FF:10199-103F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005196 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005196 | |||
|accession_numbers=CAGE;DRX008704;DRR009576;DRZ001001;DRZ002386;DRZ012351;DRZ013736 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057117;DRR062876;DRZ007952 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001044,UBERON:0001831,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0001829,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0001456,UBERON:0002330,UBERON:0001567 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010199 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:97840743..97840786,+!p1@BHLHA15!2.67!470.41!BHLHA15;;chr11:34642612..34642646,+!p1@EHF!2.57!369.53!EHF;;chr14:37131058..37131139,+!p1@PAX9!2.35!225.33!PAX9;;chr11:34645791..34645836,+!p3@EHF!2.32!208.34!EHF;;chr22:38380543..38380569,-!p1@SOX10!2.28!188.60!SOX10;;chr11:129245526..129245553,+!p1@BARX2!2.23!168.32!BARX2;;chr11:34535297..34535317,-!p1@ELF5!2.21!162.28!ELF5;;chr7:14028488..14028516,-!p2@ETV1!2.19!167.77!ETV1;;chr6:34524049..34524089,-!p2@SPDEF!2.18!150.22!SPDEF;;chr22:29196433..29196445,-!p4@XBP1!2.13!148.58!XBP1;;chr6:34524093..34524135,-!p1@SPDEF!2.11!128.84!SPDEF;;chr2:122042770..122042785,-!p1@TFCP2L1!2.11!126.65!TFCP2L1;;chr11:34535332..34535347,-!p2@ELF5!2.01!101.43!ELF5;;chr17:80797886..80797906,-!p1@ZNF750!1.91!80.05!ZNF750;;chr1:151804244..151804310,-!p1@RORC!1.81!63.60!RORC;;chr5:134369879..134369898,-!p2@PITX1!1.73!52.63!PITX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.40!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.70!49.34!IRX2;;chr3:126076242..126076257,-!p1@KLF15!1.68!57.57!KLF15;;chrX:106960285..106960299,-!p1@TSC22D3!1.64!1088.84!TSC22D3;;chr1:201979743..201979762,+!p1@ELF3!1.63!41.67!ELF3;;chr22:29196492..29196503,-!p3@XBP1!1.58!55.92!XBP1;;chr14:37126765..37126799,+!p2@PAX9!1.58!37.28!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.56!130.49!SIX1;;chr11:34654104..34654118,+!p5@EHF!1.56!35.64!EHF;;chr6:34524025..34524045,-!p3@SPDEF!1.53!32.90!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.49!45.51!PITX1;;chr7:14026022..14026044,-!p7@ETV1!1.47!28.51!ETV1;;chr12:52449834..52449859,+!p16@NR4A1!1.46!27.96!NR4A1;;chr11:129245736..129245758,+!p2@BARX2!1.42!25.22!BARX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.09!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.39!32.90!KLF15;;chrX:107018836..107018862,-!p8@TSC22D3!1.39!23.58!TSC22D3;;chr11:34642656..34642667,+!p2@EHF!1.37!22.48!EHF;;chr9:14180778..14180808,-!p15@NFIB!1.35!21.38!NFIB;;chr9:129376201..129376225,+!p1@LMX1B!1.34!20.83!LMX1B;;chr1:209979467..209979494,-!p1@IRF6!1.33!23.03!IRF6;;chr9:129376233..129376251,+!p2@LMX1B!1.33!20.29!LMX1B;;chr17:70117153..70117174,+!p1@SOX9!1.32!200.66!SOX9;;chr1:10754477..10754517,-!p1@CASZ1!1.31!31.80!CASZ1;;chr22:29196030..29196075,-!p5@XBP1!1.31!24.67!XBP1;;chr11:111249993..111250006,-!p1@POU2AF1!1.31!19.19!POU2AF1;;chr17:53342311..53342400,+!p1@HLF!1.30!21.93!HLF;;chr2:45236540..45236577,-!p1@SIX2!1.29!18.64!SIX2;;chr2:19558373..19558392,-!p1@OSR1!1.28!48.79!OSR1;;chr1:153940716..153940739,+!p4@CREB3L4!1.28!18.09!CREB3L4;;chr12:52450779..52450791,+!p51@NR4A1!1.28!18.09!NR4A1;;chr11:65554528..65554546,+!p1@OVOL1!1.24!16.45!OVOL1;;chr8:102504651..102504683,+!p1@GRHL2!1.23!15.90!GRHL2;;chr19:13135582..13135600,+!p3@NFIX!1.23!15.90!NFIX;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.70!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.22!25.22!ZBTB16;;chrX:107019163..107019179,-!p7@TSC22D3!1.21!17.54!TSC22D3;;chr22:41763452..41763466,+!p2@TEF!1.20!14.80!TEF;;chr15:37392616..37392638,-!p2@MEIS2!1.19!45.51!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!1.18!23.58!FOXC1;;chrX:107018969..107019024,-!p6@TSC22D3!1.16!18.64!TSC22D3;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.90!NR4A1;;chr7:14025855..14025890,-!p6@ETV1!1.13!12.61!ETV1;;chr1:10856639..10856662,-!p2@CASZ1!1.13!12.61!CASZ1;;chr1:217250308..217250349,-!p9@ESRRG!1.13!12.61!ESRRG;;chr9:22447422..22447483,+!p1@DMRTA1!1.12!12.06!DMRTA1;;chr22:29196547..29196563,-!p2@XBP1!1.11!431.48!XBP1;;chr9:73029219..73029289,-!p2@KLF9!1.10!35.64!KLF9;;chr6:50786591..50786614,+!p1@TFAP2B!1.10!11.51!TFAP2B;;chr20:55204351..55204377,+!p1@TFAP2C!1.08!14.25!TFAP2C;;chr17:53344945..53344977,+!p2@HLF!1.08!10.97!HLF;;chr7:100065686..100065701,-!p2@TSC22D4!1.08!10.97!TSC22D4;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.25!SOX18;;chr3:12330560..12330579,+!p1@PPARG!1.06!12.06!PPARG;;chr3:114819101..114819121,-!p7@ZBTB20!1.06!10.42!ZBTB20;;chr7:14025816..14025842,-!p9@ETV1!1.06!10.42!ETV1;;chr16:1031762..1031781,+!p1@SOX8!1.06!10.42!SOX8;;chr9:73029018..73029042,-!p6@KLF9!1.04!13.16!KLF9;;chr10:8096631..8096660,+!p1@GATA3!1.04!12.06!GATA3;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.87!ZBTB16;;chr11:34535276..34535287,-!p3@ELF5!1.04!9.87!ELF5;;chr22:29196511..29196541,-!p1@XBP1!1.01!1039.50!XBP1;;chr7:14029283..14029311,-!p1@ETV1!1.01!50.44!ETV1;;chr2:66662249..66662267,+!p2@MEIS1!1.01!36.19!MEIS1;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.32!KDM5D;;chrY:2803415..2803468,+!p1@ZFY!1.01!9.32!ZFY;;chr19:50922187..50922204,+!p1@SPIB!1.01!9.32!SPIB;;chr1:201979703..201979721,+!p2@ELF3!1.01!9.32!ELF3;;chr7:14028526..14028538,-!p11@ETV1!1.01!9.32!ETV1;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.32!IRF8;;chr2:60780753..60780800,-!p1@BCL11A!1.00!45.51!BCL11A;;chr1:61548069..61548102,+!p3@NFIA!0.99!21.93!NFIA;;chr14:37126814..37126834,+!p4@PAX9!0.99!8.77!PAX9;;chr5:2751785..2751808,-!p2@IRX2!0.99!8.77!IRX2;;chr7:113726357..113726443,+!p1@FOXP2!0.96!14.25!FOXP2;;chr6:391743..391759,+!p1@IRF4!0.96!8.22!IRF4;;chr19:46801639..46801699,+!p1@HIF3A!0.96!8.22!HIF3A;;chr17:17726907..17726958,-!p2@SREBF1!0.95!50.99!SREBF1;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.97!MXI1;;chr15:37392534..37392562,-!p10@MEIS2!0.95!8.77!MEIS2;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.77!PRRX1;;chr11:65554563..65554576,+!p2@OVOL1!0.94!7.68!OVOL1;;chr14:37132241..37132304,+!p3@PAX9!0.94!7.68!PAX9;;chr20:50159198..50159299,-!p1@NFATC2!0.92!10.97!NFATC2;;chr19:13106214..13106382,+!p1@NFIX!0.91!174.35!NFIX;;chr1:164528410..164528428,+!p1@PBX1!0.91!56.47!PBX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.06!TFAP2A;;chr16:54320101..54320125,-!p4@IRX3!0.91!10.42!IRX3;;chr9:22446814..22446830,+!p4@DMRTA1!0.91!7.13!DMRTA1;;chr1:61924375..61924380,+!p6@NFIA!0.90!9.87!NFIA;;chr13:73633131..73633149,+!p1@KLF5!0.89!75.11!KLF5;;chr16:54320617..54320643,-!p3@IRX3!0.89!8.77!IRX3;;chr17:47439437..47439533,-!p1@ZNF652!0.88!55.92!ZNF652;;chr18:52989081..52989117,-!p7@TCF4!0.88!10.42!TCF4;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.22!TFAP2A;;chr7:14029312..14029325,-!p4@ETV1!0.88!8.22!ETV1;;chr6:10419768..10419819,-!p6@TFAP2A!0.88!6.58!TFAP2A;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.58!SPI1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.58!PEG3;;chr3:18466787..18466839,-!p1@SATB1!0.87!30.15!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.87!14.25!ZNF395;;chr1:61547894..61547968,+!p2@NFIA!0.86!19.19!NFIA;;chr9:73028332..73028385,-!p3@KLF9!0.85!22.48!KLF9;;chr19:46271505..46271575,-!p2@SIX5!0.85!16.45!SIX5;;chr2:66662895..66662907,+!p3@MEIS1!0.85!7.68!MEIS1;;chr2:68592406..68592424,+!p1@PLEK!0.85!6.03!PLEK;;chr17:53344980..53345011,+!p3@HLF!0.85!6.03!HLF;;chr17:80797863..80797874,-!p2@ZNF750!0.85!6.03!ZNF750;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.03!NFIX;;chr5:3595934..3595957,+!p2@IRX1!0.85!6.03!IRX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.85!6.03!TFAP2A;;chr2:27357446..27357475,-!p2@PREB!0.84!21.93!PREB;;chr19:13134457..13134462,+!p5@NFIX!0.84!10.97!NFIX;;chr16:54964740..54964789,+!p1@IRX5!0.84!8.77!IRX5;;chr19:3366570..3366619,+!p1@NFIC!0.82!193.53!NFIC;;chr19:49140609..49140643,-!p1@DBP!0.82!33.99!DBP;;chr10:43134001..43134026,-!p1@ZNF33B!0.82!26.86!ZNF33B;;chr18:22932080..22932170,-!p1@ZNF521!0.82!25.22!ZNF521;;chr2:10091815..10091864,+!p1@GRHL1!0.82!7.68!GRHL1;;chr12:26277956..26277980,-!p1@BHLHE41!0.81!20.83!BHLHE41;;chr19:17356189..17356221,-!p2@NR2F6!0.81!9.32!NR2F6;;chr15:37392593..37392607,-!p13@MEIS2!0.81!6.58!MEIS2;;chr3:25470156..25470227,+!p2@RARB!0.81!5.48!RARB;;chr6:1612300..1612324,+!p3@FOXC1!0.81!5.48!FOXC1;;chr11:34645764..34645775,+!p9@EHF!0.81!5.48!EHF;;chr20:51588873..51588953,+!p1@TSHZ2!0.80!7.13!TSHZ2;;chr6:126070769..126070801,+!p1@HEY2!0.79!6.03!HEY2;;chr19:33793430..33793447,-!p1@CEBPA!0.78!23.03!CEBPA;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.64!MEIS1;;chr20:2673383..2673441,+!p1@EBF4!0.78!8.22!EBF4;;chr10:8096772..8096787,+!p2@GATA3!0.78!6.03!GATA3;;chr3:114819124..114819200,-!p3@ZBTB20!0.77!12.06!ZBTB20;;chr15:37392703..37392717,-!p8@MEIS2!0.77!7.13!MEIS2;;chr19:13136130..13136165,+!p6@NFIX!0.77!6.58!NFIX;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.77!4.93!MEF2B;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.93!IRX1;;chr20:18038521..18038571,-!p1@OVOL2!0.77!4.93!OVOL2;;chr10:111985713..111985774,+!p2@MXI1!0.76!50.44!MXI1;;chr22:39916558..39916579,+!p1@ATF4!0.75!1506.06!ATF4;;chr3:24536253..24536328,-!p1@THRB!0.75!9.32!THRB;;chr9:14314566..14314618,-!p1@NFIB!0.74!60.31!NFIB;;chr6:108881012..108881034,+!p3@FOXO3!0.74!17.54!FOXO3;;chr1:61547781..61547809,+!p5@NFIA!0.74!9.87!NFIA;;chr17:47439354..47439383,-!p3@ZNF652!0.74!7.68!ZNF652;;chr19:13106383..13106423,+!p8@NFIX!0.74!6.03!NFIX;;chr1:8483878..8483907,-!p4@RERE!0.73!18.64!RERE;;chr15:37392576..37392589,-!p12@MEIS2!0.73!5.48!MEIS2;;chr19:57183114..57183145,-!p1@ZNF835!0.73!4.93!ZNF835;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.39!ZNF812;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.39!PRRX1;;chr1:217251619..217251658,-!p6@ESRRG!0.73!4.39!ESRRG;;chr16:54964899..54964914,+!p2@IRX5!0.73!4.39!IRX5;;chr12:52437488..52437507,+!p2@NR4A1!0.73!4.39!NR4A1;;chr22:24093154..24093183,-!p2@ZNF70!0.73!4.39!ZNF70;;chr2:231090433..231090469,+!p1@SP140!0.73!4.39!SP140;;chr2:60781201..60781258,-!p3@BCL11A!0.73!4.39!BCL11A;;chr5:134369848..134369853,-!p6@PITX1!0.73!4.39!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!0.73!4.39!TFAP2A;;chr6:108910863..108910912,+!p8@FOXO3!0.73!4.39!FOXO3;;chr6:1610178..1610190,+!p5@FOXC1!0.73!4.39!FOXC1;;chr6:1612219..1612239,+!p8@FOXC1!0.73!4.39!FOXC1;;chr7:14026063..14026091,-!p10@ETV1!0.73!4.39!ETV1;;chr7:50343634..50343717,+!p2@IKZF1!0.73!4.39!IKZF1;;chr8:55370487..55370503,+!p1@SOX17!0.73!4.39!SOX17;;chr8:93115274..93115323,-!p4@RUNX1T1!0.73!4.39!RUNX1T1;;chr8:123794102..123794160,+!p3@ZHX2!0.72!12.61!ZHX2;;chrX:106960249..106960260,-!p5@TSC22D3!0.72!7.13!TSC22D3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.48!L3MBTL4;;chr16:54320646..54320672,-!p2@IRX3!0.71!6.58!IRX3;;chrX:56258844..56258882,+!p1@KLF8!0.71!6.03!KLF8;;chr12:125003087..125003141,-!p4@NCOR2!0.71!5.48!NCOR2;;chr19:3359591..3359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| |expression_enrichment_score=chr7:97840743..97840786,+!p1@BHLHA15!2.67!470.41!BHLHA15;;chr11:34642612..34642646,+!p1@EHF!2.57!369.53!EHF;;chr14:37131058..37131139,+!p1@PAX9!2.35!225.33!PAX9;;chr11:34645791..34645836,+!p3@EHF!2.32!208.34!EHF;;chr22:38380543..38380569,-!p1@SOX10!2.28!188.60!SOX10;;chr11:129245526..129245553,+!p1@BARX2!2.23!168.32!BARX2;;chr11:34535297..34535317,-!p1@ELF5!2.21!162.28!ELF5;;chr7:14028488..14028516,-!p2@ETV1!2.19!167.77!ETV1;;chr6:34524049..34524089,-!p2@SPDEF!2.18!150.22!SPDEF;;chr22:29196433..29196445,-!p4@XBP1!2.13!148.58!XBP1;;chr6:34524093..34524135,-!p1@SPDEF!2.11!128.84!SPDEF;;chr2:122042770..122042785,-!p1@TFCP2L1!2.11!126.65!TFCP2L1;;chr11:34535332..34535347,-!p2@ELF5!2.01!101.43!ELF5;;chr17:80797886..80797906,-!p1@ZNF750!1.91!80.05!ZNF750;;chr1:151804244..151804310,-!p1@RORC!1.81!63.60!RORC;;chr5:134369879..134369898,-!p2@PITX1!1.73!52.63!PITX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.40!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.70!49.34!IRX2;;chr3:126076242..126076257,-!p1@KLF15!1.68!57.57!KLF15;;chrX:106960285..106960299,-!p1@TSC22D3!1.64!1088.84!TSC22D3;;chr1:201979743..201979762,+!p1@ELF3!1.63!41.67!ELF3;;chr22:29196492..29196503,-!p3@XBP1!1.58!55.92!XBP1;;chr14:37126765..37126799,+!p2@PAX9!1.58!37.28!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.56!130.49!SIX1;;chr11:34654104..34654118,+!p5@EHF!1.56!35.64!EHF;;chr6:34524025..34524045,-!p3@SPDEF!1.53!32.90!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.49!45.51!PITX1;;chr7:14026022..14026044,-!p7@ETV1!1.47!28.51!ETV1;;chr12:52449834..52449859,+!p16@NR4A1!1.46!27.96!NR4A1;;chr11:129245736..129245758,+!p2@BARX2!1.42!25.22!BARX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.09!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.39!32.90!KLF15;;chrX:107018836..107018862,-!p8@TSC22D3!1.39!23.58!TSC22D3;;chr11:34642656..34642667,+!p2@EHF!1.37!22.48!EHF;;chr9:14180778..14180808,-!p15@NFIB!1.35!21.38!NFIB;;chr9:129376201..129376225,+!p1@LMX1B!1.34!20.83!LMX1B;;chr1:209979467..209979494,-!p1@IRF6!1.33!23.03!IRF6;;chr9:129376233..129376251,+!p2@LMX1B!1.33!20.29!LMX1B;;chr17:70117153..70117174,+!p1@SOX9!1.32!200.66!SOX9;;chr1:10754477..10754517,-!p1@CASZ1!1.31!31.80!CASZ1;;chr22:29196030..29196075,-!p5@XBP1!1.31!24.67!XBP1;;chr11:111249993..111250006,-!p1@POU2AF1!1.31!19.19!POU2AF1;;chr17:53342311..53342400,+!p1@HLF!1.30!21.93!HLF;;chr2:45236540..45236577,-!p1@SIX2!1.29!18.64!SIX2;;chr2:19558373..19558392,-!p1@OSR1!1.28!48.79!OSR1;;chr1:153940716..153940739,+!p4@CREB3L4!1.28!18.09!CREB3L4;;chr12:52450779..52450791,+!p51@NR4A1!1.28!18.09!NR4A1;;chr11:65554528..65554546,+!p1@OVOL1!1.24!16.45!OVOL1;;chr8:102504651..102504683,+!p1@GRHL2!1.23!15.90!GRHL2;;chr19:13135582..13135600,+!p3@NFIX!1.23!15.90!NFIX;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.70!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.22!25.22!ZBTB16;;chrX:107019163..107019179,-!p7@TSC22D3!1.21!17.54!TSC22D3;;chr22:41763452..41763466,+!p2@TEF!1.20!14.80!TEF;;chr15:37392616..37392638,-!p2@MEIS2!1.19!45.51!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!1.18!23.58!FOXC1;;chrX:107018969..107019024,-!p6@TSC22D3!1.16!18.64!TSC22D3;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.90!NR4A1;;chr7:14025855..14025890,-!p6@ETV1!1.13!12.61!ETV1;;chr1:10856639..10856662,-!p2@CASZ1!1.13!12.61!CASZ1;;chr1:217250308..217250349,-!p9@ESRRG!1.13!12.61!ESRRG;;chr9:22447422..22447483,+!p1@DMRTA1!1.12!12.06!DMRTA1;;chr22:29196547..29196563,-!p2@XBP1!1.11!431.48!XBP1;;chr9:73029219..73029289,-!p2@KLF9!1.10!35.64!KLF9;;chr6:50786591..50786614,+!p1@TFAP2B!1.10!11.51!TFAP2B;;chr20:55204351..55204377,+!p1@TFAP2C!1.08!14.25!TFAP2C;;chr17:53344945..53344977,+!p2@HLF!1.08!10.97!HLF;;chr7:100065686..100065701,-!p2@TSC22D4!1.08!10.97!TSC22D4;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.25!SOX18;;chr3:12330560..12330579,+!p1@PPARG!1.06!12.06!PPARG;;chr3:114819101..114819121,-!p7@ZBTB20!1.06!10.42!ZBTB20;;chr7:14025816..14025842,-!p9@ETV1!1.06!10.42!ETV1;;chr16:1031762..1031781,+!p1@SOX8!1.06!10.42!SOX8;;chr9:73029018..73029042,-!p6@KLF9!1.04!13.16!KLF9;;chr10:8096631..8096660,+!p1@GATA3!1.04!12.06!GATA3;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.87!ZBTB16;;chr11:34535276..34535287,-!p3@ELF5!1.04!9.87!ELF5;;chr22:29196511..29196541,-!p1@XBP1!1.01!1039.50!XBP1;;chr7:14029283..14029311,-!p1@ETV1!1.01!50.44!ETV1;;chr2:66662249..66662267,+!p2@MEIS1!1.01!36.19!MEIS1;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.32!KDM5D;;chrY:2803415..2803468,+!p1@ZFY!1.01!9.32!ZFY;;chr19:50922187..50922204,+!p1@SPIB!1.01!9.32!SPIB;;chr1:201979703..201979721,+!p2@ELF3!1.01!9.32!ELF3;;chr7:14028526..14028538,-!p11@ETV1!1.01!9.32!ETV1;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.32!IRF8;;chr2:60780753..60780800,-!p1@BCL11A!1.00!45.51!BCL11A;;chr1:61548069..61548102,+!p3@NFIA!0.99!21.93!NFIA;;chr14:37126814..37126834,+!p4@PAX9!0.99!8.77!PAX9;;chr5:2751785..2751808,-!p2@IRX2!0.99!8.77!IRX2;;chr7:113726357..113726443,+!p1@FOXP2!0.96!14.25!FOXP2;;chr6:391743..391759,+!p1@IRF4!0.96!8.22!IRF4;;chr19:46801639..46801699,+!p1@HIF3A!0.96!8.22!HIF3A;;chr17:17726907..17726958,-!p2@SREBF1!0.95!50.99!SREBF1;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.97!MXI1;;chr15:37392534..37392562,-!p10@MEIS2!0.95!8.77!MEIS2;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.77!PRRX1;;chr11:65554563..65554576,+!p2@OVOL1!0.94!7.68!OVOL1;;chr14:37132241..37132304,+!p3@PAX9!0.94!7.68!PAX9;;chr20:50159198..50159299,-!p1@NFATC2!0.92!10.97!NFATC2;;chr19:13106214..13106382,+!p1@NFIX!0.91!174.35!NFIX;;chr1:164528410..164528428,+!p1@PBX1!0.91!56.47!PBX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.06!TFAP2A;;chr16:54320101..54320125,-!p4@IRX3!0.91!10.42!IRX3;;chr9:22446814..22446830,+!p4@DMRTA1!0.91!7.13!DMRTA1;;chr1:61924375..61924380,+!p6@NFIA!0.90!9.87!NFIA;;chr13:73633131..73633149,+!p1@KLF5!0.89!75.11!KLF5;;chr16:54320617..54320643,-!p3@IRX3!0.89!8.77!IRX3;;chr17:47439437..47439533,-!p1@ZNF652!0.88!55.92!ZNF652;;chr18:52989081..52989117,-!p7@TCF4!0.88!10.42!TCF4;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.22!TFAP2A;;chr7:14029312..14029325,-!p4@ETV1!0.88!8.22!ETV1;;chr6:10419768..10419819,-!p6@TFAP2A!0.88!6.58!TFAP2A;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.58!SPI1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.58!PEG3;;chr3:18466787..18466839,-!p1@SATB1!0.87!30.15!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.87!14.25!ZNF395;;chr1:61547894..61547968,+!p2@NFIA!0.86!19.19!NFIA;;chr9:73028332..73028385,-!p3@KLF9!0.85!22.48!KLF9;;chr19:46271505..46271575,-!p2@SIX5!0.85!16.45!SIX5;;chr2:66662895..66662907,+!p3@MEIS1!0.85!7.68!MEIS1;;chr2:68592406..68592424,+!p1@PLEK!0.85!6.03!PLEK;;chr17:53344980..53345011,+!p3@HLF!0.85!6.03!HLF;;chr17:80797863..80797874,-!p2@ZNF750!0.85!6.03!ZNF750;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.03!NFIX;;chr5:3595934..3595957,+!p2@IRX1!0.85!6.03!IRX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.85!6.03!TFAP2A;;chr2:27357446..27357475,-!p2@PREB!0.84!21.93!PREB;;chr19:13134457..13134462,+!p5@NFIX!0.84!10.97!NFIX;;chr16:54964740..54964789,+!p1@IRX5!0.84!8.77!IRX5;;chr19:3366570..3366619,+!p1@NFIC!0.82!193.53!NFIC;;chr19:49140609..49140643,-!p1@DBP!0.82!33.99!DBP;;chr10:43134001..43134026,-!p1@ZNF33B!0.82!26.86!ZNF33B;;chr18:22932080..22932170,-!p1@ZNF521!0.82!25.22!ZNF521;;chr2:10091815..10091864,+!p1@GRHL1!0.82!7.68!GRHL1;;chr12:26277956..26277980,-!p1@BHLHE41!0.81!20.83!BHLHE41;;chr19:17356189..17356221,-!p2@NR2F6!0.81!9.32!NR2F6;;chr15:37392593..37392607,-!p13@MEIS2!0.81!6.58!MEIS2;;chr3:25470156..25470227,+!p2@RARB!0.81!5.48!RARB;;chr6:1612300..1612324,+!p3@FOXC1!0.81!5.48!FOXC1;;chr11:34645764..34645775,+!p9@EHF!0.81!5.48!EHF;;chr20:51588873..51588953,+!p1@TSHZ2!0.80!7.13!TSHZ2;;chr6:126070769..126070801,+!p1@HEY2!0.79!6.03!HEY2;;chr19:33793430..33793447,-!p1@CEBPA!0.78!23.03!CEBPA;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.64!MEIS1;;chr20:2673383..2673441,+!p1@EBF4!0.78!8.22!EBF4;;chr10:8096772..8096787,+!p2@GATA3!0.78!6.03!GATA3;;chr3:114819124..114819200,-!p3@ZBTB20!0.77!12.06!ZBTB20;;chr15:37392703..37392717,-!p8@MEIS2!0.77!7.13!MEIS2;;chr19:13136130..13136165,+!p6@NFIX!0.77!6.58!NFIX;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.77!4.93!MEF2B;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.93!IRX1;;chr20:18038521..18038571,-!p1@OVOL2!0.77!4.93!OVOL2;;chr10:111985713..111985774,+!p2@MXI1!0.76!50.44!MXI1;;chr22:39916558..39916579,+!p1@ATF4!0.75!1506.06!ATF4;;chr3:24536253..24536328,-!p1@THRB!0.75!9.32!THRB;;chr9:14314566..14314618,-!p1@NFIB!0.74!60.31!NFIB;;chr6:108881012..108881034,+!p3@FOXO3!0.74!17.54!FOXO3;;chr1:61547781..61547809,+!p5@NFIA!0.74!9.87!NFIA;;chr17:47439354..47439383,-!p3@ZNF652!0.74!7.68!ZNF652;;chr19:13106383..13106423,+!p8@NFIX!0.74!6.03!NFIX;;chr1:8483878..8483907,-!p4@RERE!0.73!18.64!RERE;;chr15:37392576..37392589,-!p12@MEIS2!0.73!5.48!MEIS2;;chr19:57183114..57183145,-!p1@ZNF835!0.73!4.93!ZNF835;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.39!ZNF812;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.39!PRRX1;;chr1:217251619..217251658,-!p6@ESRRG!0.73!4.39!ESRRG;;chr16:54964899..54964914,+!p2@IRX5!0.73!4.39!IRX5;;chr12:52437488..52437507,+!p2@NR4A1!0.73!4.39!NR4A1;;chr22:24093154..24093183,-!p2@ZNF70!0.73!4.39!ZNF70;;chr2:231090433..231090469,+!p1@SP140!0.73!4.39!SP140;;chr2:60781201..60781258,-!p3@BCL11A!0.73!4.39!BCL11A;;chr5:134369848..134369853,-!p6@PITX1!0.73!4.39!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!0.73!4.39!TFAP2A;;chr6:108910863..108910912,+!p8@FOXO3!0.73!4.39!FOXO3;;chr6:1610178..1610190,+!p5@FOXC1!0.73!4.39!FOXC1;;chr6:1612219..1612239,+!p8@FOXC1!0.73!4.39!FOXC1;;chr7:14026063..14026091,-!p10@ETV1!0.73!4.39!ETV1;;chr7:50343634..50343717,+!p2@IKZF1!0.73!4.39!IKZF1;;chr8:55370487..55370503,+!p1@SOX17!0.73!4.39!SOX17;;chr8:93115274..93115323,-!p4@RUNX1T1!0.73!4.39!RUNX1T1;;chr8:123794102..123794160,+!p3@ZHX2!0.72!12.61!ZHX2;;chrX:106960249..106960260,-!p5@TSC22D3!0.72!7.13!TSC22D3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.48!L3MBTL4;;chr16:54320646..54320672,-!p2@IRX3!0.71!6.58!IRX3;;chrX:56258844..56258882,+!p1@KLF8!0.71!6.03!KLF8;;chr12:125003087..125003141,-!p4@NCOR2!0.71!5.48!NCOR2;;chr19:3359591..3359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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001829;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008801,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parotid%2520gland%252c%2520adult.CNhs12849.10199-103F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10199-103F1 | |id=FF:10199-103F1 | ||
|is_a=EFO:0002091;;FF:0010199 | |is_a=EFO:0002091;;FF:0010199 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12849 | |||
|library_id_phase_based=2:CNhs12849 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10199 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10199 | |||
|name=parotid gland, adult | |name=parotid gland, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12849,LSID973,release012,COMPLETED | |profile_hcage=CNhs12849,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.321498084569989,0,0,0,0,0,-0.160318030086386,0.18984326733154,0.580381561965261,0.528159881774551,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168175074221561,0,0,0,0,0.18984326733154,0.534453494045392,0,0,0.0568866775526773,0,0,0,0,0,0,0,0,0,0,0,0,0.340501367585209,0.27386097390907,0,0,0,0,0,0,0,0.13653402117216,0,0,0,0.18984326733154,0,0,0.18984326733154,0.676378592906175,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18984326733154,0,0,0,0,0,0,0,0,0,0,0.0272827387154759,0,0,0,-0.0584468268118252,0.0753132162113555,0,0,0,0,-0.0980353512377064,0.396253056736217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0643754483625335,0,0,0,0.338807015340659,0.557990965074661,0,0,0.0334881333646727,0,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234190-50 | |rna_catalog_number=R1234190-50 | ||
| Line 57: | Line 80: | ||
|rna_tube_id=103F1 | |rna_tube_id=103F1 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |rnaseq_library_id=RDhi10060 | ||
|sample_age=23 | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 73: | Line 98: | ||
|sample_id=10199 | |sample_id=10199 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
| Line 79: | Line 104: | ||
|top_motifs=ZIC1..3:9.14687632592;STAT1,3:5.44637765534;ATF6:2.70923967692;SOX5:2.34769363654;SNAI1..3:2.31762648845;POU6F1:2.11445765184;ARID5B:2.04260196584;ZEB1:1.94899684663;ALX1:1.8113650268;PAX6:1.71190842918;XBP1:1.68072742916;TFAP4:1.55904160528;GLI1..3:1.517922809;HOX{A6,A7,B6,B7}:1.50905477435;LMO2:1.45068782967;T:1.44688191094;FOXA2:1.35130653729;MYOD1:1.3296432267;FOXQ1:1.32947420672;IKZF1:1.30661728523;AR:1.26398747133;HAND1,2:1.19819756993;AIRE:1.19267410567;NFIL3:1.04595188105;TGIF1:0.958441176657;TFAP2{A,C}:0.957723389729;ESRRA:0.914564498721;TLX2:0.904835025065;CDC5L:0.896900278397;CUX2:0.894505125553;TBP:0.884123722363;TFCP2:0.860348051639;MEF2{A,B,C,D}:0.822575285258;NFIX:0.783408669508;TLX1..3_NFIC{dimer}:0.762967811112;POU2F1..3:0.728572005623;FOX{I1,J2}:0.700342080761;TBX4,5:0.683450818572;HES1:0.67627339824;FOX{D1,D2}:0.675322042212;HIC1:0.664216128354;SP1:0.646893184299;NR5A1,2:0.643961734359;NANOG:0.638458962208;NR1H4:0.616409986006;IRF7:0.578221474888;FOXL1:0.555727126021;FOX{F1,F2,J1}:0.548270365842;BREu{core}:0.530287192235;MTF1:0.52499991035;MTE{core}:0.494210154939;MAFB:0.486784219954;MYFfamily:0.484853999483;EP300:0.423074309325;CEBPA,B_DDIT3:0.414343205534;SPZ1:0.4020053689;XCPE1{core}:0.371034595136;ESR1:0.351961584092;FOXO1,3,4:0.327513372095;FOXN1:0.326244424536;NKX2-3_NKX2-5:0.324881430178;HMX1:0.321189463967;GTF2I:0.311591878488;NHLH1,2:0.287341956581;TFAP2B:0.286108771376;HIF1A:0.267103092671;EBF1:0.259114754251;PATZ1:0.254751400479;MAZ:0.250190548295;DMAP1_NCOR{1,2}_SMARC:0.247367105247;NR6A1:0.238698281638;ZNF148:0.223866085788;LHX3,4:0.219308787642;NFATC1..3:0.215856494243;NKX2-1,4:0.172524647631;PBX1:0.163778681249;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.159534113102;REST:0.143619316507;GATA6:0.136359257956;ALX4:0.135124669913;GCM1,2:0.113715334214;ETS1,2:0.0955043026305;GTF2A1,2:0.0764169477658;RXRA_VDR{dimer}:0.0607820008847;SPI1:0.0410047433921;MYBL2:0.0137155011941;FOXD3:0.00241141243362;ZNF143:0.000344136596265;HOX{A4,D4}:-0.00129142097461;VSX1,2:-0.0122366354315;IRF1,2:-0.0170704987315;ZBTB6:-0.0358825322816;SOX2:-0.0467323054664;ATF2:-0.0497124436113;POU5F1:-0.0525277273996;ZNF423:-0.0542171064074;HNF1A:-0.0811127915805;RUNX1..3:-0.099139349671;CRX:-0.103612729216;TEAD1:-0.109415170078;PRDM1:-0.113368431576;PAX5:-0.136286146821;bHLH_family:-0.141773426223;ZNF384:-0.15872582658;BPTF:-0.173401652324;MED-1{core}:-0.180471309405;HNF4A_NR2F1,2:-0.180865398341;GATA4:-0.182824793811;SRF:-0.187372035654;PDX1:-0.212149851731;SPIB:-0.2130768684;NKX3-1:-0.238806817439;RBPJ:-0.243398662418;HOXA9_MEIS1:-0.264714732859;NKX6-1,2:-0.269224320568;KLF4:-0.282935474662;ZNF238:-0.285399468887;YY1:-0.288582246237;NFKB1_REL_RELA:-0.306510960663;ELF1,2,4:-0.324382942569;DBP:-0.354640046982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.367301235386;SOX17:-0.368960577092;ZFP161:-0.388531257263;GFI1B:-0.418684404261;NKX3-2:-0.420415430537;MZF1:-0.432387871861;SOX{8,9,10}:-0.453677690708;SMAD1..7,9:-0.488436164082;UFEwm:-0.509747460313;STAT2,4,6:-0.51915892206;RREB1:-0.519161829098;HLF:-0.519579604656;TAL1_TCF{3,4,12}:-0.524224645305;ADNP_IRX_SIX_ZHX:-0.54407029223;FOSL2:-0.545931774674;IKZF2:-0.550283118617;FOS_FOS{B,L1}_JUN{B,D}:-0.569648778579;EGR1..3:-0.593769926387;CDX1,2,4:-0.617437369518;TP53:-0.61851213644;FOXM1:-0.64152736922;SREBF1,2:-0.649260102559;NFY{A,B,C}:-0.663453510333;FOXP3:-0.684722934016;NRF1:-0.709717098763;BACH2:-0.710560220904;OCT4_SOX2{dimer}:-0.723592196105;NANOG{mouse}:-0.744045897283;NFE2L1:-0.747850395069;HOX{A5,B5}:-0.748791134094;TOPORS:-0.750421219661;PRRX1,2:-0.763299985615;FOXP1:-0.785119620892;NFE2:-0.791320599353;JUN:-0.793545663142;NKX2-2,8:-0.808299930007;RFX1:-0.840278227405;LEF1_TCF7_TCF7L1,2:-0.841133540987;GFI1:-0.854433255371;GZF1:-0.863566511576;ELK1,4_GABP{A,B1}:-0.892457097783;NR3C1:-0.902150534523;ONECUT1,2:-0.921230699209;ZBTB16:-0.921595617164;TEF:-0.929316278983;ATF5_CREB3:-0.964809934401;RXR{A,B,G}:-0.974028241859;ATF4:-0.983551232357;CREB1:-1.04982338563;RFX2..5_RFXANK_RFXAP:-1.06276770632;RORA:-1.08212569033;HBP1_HMGB_SSRP1_UBTF:-1.12842976475;PPARG:-1.1300648506;NFE2L2:-1.14847805466;PAX4:-1.15331562536;STAT5{A,B}:-1.16401311574;EVI1:-1.20255356925;AHR_ARNT_ARNT2:-1.23725467257;EN1,2:-1.28880520194;PAX3,7:-1.29448684595;PAX2:-1.33613820928;TFDP1:-1.35422645658;E2F1..5:-1.36580147311;POU3F1..4:-1.44483179941;HSF1,2:-1.45242123681;POU1F1:-1.47250562458;PAX1,9:-1.53777937345;PITX1..3:-1.53991899291;MYB:-1.55820731468;PAX8:-1.60995788552;HMGA1,2:-1.82381794812 | |top_motifs=ZIC1..3:9.14687632592;STAT1,3:5.44637765534;ATF6:2.70923967692;SOX5:2.34769363654;SNAI1..3:2.31762648845;POU6F1:2.11445765184;ARID5B:2.04260196584;ZEB1:1.94899684663;ALX1:1.8113650268;PAX6:1.71190842918;XBP1:1.68072742916;TFAP4:1.55904160528;GLI1..3:1.517922809;HOX{A6,A7,B6,B7}:1.50905477435;LMO2:1.45068782967;T:1.44688191094;FOXA2:1.35130653729;MYOD1:1.3296432267;FOXQ1:1.32947420672;IKZF1:1.30661728523;AR:1.26398747133;HAND1,2:1.19819756993;AIRE:1.19267410567;NFIL3:1.04595188105;TGIF1:0.958441176657;TFAP2{A,C}:0.957723389729;ESRRA:0.914564498721;TLX2:0.904835025065;CDC5L:0.896900278397;CUX2:0.894505125553;TBP:0.884123722363;TFCP2:0.860348051639;MEF2{A,B,C,D}:0.822575285258;NFIX:0.783408669508;TLX1..3_NFIC{dimer}:0.762967811112;POU2F1..3:0.728572005623;FOX{I1,J2}:0.700342080761;TBX4,5:0.683450818572;HES1:0.67627339824;FOX{D1,D2}:0.675322042212;HIC1:0.664216128354;SP1:0.646893184299;NR5A1,2:0.643961734359;NANOG:0.638458962208;NR1H4:0.616409986006;IRF7:0.578221474888;FOXL1:0.555727126021;FOX{F1,F2,J1}:0.548270365842;BREu{core}:0.530287192235;MTF1:0.52499991035;MTE{core}:0.494210154939;MAFB:0.486784219954;MYFfamily:0.484853999483;EP300:0.423074309325;CEBPA,B_DDIT3:0.414343205534;SPZ1:0.4020053689;XCPE1{core}:0.371034595136;ESR1:0.351961584092;FOXO1,3,4:0.327513372095;FOXN1:0.326244424536;NKX2-3_NKX2-5:0.324881430178;HMX1:0.321189463967;GTF2I:0.311591878488;NHLH1,2:0.287341956581;TFAP2B:0.286108771376;HIF1A:0.267103092671;EBF1:0.259114754251;PATZ1:0.254751400479;MAZ:0.250190548295;DMAP1_NCOR{1,2}_SMARC:0.247367105247;NR6A1:0.238698281638;ZNF148:0.223866085788;LHX3,4:0.219308787642;NFATC1..3:0.215856494243;NKX2-1,4:0.172524647631;PBX1:0.163778681249;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.159534113102;REST:0.143619316507;GATA6:0.136359257956;ALX4:0.135124669913;GCM1,2:0.113715334214;ETS1,2:0.0955043026305;GTF2A1,2:0.0764169477658;RXRA_VDR{dimer}:0.0607820008847;SPI1:0.0410047433921;MYBL2:0.0137155011941;FOXD3:0.00241141243362;ZNF143:0.000344136596265;HOX{A4,D4}:-0.00129142097461;VSX1,2:-0.0122366354315;IRF1,2:-0.0170704987315;ZBTB6:-0.0358825322816;SOX2:-0.0467323054664;ATF2:-0.0497124436113;POU5F1:-0.0525277273996;ZNF423:-0.0542171064074;HNF1A:-0.0811127915805;RUNX1..3:-0.099139349671;CRX:-0.103612729216;TEAD1:-0.109415170078;PRDM1:-0.113368431576;PAX5:-0.136286146821;bHLH_family:-0.141773426223;ZNF384:-0.15872582658;BPTF:-0.173401652324;MED-1{core}:-0.180471309405;HNF4A_NR2F1,2:-0.180865398341;GATA4:-0.182824793811;SRF:-0.187372035654;PDX1:-0.212149851731;SPIB:-0.2130768684;NKX3-1:-0.238806817439;RBPJ:-0.243398662418;HOXA9_MEIS1:-0.264714732859;NKX6-1,2:-0.269224320568;KLF4:-0.282935474662;ZNF238:-0.285399468887;YY1:-0.288582246237;NFKB1_REL_RELA:-0.306510960663;ELF1,2,4:-0.324382942569;DBP:-0.354640046982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.367301235386;SOX17:-0.368960577092;ZFP161:-0.388531257263;GFI1B:-0.418684404261;NKX3-2:-0.420415430537;MZF1:-0.432387871861;SOX{8,9,10}:-0.453677690708;SMAD1..7,9:-0.488436164082;UFEwm:-0.509747460313;STAT2,4,6:-0.51915892206;RREB1:-0.519161829098;HLF:-0.519579604656;TAL1_TCF{3,4,12}:-0.524224645305;ADNP_IRX_SIX_ZHX:-0.54407029223;FOSL2:-0.545931774674;IKZF2:-0.550283118617;FOS_FOS{B,L1}_JUN{B,D}:-0.569648778579;EGR1..3:-0.593769926387;CDX1,2,4:-0.617437369518;TP53:-0.61851213644;FOXM1:-0.64152736922;SREBF1,2:-0.649260102559;NFY{A,B,C}:-0.663453510333;FOXP3:-0.684722934016;NRF1:-0.709717098763;BACH2:-0.710560220904;OCT4_SOX2{dimer}:-0.723592196105;NANOG{mouse}:-0.744045897283;NFE2L1:-0.747850395069;HOX{A5,B5}:-0.748791134094;TOPORS:-0.750421219661;PRRX1,2:-0.763299985615;FOXP1:-0.785119620892;NFE2:-0.791320599353;JUN:-0.793545663142;NKX2-2,8:-0.808299930007;RFX1:-0.840278227405;LEF1_TCF7_TCF7L1,2:-0.841133540987;GFI1:-0.854433255371;GZF1:-0.863566511576;ELK1,4_GABP{A,B1}:-0.892457097783;NR3C1:-0.902150534523;ONECUT1,2:-0.921230699209;ZBTB16:-0.921595617164;TEF:-0.929316278983;ATF5_CREB3:-0.964809934401;RXR{A,B,G}:-0.974028241859;ATF4:-0.983551232357;CREB1:-1.04982338563;RFX2..5_RFXANK_RFXAP:-1.06276770632;RORA:-1.08212569033;HBP1_HMGB_SSRP1_UBTF:-1.12842976475;PPARG:-1.1300648506;NFE2L2:-1.14847805466;PAX4:-1.15331562536;STAT5{A,B}:-1.16401311574;EVI1:-1.20255356925;AHR_ARNT_ARNT2:-1.23725467257;EN1,2:-1.28880520194;PAX3,7:-1.29448684595;PAX2:-1.33613820928;TFDP1:-1.35422645658;E2F1..5:-1.36580147311;POU3F1..4:-1.44483179941;HSF1,2:-1.45242123681;POU1F1:-1.47250562458;PAX1,9:-1.53777937345;PITX1..3:-1.53991899291;MYB:-1.55820731468;PAX8:-1.60995788552;HMGA1,2:-1.82381794812 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10199-103F1;search_select_hide=table117:FF:10199-103F1 | |||
}} | }} | ||
Latest revision as of 13:55, 3 June 2020
| Name: | parotid gland, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12849 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12849
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12849
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.459 |
| 10 | 10 | 0.278 |
| 100 | 100 | 0.91 |
| 101 | 101 | 0.828 |
| 102 | 102 | 0.805 |
| 103 | 103 | 0.588 |
| 104 | 104 | 0.279 |
| 105 | 105 | 0.703 |
| 106 | 106 | 0.127 |
| 107 | 107 | 0.0898 |
| 108 | 108 | 0.305 |
| 109 | 109 | 0.836 |
| 11 | 11 | 0.71 |
| 110 | 110 | 0.726 |
| 111 | 111 | 0.463 |
| 112 | 112 | 0.171 |
| 113 | 113 | 0.706 |
| 114 | 114 | 0.594 |
| 115 | 115 | 0.992 |
| 116 | 116 | 0.841 |
| 117 | 117 | 0.415 |
| 118 | 118 | 0.522 |
| 119 | 119 | 0.304 |
| 12 | 12 | 0.108 |
| 120 | 120 | 0.0274 |
| 121 | 121 | 0.479 |
| 122 | 122 | 0.478 |
| 123 | 123 | 0.798 |
| 124 | 124 | 0.737 |
| 125 | 125 | 0.826 |
| 126 | 126 | 0.0852 |
| 127 | 127 | 0.388 |
| 128 | 128 | 0.0848 |
| 129 | 129 | 0.559 |
| 13 | 13 | 0.715 |
| 130 | 130 | 0.0741 |
| 131 | 131 | 0.874 |
| 132 | 132 | 0.219 |
| 133 | 133 | 0.0867 |
| 134 | 134 | 0.154 |
| 135 | 135 | 0.534 |
| 136 | 136 | 0.778 |
| 137 | 137 | 0.887 |
| 138 | 138 | 0.657 |
| 139 | 139 | 0.383 |
| 14 | 14 | 0.552 |
| 140 | 140 | 0.798 |
| 141 | 141 | 0.355 |
| 142 | 142 | 0.524 |
| 143 | 143 | 0.806 |
| 144 | 144 | 0.748 |
| 145 | 145 | 0.528 |
| 146 | 146 | 0.204 |
| 147 | 147 | 0.761 |
| 148 | 148 | 0.916 |
| 149 | 149 | 0.181 |
| 15 | 15 | 0.487 |
| 150 | 150 | 0.801 |
| 151 | 151 | 0.52 |
| 152 | 152 | 0.047 |
| 153 | 153 | 0.0786 |
| 154 | 154 | 0.97 |
| 155 | 155 | 0.644 |
| 156 | 156 | 0.168 |
| 157 | 157 | 0.314 |
| 158 | 158 | 0.62 |
| 159 | 159 | 0.799 |
| 16 | 16 | 0.439 |
| 160 | 160 | 0.501 |
| 161 | 161 | 0.733 |
| 162 | 162 | 0.185 |
| 163 | 163 | 0.8 |
| 164 | 164 | 0.269 |
| 165 | 165 | 0.932 |
| 166 | 166 | 0.907 |
| 167 | 167 | 0.548 |
| 168 | 168 | 0.234 |
| 169 | 169 | 0.0368 |
| 17 | 17 | 0.4 |
| 18 | 18 | 0.953 |
| 19 | 19 | 0.293 |
| 2 | 2 | 5.35026e-6 |
| 20 | 20 | 0.321 |
| 21 | 21 | 0.351 |
| 22 | 22 | 0.317 |
| 23 | 23 | 0.35 |
| 24 | 24 | 0.458 |
| 25 | 25 | 0.985 |
| 26 | 26 | 0.384 |
| 27 | 27 | 0.156 |
| 28 | 28 | 0.978 |
| 29 | 29 | 0.837 |
| 3 | 3 | 0.941 |
| 30 | 30 | 0.00871 |
| 31 | 31 | 0.373 |
| 32 | 32 | 9.13836e-8 |
| 33 | 33 | 0.712 |
| 34 | 34 | 0.768 |
| 35 | 35 | 0.957 |
| 36 | 36 | 0.00347 |
| 37 | 37 | 0.916 |
| 38 | 38 | 0.43 |
| 39 | 39 | 0.217 |
| 4 | 4 | 0.533 |
| 40 | 40 | 0.886 |
| 41 | 41 | 0.294 |
| 42 | 42 | 0.8 |
| 43 | 43 | 0.554 |
| 44 | 44 | 0.0299 |
| 45 | 45 | 0.0881 |
| 46 | 46 | 0.603 |
| 47 | 47 | 0.996 |
| 48 | 48 | 0.782 |
| 49 | 49 | 0.859 |
| 5 | 5 | 0.0524 |
| 50 | 50 | 0.297 |
| 51 | 51 | 0.734 |
| 52 | 52 | 0.224 |
| 53 | 53 | 0.959 |
| 54 | 54 | 0.566 |
| 55 | 55 | 0.632 |
| 56 | 56 | 0.539 |
| 57 | 57 | 0.64 |
| 58 | 58 | 0.565 |
| 59 | 59 | 0.0398 |
| 6 | 6 | 0.8 |
| 60 | 60 | 0.145 |
| 61 | 61 | 0.903 |
| 62 | 62 | 0.686 |
| 63 | 63 | 0.112 |
| 64 | 64 | 0.851 |
| 65 | 65 | 0.294 |
| 66 | 66 | 0.379 |
| 67 | 67 | 0.686 |
| 68 | 68 | 0.406 |
| 69 | 69 | 0.609 |
| 7 | 7 | 0.538 |
| 70 | 70 | 0.132 |
| 71 | 71 | 0.884 |
| 72 | 72 | 0.735 |
| 73 | 73 | 0.221 |
| 74 | 74 | 0.663 |
| 75 | 75 | 0.894 |
| 76 | 76 | 0.266 |
| 77 | 77 | 0.142 |
| 78 | 78 | 0.426 |
| 79 | 79 | 0.411 |
| 8 | 8 | 0.462 |
| 80 | 80 | 0.803 |
| 81 | 81 | 0.637 |
| 82 | 82 | 0.281 |
| 83 | 83 | 0.639 |
| 84 | 84 | 0.651 |
| 85 | 85 | 0.0283 |
| 86 | 86 | 0.651 |
| 87 | 87 | 0.733 |
| 88 | 88 | 0.786 |
| 89 | 89 | 0.193 |
| 9 | 9 | 0.696 |
| 90 | 90 | 0.415 |
| 91 | 91 | 0.652 |
| 92 | 92 | 0.257 |
| 93 | 93 | 0.902 |
| 94 | 94 | 0.194 |
| 95 | 95 | 0.288 |
| 96 | 96 | 0.776 |
| 97 | 97 | 0.646 |
| 98 | 98 | 0.67 |
| 99 | 99 | 0.265 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12849
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0001831 (parotid gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0001829 (major salivary gland)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0004089 (midface)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0001456 (face)
0002330 (exocrine system)
0001567 (cheek)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010199 (human parotid gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008801 (parotid gland primordium)
UBERON:0010316 (germ layer / neural crest)
