MA0137.2	0.226
MA0138.2	MA0138.2	0.0347
MA0139.1	MA0139.1	0.392
MA0140.1	MA0140.1	0.00158
MA0141.1	MA0141.1	0.0831
MA0142.1	MA0142.1	0.951
MA0143.1	MA0143.1	0.0998
MA0144.1	MA0144.1	0.305
MA0145.1	MA0145.1	0.803
MA0146.1	MA0146.1	0.142
MA0147.1	MA0147.1	6.82615e-4
MA0148.1	MA0148.1	0.791
MA0149.1	MA0149.1	0.024
MA0150.1	MA0150.1	0.771
MA0152.1	MA0152.1	0.496
MA0153.1	MA0153.1	0.709
MA0154.1	MA0154.1	0.304
MA0155.1	MA0155.1	0.077
MA0156.1	MA0156.1	0.832
MA0157.1	MA0157.1	0.422
MA0159.1	MA0159.1	0.573
MA0160.1	MA0160.1	0.113
MA0162.1	MA0162.1	0.977
MA0163.1	MA0163.1	0.0282
MA0164.1	MA0164.1	0.617
MA0258.1	MA0258.1	0.572
MA0259.1	MA0259.1	0.0571

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12325

Novel motif	Logo	P-value
1	1	0.131
10	10	0.0463
100	100	0.0497
101	101	0.895
102	102	0.94
103	103	0.188
104	104	0.932
105	105	0.369
106	106	0.0523
107	107	0.105
108	108	0.444
109	109	0.0349
11	11	0.796
110	110	0.193
111	111	0.552
112	112	0.00609
113	113	0.0216
114	114	0.715
115	115	0.787
116	116	0.433
117	117	0.058
118	118	0.829
119	119	0.873
12	12	0.912
120	120	0.465
121	121	0.621
122	122	0.569
123	123	0.457
124	124	0.29
125	125	0.665
126	126	0.898
127	127	0.888
128	128	0.0127
129	129	0.407
13	13	4.79676e-5
130	130	0.109
131	131	0.0682
132	132	0.948
133	133	0.281
134	134	0.25
135	135	0.0751
136	136	0.0201
137	137	0.177
138	138	0.596
139	139	0.532
14	14	0.349
140	140	0.7
141	141	0.32
142	142	0.446
143	143	0.683
144	144	0.768
145	145	0.407
146	146	0.375
147	147	0.42
148	148	0.525
149	149	0.0894
15	15	0.954
150	150	0.666
151	151	0.888
152	152	0.0895
153	153	0.249
154	154	0.87
155	155	0.523
156	156	0.529
157	157	0.347
158	158	0.166
159	159	0.278
16	16	0.6
160	160	0.866
161	161	0.186
162	162	0.343
163	163	0.923
164	164	0.573
165	165	0.679
166	166	0.312
167	167	0.139
168	168	0.487
169	169	0.621
17	17	0.709
18	18	0.105
19	19	0.488
2	2	0.0985
20	20	0.03
21	21	0.763
22	22	0.689
23	23	0.0012
24	24	0.269
25	25	0.542
26	26	0.36
27	27	0.218
28	28	0.553
29	29	0.0316
3	3	0.903
30	30	0.0669
31	31	0.295
32	32	0.202
33	33	0.386
34	34	0.158
35	35	0.879
36	36	0.132
37	37	0.522
38	38	0.715
39	39	0.826
4	4	0.345
40	40	0.0554
41	41	0.175
42	42	0.559
43	43	0.591
44	44	0.87
45	45	0.327
46	46	0.861
47	47	0.4
48	48	0.434
49	49	0.867
5	5	0.466
50	50	0.907
51	51	0.408
52	52	0.145
53	53	0.66
54	54	0.518
55	55	0.0476
56	56	0.646
57	57	0.453
58	58	0.833
59	59	0.46
6	6	0.492
60	60	0.234
61	61	0.154
62	62	0.836
63	63	0.545
64	64	0.641
65	65	0.145
66	66	1.06875e-6
67	67	0.707
68	68	0.778
69	69	0.641
7	7	0.122
70	70	0.247
71	71	0.034
72	72	0.404
73	73	0.919
74	74	0.594
75	75	0.0361
76	76	0.178
77	77	0.755
78	78	0.212
79	79	0.461
8	8	0.457
80	80	0.0378
81	81	0.699
82	82	0.0506
83	83	0.501
84	84	0.508
85	85	0.0795
86	86	0.67
87	87	0.0428
88	88	0.587
89	89	0.13
9	9	0.246
90	90	0.074
91	91	0.00601
92	92	0.0984
93	93	0.901
94	94	0.265
95	95	0.0351
96	96	0.216
97	97	0.654
98	98	0.663
99	99	0.605

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12325

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005891
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000235,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002150,CL:0002009,CL:0000040,CL:0000559,CL:0000861
+|accession_numbers=CAGE;DRX007882;DRR008754;DRZ000179;DRZ001564;DRZ011529;DRZ012914
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0011472
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415484..10415508,-!p3@TFAP2A!1.73!52.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.53!54.38!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.19!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!1.48!29.22!HES7;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.80!PITX1;;chr12:85673868..85673881,+!p2@ALX1!1.40!24.09!ALX1;;chr13:73633131..73633149,+!p1@KLF5!1.35!221.18!KLF5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.34!20.71!SEBOX;;chr5:134369879..134369898,-!p2@PITX1!1.29!18.58!PITX1;;chr18:55102598..55102623,+!p1@ONECUT2!1.29!18.29!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.29!18.29!ONECUT2;;chr3:128207349..128207386,-!p3@GATA2!1.28!18.19!GATA2;;chr2:45236540..45236577,-!p1@SIX2!1.28!18.00!SIX2;;chr10:35484053..35484076,+!p1@CREM!1.23!39.57!CREM;;chr1:201979743..201979762,+!p1@ELF3!1.23!16.16!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.20!24.19!FOXQ1;;chr3:12330560..12330579,+!p1@PPARG!1.20!17.03!PPARG;;chr12:85673977..85674015,+!p1@ALX1!1.19!14.51!ALX1;;chr3:128206762..128206781,-!p2@GATA2!1.18!86.40!GATA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.17!13.74!ZBED1;;chrX:131624056..131624069,-!p2@MBNL3!1.15!18.00!MBNL3;;chr6:1389789..1389821,+!p1@FOXF2!1.15!18.00!FOXF2;;chr1:201979703..201979721,+!p2@ELF3!1.15!13.26!ELF3;;chr15:96875657..96875760,+!p14@NR2F2!1.10!19.25!NR2F2;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.61!TFAP2C;;chr5:170736243..170736279,+!p1@TLX3!1.09!11.42!TLX3;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.03!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.07!297.14!MYC;;chr3:114790132..114790174,-!p18@ZBTB20!1.07!10.74!ZBTB20;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.07!10.64!SEBOX;;chr6:126240380..126240430,+!p2@NCOA7!1.06!27.67!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.06!11.90!TFAP2A;;chr3:169381420..169381535,-!p1@MECOM!1.05!12.00!MECOM;;chr12:54380404..54380433,+!p3@HOXC10!1.04!9.97!HOXC10;;chr17:46682321..46682362,-!p1@HOXB6!1.01!9.19!HOXB6;;chr12:54366894..54366922,+!p2@HOXC11!0.98!8.61!HOXC11;;chr7:73038839..73038862,-!p1@MLXIPL!0.96!8.22!MLXIPL;;chr12:2986275..2986363,-!p1@FOXM1!0.95!82.15!FOXM1;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.74!HOXB7;;chr6:1389989..1390019,+!p2@FOXF2!0.93!7.45!FOXF2;;chr11:31832658..31832681,-!p1@PAX6!0.93!7.45!PAX6;;chr12:85674018..85674039,+!p3@ALX1!0.93!7.45!ALX1;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.84!HOXB7;;chrX:131623044..131623089,-!p1@MBNL3!0.91!30.96!MBNL3;;chr9:126774018..126774055,+!p1@LHX2!0.90!6.97!LHX2;;chr3:69915385..69915438,+!p3@MITF!0.90!6.97!MITF;;chr6:20402102..20402152,+!p1@E2F3!0.89!28.93!E2F3;;chr12:54332608..54332636,+!p1@HOXC13!0.89!6.68!HOXC13;;chr6:126240442..126240459,+!p4@NCOA7!0.87!8.32!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.48!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!0.87!6.39!SOX7;;chr17:41277372..41277418,-!p1@BRCA1!0.86!24.00!BRCA1;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.51!E2F2;;chr12:54379136..54379150,+!p4@HOXC5!0.85!6.10!HOXC5;;chr1:151804244..151804310,-!p1@RORC!0.84!5.90!RORC;;chr20:42295745..42295765,+!p1@MYBL2!0.83!100.34!MYBL2;;chr8:128747661..128747703,+!p6@MYC!0.83!8.03!MYC;;chr1:23857325..23857416,-!p2@E2F2!0.83!6.87!E2F2;;chr7:27196267..27196311,-!p1@HOXA7!0.83!5.71!HOXA7;;chr12:54393880..54393962,+!p1@HOXC9!0.83!5.71!HOXC9;;chr12:115121962..115121987,-!p1@TBX3!0.82!50.12!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.82!27.09!NR2F1;;chr20:42295713..42295738,+!p2@MYBL2!0.81!34.83!MYBL2;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.06!EPAS1;;chr15:66994663..66994680,+!p1@SMAD6!0.81!13.55!SMAD6;;chr3:32023232..32023273,+!p1@ZNF860!0.81!7.93!ZNF860;;chr8:55370487..55370503,+!p1@SOX17!0.81!5.42!SOX17;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.42!KLF17;;chrX:131622958..131622978,-!p3@MBNL3!0.80!6.87!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.80!6.68!NCOA7;;chr13:100623375..100623425,-!p1@ZIC5!0.80!5.32!ZIC5;;chr21:38071430..38071456,+!p1@SIM2!0.79!5.22!SIM2;;chr12:54332652..54332671,+!p2@HOXC13!0.79!5.13!HOXC13;;chr1:117602932..117602973,+!p1@TTF2!0.78!20.32!TTF2;;chr3:138665937..138665968,-!p1@FOXL2!0.78!5.03!FOXL2;;chr1:23885981..23886002,-!p1@ID3!0.77!941.54!ID3;;chr12:52445218..52445237,+!p1@NR4A1!0.77!68.21!NR4A1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.93!HOXC5;;chr12:54366949..54366973,+!p3@HOXC11!0.76!4.74!HOXC11;;chr20:32274179..32274213,-!p1@E2F1!0.75!33.96!E2F1;;chr20:32274150..32274166,-!p2@E2F1!0.74!8.90!E2F1;;chr19:2867325..2867348,+!p1@ZNF556!0.74!4.45!ZNF556;;chr9:99180617..99180658,-!p1@ZNF367!0.73!10.16!ZNF367;;chr13:73636516..73636532,+!p3@KLF5!0.73!5.13!KLF5;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.84!NCOA7;;chr15:66994615..66994630,+!p3@SMAD6!0.71!6.19!SMAD6;;chr3:69915369..69915381,+!p4@MITF!0.71!4.16!MITF;;chr1:45805872..45805900,+!p2@TOE1!0.70!10.64!TOE1;;chr15:41913690..41913753,+!p2@MGA!0.70!10.55!MGA;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.97!MAZ;;chr13:73636252..73636307,+!p2@KLF5!0.70!4.74!KLF5;;chr5:134369643..134369675,-!p4@PITX1!0.70!4.06!PITX1;;chr5:170736216..170736238,+!p2@TLX3!0.70!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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep1.CNhs12325.10815-111B5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep1.CNhs12325.10815-111B5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep1.CNhs12325.10815-111B5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep1.CNhs12325.10815-111B5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10815-111B5
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0011472
+|is_a=EFO:0002091;;FF:0011472
+|is_obsolete=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10815
 |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12325,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
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 |rna_box=111
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=38.2955
 |sample_age=
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 |sample_cell_line=HelaS3
@@ Line 73: / Line 94: @@
 |sample_note=
 |sample_sex=female
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 |sample_strain=
 |sample_tissue=cervix
 |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.14952121247;E2F1..5:1.97048122569;FOXD3:1.66725221359;ELK1,4_GABP{A,B1}:1.51501290189;YY1:1.48694692831;NFY{A,B,C}:1.3958210405;FOXQ1:1.37176949599;PITX1..3:1.36345349252;ZNF143:1.30297748185;HOX{A6,A7,B6,B7}:1.28737933867;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.26919241033;TFDP1:1.23739219526;ESRRA:1.15221271079;TOPORS:1.12628103504;NRF1:1.10167114362;POU2F1..3:1.09062211436;ZNF148:1.04344284586;MYB:1.03103971824;bHLH_family:1.02181878413;AIRE:0.981607582385;PAX8:0.89249533351;ZBTB16:0.886447207952;NR5A1,2:0.868342710845;NR6A1:0.837139198133;TEF:0.816235726017;PPARG:0.803118810256;FOX{I1,J2}:0.793900144953;POU3F1..4:0.792025134995;GFI1:0.771811871384;VSX1,2:0.759980328746;ARID5B:0.736404665759;SOX{8,9,10}:0.710305216463;HNF4A_NR2F1,2:0.619264674755;PAX1,9:0.607702829915;NKX3-2:0.594640695386;FOXN1:0.508167880096;FOXP1:0.486700468297;POU1F1:0.482536017456;CDX1,2,4:0.473422014736;IKZF1:0.471660083112;FOXM1:0.462254982996;HBP1_HMGB_SSRP1_UBTF:0.438059197223;BREu{core}:0.435096075722;CUX2:0.413789961006;PAX3,7:0.405390108059;NFIX:0.366624279527;ELF1,2,4:0.366045421443;PAX4:0.349707444934;NKX2-1,4:0.344783049682;EVI1:0.343438407529;STAT5{A,B}:0.335269326167;HOXA9_MEIS1:0.309670011126;TLX2:0.303564247576;ZNF384:0.301079254473;RFX2..5_RFXANK_RFXAP:0.295928648727;PBX1:0.291462572791;NKX3-1:0.249571883241;NFE2L2:0.244656783965;HES1:0.241542428541;RORA:0.237840317758;SNAI1..3:0.224831879888;TEAD1:0.22406168165;HSF1,2:0.21891532701;ZEB1:0.214216443049;OCT4_SOX2{dimer}:0.206680976745;FOXA2:0.194930475925;CDC5L:0.185688658417;PDX1:0.180589913613;MYOD1:0.156219644075;ALX1:0.145845467296;UFEwm:0.130532093057;GCM1,2:0.128028239204;NR1H4:0.12143213003;TBX4,5:0.104541877288;ATF5_CREB3:0.0768675644776;NKX6-1,2:0.0764467424395;IRF7:0.0706461861426;NFE2L1:0.0615952683637;HOX{A5,B5}:0.0516206046689;PRRX1,2:0.023681021549;FOXL1:0.017936136984;FOX{F1,F2,J1}:-0.000878984018486;NFE2:-0.00687820290691;CEBPA,B_DDIT3:-0.0204030354501;GTF2A1,2:-0.0238463291874;IKZF2:-0.0328353324875;BPTF:-0.0631298968686;AHR_ARNT_ARNT2:-0.0635413542976;AR:-0.0704071793165;BACH2:-0.0855207460534;POU6F1:-0.0864946266332;RXRA_VDR{dimer}:-0.0883817469914;HNF1A:-0.0902818715955;GFI1B:-0.107096031699;CREB1:-0.118027066185;EN1,2:-0.120156947737;ZNF423:-0.127049769662;HLF:-0.13967521776;PAX2:-0.144712667972;DBP:-0.147780961419;GATA6:-0.148715674254;LMO2:-0.173482595432;KLF4:-0.174545177469;FOS_FOS{B,L1}_JUN{B,D}:-0.185258148394;ESR1:-0.198605101639;EP300:-0.220956841478;MYBL2:-0.226663602345;ONECUT1,2:-0.228482764007;ZBTB6:-0.229519784204;TLX1..3_NFIC{dimer}:-0.239804858161;RFX1:-0.245666907282;GZF1:-0.254795694028;JUN:-0.267580159009;HOX{A4,D4}:-0.296046297584;LHX3,4:-0.297303194072;ATF4:-0.312619663837;FOSL2:-0.317376871901;POU5F1:-0.332301054587;LEF1_TCF7_TCF7L1,2:-0.345470799649;FOXO1,3,4:-0.35218855877;TBP:-0.353701822193;PAX5:-0.386882649179;RBPJ:-0.389091937711;MEF2{A,B,C,D}:-0.405070617447;HIF1A:-0.40974924137;NFKB1_REL_RELA:-0.411629560591;FOXP3:-0.440217662787;SPIB:-0.451985789355;STAT2,4,6:-0.45372576311;MTF1:-0.453773921176;ZFP161:-0.463680705144;NANOG:-0.471052791531;RXR{A,B,G}:-0.477491041121;TP53:-0.484479748434;HAND1,2:-0.48691041142;SOX5:-0.513390225547;NR3C1:-0.523849809856;SPI1:-0.548685631019;EBF1:-0.554518099624;DMAP1_NCOR{1,2}_SMARC:-0.56034257566;NFIL3:-0.574316852502;MED-1{core}:-0.578031831008;HIC1:-0.585700279219;GTF2I:-0.614220459803;FOX{D1,D2}:-0.617824004051;CRX:-0.623164735329;XCPE1{core}:-0.6322729962;SREBF1,2:-0.638750695595;HMGA1,2:-0.642733416461;GLI1..3:-0.653306172557;RUNX1..3:-0.657936174059;IRF1,2:-0.667830540742;ADNP_IRX_SIX_ZHX:-0.668241286788;ALX4:-0.679129125467;PAX6:-0.684295812649;GATA4:-0.706824488922;REST:-0.709191145793;TFAP2B:-0.715184833067;TAL1_TCF{3,4,12}:-0.723793623075;STAT1,3:-0.756066394596;SOX2:-0.79194507576;ETS1,2:-0.811572768784;NKX2-3_NKX2-5:-0.815583069984;PRDM1:-0.852223650594;TFAP2{A,C}:-0.864192440032;RREB1:-0.901697842045;NKX2-2,8:-0.909639516016;NHLH1,2:-0.921053562486;SOX17:-0.921859197366;SP1:-0.930323655799;ZIC1..3:-0.935589358822;PATZ1:-0.970028657375;EGR1..3:-0.999563353087;MYFfamily:-1.03980730703;MAZ:-1.08207348806;XBP1:-1.08215442952;SRF:-1.09012020469;TFCP2:-1.09207056449;ATF2:-1.13587848064;ZNF238:-1.14990025174;NANOG{mouse}:-1.15317968598;NFATC1..3:-1.28043777082;T:-1.29279748632;MZF1:-1.29608592694;ATF6:-1.30297655627;MTE{core}:-1.30504244266;MAFB:-1.34316132169;TGIF1:-1.39299748478;TFAP4:-1.46725303281;SMAD1..7,9:-1.74895544139;SPZ1:-1.95557361612;HMX1:-2.26897926699
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10815-111B5;search_select_hide=table117:FF:10815-111B5
 }}

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FF:10815-111B5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0