FF:10642-109A3: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	carcinosarcoma cell line:JHUCS-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11747
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	uterus
dev stage	NA
sex	female
age	56
cell type	unclassifiable
cell line	JHUCS-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004911

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11747		CAGE		DRX007844		DRR008716

Accession ID Hg19

Library id		BAM		CTSS
CNhs11747		DRZ000141		DRZ001526

Accession ID Hg38

Library id		BAM		CTSS
CNhs11747		DRZ011491		DRZ012876

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0481
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.298
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.572
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.067
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0196
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0953
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0738
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0267
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0695
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0695
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.558
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.461
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0695
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11747

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.84688e-6
MA0003.1	MA0003.1	0.127
MA0004.1	MA0004.1	0.968
MA0006.1	MA0006.1	0.284
MA0007.1	MA0007.1	0.594
MA0009.1	MA0009.1	0.604
MA0014.1	MA0014.1	0.794
MA0017.1	MA0017.1	0.0105
MA0018.2	MA0018.2	0.324
MA0019.1	MA0019.1	0.492
MA0024.1	MA0024.1	1.84184e-6
MA0025.1	MA0025.1	0.956
MA0027.1	MA0027.1	0.596
MA0028.1	MA0028.1	0.406
MA0029.1	MA0029.1	0.995
MA0030.1	MA0030.1	0.211
MA0031.1	MA0031.1	0.025
MA0035.2	MA0035.2	0.142
MA0038.1	MA0038.1	0.00301
MA0039.2	MA0039.2	0.365
MA0040.1	MA0040.1	0.183
MA0041.1	MA0041.1	0.331
MA0042.1	MA0042.1	0.422
MA0043.1	MA0043.1	0.718
MA0046.1	MA0046.1	0.0784
MA0047.2	MA0047.2	0.00276
MA0048.1	MA0048.1	0.497
MA0050.1	MA0050.1	1.00426e-4
MA0051.1	MA0051.1	0.0269
MA0052.1	MA0052.1	0.00777
MA0055.1	MA0055.1	0.747
MA0057.1	MA0057.1	0.224
MA0058.1	MA0058.1	0.874
MA0059.1	MA0059.1	0.494
MA0060.1	MA0060.1	9.63325e-9
MA0061.1	MA0061.1	0.0121
MA0062.2	MA0062.2	0.929
MA0065.2	MA0065.2	0.00224
MA0066.1	MA0066.1	0.0352
MA0067.1	MA0067.1	0.92
MA0068.1	MA0068.1	0.932
MA0069.1	MA0069.1	0.944
MA0070.1	MA0070.1	0.0415
MA0071.1	MA0071.1	0.551
MA0072.1	MA0072.1	0.528
MA0073.1	MA0073.1	0.559
MA0074.1	MA0074.1	0.184
MA0076.1	MA0076.1	0.119
MA0077.1	MA0077.1	0.273
MA0078.1	MA0078.1	0.527
MA0079.2	MA0079.2	0.665
MA0080.2	MA0080.2	7.176e-14
MA0081.1	MA0081.1	0.0522
MA0083.1	MA0083.1	0.0631
MA0084.1	MA0084.1	0.337
MA0087.1	MA0087.1	0.124
MA0088.1	MA0088.1	0.815
MA0090.1	MA0090.1	0.0137
MA0091.1	MA0091.1	0.613
MA0092.1	MA0092.1	0.199
MA0093.1	MA0093.1	0.933
MA0099.2	MA0099.2	7.05528e-21
MA0100.1	MA0100.1	0.221
MA0101.1	MA0101.1	0.0714
MA0102.2	MA0102.2	0.01
MA0103.1	MA0103.1	0.256
MA0104.2	MA0104.2	0.682
MA0105.1	MA0105.1	0.00576
MA0106.1	MA0106.1	0.15
MA0107.1	MA0107.1	0.0227
MA0108.2	MA0108.2	0.111
MA0111.1	MA0111.1	0.584
MA0112.2	MA0112.2	7.71818e-5
MA0113.1	MA0113.1	0.0715
MA0114.1	MA0114.1	0.0377
MA0115.1	MA0115.1	0.529
MA0116.1	MA0116.1	0.0122
MA0117.1	MA0117.1	0.815
MA0119.1	MA0119.1	0.0744
MA0122.1	MA0122.1	0.182
MA0124.1	MA0124.1	0.383
MA0125.1	MA0125.1	0.788
MA0131.1	MA0131.1	0.399
MA0135.1	MA0135.1	0.286
MA0136.1	MA0136.1	4.75598e-13
MA0137.2	MA0137.2	0.00888
MA0138.2	MA0138.2	0.94
MA0139.1	MA0139.1	0.0591
MA0140.1	MA0140.1	0.0582
MA0141.1	MA0141.1	0.0466
MA0142.1	MA0142.1	0.578
MA0143.1	MA0143.1	0.438
MA0144.1	MA0144.1	0.00303
MA0145.1	MA0145.1	0.0601
MA0146.1	MA0146.1	0.103
MA0147.1	MA0147.1	0.912
MA0148.1	MA0148.1	0.01
MA0149.1	MA0149.1	0.0213
MA0150.1	MA0150.1	7.92747e-5
MA0152.1	MA0152.1	0.983
MA0153.1	MA0153.1	0.209
MA0154.1	MA0154.1	0.00684
MA0155.1	MA0155.1	0.306
MA0156.1	MA0156.1	1.8093e-5
MA0157.1	MA0157.1	0.0134
MA0159.1	MA0159.1	0.0109
MA0160.1	MA0160.1	0.0869
MA0162.1	MA0162.1	0.227
MA0163.1	MA0163.1	9.09081e-5
MA0164.1	MA0164.1	0.773
MA0258.1	MA0258.1	0.00827
MA0259.1	MA0259.1	0.629

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11747

Novel motif	Logo	P-value
1	1	0.202
10	10	0.188
100	100	0.951
101	101	0.889
102	102	0.592
103	103	0.066
104	104	0.357
105	105	0.148
106	106	0.0137
107	107	0.125
108	108	0.593
109	109	0.0314
11	11	0.0996
110	110	0.386
111	111	0.833
112	112	0.0482
113	113	0.36
114	114	0.0151
115	115	0.824
116	116	0.626
117	117	0.164
118	118	0.431
119	119	0.167
12	12	0.321
120	120	0.309
121	121	0.905
122	122	0.75
123	123	0.695
124	124	0.733
125	125	0.912
126	126	0.172
127	127	0.102
128	128	0.0549
129	129	0.2
13	13	0.313
130	130	0.652
131	131	0.277
132	132	0.9
133	133	0.265
134	134	0.62
135	135	0.0691
136	136	0.859
137	137	0.191
138	138	0.334
139	139	0.046
14	14	0.529
140	140	0.76
141	141	0.5
142	142	0.557
143	143	0.00381
144	144	0.943
145	145	0.282
146	146	0.785
147	147	0.773
148	148	0.0324
149	149	0.0248
15	15	0.169
150	150	0.549
151	151	0.375
152	152	0.0253
153	153	0.799
154	154	0.912
155	155	0.832
156	156	0.784
157	157	0.654
158	158	0.941
159	159	0.017
16	16	0.204
160	160	0.272
161	161	0.767
162	162	0.604
163	163	0.929
164	164	0.434
165	165	0.174
166	166	0.825
167	167	0.724
168	168	0.304
169	169	0.0164
17	17	0.114
18	18	0.433
19	19	0.158
2	2	0.342
20	20	0.78
21	21	0.796
22	22	0.132
23	23	0.00656
24	24	0.188
25	25	0.45
26	26	0.32
27	27	0.119
28	28	0.927
29	29	0.368
3	3	0.086
30	30	0.466
31	31	0.579
32	32	0.0331
33	33	0.453
34	34	0.473
35	35	0.46
36	36	0.192
37	37	0.0331
38	38	0.308
39	39	0.235
4	4	0.937
40	40	0.229
41	41	0.105
42	42	0.295
43	43	0.133
44	44	0.403
45	45	0.373
46	46	0.263
47	47	0.344
48	48	0.288
49	49	0.228
5	5	0.0841
50	50	0.443
51	51	0.319
52	52	0.288
53	53	0.449
54	54	0.185
55	55	0.0111
56	56	0.464
57	57	0.578
58	58	0.186
59	59	0.0317
6	6	0.745
60	60	0.0598
61	61	0.352
62	62	0.0553
63	63	0.131
64	64	0.726
65	65	0.137
66	66	0.645
67	67	0.471
68	68	0.789
69	69	0.523
7	7	0.223
70	70	0.024
71	71	0.143
72	72	0.138
73	73	0.0292
74	74	0.38
75	75	0.0984
76	76	0.865
77	77	0.0622
78	78	0.174
79	79	0.324
8	8	0.227
80	80	0.129
81	81	0.577
82	82	0.0499
83	83	0.0935
84	84	0.766
85	85	0.00805
86	86	0.266
87	87	0.391
88	88	0.939
89	89	0.0899
9	9	0.148
90	90	0.314
91	91	0.16
92	92	0.0407
93	93	0.761
94	94	0.141
95	95	0.0702
96	96	0.0638
97	97	0.784
98	98	0.32
99	99	0.447

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11747

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100197 carcinosarcoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1115 (sarcoma)
154 (mixed cell type cancer)
4236 (carcinosarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100400 (sarcoma cell line sample)
0101120 (epithelial cell line sample)
0100197 (carcinosarcoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004911
+|accession_numbers=CAGE;DRX007844;DRR008716;DRZ000141;DRZ001526;DRZ011491;DRZ012876
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1115,DOID:154,DOID:4236
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100400,FF:0101120,FF:0100197
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:81118647..81118666,+!p1@PRDM8!2.41!336.49!PRDM8;;chr2:182545234..182545252,-!p1@NEUROD1!1.99!96.54!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!1.90!77.61!INSM1;;chr11:31832658..31832681,-!p1@PAX6!1.88!75.01!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.79!119.11!DACH1;;chr1:3569072..3569093,+!p1@TP73!1.61!39.93!TP73;;chr1:2461692..2461710,-!p1@HES5!1.57!35.77!HES5;;chr1:197886461..197886558,+!p1@LHX9!1.53!32.99!LHX9;;chr8:80679993..80680011,-!p1@HEY1!1.51!44.45!HEY1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.43!HOXC5;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.74!PAX6;;chr2:162272785..162272836,+!p1@TBR1!1.43!25.70!TBR1;;chr7:27213893..27213954,-!p1@HOXA10!1.42!25.18!HOXA10;;chr7:27205136..27205164,-!p1@HOXA9!1.42!25.00!HOXA9;;chr4:81105027..81105039,+!p3@PRDM8!1.41!28.47!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!1.39!23.79!NEUROD2;;chr2:162272889..162272915,+!p2@TBR1!1.39!23.61!TBR1;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.09!DACH1;;chr11:31832807..31832823,-!p4@PAX6!1.38!22.92!PAX6;;chr9:16728047..16728061,-!p8@BNC2!1.37!22.40!BNC2;;chr9:126774018..126774055,+!p1@LHX2!1.35!21.18!LHX2;;chr11:31832610..31832639,-!p5@PAX6!1.34!21.01!PAX6;;chr11:31832687..31832704,-!p6@PAX6!1.32!19.79!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.28!46.36!ZFPM2;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.94!MXD3;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.89!EBF1;;chr1:23857325..23857416,-!p2@E2F2!1.25!19.45!E2F2;;chr12:55413751..55413765,+!p1@NEUROD4!1.23!15.97!NEUROD4;;chr11:31832581..31832601,-!p7@PAX6!1.22!15.63!PAX6;;chr17:53342311..53342400,+!p1@HLF!1.21!17.54!HLF;;chr17:46622440..46622477,-!p5@HOXB2!1.21!16.84!HOXB2;;chr6:19837592..19837621,+!p1@ID4!1.20!89.94!ID4;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.93!TBX1;;chr1:40105299..40105326,-!p1@HEYL!1.20!14.76!HEYL;;chr1:935398..935465,-!p2@HES4!1.19!29.86!HES4;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.41!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.06!HOXC9;;chr15:76629123..76629151,+!p1@ISL2!1.16!14.93!ISL2;;chr5:158527104..158527135,-!p4@EBF1!1.16!13.54!EBF1;;chr7:156803329..156803362,-!p1@MNX1!1.16!13.54!MNX1;;chr11:63684602..63684664,-!p1@RCOR2!1.15!25.87!RCOR2;;chr6:10412392..10412409,-!p4@TFAP2A!1.15!15.11!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.14!12.67!POU3F3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.14!12.67!ZBED1;;chr2:166326200..166326216,+!p1@CSRNP3!1.12!17.88!CSRNP3;;chr18:55102628..55102646,+!p2@ONECUT2!1.12!12.33!ONECUT2;;chr19:38720294..38720348,-!p1@DPF1!1.11!14.76!DPF1;;chr20:32274150..32274166,-!p2@E2F1!1.10!21.70!E2F1;;chr1:160336851..160336868,+!p1@NHLH1!1.08!10.94!NHLH1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.08!10.94!RUNX1T1;;chr2:100721881..100721904,-!p6@AFF3!1.07!10.76!AFF3;;chr12:24102576..24102623,-!p2@SOX5!1.07!10.76!SOX5;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.27!E2F2;;chr7:27224795..27224840,-!p2@HOXA11!1.05!10.24!HOXA11;;chr8:53166899..53166914,-!p3@ST18!1.04!9.90!ST18;;chr6:10412600..10412637,-!p1@TFAP2A!1.03!16.32!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!1.03!9.72!HOXA11;;chr13:79177703..79177729,-!p2@POU4F1!1.03!9.72!POU4F1;;chr9:96717629..96717644,-!p1@BARX1!1.03!9.72!BARX1;;chr5:158526459..158526481,-!p2@EBF1!1.02!12.67!EBF1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.38!LHX2;;chr19:50432453..50432468,+!p1@ATF5!1.01!527.82!ATF5;;chr8:106330696..106330719,+!p2@ZFPM2!1.01!11.98!ZFPM2;;chr4:81105091..81105107,+!p9@PRDM8!1.00!9.03!PRDM8;;chr2:239148671..239148686,-!p1@HES6!0.98!31.95!HES6;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.37!PITX1;;chr5:150284532..150284549,-!p1@ZNF300!0.97!17.54!ZNF300;;chr15:37390850..37390909,-!p3@MEIS2!0.97!16.67!MEIS2;;chr3:40547564..40547616,+!p1@ZNF620!0.97!11.81!ZNF620;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.33!RUNX1T1;;chr20:32274179..32274213,-!p1@E2F1!0.96!55.04!E2F1;;chr1:3569101..3569115,+!p2@TP73!0.96!8.16!TP73;;chr9:114287433..114287513,+!p1@ZNF483!0.95!21.01!ZNF483;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.99!RUNX1T1;;chr12:85673977..85674015,+!p1@ALX1!0.95!7.99!ALX1;;chr2:157189180..157189290,-!p1@NR4A2!0.94!42.02!NR4A2;;chr6:20402102..20402152,+!p1@E2F3!0.94!32.64!E2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.93!21.01!TRPS1;;chr19:20188776..20188826,+!p1@ZNF90!0.93!20.66!ZNF90;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.94!NFIB;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.38!BNC2;;chr9:16727978..16728010,-!p6@BNC2!0.93!7.47!BNC2;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.47!TBX15;;chr1:216896752..216896778,-!p1@ESRRG!0.92!7.29!ESRRG;;chr1:3569135..3569150,+!p3@TP73!0.92!7.29!TP73;;chr20:62795799..62795819,+!p1@MYT1!0.92!7.29!MYT1;;chr20:62795834..62795878,+!p2@MYT1!0.92!7.29!MYT1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.92!7.29!MEF2B;;chr14:38064429..38064486,-!p1@FOXA1!0.92!7.29!FOXA1;;chr9:16871214..16871260,-!p11@BNC2!0.92!7.29!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.91!7.12!NKX2-5;;chr2:177001290..177001315,+!p1@HOXD3!0.91!7.12!HOXD3;;chr2:182545296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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10642-109A3
 |is_a=EFO:0002091;;FF:0000210;;FF:0100197
 |is_obsolete=
+|library_id=CNhs11747
+|library_id_phase_based=2:CNhs11747
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10642
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10642
 |name=carcinosarcoma cell line:JHUCS-1
 |namespace=FANTOM5
@@ Line 43: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11747,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=109
 |rna_catalog_number=
@@ Line 58: / Line 77: @@
 |rna_weight_ug=198.87
 |sample_age=56
+|sample_category=cell lines
 |sample_cell_catalog=RCB1547
 |sample_cell_line=JHUCS-1
@@ Line 79: / Line 99: @@
 |top_motifs=TFDP1:2.68285363043;BREu{core}:2.67183040206;NKX2-1,4:2.4511143936;POU1F1:2.32842384761;AHR_ARNT_ARNT2:2.1430088239;TEF:2.08615662281;RBPJ:2.0792583225;E2F1..5:2.00640563271;POU6F1:1.96068056979;PAX4:1.92147560743;NKX6-1,2:1.73815610782;PAX3,7:1.468556054;POU3F1..4:1.4656915574;DBP:1.46184939271;PITX1..3:1.41028300962;NFY{A,B,C}:1.39591075555;NKX2-3_NKX2-5:1.39303520961;YY1:1.37093849353;ZNF143:1.27509860856;FOXM1:1.24730656156;ZNF384:1.23952110213;EVI1:1.23266702446;PBX1:1.20080792948;NRF1:1.19909799902;ALX1:1.17796488353;MTE{core}:1.1672394774;CDX1,2,4:1.14627928694;ARID5B:1.14556161082;PRRX1,2:1.07759025112;TFAP2B:1.06344874119;CDC5L:1.04476703861;RREB1:1.02640719071;ZFP161:1.02528790606;MED-1{core}:1.010024316;NKX3-1:1.00481834433;AIRE:0.96878645707;CUX2:0.967210934935;PATZ1:0.966048055653;GFI1:0.958135858569;TOPORS:0.950858715773;FOXP1:0.902073250524;POU5F1:0.885075656413;MZF1:0.877556764756;GATA4:0.863230295524;PAX8:0.859756130273;HOX{A4,D4}:0.854232997824;STAT1,3:0.817828510961;CRX:0.777344955227;ZBTB16:0.770786441105;ATF4:0.76872960717;PDX1:0.764317105438;ZBTB6:0.749073679144;NR1H4:0.748199800266;ELK1,4_GABP{A,B1}:0.744190998004;IKZF2:0.736317869477;RFX1:0.721779383918;FOXD3:0.709529257344;ONECUT1,2:0.701803678463;MYB:0.673538446892;ZIC1..3:0.603250294888;FOXP3:0.588611359212;PRDM1:0.576940030369;KLF4:0.574649373104;REST:0.572187364406;UFEwm:0.52867836745;ESRRA:0.522071692449;TAL1_TCF{3,4,12}:0.489610912466;PAX5:0.434462343072;GTF2I:0.419442609511;LHX3,4:0.415408753418;NFE2L1:0.412228353696;LEF1_TCF7_TCF7L1,2:0.406183283921;SOX{8,9,10}:0.399457101636;HOXA9_MEIS1:0.377498526615;XCPE1{core}:0.375888084324;RFX2..5_RFXANK_RFXAP:0.37558813429;MAZ:0.360423233077;SOX17:0.343554928123;OCT4_SOX2{dimer}:0.320145768409;FOXA2:0.311615981736;HIC1:0.311244397757;ATF5_CREB3:0.309247124352;EGR1..3:0.264836372328;MYFfamily:0.230202498436;NKX3-2:0.21060965;MTF1:0.185474895037;HOX{A6,A7,B6,B7}:0.181026612532;HMGA1,2:0.178005403733;GZF1:0.170285944575;PAX1,9:0.158876215684;CREB1:0.142120259107;HOX{A5,B5}:0.137889684188;BPTF:0.121557544351;SP1:0.117917986594;HAND1,2:0.104933643988;PAX6:0.0819093583911;TGIF1:0.0664311707919;NANOG:0.0434935444909;SREBF1,2:0.0218004199312;GCM1,2:0.00620277836421;NR3C1:-0.00346670830734;PPARG:-0.00989205351553;ADNP_IRX_SIX_ZHX:-0.0212532612267;ZNF423:-0.0280501835423;NFIX:-0.0331792180181;NKX2-2,8:-0.0527018155366;GFI1B:-0.0642477434658;NR6A1:-0.0950894659112;HBP1_HMGB_SSRP1_UBTF:-0.0986565548018;HIF1A:-0.112153047587;SOX2:-0.153535235818;HSF1,2:-0.169129054521;HNF1A:-0.201737265528;FOXN1:-0.203431538583;IKZF1:-0.203438675667;SOX5:-0.213370495536;FOXL1:-0.226893637801;XBP1:-0.241524262031;MYBL2:-0.247250314779;HLF:-0.260545448872;EN1,2:-0.261099435975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.264096857558;VSX1,2:-0.268009226872;SNAI1..3:-0.271951057154;ATF2:-0.275539561668;LMO2:-0.309737549885;RORA:-0.329623165236;RXR{A,B,G}:-0.336374138941;STAT5{A,B}:-0.341351196692;CEBPA,B_DDIT3:-0.36862612829;NHLH1,2:-0.376024305682;NFIL3:-0.383928196578;GTF2A1,2:-0.396885977613;ALX4:-0.411076674068;MEF2{A,B,C,D}:-0.421823041544;FOXQ1:-0.429956486167;NANOG{mouse}:-0.4315108919;ZEB1:-0.433650687246;DMAP1_NCOR{1,2}_SMARC:-0.439683370269;GATA6:-0.442590789484;HNF4A_NR2F1,2:-0.474797183945;MYOD1:-0.47659296718;FOSL2:-0.488326129099;JUN:-0.523517776348;FOX{I1,J2}:-0.527884523015;MAFB:-0.571682424711;NFKB1_REL_RELA:-0.581541416043;ATF6:-0.593122604958;SPI1:-0.597648405962;NR5A1,2:-0.599007660391;bHLH_family:-0.604750680671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.621007188636;AR:-0.6230625423;IRF7:-0.628809923876;POU2F1..3:-0.647997364975;IRF1,2:-0.654518984162;FOX{F1,F2,J1}:-0.65667970249;SPIB:-0.697463258238;TEAD1:-0.704662718696;SRF:-0.708022787033;FOS_FOS{B,L1}_JUN{B,D}:-0.725334843798;T:-0.741769616361;RUNX1..3:-0.748032736821;TLX1..3_NFIC{dimer}:-0.787872356219;SMAD1..7,9:-0.795586479042;BACH2:-0.795882782292;TP53:-0.83053265376;ZNF238:-0.854995420348;ELF1,2,4:-0.876237461081;NFE2L2:-0.887732593159;FOX{D1,D2}:-0.888399700454;TFAP2{A,C}:-0.899771141253;RXRA_VDR{dimer}:-0.911367019938;NFATC1..3:-0.949141635333;ESR1:-0.954872627661;NFE2:-0.980203775964;FOXO1,3,4:-0.994353669706;TFAP4:-0.994702458808;TBP:-1.01347696183;TLX2:-1.09847202954;ZNF148:-1.18726990348;ETS1,2:-1.21520282952;STAT2,4,6:-1.22043351943;TFCP2:-1.24399411548;PAX2:-1.26073046047;GLI1..3:-1.30232731491;HES1:-1.35286602091;EP300:-1.40981152803;HMX1:-1.48541983794;TBX4,5:-1.5194940659;EBF1:-1.6140482545;SPZ1:-2.00220964163
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10642-109A3;search_select_hide=table117:FF:10642-109A3
 }}

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FF:10642-109A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0