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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005273
|accession_numbers=CAGE;DRX008546;DRR009418;DRZ000843;DRZ002228;DRZ012193;DRZ013578
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002570
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000270
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.76!56.79!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.62!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.56!39.96!MSC;;chr11:46299199..46299233,+!p1@CREB3L1!1.55!169.21!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.53!575.64!FOSB;;chr8:72756267..72756296,-!p4@MSC!1.48!42.07!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.10!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!1.44!35.76!RUNX1;;chr1:170633262..170633285,+!p3@PRRX1!1.39!26.88!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.34!54.22!HIC1;;chr8:72756667..72756736,-!p2@MSC!1.34!32.02!MSC;;chr7:44143978..44143989,+!p2@AEBP1!1.24!30.15!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.23!344.96!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!1.23!15.89!HOXC8;;chr8:72756063..72756125,-!p1@MSC!1.15!26.88!MSC;;chr8:72756213..72756243,-!p5@MSC!1.15!17.06!MSC;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.59!NFATC2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.85!NFE2L1;;chr8:72756380..72756427,-!p8@MSC!1.13!12.62!MSC;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.39!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!1.11!11.92!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.45!EBF2;;chr1:158979872..158979898,+!p3@IFI16!1.09!34.82!IFI16;;chr16:54320617..54320643,-!p3@IRX3!1.09!14.72!IRX3;;chr8:49833948..49833973,-!p2@SNAI2!1.08!71.05!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.21!TWIST1;;chr19:54058073..54058088,+!p1@ZNF331!1.06!10.52!ZNF331;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.52!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.05!578.67!ATF5;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.66!IRX3;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.84!NFATC4;;chr15:57511609..57511651,+!p2@TCF12!1.04!17.06!TCF12;;chr8:49833978..49833996,-!p1@SNAI2!1.03!200.76!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!1.03!32.02!TWIST2;;chr14:75745523..75745537,+!p1@FOS!1.01!1114.58!FOS;;chr2:119604456..119604501,-!p2@EN1!0.99!8.88!EN1;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.22!HIC1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.41!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.88!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.59!EGR2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.69!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.94!7.71!ZEB1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.71!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.71!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.58!AEBP1;;chr7:27205136..27205164,-!p1@HOXA9!0.93!7.48!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.62!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.15!TWIST2;;chr19:50435736..50435781,+!p3@ATF5!0.90!9.82!ATF5;;chr10:131762504..131762555,-!p1@EBF3!0.90!7.01!EBF3;;chr7:27192185..27192209,-!p1@HOXA3!0.90!7.01!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.75!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.78!HOXC10;;chr12:52445218..52445237,+!p1@NR4A1!0.87!85.07!NR4A1;;chr6:45296048..45296082,+!p1@RUNX2!0.87!7.48!RUNX2;;chr10:63809106..63809127,+!p1@ARID5B!0.85!86.71!ARID5B;;chr16:54320675..54320715,-!p1@IRX3!0.84!13.32!IRX3;;chr15:96874145..96874166,+!p7@NR2F2!0.84!11.92!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.65!IRX3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.71!FOS;;chr10:119303078..119303169,+!p2@EMX2!0.84!5.84!EMX2;;chr9:110252035..110252057,-!p1@KLF4!0.82!96.06!KLF4;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.41!IRX5;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.61!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.25!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.92!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.38!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.38!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.80!5.38!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.80!5.38!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.82!ZFP106;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.14!ZNF668;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.14!HOXA9;;chr1:200379104..200379128,-!p2@ZNF281!0.78!13.09!ZNF281;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.92!NR4A3;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.31!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.77!51.42!HIF1A;;chr2:19558373..19558392,-!p1@OSR1!0.77!14.26!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.77!4.91!PITX2;;chr12:54402790..54402805,+!p2@HOXC8!0.77!4.91!HOXC8;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.91!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.77!4.91!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.75!167.57!HES1;;chr9:102584159..102584174,+!p2@NR4A3!0.75!8.88!NR4A3;;chr14:95236440..95236465,-!p1@GSC!0.75!4.67!GSC;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.15!TWIST1;;chr8:72756194..72756208,-!p9@MSC!0.74!4.44!MSC;;chr18:19749541..19749557,+!p1@GATA6!0.73!14.96!GATA6;;chr9:16870710..16870763,-!p1@BNC2!0.73!7.95!BNC2;;chr21:36260343..36260402,-!p6@RUNX1!0.73!7.48!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.01!ZBTB38;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.54!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.31!HOXB7;;chr11:120107344..120107351,+!p1@POU2F3!0.73!5.38!POU2F3;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.31!GATA6;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.21!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.72!4.21!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.89!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.11!BHLHE40;;chr8:99956662..99956684,+!p1@OSR2!0.71!6.78!OSR2;;chr17:46675420..46675465,-!p3@HOXB6!0.71!4.91!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!0.70!3.97!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.70!3.97!HOXC8;;chr12:57853634..57853662,+!p2@GLI1!0.70!3.97!GLI1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.97!HAND2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.44!TCF4;;chr5:137801160..137801176,+!p1@EGR1!0.68!437.28!EGR1;;chr14:75894714..75894733,+!p1@JDP2!0.68!123.63!JDP2;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.38!THAP2;;chr11:46333934..46333963,+!p5@CREB3L1!0.68!3.74!CREB3L1;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.74!CSDA;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.74!HOXC6;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.74!HAND2;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.74!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.74!PRRX2;;chr16:54320322..54320343,-!p7@IRX3!0.68!3.74!IRX3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.68!3.74!RUNX1T1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.67!IFI16;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.69!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!0.67!6.78!FOXP2;;chr17:46688334..46688385,-!p1@HOXB7!0.67!5.61!HOXB7;;chr19:33865009..33865090,+!p3@CEBPG!0.67!5.14!CEBPG;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.26!CREB5;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.58!NR2F2;;chr1:221052776..221052799,+!p1@HLX!0.66!7.01!HLX;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.18!NR2F2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.08!RUNX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.51!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.65!3.51!HOXA11;;chr10:31608127..31608156,+!p1@ZEB1!0.64!73.39!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.64!11.45!MSX1;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.28!NFATC1;;chr3:12329397..12329433,+!p2@PPARG!0.64!8.65!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.64!6.08!GLI2;;chr3:71114066..71114114,-!p1@FOXP1!0.63!78.29!FOXP1;;chr12:48298765..48298783,-!p2@VDR!0.63!7.48!VDR;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.54!NR1D1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.27!HOXB6;;chr1:170632762..170632786,+!p13@PRRX1!0.63!3.27!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.27!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.63!3.27!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.27!RFX8;;chr10:114710244..114710257,+!p3@TCF7L2!0.62!9.82!TCF7L2;;chr2:157189180..157189290,-!p1@NR4A2!0.61!18.93!NR4A2;;chr2:121493425..121493474,+!p1@GLI2!0.61!7.71!GLI2;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.14!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.61!5.14!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.61!3.04!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.04!PRRX1;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.04!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.04!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.60!130.88!DDIT3;;chr21:36260463..36260480,-!p9@RUNX1!0.60!4.21!RUNX1;;chr1:59249688..59249703,-!p3@JUN!0.59!21.03!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.59!14.49!ZNF521;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.52!SMARCD3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.84!NR2F2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!4.91!MEIS3P2;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.51!KLF4;;chr1:212782094..212782109,+!p1@ATF3!0.58!93.95!ATF3;;chr15:96874012..96874042,+!p2@NR2F2!0.58!31.08!NR2F2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.58!18.93!ZNF10;;chr1:158979851..158979865,+!p5@IFI16!0.58!7.01!IFI16;;chr1:211433417..211433428,+!p17@RCOR3!0.58!2.80!RCOR3;;chr17:46659728..46659749,-!p3@HOXB3!0.58!2.80!HOXB3;;chr3:141087454..141087465,+!p19@ZBTB38!0.58!2.80!ZBTB38;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.80!MAFK;;chr8:77593750..77593757,+!p3@ZFHX4!0.58!2.80!ZFHX4;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.80!EMX2;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.65!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.01!HOXB2;;chr18:3449821..3449860,+!p7@TGIF1!0.57!5.61!TGIF1;;chr15:96874216..96874236,+!p13@NR2F2!0.57!4.67!NR2F2;;chr3:170076314..170076334,+!p2@SKIL!0.57!3.74!SKIL;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.26!TOX2;;chr21:36259445..36259519,-!p4@RUNX1!0.56!8.65!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.56!4.67!PAWR;;chr3:114343768..114343822,-!p1@ZBTB20!0.55!13.56!ZBTB20;;chr2:74229812..74229867,+!p1@TET3!0.55!7.48!TET3;;chr10:63809134..63809145,+!p6@ARID5B!0.55!6.78!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.55!5.14!TBX18;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!4.91!CREB3L2;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.67!MEIS3;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.97!NR2F2;;chr3:141105705..141105770,+!p4@ZBTB38!0.55!3.27!ZBTB38;;chr19:54041669..54041697,+!p2@ZNF3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|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.76!56.79!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.62!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.56!39.96!MSC;;chr11:46299199..46299233,+!p1@CREB3L1!1.55!169.21!CREB3L1;;chr19:45971246..45971265,+!p1@FOSB!1.53!575.64!FOSB;;chr8:72756267..72756296,-!p4@MSC!1.48!42.07!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.10!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!1.44!35.76!RUNX1;;chr1:170633262..170633285,+!p3@PRRX1!1.39!26.88!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.34!54.22!HIC1;;chr8:72756667..72756736,-!p2@MSC!1.34!32.02!MSC;;chr7:44143978..44143989,+!p2@AEBP1!1.24!30.15!AEBP1;;chr7:44143925..44143970,+!p1@AEBP1!1.23!344.96!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!1.23!15.89!HOXC8;;chr8:72756063..72756125,-!p1@MSC!1.15!26.88!MSC;;chr8:72756213..72756243,-!p5@MSC!1.15!17.06!MSC;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.59!NFATC2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.85!NFE2L1;;chr8:72756380..72756427,-!p8@MSC!1.13!12.62!MSC;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.39!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!1.11!11.92!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.10!11.45!EBF2;;chr1:158979872..158979898,+!p3@IFI16!1.09!34.82!IFI16;;chr16:54320617..54320643,-!p3@IRX3!1.09!14.72!IRX3;;chr8:49833948..49833973,-!p2@SNAI2!1.08!71.05!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.21!TWIST1;;chr19:54058073..54058088,+!p1@ZNF331!1.06!10.52!ZNF331;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.52!PRRX1;;chr19:50432453..50432468,+!p1@ATF5!1.05!578.67!ATF5;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.66!IRX3;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.84!NFATC4;;chr15:57511609..57511651,+!p2@TCF12!1.04!17.06!TCF12;;chr8:49833978..49833996,-!p1@SNAI2!1.03!200.76!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!1.03!32.02!TWIST2;;chr14:75745523..75745537,+!p1@FOS!1.01!1114.58!FOS;;chr2:119604456..119604501,-!p2@EN1!0.99!8.88!EN1;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.22!HIC1;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.41!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.88!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.59!EGR2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.69!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.94!7.71!ZEB1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.71!HOXC5;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.71!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.58!AEBP1;;chr7:27205136..27205164,-!p1@HOXA9!0.93!7.48!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.62!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.15!TWIST2;;chr19:50435736..50435781,+!p3@ATF5!0.90!9.82!ATF5;;chr10:131762504..131762555,-!p1@EBF3!0.90!7.01!EBF3;;chr7:27192185..27192209,-!p1@HOXA3!0.90!7.01!HOXA3;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.75!EGR1;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.78!HOXC10;;chr12:52445218..52445237,+!p1@NR4A1!0.87!85.07!NR4A1;;chr6:45296048..45296082,+!p1@RUNX2!0.87!7.48!RUNX2;;chr10:63809106..63809127,+!p1@ARID5B!0.85!86.71!ARID5B;;chr16:54320675..54320715,-!p1@IRX3!0.84!13.32!IRX3;;chr15:96874145..96874166,+!p7@NR2F2!0.84!11.92!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.65!IRX3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.71!FOS;;chr10:119303078..119303169,+!p2@EMX2!0.84!5.84!EMX2;;chr9:110252035..110252057,-!p1@KLF4!0.82!96.06!KLF4;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.41!IRX5;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.61!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.25!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.92!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.38!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.38!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.80!5.38!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.80!5.38!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.82!ZFP106;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.14!ZNF668;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.14!HOXA9;;chr1:200379104..200379128,-!p2@ZNF281!0.78!13.09!ZNF281;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.92!NR4A3;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.31!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.77!51.42!HIF1A;;chr2:19558373..19558392,-!p1@OSR1!0.77!14.26!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.77!4.91!PITX2;;chr12:54402790..54402805,+!p2@HOXC8!0.77!4.91!HOXC8;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.91!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.77!4.91!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.75!167.57!HES1;;chr9:102584159..102584174,+!p2@NR4A3!0.75!8.88!NR4A3;;chr14:95236440..95236465,-!p1@GSC!0.75!4.67!GSC;;chr7:19157043..19157088,-!p2@TWIST1!0.74!12.15!TWIST1;;chr8:72756194..72756208,-!p9@MSC!0.74!4.44!MSC;;chr18:19749541..19749557,+!p1@GATA6!0.73!14.96!GATA6;;chr9:16870710..16870763,-!p1@BNC2!0.73!7.95!BNC2;;chr21:36260343..36260402,-!p6@RUNX1!0.73!7.48!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.01!ZBTB38;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.54!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.31!HOXB7;;chr11:120107344..120107351,+!p1@POU2F3!0.73!5.38!POU2F3;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.31!GATA6;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.21!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.72!4.21!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.89!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.11!BHLHE40;;chr8:99956662..99956684,+!p1@OSR2!0.71!6.78!OSR2;;chr17:46675420..46675465,-!p3@HOXB6!0.71!4.91!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!0.70!3.97!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.70!3.97!HOXC8;;chr12:57853634..57853662,+!p2@GLI1!0.70!3.97!GLI1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.97!HAND2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.44!TCF4;;chr5:137801160..137801176,+!p1@EGR1!0.68!437.28!EGR1;;chr14:75894714..75894733,+!p1@JDP2!0.68!123.63!JDP2;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.38!THAP2;;chr11:46333934..46333963,+!p5@CREB3L1!0.68!3.74!CREB3L1;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.74!CSDA;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.74!HOXC6;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.74!HAND2;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.74!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.74!PRRX2;;chr16:54320322..54320343,-!p7@IRX3!0.68!3.74!IRX3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.68!3.74!RUNX1T1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.67!IFI16;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.69!EGR3;;chr7:113726357..113726443,+!p1@FOXP2!0.67!6.78!FOXP2;;chr17:46688334..46688385,-!p1@HOXB7!0.67!5.61!HOXB7;;chr19:33865009..33865090,+!p3@CEBPG!0.67!5.14!CEBPG;;chr7:28448965..28448994,+!p2@CREB5!0.66!14.26!CREB5;;chr15:96874244..96874259,+!p5@NR2F2!0.66!9.58!NR2F2;;chr1:221052776..221052799,+!p1@HLX!0.66!7.01!HLX;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.18!NR2F2;;chr21:36260295..36260310,-!p3@RUNX1!0.65!6.08!RUNX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.51!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.65!3.51!HOXA11;;chr10:31608127..31608156,+!p1@ZEB1!0.64!73.39!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.64!11.45!MSX1;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.28!NFATC1;;chr3:12329397..12329433,+!p2@PPARG!0.64!8.65!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.64!6.08!GLI2;;chr3:71114066..71114114,-!p1@FOXP1!0.63!78.29!FOXP1;;chr12:48298765..48298783,-!p2@VDR!0.63!7.48!VDR;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.54!NR1D1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.27!HOXB6;;chr1:170632762..170632786,+!p13@PRRX1!0.63!3.27!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.63!3.27!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.63!3.27!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.27!RFX8;;chr10:114710244..114710257,+!p3@TCF7L2!0.62!9.82!TCF7L2;;chr2:157189180..157189290,-!p1@NR4A2!0.61!18.93!NR4A2;;chr2:121493425..121493474,+!p1@GLI2!0.61!7.71!GLI2;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.14!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.61!5.14!TSHZ3;;chr1:170632647..170632659,+!p17@PRRX1!0.61!3.04!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.04!PRRX1;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.04!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.04!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.60!130.88!DDIT3;;chr21:36260463..36260480,-!p9@RUNX1!0.60!4.21!RUNX1;;chr1:59249688..59249703,-!p3@JUN!0.59!21.03!JUN;;chr18:22932080..22932170,-!p1@ZNF521!0.59!14.49!ZNF521;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.52!SMARCD3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.84!NR2F2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!4.91!MEIS3P2;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.51!KLF4;;chr1:212782094..212782109,+!p1@ATF3!0.58!93.95!ATF3;;chr15:96874012..96874042,+!p2@NR2F2!0.58!31.08!NR2F2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.58!18.93!ZNF10;;chr1:158979851..158979865,+!p5@IFI16!0.58!7.01!IFI16;;chr1:211433417..211433428,+!p17@RCOR3!0.58!2.80!RCOR3;;chr17:46659728..46659749,-!p3@HOXB3!0.58!2.80!HOXB3;;chr3:141087454..141087465,+!p19@ZBTB38!0.58!2.80!ZBTB38;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.80!MAFK;;chr8:77593750..77593757,+!p3@ZFHX4!0.58!2.80!ZFHX4;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.80!EMX2;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.65!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.01!HOXB2;;chr18:3449821..3449860,+!p7@TGIF1!0.57!5.61!TGIF1;;chr15:96874216..96874236,+!p13@NR2F2!0.57!4.67!NR2F2;;chr3:170076314..170076334,+!p2@SKIL!0.57!3.74!SKIL;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.26!TOX2;;chr21:36259445..36259519,-!p4@RUNX1!0.56!8.65!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.56!4.67!PAWR;;chr3:114343768..114343822,-!p1@ZBTB20!0.55!13.56!ZBTB20;;chr2:74229812..74229867,+!p1@TET3!0.55!7.48!TET3;;chr10:63809134..63809145,+!p6@ARID5B!0.55!6.78!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.55!5.14!TBX18;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!4.91!CREB3L2;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.67!MEIS3;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.97!NR2F2;;chr3:141105705..141105770,+!p4@ZBTB38!0.55!3.27!ZBTB38;;chr19:54041669..54041697,+!p2@ZNF3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor2.CNhs12364.11748-123G2.hg38.nobarcode.ctss.bed.gz
|id=FF:11748-123G2
|id=FF:11748-123G2
|is_a=EFO:0002091;;FF:0000270
|is_a=EFO:0002091;;FF:0000270
|is_obsolete=
|is_obsolete=
|library_id=CNhs12364
|library_id_phase_based=2:CNhs12364
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11748
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11748
|name=mesenchymal precursor cell - adipose, donor2
|name=mesenchymal precursor cell - adipose, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12364,LSID914,release011,COMPLETED
|profile_hcage=CNhs12364,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 58: Line 79:
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|sample_cell_line=
Line 79: Line 101:
|top_motifs=TAL1_TCF{3,4,12}:1.82309008187;ZNF238:1.64154714482;ALX4:1.49595885508;ATF6:1.46355695433;MAFB:1.40624871417;HOX{A5,B5}:1.4060817386;XBP1:1.38809027303;ESR1:1.38682660819;HIF1A:1.33923301968;EN1,2:1.23706711543;UFEwm:1.18546797366;NKX3-1:1.17167369546;GZF1:1.109090983;RXRA_VDR{dimer}:1.01807276233;HES1:0.944760313568;NR3C1:0.934895425686;NANOG{mouse}:0.920472047955;SRF:0.904794833974;MYBL2:0.888380516249;NFIX:0.879610000041;NFATC1..3:0.836264046177;NKX2-2,8:0.825574829581;EVI1:0.795168943961;GFI1B:0.775455825522;MZF1:0.772059552428;TEAD1:0.771611617185;PAX8:0.738191130265;TLX1..3_NFIC{dimer}:0.737126961585;EBF1:0.726116396188;PAX4:0.713440194738;HLF:0.708814620146;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.683363372807;GLI1..3:0.682078658377;ZNF384:0.678718461518;GTF2I:0.678061227237;TFAP4:0.65969571333;RXR{A,B,G}:0.658266280889;KLF4:0.649556390438;TP53:0.615305580668;HSF1,2:0.610806423348;SOX17:0.60441053737;NFE2L2:0.566885083239;HOX{A4,D4}:0.543979381203;NR6A1:0.503825993324;TFCP2:0.488672822575;ZIC1..3:0.450818425125;STAT1,3:0.449273604189;YY1:0.434283120039;CREB1:0.426932170663;NFE2L1:0.39834692725;BACH2:0.386253279841;PAX1,9:0.3621511691;MAZ:0.356108845536;IKZF1:0.355451211879;PATZ1:0.353370011056;NKX3-2:0.352105164325;LHX3,4:0.326164066413;bHLH_family:0.321972317309;TLX2:0.320897298059;GFI1:0.31179162164;NKX2-1,4:0.292980184276;STAT2,4,6:0.280333554082;TFAP2B:0.238749828493;GCM1,2:0.23631603741;ATF4:0.209974138282;TBX4,5:0.194063425463;PRDM1:0.190814154197;FOS_FOS{B,L1}_JUN{B,D}:0.188404737149;TBP:0.186852247747;AIRE:0.186402371092;DBP:0.182850997207;ELK1,4_GABP{A,B1}:0.180063005831;POU6F1:0.171122231777;CEBPA,B_DDIT3:0.167735230988;MTE{core}:0.152004693287;PAX5:0.143684349719;RFX1:0.143340308872;AHR_ARNT_ARNT2:0.142980210261;RREB1:0.142502243532;GTF2A1,2:0.132704222502;NFE2:0.120487982166;RUNX1..3:0.111125992236;TFAP2{A,C}:0.0912242210167;CDC5L:0.0734584269635;HMGA1,2:0.066475970084;ZNF148:0.0629839755005;TEF:0.0623583225481;GATA4:0.0507549746681;IRF1,2:0.044173235042;XCPE1{core}:0.0402203294848;FOSL2:0.025325073378;ZBTB6:0.0235219165464;FOXA2:0.0200644017105;ZNF143:-0.00104017974556;NKX6-1,2:-0.0117160216447;FOXL1:-0.0121322269166;AR:-0.0146671423937;ZNF423:-0.0341657858197;PAX2:-0.0406014259922;EGR1..3:-0.0417379287906;HAND1,2:-0.0521098386433;MYFfamily:-0.0712854535389;ESRRA:-0.0735207115839;MEF2{A,B,C,D}:-0.0880178883458;BPTF:-0.0907772239818;NRF1:-0.0936959989141;HNF1A:-0.112060652887;HMX1:-0.114796606107;POU3F1..4:-0.115662559197;NFIL3:-0.131850244344;POU5F1:-0.141533487193;ZBTB16:-0.144002894368;JUN:-0.149243274321;HBP1_HMGB_SSRP1_UBTF:-0.150747836027;ATF5_CREB3:-0.15990884253;EP300:-0.161141749194;SREBF1,2:-0.182182220866;FOX{I1,J2}:-0.182928815614;SPZ1:-0.188553861921;HOX{A6,A7,B6,B7}:-0.18859911872;FOXM1:-0.192149637994;MYB:-0.199518524469;DMAP1_NCOR{1,2}_SMARC:-0.206665718853;ARID5B:-0.233394830184;REST:-0.264824996844;NFY{A,B,C}:-0.287204355124;SMAD1..7,9:-0.294981535739;NFKB1_REL_RELA:-0.30416078645;FOXO1,3,4:-0.323311492782;TOPORS:-0.332690159451;ELF1,2,4:-0.340517809973;LEF1_TCF7_TCF7L1,2:-0.34792331831;PRRX1,2:-0.351931049603;PAX3,7:-0.354275355609;MED-1{core}:-0.363388382265;FOXP3:-0.369120263619;NHLH1,2:-0.369340393666;ZFP161:-0.398930868853;PBX1:-0.39944282075;E2F1..5:-0.40146270209;ATF2:-0.405690896416;SOX2:-0.40825172246;TFDP1:-0.414174229876;FOX{D1,D2}:-0.420379202218;HIC1:-0.420896314875;SP1:-0.435936574421;CDX1,2,4:-0.440191003905;HNF4A_NR2F1,2:-0.442586982483;SPI1:-0.450088572816;CRX:-0.458370306886;NR5A1,2:-0.461688812185;CUX2:-0.464776191716;IKZF2:-0.492214478237;RFX2..5_RFXANK_RFXAP:-0.509375119213;ALX1:-0.510502467355;NR1H4:-0.530654842357;OCT4_SOX2{dimer}:-0.53071425626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.585085180851;MTF1:-0.587469532561;GATA6:-0.58986954291;IRF7:-0.590070337471;SOX5:-0.594112199584;ETS1,2:-0.637859222384;POU2F1..3:-0.658803611774;SOX{8,9,10}:-0.668735653042;RBPJ:-0.680697509585;RORA:-0.687184052839;STAT5{A,B}:-0.693063447792;BREu{core}:-0.697084207625;SPIB:-0.697523303953;ONECUT1,2:-0.699926534354;VSX1,2:-0.711437116418;PPARG:-0.778481988491;TGIF1:-0.78245133128;LMO2:-0.803065618081;POU1F1:-0.848923690223;FOXD3:-0.855422562059;FOXP1:-0.855499154024;NKX2-3_NKX2-5:-0.856558212411;SNAI1..3:-0.9131297897;PAX6:-0.914892794577;FOX{F1,F2,J1}:-0.923343783638;FOXN1:-0.954006853819;T:-0.983485513438;FOXQ1:-0.983961342177;ZEB1:-1.0365295833;ADNP_IRX_SIX_ZHX:-1.05537438843;NANOG:-1.09281408536;HOXA9_MEIS1:-1.12905840999;PITX1..3:-1.32060048206;PDX1:-1.42150438081;MYOD1:-1.583353745
|top_motifs=TAL1_TCF{3,4,12}:1.82309008187;ZNF238:1.64154714482;ALX4:1.49595885508;ATF6:1.46355695433;MAFB:1.40624871417;HOX{A5,B5}:1.4060817386;XBP1:1.38809027303;ESR1:1.38682660819;HIF1A:1.33923301968;EN1,2:1.23706711543;UFEwm:1.18546797366;NKX3-1:1.17167369546;GZF1:1.109090983;RXRA_VDR{dimer}:1.01807276233;HES1:0.944760313568;NR3C1:0.934895425686;NANOG{mouse}:0.920472047955;SRF:0.904794833974;MYBL2:0.888380516249;NFIX:0.879610000041;NFATC1..3:0.836264046177;NKX2-2,8:0.825574829581;EVI1:0.795168943961;GFI1B:0.775455825522;MZF1:0.772059552428;TEAD1:0.771611617185;PAX8:0.738191130265;TLX1..3_NFIC{dimer}:0.737126961585;EBF1:0.726116396188;PAX4:0.713440194738;HLF:0.708814620146;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.683363372807;GLI1..3:0.682078658377;ZNF384:0.678718461518;GTF2I:0.678061227237;TFAP4:0.65969571333;RXR{A,B,G}:0.658266280889;KLF4:0.649556390438;TP53:0.615305580668;HSF1,2:0.610806423348;SOX17:0.60441053737;NFE2L2:0.566885083239;HOX{A4,D4}:0.543979381203;NR6A1:0.503825993324;TFCP2:0.488672822575;ZIC1..3:0.450818425125;STAT1,3:0.449273604189;YY1:0.434283120039;CREB1:0.426932170663;NFE2L1:0.39834692725;BACH2:0.386253279841;PAX1,9:0.3621511691;MAZ:0.356108845536;IKZF1:0.355451211879;PATZ1:0.353370011056;NKX3-2:0.352105164325;LHX3,4:0.326164066413;bHLH_family:0.321972317309;TLX2:0.320897298059;GFI1:0.31179162164;NKX2-1,4:0.292980184276;STAT2,4,6:0.280333554082;TFAP2B:0.238749828493;GCM1,2:0.23631603741;ATF4:0.209974138282;TBX4,5:0.194063425463;PRDM1:0.190814154197;FOS_FOS{B,L1}_JUN{B,D}:0.188404737149;TBP:0.186852247747;AIRE:0.186402371092;DBP:0.182850997207;ELK1,4_GABP{A,B1}:0.180063005831;POU6F1:0.171122231777;CEBPA,B_DDIT3:0.167735230988;MTE{core}:0.152004693287;PAX5:0.143684349719;RFX1:0.143340308872;AHR_ARNT_ARNT2:0.142980210261;RREB1:0.142502243532;GTF2A1,2:0.132704222502;NFE2:0.120487982166;RUNX1..3:0.111125992236;TFAP2{A,C}:0.0912242210167;CDC5L:0.0734584269635;HMGA1,2:0.066475970084;ZNF148:0.0629839755005;TEF:0.0623583225481;GATA4:0.0507549746681;IRF1,2:0.044173235042;XCPE1{core}:0.0402203294848;FOSL2:0.025325073378;ZBTB6:0.0235219165464;FOXA2:0.0200644017105;ZNF143:-0.00104017974556;NKX6-1,2:-0.0117160216447;FOXL1:-0.0121322269166;AR:-0.0146671423937;ZNF423:-0.0341657858197;PAX2:-0.0406014259922;EGR1..3:-0.0417379287906;HAND1,2:-0.0521098386433;MYFfamily:-0.0712854535389;ESRRA:-0.0735207115839;MEF2{A,B,C,D}:-0.0880178883458;BPTF:-0.0907772239818;NRF1:-0.0936959989141;HNF1A:-0.112060652887;HMX1:-0.114796606107;POU3F1..4:-0.115662559197;NFIL3:-0.131850244344;POU5F1:-0.141533487193;ZBTB16:-0.144002894368;JUN:-0.149243274321;HBP1_HMGB_SSRP1_UBTF:-0.150747836027;ATF5_CREB3:-0.15990884253;EP300:-0.161141749194;SREBF1,2:-0.182182220866;FOX{I1,J2}:-0.182928815614;SPZ1:-0.188553861921;HOX{A6,A7,B6,B7}:-0.18859911872;FOXM1:-0.192149637994;MYB:-0.199518524469;DMAP1_NCOR{1,2}_SMARC:-0.206665718853;ARID5B:-0.233394830184;REST:-0.264824996844;NFY{A,B,C}:-0.287204355124;SMAD1..7,9:-0.294981535739;NFKB1_REL_RELA:-0.30416078645;FOXO1,3,4:-0.323311492782;TOPORS:-0.332690159451;ELF1,2,4:-0.340517809973;LEF1_TCF7_TCF7L1,2:-0.34792331831;PRRX1,2:-0.351931049603;PAX3,7:-0.354275355609;MED-1{core}:-0.363388382265;FOXP3:-0.369120263619;NHLH1,2:-0.369340393666;ZFP161:-0.398930868853;PBX1:-0.39944282075;E2F1..5:-0.40146270209;ATF2:-0.405690896416;SOX2:-0.40825172246;TFDP1:-0.414174229876;FOX{D1,D2}:-0.420379202218;HIC1:-0.420896314875;SP1:-0.435936574421;CDX1,2,4:-0.440191003905;HNF4A_NR2F1,2:-0.442586982483;SPI1:-0.450088572816;CRX:-0.458370306886;NR5A1,2:-0.461688812185;CUX2:-0.464776191716;IKZF2:-0.492214478237;RFX2..5_RFXANK_RFXAP:-0.509375119213;ALX1:-0.510502467355;NR1H4:-0.530654842357;OCT4_SOX2{dimer}:-0.53071425626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.585085180851;MTF1:-0.587469532561;GATA6:-0.58986954291;IRF7:-0.590070337471;SOX5:-0.594112199584;ETS1,2:-0.637859222384;POU2F1..3:-0.658803611774;SOX{8,9,10}:-0.668735653042;RBPJ:-0.680697509585;RORA:-0.687184052839;STAT5{A,B}:-0.693063447792;BREu{core}:-0.697084207625;SPIB:-0.697523303953;ONECUT1,2:-0.699926534354;VSX1,2:-0.711437116418;PPARG:-0.778481988491;TGIF1:-0.78245133128;LMO2:-0.803065618081;POU1F1:-0.848923690223;FOXD3:-0.855422562059;FOXP1:-0.855499154024;NKX2-3_NKX2-5:-0.856558212411;SNAI1..3:-0.9131297897;PAX6:-0.914892794577;FOX{F1,F2,J1}:-0.923343783638;FOXN1:-0.954006853819;T:-0.983485513438;FOXQ1:-0.983961342177;ZEB1:-1.0365295833;ADNP_IRX_SIX_ZHX:-1.05537438843;NANOG:-1.09281408536;HOXA9_MEIS1:-1.12905840999;PITX1..3:-1.32060048206;PDX1:-1.42150438081;MYOD1:-1.583353745
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11748-123G2;search_select_hide=table117:FF:11748-123G2
}}
}}

Latest revision as of 18:17, 4 June 2020

Name:mesenchymal precursor cell - adipose, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12364
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005273
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12364 CAGE DRX008546 DRR009418
Accession ID Hg19

Library idBAMCTSS
CNhs12364 DRZ000843 DRZ002228
Accession ID Hg38

Library idBAMCTSS
CNhs12364 DRZ012193 DRZ013578
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0141
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.231
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0881
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.835
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0919
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0606
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0912
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0772
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0912
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.167
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0912
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.126
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.167
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0912
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.654
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.508
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.697
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.492
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.736
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.916
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12364

Jaspar motifP-value
MA0002.20.4
MA0003.10.578
MA0004.10.826
MA0006.10.902
MA0007.10.752
MA0009.10.149
MA0014.10.515
MA0017.10.36
MA0018.20.107
MA0019.10.388
MA0024.10.00652
MA0025.10.322
MA0027.10.412
MA0028.10.718
MA0029.10.12
MA0030.10.128
MA0031.10.0258
MA0035.20.00958
MA0038.10.534
MA0039.20.018
MA0040.10.349
MA0041.10.599
MA0042.10.901
MA0043.10.836
MA0046.10.0603
MA0047.20.925
MA0048.10.0102
MA0050.10.135
MA0051.10.483
MA0052.10.365
MA0055.10.00783
MA0057.10.85
MA0058.10.662
MA0059.10.201
MA0060.10.0101
MA0061.10.211
MA0062.20.00413
MA0065.20.33
MA0066.10.891
MA0067.10.809
MA0068.10.92
MA0069.10.182
MA0070.10.245
MA0071.10.737
MA0072.10.764
MA0073.10.851
MA0074.10.217
MA0076.10.563
MA0077.10.102
MA0078.10.942
MA0079.20.368
MA0080.22.65693e-8
MA0081.10.0132
MA0083.11.23998e-4
MA0084.10.104
MA0087.10.87
MA0088.10.701
MA0090.10.0123
MA0091.10.131
MA0092.10.493
MA0093.10.57
MA0099.20.0181
MA0100.10.612
MA0101.10.0711
MA0102.20.795
MA0103.11.68282e-4
MA0104.20.971
MA0105.10.583
MA0106.10.145
MA0107.10.0317
MA0108.20.109
MA0111.10.165
MA0112.20.0207
MA0113.10.198
MA0114.10.31
MA0115.10.433
MA0116.10.912
MA0117.10.16
MA0119.10.435
MA0122.10.125
MA0124.10.109
MA0125.10.0371
MA0131.10.669
MA0135.10.384
MA0136.13.18198e-10
MA0137.20.331
MA0138.20.637
MA0139.10.867
MA0140.10.154
MA0141.10.896
MA0142.10.65
MA0143.10.453
MA0144.10.52
MA0145.10.532
MA0146.10.484
MA0147.10.795
MA0148.10.559
MA0149.10.365
MA0150.10.119
MA0152.11.22386e-4
MA0153.10.322
MA0154.10.775
MA0155.10.332
MA0156.18.3243e-6
MA0157.10.0841
MA0159.10.834
MA0160.10.0647
MA0162.10.209
MA0163.10.0369
MA0164.10.97
MA0258.10.592
MA0259.10.734



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12364

Novel motifP-value
10.973
100.751
1000.308
1010.51
1020.0958
1030.878
1040.728
1050.189
1060.893
1070.44
1080.683
1090.797
110.714
1100.0799
1110.488
1120.467
1135.05905e-4
1140.839
1150.769
1160.219
1170.194
1180.74
1190.547
120.762
1200.397
1210.946
1220.0194
1231.75085e-4
1240.137
1250.925
1260.666
1270.623
1280.905
1290.534
130.543
1300.488
1310.794
1320.864
1330.132
1340.196
1350.503
1360.737
1370.656
1380.602
1390.72
140.039
1400.548
1410.526
1420.893
1430.613
1440.724
1450.517
1460.635
1470.0909
1480.144
1490.0515
150.629
1500.126
1510.475
1520.0297
1530.411
1540.929
1550.0145
1560.293
1570.974
1580.00907
1590.141
160.113
1600.398
1610.48
1620.511
1630.226
1640.0328
1650.648
1660.298
1670.765
1680.759
1690.0407
170.853
180.03
190.0418
20.92
200.94
210.0367
220.487
230.684
240.254
250.133
260.945
270.724
280.327
290.176
30.986
300.683
310.782
321.96779e-13
330.693
340.964
350.678
360.0232
370.0467
380.27
390.521
40.492
400.0354
410.0509
420.284
430.788
440.683
450.4
460.681
470.585
480.98
490.121
50.912
500.608
510.951
520.911
530.036
540.909
550.448
560.447
570.424
580.349
590.866
60.478
600.937
610.644
620.648
630.69
640.838
650.833
660.615
670.758
680.493
690.531
70.271
700.673
710.425
720.48
730.0205
740.042
750.136
760.69
770.264
780.0865
790.0668
80.632
800.724
810.728
820.843
830.699
840.87
850.6
860.215
870.362
880.667
890.309
90.688
900.944
910.351
920.748
930.978
940.633
950.0565
960.482
970.317
980.1
990.358



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12364


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000270 (mesenchymal precursor cell of adipose)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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