FFCP PHASE1:Hg19::chr19:54567159..54567226,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54567159..54567226,-
|short_description=p1@VSTM1
|description=CAGE_peak_1_at_VSTM1_5end
|association_with_transcript=0bp_to_ENST00000338372,ENST0000037662...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284415 | |EntrezGene=284415 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29455 | |HGNC=29455 | ||
|TSSclassifier=strong | |||
|UniProt=Q6UX27 | |UniProt=Q6UX27 | ||
|association_with_transcript=0bp_to_ENST00000338372,ENST00000376626,ENST00000447872,NM_198481,uc002qcw.3,uc002qcx.3,uc010erb.2_5end | |||
|cluster_id=chr19:54567159..54567226,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_VSTM1_5end | |||
|id=chr19:54567159..54567226,- | |||
|ontology_enrichment_celltype=CL:0002057!6.78e-61!42;CL:0000860!9.09e-56!45;CL:0000766!4.55e-50!76;CL:0000763!3.33e-49!112;CL:0000049!3.33e-49!112;CL:0000037!2.67e-46!172;CL:0000566!2.67e-46!172;CL:0002194!5.28e-44!63;CL:0000576!5.28e-44!63;CL:0000040!5.28e-44!63;CL:0000559!5.28e-44!63;CL:0000988!2.91e-42!182;CL:0002032!3.47e-42!165;CL:0000837!3.47e-42!165;CL:0002009!3.72e-42!65;CL:0000839!1.70e-41!70;CL:0000738!2.30e-40!140;CL:0000557!4.03e-39!71;CL:0002087!4.36e-35!119;CL:0002031!3.38e-31!124;CL:0002393!6.41e-14!9;CL:0002397!6.41e-14!9;CL:0000094!1.11e-12!8;CL:0000134!3.39e-10!358;CL:0002320!1.42e-09!365;CL:0000081!1.12e-08!11;CL:0000219!1.92e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.63e-66;33!CL:0002057;1.63e-66;33!CL:0000473;1.70e-51;39!CL:0000234;1.70e-51;39!CL:0000576;2.93e-49;48!CL:0000766;2.59e-37;69!CL:0000763;5.52e-26;100!CL:0000094;1.20e-18;8!CL:0002393;2.28e-14;6!CL:0002397;2.28e-14;6!CL:0002087;3.14e-13;104!CL:0000081;4.01e-13;11!CL:0000738;5.76e-10;136!CL:0000988;6.56e-09;177!CL:0000767;1.06e-08;3!CL:0000875;6.61e-08;3!CL:0002396;6.61e-08;3!CL:0000775;6.85e-08;3!CL:0000226;2.98e-07;3!CL:0000842;2.98e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.75e-93,42;CL:0002057,2.75e-93,42;CL:0000473,9.90e-88,48;CL:0000234,9.90e-88,48;CL:0000766,7.01e-81,72;CL:0000763,8.65e-73,108;CL:0000049,8.65e-73,108;CL:0002194,1.14e-70,59;CL:0000576,1.14e-70,59;CL:0000040,1.14e-70,59;CL:0000559,1.14e-70,59;CL:0002009,5.90e-68,61;CL:0000557,1.16e-63,67;CL:0000839,7.03e-62,66;CL:0000037,1.39e-52,168;CL:0000988,5.13e-49,177;CL:0002032,1.26e-46,161;CL:0000837,1.26e-46,161;CL:0000738,3.74e-46,136;CL:0002087,1.95e-38,115;CL:0002031,2.66e-31,120;CL:0002393,1.38e-20,9;CL:0002397,1.38e-20,9;CL:0000094,1.13e-18,8;CL:0000134,9.17e-16,354;CL:0002320,3.99e-15,361;CL:0000081,3.85e-13,11;CL:0000219,6.91e-13,386;CL:0000048,3.54e-10,427;CL:0000034,7.25e-10,441;CL:0000723,8.32e-10,433;CL:0000767,1.11e-08,3;CL:0000775,6.39e-08,3;CL:0000875,6.54e-08,3;CL:0002396,6.54e-08,3;CL:0000226,3.05e-07,3;CL:0000842,3.05e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.50e-66;42!CL:0000049;1.39e-21;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.02e-49!102;UBERON:0003061!5.02e-49!102;UBERON:0002193!2.84e-44!112;UBERON:0002371!1.42e-34!80;UBERON:0001474!5.12e-31!86;UBERON:0002405!7.61e-27!115;UBERON:0004765!5.05e-24!101;UBERON:0001434!5.05e-24!101;UBERON:0003081!4.16e-17!216;UBERON:0000178!1.45e-13!15;UBERON:0000179!1.45e-13!15;UBERON:0000463!1.45e-13!15;UBERON:0002204!6.21e-10!167;UBERON:0002384!3.90e-09!375;UBERON:0007023!9.36e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.87e-21;15!UBERON:0000179;8.87e-21;15!UBERON:0000463;8.87e-21;15!UBERON:0002390;8.67e-16;32!UBERON:0002193;5.79e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.05e-78,98;UBERON:0003061,1.05e-78,98;UBERON:0002193,6.16e-70,108;UBERON:0002371,3.15e-57,76;UBERON:0001474,4.31e-52,82;UBERON:0002405,9.94e-51,93;UBERON:0004765,2.64e-46,90;UBERON:0001434,2.28e-40,100;UBERON:0003081,1.33e-29,203;UBERON:0000178,9.81e-21,15;UBERON:0000179,9.81e-21,15;UBERON:0000463,9.81e-21,15;UBERON:0002204,5.25e-19,167;UBERON:0002384,2.95e-14,371;UBERON:0000926,1.92e-13,315;UBERON:0004120,1.92e-13,315;UBERON:0006603,1.92e-13,315 | |||
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| ||
|short_description=p1@VSTM1 | |||
}} | }} |
Latest revision as of 20:59, 19 September 2015
Short description: | p1@VSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VSTM1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000338372, ENST00000376626, ENST00000447872, NM_198481, uc002qcw.3, uc002qcx.3, uc010erb.2_5end |
EntrezGene: | VSTM1 |
HGNC: | 29455 |
UniProt: | Q6UX27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.05e-78 | 98 |
blood island | 1.05e-78 | 98 |
hemolymphoid system | 6.16e-70 | 108 |
bone marrow | 3.15e-57 | 76 |
bone element | 4.31e-52 | 82 |
immune system | 9.94e-51 | 93 |
skeletal element | 2.64e-46 | 90 |
skeletal system | 2.28e-40 | 100 |
lateral plate mesoderm | 1.33e-29 | 203 |
blood | 9.81e-21 | 15 |
haemolymphatic fluid | 9.81e-21 | 15 |
organism substance | 9.81e-21 | 15 |
musculoskeletal system | 5.25e-19 | 167 |
connective tissue | 2.95e-14 | 371 |
mesoderm | 1.92e-13 | 315 |
mesoderm-derived structure | 1.92e-13 | 315 |
presumptive mesoderm | 1.92e-13 | 315 |