FF:11512-119G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005960 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005960 | ||
|accession_numbers=CAGE;DRX008478;DRR009350;DRZ000775;DRZ002160;DRZ012125;DRZ013510 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037040;DRR041406;DRZ007048 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000167,FF:0000004,FF:0000179 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!325.50!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.85!69.86!HOXB5;;chr2:19558373..19558392,-!p1@OSR1!1.64!111.83!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.59!37.62!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.06!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.33!TBX2;;chr17:46675420..46675465,-!p3@HOXB6!1.48!33.52!HOXB6;;chr16:86544113..86544145,+!p1@FOXF1!1.47!34.80!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.46!137.67!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.32!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.41!717.54!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.33!54.25!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.32!73.70!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.32!34.55!DRAP1;;chr17:46675539..46675551,-!p7@HOXB6!1.32!19.96!HOXB6;;chr17:59477275..59477286,+!p3@TBX2!1.25!22.26!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.21!68.58!DRAP1;;chr17:59477197..59477212,+!p2@TBX2!1.21!25.85!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!1.21!22.77!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.17!20.47!NFIX;;chr17:46622070..46622109,-!p1@HOXB2!1.16!29.68!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.91!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.43!TWIST2;;chr17:59529743..59529798,+!p1@TBX4!1.12!12.28!TBX4;;chr11:65686732..65686756,+!p2@DRAP1!1.11!49.90!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!1.08!49.90!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.08!18.94!TWIST2;;chr17:46675469..46675481,-!p4@HOXB6!1.08!11.00!HOXB6;;chr5:72744594..72744609,-!p1@FOXD1!1.07!49.39!FOXD1;;chr17:46675586..46675600,-!p6@HOXB6!1.05!10.24!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!1.04!262.81!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!1.01!1055.58!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!84.45!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.70!TBX5;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.59!FOXD1;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.49!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.11!TOX2;;chr6:34205372..34205412,+!p5@HMGA1!0.94!40.18!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.24!PRRX2;;chr12:115122318..115122331,-!p2@TBX3!0.94!7.68!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.08!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.92!9.98!DRAP1;;chr17:46621101..46621143,-!p7@HOXB2!0.91!9.72!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.91!7.17!HOXB5;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.20!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.89!FOSL1;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.45!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.90!11.00!PITX1;;chr2:5832508..5832524,+!p1@SOX11!0.90!6.91!SOX11;;chr16:86612320..86612394,+!p1@FOXL1!0.90!6.91!FOXL1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!18.94!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!0.88!17.15!FOXC2;;chr17:46667594..46667619,-!p1@HOXB3!0.88!6.65!HOXB3;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.65!HOXA7;;chr8:128748308..128748324,+!p2@MYC!0.87!188.08!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.73!SNAI2;;chr17:46667628..46667642,-!p2@HOXB3!0.87!6.40!HOXB3;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.40!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.82!C11orf9;;chr11:47279248..47279264,+!p3@NR1H3!0.86!7.17!NR1H3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!16.12!TWIST1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.47!HOXB2;;chr11:65686952..65686975,+!p5@DRAP1!0.84!35.06!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.89!HMGA2;;chr11:46299186..46299195,+!p3@CREB3L1!0.82!6.40!CREB3L1;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.63!CREB3L1;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.63!FOXC2;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.63!SIM2;;chr9:132427883..132427951,+!p2@PRRX2!0.82!5.63!PRRX2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.19!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.80!7.17!BCL3;;chr15:96876966..96877017,+!p12@NR2F2!0.79!7.68!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.12!ZNF668;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.12!HOXB2;;chr14:29235961..29236008,+!p1@FOXG1!0.77!4.86!FOXG1;;chr11:47279504..47279563,+!p1@NR1H3!0.76!11.52!NR1H3;;chr15:96874012..96874042,+!p2@NR2F2!0.75!45.55!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.31!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.75!12.03!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.75!6.91!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr4:174450089..174450153,-!p2@HAND2!0.75!4.61!HAND2;;chr12:54447599..54447630,+!p3@HOXC4!0.74!5.63!HOXC4;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.13!NFIX;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.35!HOXB4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.35!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.43!TBX3;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.91!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.12!DRAP1;;chr17:46671154..46671167,-!p4@HOXB5!0.71!4.09!HOXB5;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.63!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.69!27.89!HIC1;;chr1:8483878..8483907,-!p4@RERE!0.68!16.63!RERE;;chr7:27183291..27183324,-!p1@HOXA5!0.68!3.84!HOXA5;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.40!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.66!21.75!RARG;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.84!GLIS1;;chr3:150126759..150126784,+!p2@TSC22D2!0.65!18.42!TSC22D2;;chr2:46524537..46524553,+!p1@EPAS1!0.64!393.06!EPAS1;;chr11:65686855..65686946,+!p1@DRAP1!0.64!300.94!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.23!HMGA1;;chr18:19749386..19749404,+!p2@GATA6!0.64!5.12!GATA6;;chr17:46675619..46675642,-!p5@HOXB6!0.64!3.33!HOXB6;;chr11:65668011..65668020,-!p3@FOSL1!0.64!3.33!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.64!3.33!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!279.70!TAX1BP3;;chr19:3366570..3366619,+!p1@NFIC!0.63!123.34!NFIC;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.15!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.63!6.91!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.63!6.40!ZFP106;;chr3:141105705..141105770,+!p4@ZBTB38!0.63!4.09!ZBTB38;;chr20:39946361..39946379,-!p2@ZHX3!0.62!10.75!ZHX3;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.68!SMARCD3;;chr5:72743793..72743855,-!p4@FOXD1!0.62!3.84!FOXD1;;chr8:49833978..49833996,-!p1@SNAI2!0.61!76.26!SNAI2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.61!41.20!TAX1BP3;;chrX:48900782..48900793,-!p3@TFE3!0.61!6.40!TFE3;;chr17:46675344..46675355,-!p9@HOXB6!0.61!3.07!HOXB6;;chr17:59477266..59477273,+!p6@TBX2!0.61!3.07!TBX2;;chr12:54447637..54447659,+!p4@HOXC4!0.61!3.07!HOXC4;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.07!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.61!3.07!CUX1;;chr2:19558327..19558334,-!p2@OSR1!0.61!3.07!OSR1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.19!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.59!242.85!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.59!46.57!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.89!NR2F2;;chr19:38720294..38720348,-!p1@DPF1!0.59!3.84!DPF1;;chr1:170632285..170632309,+!p1@PRRX1!0.59!3.33!PRRX1;;chr19:3359591..3359667,+!p2@NFIC!0.58!39.41!NFIC;;chr20:42295713..42295738,+!p2@MYBL2!0.58!19.96!MYBL2;;chr1:221052700..221052730,+!p5@HLX!0.58!4.61!HLX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.81!ARNT2;;chr2:96012397..96012417,+!p3@KCNIP3!0.58!2.81!KCNIP3;;chr4:57522598..57522664,-!p3@HOPX!0.58!2.81!HOPX;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.81!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.58!2.81!IRX2;;chr20:42295745..42295765,+!p1@MYBL2!0.57!55.02!MYBL2;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.52!CREB5;;chr14:21994337..21994442,-!p1@SALL2!0.57!8.70!SALL2;;chr12:66218183..66218209,+!p4@HMGA2!0.57!5.89!HMGA2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr5:92918956..92918969,+!p4@NR2F1!0.57!3.07!NR2F1;;chr20:306489..306564,+!p1@SOX12!0.56!35.83!SOX12;;chr19:18392250..18392260,-!p4@JUND!0.56!9.98!JUND;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.58!HMGA2;;chr12:115122005..115122016,-!p3@TBX3!0.56!3.33!TBX3;;chr15:96873861..96873872,+!p9@NR2F2!0.55!6.14!NR2F2;;chr16:8962202..8962222,-!p3@CARHSP1!0.55!5.12!CARHSP1;;chr9:16870659..16870675,-!p2@BNC2!0.55!3.33!BNC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.55!2.56!PKNOX2;;chr12:115122262..115122271,-!p7@TBX3!0.55!2.56!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.55!2.56!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.55!2.56!PITX1;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.56!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.55!2.56!ETV4;;chr15:96873921..96873946,+!p1@NR2F2!0.54!88.54!NR2F2;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.01!PCBP4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.54!31.22!GLIS2;;chr19:49865646..49865718,-!p1@TEAD2!0.54!26.61!TEAD2;;chr21:47063625..47063658,+!p1@PCBP3!0.54!13.31!PCBP3;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.77!PPARD;;chr17:61919985..61920012,-!p3@SMARCD2!0.54!7.17!SMARCD2;;chr20:50721803..50721857,-!p2@ZFP64!0.54!4.35!ZFP64;;chr2:28616337..28616355,+!p2@FOSL2!0.53!53.99!FOSL2;;chr16:4322832..4322907,-!p1@TFAP4!0.53!22.77!TFAP4;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.42!SREBF1;;chr19:49864746..49864780,-!p2@TEAD2!0.53!3.58!TEAD2;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.38!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.52!11.77!STAT6;;chr14:73360799..73360817,-!p1@DPF3!0.52!9.98!DPF3;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.30!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.30!FOXG1;;chr19:46800289..46800327,+!p2@HIF3A!0.52!2.30!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.52!2.30!HOXA2;;chr7:27169801..27169844,-!p2@HOXA4!0.52!2.30!HOXA4;;chr6:31126291..31126399,+!p1@TCF19!0.51!27.64!TCF19;;chr11:113930291..113930339,+!p2@ZBTB16!0.51!4.09!ZBTB16;;chr16:8962853..8962878,-!p1@CARHSP1!0.50!168.12!CARHSP1;;chr6:35464817..35464894,-!p1@TEAD3!0.50!44.01!TEAD3;;chr18:19749541..19749557,+!p1@GATA6!0.50!8.44!GATA6;;chr17:7492684..7492778,-!p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EIS1;;chr1:43148029..43148040,+!p7@YBX1!0.16!0.77!YBX1;;chr1:6684918..6684936,+!p2@THAP3!0.16!0.77!THAP3;;chr12:80083807..80083859,-!p11@PAWR!0.16!0.77!PAWR;;chr14:105927191..105927216,+!p6@MTA1!0.16!0.77!MTA1;;chr19:56154958..56155027,+!p1@ZNF581!0.15!42.22!ZNF581;;chr2:70314579..70314590,+!p2@PCBP1!0.15!19.45!PCBP1;;chr20:39946279..39946356,-!p1@ZHX3!0.15!19.19!ZHX3;;chr12:96588143..96588185,+!p1@ELK3!0.15!15.10!ELK3;;chr12:8185288..8185339,+!p1@FOXJ2!0.15!12.28!FOXJ2;;chr12:125052112..125052172,-!p2@NCOR2!0.15!11.00!NCOR2;;chr10:104154246..104154347,+!p3@NFKB2!0.15!7.17!NFKB2;;chr19:50169013..50169062,-!p2@IRF3!0.15!6.65!IRF3;;chr17:38498402..38498445,+!p3@RARA!0.15!3.84!RARA;;chr19:56632858..56632903,-!p2@ZNF787!0.15!2.30!ZNF787;;chrX:129244885..129244926,-!p3@ELF4!0.15!2.30!ELF4;;chr19:15560730..15560772,-!p3@WIZ!0.15!1.79!WIZ;;chr2:70314240..70314256,+!p4@PCBP1!0.15!1.79!PCBP1;;chr15:37391271..37391376,-!p5@MEIS2!0.15!1.54!MEIS2;;chr1:151032922..151032951,+!p2@MLLT11!0.15!1.28!MLLT11;;chr7:137564372..137564394,-!p7@CREB3L2!0.15!1.28!CREB3L2;;chr2:121493492..121493537,+!p2@GLI2!0.15!1.28!GLI2;;chr2:85981222..85981259,+!p2@ATOH8!0.15!1.28!ATOH8;;chr14:64970401..64970423,-!p7@ZBTB25!0.15!1.28!ZBTB25;;chr19:58400344..58400364,-!p2@ZNF814!0.15!1.02!ZNF814;;chr20:48807648..48807671,+!p9@CEBPB!0.15!1.02!CEBPB;;chr2:178128552..178128574,-!p7@NFE2L2!0.15!1.02!NFE2L2;;chr5:43067583..43067606,+!p7@ZNF131!0.15!1.02!ZNF131;;chr8:72756267..72756296,-!p4@MSC!0.15!1.02!MSC;;chr6:42419290..42419314,-!p5@TRERF1!0.15!0.77!TRERF1;;chr6:45390077..45390105,+!p9@RUNX2!0.15!0.77!RUNX2;;chr9:117150303..117150312,-!p3@AKNA!0.15!0.77!AKNA;;chr11:62369806..62369837,-!p8@MTA2!0.15!0.77!MTA2;;chr22:30162893..30162907,-!p2@ZMAT5!0.15!0.77!ZMAT5;;chr22:30163056..30163067,-!p3@ZMAT5!0.15!0.77!ZMAT5;;chr3:141087144..141087170,+!p11@ZBTB38!0.15!0.77!ZBTB38;;chr1:8484007..8484061,-!p13@RERE!0.15!0.77!RERE;;chr7:100076744..100076749,-!p8@TSC22D4!0.15!0.51!TSC22D4;;chr1:149858461..149858479,+!p1@BOLA1!0.14!495.16!BOLA1;;chr16:89939979..89940011,+!p2@TCF25!0.14!47.60!TCF25;;chr3:187463248..187463264,-!p1@BCL6!0.14!26.36!BCL6;;chr16:29817665..29817719,+!p3@MAZ!0.14!18.17!MAZ;;chr12:122516646..122516668,+!p1@MLXIP!0.14!16.38!MLXIP;;chr20:50808290..50808328,-!p1@ZFP64!0.14!13.82!ZFP64;;chr12:54020107..54020196,-!p1@ATF7!0.14!11.52!ATF7;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.14!7.17!SNAPC4;;chr11:62368696..62368759,-!p4@MTA2!0.14!6.91!MTA2;;chr9:14314131..14314147,-!p2@NFIB!0.14!6.14!NFIB;;chr16:30583017..30583064,-!p1@ZNF688!0.14!5.63!ZNF688;;chr22:50247449..50247515,+!p1@ZBED4!0.14!4.86!ZBED4;;chr1:27022839..27022890,+!p3@ARID1A!0.14!2.81!ARID1A;;chr1:59249645..59249656,-!p4@JUN!0.14!2.30!JUN;;chr8:48650982..48651023,-!p3@CEBPD!0.14!2.30!CEBPD;;chr11:64073006..64073017,+!p3@ESRRA!0.14!2.05!ESRRA;;chr12:10875658..10875708,-!p2@CSDA!0.14!2.05!CSDA;;chr19:8578683..8578750,-!p2@ZNF414!0.14!1.79!ZNF414;;chr1:33721873..33721898,+!p3@ZNF362!0.14!1.54!ZNF362;;chr20:62462566..62462631,-!p1@ZBTB46!0.14!1.54!ZBTB46;;chr17:7382834..7382855,-!p6@ZBTB4!0.14!1.28!ZBTB4;;chr19:3572908..3572917,+!p3@HMG20B!0.14!1.28!HMG20B;;chr19:18391708..18391737,-!p7@JUND!0.14!1.02!JUND;;chr19:4066763..4066779,-!p5@ZBTB7A!0.14!1.02!ZBTB7A;;chr1:164528911..164528940,+!p7@PBX1!0.14!1.02!PBX1;;chr11:6947720..6947812,+!p1@ZNF215!0.14!0.77!ZNF215;;chr14:24025106..24025172,-!p2@ZFHX2!0.14!0.77!ZFHX2;; | |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!325.50!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.85!69.86!HOXB5;;chr2:19558373..19558392,-!p1@OSR1!1.64!111.83!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.59!37.62!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.06!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.33!TBX2;;chr17:46675420..46675465,-!p3@HOXB6!1.48!33.52!HOXB6;;chr16:86544113..86544145,+!p1@FOXF1!1.47!34.80!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.46!137.67!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.32!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.41!717.54!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.33!54.25!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.32!73.70!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.32!34.55!DRAP1;;chr17:46675539..46675551,-!p7@HOXB6!1.32!19.96!HOXB6;;chr17:59477275..59477286,+!p3@TBX2!1.25!22.26!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.21!68.58!DRAP1;;chr17:59477197..59477212,+!p2@TBX2!1.21!25.85!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!1.21!22.77!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.17!20.47!NFIX;;chr17:46622070..46622109,-!p1@HOXB2!1.16!29.68!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.91!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.43!TWIST2;;chr17:59529743..59529798,+!p1@TBX4!1.12!12.28!TBX4;;chr11:65686732..65686756,+!p2@DRAP1!1.11!49.90!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!1.08!49.90!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.08!18.94!TWIST2;;chr17:46675469..46675481,-!p4@HOXB6!1.08!11.00!HOXB6;;chr5:72744594..72744609,-!p1@FOXD1!1.07!49.39!FOXD1;;chr17:46675586..46675600,-!p6@HOXB6!1.05!10.24!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!1.04!262.81!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!1.01!1055.58!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!84.45!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.70!TBX5;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.59!FOXD1;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.49!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.11!TOX2;;chr6:34205372..34205412,+!p5@HMGA1!0.94!40.18!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.24!PRRX2;;chr12:115122318..115122331,-!p2@TBX3!0.94!7.68!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.08!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.92!9.98!DRAP1;;chr17:46621101..46621143,-!p7@HOXB2!0.91!9.72!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.91!7.17!HOXB5;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.20!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.89!FOSL1;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.45!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.90!11.00!PITX1;;chr2:5832508..5832524,+!p1@SOX11!0.90!6.91!SOX11;;chr16:86612320..86612394,+!p1@FOXL1!0.90!6.91!FOXL1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!18.94!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!0.88!17.15!FOXC2;;chr17:46667594..46667619,-!p1@HOXB3!0.88!6.65!HOXB3;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.65!HOXA7;;chr8:128748308..128748324,+!p2@MYC!0.87!188.08!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.73!SNAI2;;chr17:46667628..46667642,-!p2@HOXB3!0.87!6.40!HOXB3;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.40!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.82!C11orf9;;chr11:47279248..47279264,+!p3@NR1H3!0.86!7.17!NR1H3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!16.12!TWIST1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.47!HOXB2;;chr11:65686952..65686975,+!p5@DRAP1!0.84!35.06!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.89!HMGA2;;chr11:46299186..46299195,+!p3@CREB3L1!0.82!6.40!CREB3L1;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.63!CREB3L1;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.63!FOXC2;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.63!SIM2;;chr9:132427883..132427951,+!p2@PRRX2!0.82!5.63!PRRX2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.19!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.80!7.17!BCL3;;chr15:96876966..96877017,+!p12@NR2F2!0.79!7.68!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.12!ZNF668;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.12!HOXB2;;chr14:29235961..29236008,+!p1@FOXG1!0.77!4.86!FOXG1;;chr11:47279504..47279563,+!p1@NR1H3!0.76!11.52!NR1H3;;chr15:96874012..96874042,+!p2@NR2F2!0.75!45.55!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.31!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.75!12.03!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.75!6.91!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr4:174450089..174450153,-!p2@HAND2!0.75!4.61!HAND2;;chr12:54447599..54447630,+!p3@HOXC4!0.74!5.63!HOXC4;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.13!NFIX;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.35!HOXB4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.35!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.43!TBX3;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.91!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.12!DRAP1;;chr17:46671154..46671167,-!p4@HOXB5!0.71!4.09!HOXB5;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.63!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.69!27.89!HIC1;;chr1:8483878..8483907,-!p4@RERE!0.68!16.63!RERE;;chr7:27183291..27183324,-!p1@HOXA5!0.68!3.84!HOXA5;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.40!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.66!21.75!RARG;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.84!GLIS1;;chr3:150126759..150126784,+!p2@TSC22D2!0.65!18.42!TSC22D2;;chr2:46524537..46524553,+!p1@EPAS1!0.64!393.06!EPAS1;;chr11:65686855..65686946,+!p1@DRAP1!0.64!300.94!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.23!HMGA1;;chr18:19749386..19749404,+!p2@GATA6!0.64!5.12!GATA6;;chr17:46675619..46675642,-!p5@HOXB6!0.64!3.33!HOXB6;;chr11:65668011..65668020,-!p3@FOSL1!0.64!3.33!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.64!3.33!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!279.70!TAX1BP3;;chr19:3366570..3366619,+!p1@NFIC!0.63!123.34!NFIC;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.15!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.63!6.91!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.63!6.40!ZFP106;;chr3:141105705..141105770,+!p4@ZBTB38!0.63!4.09!ZBTB38;;chr20:39946361..39946379,-!p2@ZHX3!0.62!10.75!ZHX3;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.68!SMARCD3;;chr5:72743793..72743855,-!p4@FOXD1!0.62!3.84!FOXD1;;chr8:49833978..49833996,-!p1@SNAI2!0.61!76.26!SNAI2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.61!41.20!TAX1BP3;;chrX:48900782..48900793,-!p3@TFE3!0.61!6.40!TFE3;;chr17:46675344..46675355,-!p9@HOXB6!0.61!3.07!HOXB6;;chr17:59477266..59477273,+!p6@TBX2!0.61!3.07!TBX2;;chr12:54447637..54447659,+!p4@HOXC4!0.61!3.07!HOXC4;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.07!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.61!3.07!CUX1;;chr2:19558327..19558334,-!p2@OSR1!0.61!3.07!OSR1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.19!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.59!242.85!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.59!46.57!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.89!NR2F2;;chr19:38720294..38720348,-!p1@DPF1!0.59!3.84!DPF1;;chr1:170632285..170632309,+!p1@PRRX1!0.59!3.33!PRRX1;;chr19:3359591..3359667,+!p2@NFIC!0.58!39.41!NFIC;;chr20:42295713..42295738,+!p2@MYBL2!0.58!19.96!MYBL2;;chr1:221052700..221052730,+!p5@HLX!0.58!4.61!HLX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.81!ARNT2;;chr2:96012397..96012417,+!p3@KCNIP3!0.58!2.81!KCNIP3;;chr4:57522598..57522664,-!p3@HOPX!0.58!2.81!HOPX;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.81!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.58!2.81!IRX2;;chr20:42295745..42295765,+!p1@MYBL2!0.57!55.02!MYBL2;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.52!CREB5;;chr14:21994337..21994442,-!p1@SALL2!0.57!8.70!SALL2;;chr12:66218183..66218209,+!p4@HMGA2!0.57!5.89!HMGA2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr5:92918956..92918969,+!p4@NR2F1!0.57!3.07!NR2F1;;chr20:306489..306564,+!p1@SOX12!0.56!35.83!SOX12;;chr19:18392250..18392260,-!p4@JUND!0.56!9.98!JUND;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.58!HMGA2;;chr12:115122005..115122016,-!p3@TBX3!0.56!3.33!TBX3;;chr15:96873861..96873872,+!p9@NR2F2!0.55!6.14!NR2F2;;chr16:8962202..8962222,-!p3@CARHSP1!0.55!5.12!CARHSP1;;chr9:16870659..16870675,-!p2@BNC2!0.55!3.33!BNC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.55!2.56!PKNOX2;;chr12:115122262..115122271,-!p7@TBX3!0.55!2.56!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.55!2.56!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.55!2.56!PITX1;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.56!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.55!2.56!ETV4;;chr15:96873921..96873946,+!p1@NR2F2!0.54!88.54!NR2F2;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.01!PCBP4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.54!31.22!GLIS2;;chr19:49865646..49865718,-!p1@TEAD2!0.54!26.61!TEAD2;;chr21:47063625..47063658,+!p1@PCBP3!0.54!13.31!PCBP3;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.77!PPARD;;chr17:61919985..61920012,-!p3@SMARCD2!0.54!7.17!SMARCD2;;chr20:50721803..50721857,-!p2@ZFP64!0.54!4.35!ZFP64;;chr2:28616337..28616355,+!p2@FOSL2!0.53!53.99!FOSL2;;chr16:4322832..4322907,-!p1@TFAP4!0.53!22.77!TFAP4;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.42!SREBF1;;chr19:49864746..49864780,-!p2@TEAD2!0.53!3.58!TEAD2;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.38!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.52!11.77!STAT6;;chr14:73360799..73360817,-!p1@DPF3!0.52!9.98!DPF3;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.30!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.30!FOXG1;;chr19:46800289..46800327,+!p2@HIF3A!0.52!2.30!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.52!2.30!HOXA2;;chr7:27169801..27169844,-!p2@HOXA4!0.52!2.30!HOXA4;;chr6:31126291..31126399,+!p1@TCF19!0.51!27.64!TCF19;;chr11:113930291..113930339,+!p2@ZBTB16!0.51!4.09!ZBTB16;;chr16:8962853..8962878,-!p1@CARHSP1!0.50!168.12!CARHSP1;;chr6:35464817..35464894,-!p1@TEAD3!0.50!44.01!TEAD3;;chr18:19749541..19749557,+!p1@GATA6!0.50!8.44!GATA6;;chr17:7492684..7492778,-!p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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11512-119G9 | |id=FF:11512-119G9 | ||
|is_a=EFO:0002091;;FF:0000179;;FF:0000998 | |is_a=EFO:0002091;;FF:0000179;;FF:0000998 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11328 | |||
|library_id_phase_based=2:CNhs11328 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11512 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TAGCTT.11512 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11512 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TAGCTT.11512 | |||
|name=Smooth Muscle Cells - Bronchial, donor1 | |name=Smooth Muscle Cells - Bronchial, donor1 | ||
|namespace= | |namespace= | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11328,LSID768,release014,COMPLETED | |profile_hcage=CNhs11328,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0191750419381125,0,-0.0978690601690154,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.0989542966657617,0,-0.0543687136826659,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.164967091391252,0,0,0,0,0,0,0,0,0.0252621272200465,0,0,0,0.179493072024499,0,0.0514809683766065,0.179493072024499,-0.0969923612426051,0,0,0.00161066945266475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0227356487764474,0,0,0.0128133068765504,0,0,0,0,0,0,0,-0.00184214846619235,0.142347611844829,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105648514076676,0,0,0,0,0.0669199870007253,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3405 | |rna_catalog_number=SC3405 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=119G9 | |rna_tube_id=119G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171 | |top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11512-119G9;search_select_hide=table117:FF:11512-119G9 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Bronchial, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11328 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11328
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11328
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.67 |
| 10 | 10 | 0.791 |
| 100 | 100 | 0.644 |
| 101 | 101 | 0.753 |
| 102 | 102 | 0.895 |
| 103 | 103 | 0.404 |
| 104 | 104 | 0.292 |
| 105 | 105 | 0.124 |
| 106 | 106 | 0.0407 |
| 107 | 107 | 0.0261 |
| 108 | 108 | 0.359 |
| 109 | 109 | 0.068 |
| 11 | 11 | 0.046 |
| 110 | 110 | 0.111 |
| 111 | 111 | 0.764 |
| 112 | 112 | 0.672 |
| 113 | 113 | 0.466 |
| 114 | 114 | 0.626 |
| 115 | 115 | 0.4 |
| 116 | 116 | 0.0815 |
| 117 | 117 | 0.9 |
| 118 | 118 | 0.684 |
| 119 | 119 | 0.473 |
| 12 | 12 | 0.343 |
| 120 | 120 | 0.336 |
| 121 | 121 | 0.441 |
| 122 | 122 | 0.616 |
| 123 | 123 | 0.0593 |
| 124 | 124 | 0.222 |
| 125 | 125 | 0.366 |
| 126 | 126 | 0.497 |
| 127 | 127 | 0.384 |
| 128 | 128 | 0.0389 |
| 129 | 129 | 0.242 |
| 13 | 13 | 0.398 |
| 130 | 130 | 0.149 |
| 131 | 131 | 0.789 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.864 |
| 134 | 134 | 0.212 |
| 135 | 135 | 0.173 |
| 136 | 136 | 0.509 |
| 137 | 137 | 0.146 |
| 138 | 138 | 0.344 |
| 139 | 139 | 0.409 |
| 14 | 14 | 0.953 |
| 140 | 140 | 0.512 |
| 141 | 141 | 0.408 |
| 142 | 142 | 0.781 |
| 143 | 143 | 0.0421 |
| 144 | 144 | 0.98 |
| 145 | 145 | 0.151 |
| 146 | 146 | 0.239 |
| 147 | 147 | 0.386 |
| 148 | 148 | 0.932 |
| 149 | 149 | 0.036 |
| 15 | 15 | 0.901 |
| 150 | 150 | 0.257 |
| 151 | 151 | 0.478 |
| 152 | 152 | 0.176 |
| 153 | 153 | 0.402 |
| 154 | 154 | 0.343 |
| 155 | 155 | 0.4 |
| 156 | 156 | 0.631 |
| 157 | 157 | 0.0742 |
| 158 | 158 | 0.151 |
| 159 | 159 | 0.713 |
| 16 | 16 | 0.103 |
| 160 | 160 | 0.0154 |
| 161 | 161 | 0.592 |
| 162 | 162 | 0.202 |
| 163 | 163 | 0.706 |
| 164 | 164 | 0.778 |
| 165 | 165 | 0.237 |
| 166 | 166 | 0.836 |
| 167 | 167 | 0.268 |
| 168 | 168 | 0.839 |
| 169 | 169 | 0.0644 |
| 17 | 17 | 0.135 |
| 18 | 18 | 0.103 |
| 19 | 19 | 0.0537 |
| 2 | 2 | 0.23 |
| 20 | 20 | 0.477 |
| 21 | 21 | 0.464 |
| 22 | 22 | 0.0774 |
| 23 | 23 | 0.157 |
| 24 | 24 | 0.264 |
| 25 | 25 | 0.865 |
| 26 | 26 | 0.0244 |
| 27 | 27 | 0.228 |
| 28 | 28 | 0.303 |
| 29 | 29 | 0.973 |
| 3 | 3 | 0.441 |
| 30 | 30 | 0.166 |
| 31 | 31 | 0.261 |
| 32 | 32 | 1.18824e-5 |
| 33 | 33 | 0.359 |
| 34 | 34 | 0.139 |
| 35 | 35 | 0.968 |
| 36 | 36 | 0.881 |
| 37 | 37 | 0.27 |
| 38 | 38 | 0.386 |
| 39 | 39 | 0.222 |
| 4 | 4 | 0.314 |
| 40 | 40 | 0.0273 |
| 41 | 41 | 0.513 |
| 42 | 42 | 0.639 |
| 43 | 43 | 0.194 |
| 44 | 44 | 0.739 |
| 45 | 45 | 0.321 |
| 46 | 46 | 0.0896 |
| 47 | 47 | 0.32 |
| 48 | 48 | 0.24 |
| 49 | 49 | 0.178 |
| 5 | 5 | 0.924 |
| 50 | 50 | 0.394 |
| 51 | 51 | 0.284 |
| 52 | 52 | 0.365 |
| 53 | 53 | 0.822 |
| 54 | 54 | 0.251 |
| 55 | 55 | 0.533 |
| 56 | 56 | 0.231 |
| 57 | 57 | 0.231 |
| 58 | 58 | 0.799 |
| 59 | 59 | 0.0286 |
| 6 | 6 | 0.644 |
| 60 | 60 | 0.272 |
| 61 | 61 | 0.644 |
| 62 | 62 | 0.944 |
| 63 | 63 | 0.188 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.033 |
| 66 | 66 | 0.307 |
| 67 | 67 | 0.758 |
| 68 | 68 | 0.109 |
| 69 | 69 | 0.0352 |
| 7 | 7 | 0.748 |
| 70 | 70 | 0.099 |
| 71 | 71 | 0.127 |
| 72 | 72 | 0.858 |
| 73 | 73 | 0.103 |
| 74 | 74 | 0.92 |
| 75 | 75 | 0.795 |
| 76 | 76 | 0.49 |
| 77 | 77 | 0.0241 |
| 78 | 78 | 0.971 |
| 79 | 79 | 0.438 |
| 8 | 8 | 0.0451 |
| 80 | 80 | 0.643 |
| 81 | 81 | 0.521 |
| 82 | 82 | 0.452 |
| 83 | 83 | 0.89 |
| 84 | 84 | 0.501 |
| 85 | 85 | 0.159 |
| 86 | 86 | 0.875 |
| 87 | 87 | 0.442 |
| 88 | 88 | 0.223 |
| 89 | 89 | 0.202 |
| 9 | 9 | 0.183 |
| 90 | 90 | 0.0306 |
| 91 | 91 | 0.25 |
| 92 | 92 | 0.22 |
| 93 | 93 | 0.957 |
| 94 | 94 | 0.261 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.805 |
| 97 | 97 | 0.391 |
| 98 | 98 | 0.164 |
| 99 | 99 | 0.00262 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11328
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000179 human bronchial smooth muscle cell sample
FF:0000998 adult tissue sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000167 (smooth muscle cell sample)
0000004 (tissue sample)
0000179 (human bronchial smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
