FF:12242-129H1: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Basophils, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12563
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	basophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-93-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004913

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12563		CAGE		DRX008046		DRR008918

Accession ID Hg19

Library id		BAM		CTSS
CNhs12563		DRZ000343		DRZ001728

Accession ID Hg38

Library id		BAM		CTSS
CNhs12563		DRZ011693		DRZ013078

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.141
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.141
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.188
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.263
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.247
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.409
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.141
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.271
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.602
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0.247
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.141
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.686
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.559
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.141
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.247
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.432
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.141
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.141
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.333
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.182
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.61
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.404
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.264
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.247
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.247
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0849
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.724
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.141
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.466
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.519
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.524
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.333
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.27
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.701
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.582
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.404
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.519
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.588
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.519
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.141
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.247
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0.141
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.741
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.333
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.141
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.519
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.404
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.777
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.247
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.61
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12563

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.38821e-14
MA0003.1	MA0003.1	0.944
MA0004.1	MA0004.1	0.649
MA0006.1	MA0006.1	0.498
MA0007.1	MA0007.1	0.342
MA0009.1	MA0009.1	0.136
MA0014.1	MA0014.1	0.989
MA0017.1	MA0017.1	0.493
MA0018.2	MA0018.2	0.00122
MA0019.1	MA0019.1	0.987
MA0024.1	MA0024.1	0.0799
MA0025.1	MA0025.1	1.62626e-4
MA0027.1	MA0027.1	0.869
MA0028.1	MA0028.1	0.698
MA0029.1	MA0029.1	0.418
MA0030.1	MA0030.1	0.034
MA0031.1	MA0031.1	0.0132
MA0035.2	MA0035.2	0.862
MA0038.1	MA0038.1	0.557
MA0039.2	MA0039.2	0.777
MA0040.1	MA0040.1	0.188
MA0041.1	MA0041.1	0.746
MA0042.1	MA0042.1	0.648
MA0043.1	MA0043.1	5.75609e-8
MA0046.1	MA0046.1	0.138
MA0047.2	MA0047.2	0.332
MA0048.1	MA0048.1	0.572
MA0050.1	MA0050.1	1.02412e-6
MA0051.1	MA0051.1	0.0117
MA0052.1	MA0052.1	0.271
MA0055.1	MA0055.1	0.188
MA0057.1	MA0057.1	0.253
MA0058.1	MA0058.1	0.438
MA0059.1	MA0059.1	0.64
MA0060.1	MA0060.1	5.64288e-4
MA0061.1	MA0061.1	9.87117e-17
MA0062.2	MA0062.2	1.22739e-6
MA0065.2	MA0065.2	0.196
MA0066.1	MA0066.1	0.0293
MA0067.1	MA0067.1	6.92611e-6
MA0068.1	MA0068.1	0.0922
MA0069.1	MA0069.1	0.525
MA0070.1	MA0070.1	0.0491
MA0071.1	MA0071.1	0.46
MA0072.1	MA0072.1	0.334
MA0073.1	MA0073.1	0.427
MA0074.1	MA0074.1	0.402
MA0076.1	MA0076.1	0.439
MA0077.1	MA0077.1	0.174
MA0078.1	MA0078.1	0.675
MA0079.2	MA0079.2	0.382
MA0080.2	MA0080.2	2.18717e-14
MA0081.1	MA0081.1	1.5226e-4
MA0083.1	MA0083.1	0.527
MA0084.1	MA0084.1	0.353
MA0087.1	MA0087.1	0.836
MA0088.1	MA0088.1	0.415
MA0090.1	MA0090.1	0.0258
MA0091.1	MA0091.1	0.922
MA0092.1	MA0092.1	0.612
MA0093.1	MA0093.1	0.719
MA0099.2	MA0099.2	6.13769e-31
MA0100.1	MA0100.1	0.708
MA0101.1	MA0101.1	6.31085e-12
MA0102.2	MA0102.2	4.12771e-7
MA0103.1	MA0103.1	0.0689
MA0104.2	MA0104.2	0.367
MA0105.1	MA0105.1	1.46812e-17
MA0106.1	MA0106.1	0.207
MA0107.1	MA0107.1	2.43293e-14
MA0108.2	MA0108.2	0.0235
MA0111.1	MA0111.1	0.524
MA0112.2	MA0112.2	0.0258
MA0113.1	MA0113.1	0.813
MA0114.1	MA0114.1	0.736
MA0115.1	MA0115.1	0.18
MA0116.1	MA0116.1	2.34314e-4
MA0117.1	MA0117.1	0.0111
MA0119.1	MA0119.1	0.707
MA0122.1	MA0122.1	0.884
MA0124.1	MA0124.1	0.873
MA0125.1	MA0125.1	0.103
MA0131.1	MA0131.1	0.932
MA0135.1	MA0135.1	0.814
MA0136.1	MA0136.1	1.99387e-20
MA0137.2	MA0137.2	0.771
MA0138.2	MA0138.2	0.166
MA0139.1	MA0139.1	0.943
MA0140.1	MA0140.1	0.841
MA0141.1	MA0141.1	0.635
MA0142.1	MA0142.1	0.888
MA0143.1	MA0143.1	0.819
MA0144.1	MA0144.1	0.326
MA0145.1	MA0145.1	0.659
MA0146.1	MA0146.1	0.786
MA0147.1	MA0147.1	0.481
MA0148.1	MA0148.1	0.245
MA0149.1	MA0149.1	0.562
MA0150.1	MA0150.1	1.26398e-13
MA0152.1	MA0152.1	0.145
MA0153.1	MA0153.1	0.0379
MA0154.1	MA0154.1	0.00331
MA0155.1	MA0155.1	0.605
MA0156.1	MA0156.1	9.32154e-19
MA0157.1	MA0157.1	0.0271
MA0159.1	MA0159.1	0.187
MA0160.1	MA0160.1	0.148
MA0162.1	MA0162.1	0.642
MA0163.1	MA0163.1	2.2898e-5
MA0164.1	MA0164.1	1
MA0258.1	MA0258.1	0.0849
MA0259.1	MA0259.1	0.971

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12563

Novel motif	Logo	P-value
1	1	0.346
10	10	0.0191
100	100	0.495
101	101	0.603
102	102	0.824
103	103	0.342
104	104	0.421
105	105	0.141
106	106	0.0101
107	107	0.962
108	108	0.522
109	109	0.352
11	11	0.345
110	110	0.605
111	111	0.265
112	112	0.525
113	113	0.124
114	114	0.117
115	115	0.16
116	116	0.461
117	117	0.0264
118	118	0.32
119	119	0.861
12	12	0.276
120	120	0.943
121	121	0.564
122	122	0.48
123	123	0.0977
124	124	0.508
125	125	0.541
126	126	0.135
127	127	0.627
128	128	0.189
129	129	0.998
13	13	0.293
130	130	0.381
131	131	0.855
132	132	0.0317
133	133	0.358
134	134	0.976
135	135	0.337
136	136	0.681
137	137	9.61216e-4
138	138	0.316
139	139	0.0534
14	14	0.3
140	140	0.497
141	141	0.466
142	142	0.123
143	143	0.00149
144	144	0.683
145	145	0.546
146	146	0.854
147	147	0.231
148	148	0.111
149	149	0.764
15	15	0.139
150	150	0.652
151	151	0.147
152	152	0.932
153	153	0.688
154	154	0.4
155	155	0.379
156	156	0.536
157	157	0.657
158	158	0.0786
159	159	0.0321
16	16	0.909
160	160	0.717
161	161	0.873
162	162	0.0695
163	163	0.509
164	164	0.175
165	165	0.32
166	166	0.797
167	167	0.337
168	168	0.175
169	169	0.466
17	17	0.602
18	18	0.271
19	19	0.931
2	2	0.574
20	20	0.484
21	21	0.899
22	22	0.674
23	23	0.22
24	24	0.547
25	25	0.142
26	26	0.3
27	27	0.946
28	28	0.328
29	29	0.127
3	3	0.268
30	30	0.305
31	31	0.884
32	32	0.0726
33	33	0.424
34	34	0.825
35	35	0.12
36	36	0.0825
37	37	0.217
38	38	0.696
39	39	0.847
4	4	0.92
40	40	0.466
41	41	0.00334
42	42	0.283
43	43	0.0565
44	44	0.653
45	45	0.997
46	46	0.349
47	47	0.722
48	48	0.674
49	49	0.112
5	5	0.188
50	50	0.663
51	51	0.458
52	52	0.621
53	53	0.369
54	54	0.55
55	55	0.8
56	56	0.918
57	57	0.951
58	58	0.0955
59	59	0.725
6	6	0.936
60	60	0.119
61	61	0.332
62	62	0.0664
63	63	0.959
64	64	0.512
65	65	0.556
66	66	0.263
67	67	0.877
68	68	0.344
69	69	0.707
7	7	0.194
70	70	0.15
71	71	0.0466
72	72	0.302
73	73	0.378
74	74	0.137
75	75	0.0761
76	76	0.15
77	77	0.52
78	78	0.661
79	79	0.781
8	8	0.927
80	80	0.00511
81	81	0.43
82	82	0.373
83	83	0.0411
84	84	0.498
85	85	0.0837
86	86	0.0226
87	87	0.511
88	88	0.811
89	89	0.587
9	9	0.402
90	90	0.0759
91	91	0.483
92	92	0.381
93	93	0.177
94	94	0.0796
95	95	0.132
96	96	0.387
97	97	0.96
98	98	0.389
99	99	3.68457e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12563

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000212 human basophil heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004913
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000094,CL:0000037,CL:0000566,CL:0000767,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX008046;DRR008918;DRZ000343;DRZ001728;DRZ011693;DRZ013078
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000013,FF:0000212
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.58!376.15!PLEK;;chr19:45971246..45971265,+!p1@FOSB!2.17!2573.19!FOSB;;chr12:54778471..54778528,-!p1@ZNF385A!2.12!131.65!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!2.10!123.98!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.02!190.76!RUNX3;;chr16:85932760..85932775,+!p1@IRF8!1.98!94.04!IRF8;;chr2:157189180..157189290,-!p1@NR4A2!1.96!445.24!NR4A2;;chr17:45810594..45810608,+!p1@TBX21!1.94!85.98!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.90!105.17!STAT4;;chr19:54041669..54041697,+!p2@ZNF331!1.83!66.02!ZNF331;;chr2:145277640..145277771,-!p1@ZEB2!1.79!772.65!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.78!142.02!CREM;;chr20:39317868..39317884,-!p1@MAFB!1.76!631.78!MAFB;;chr2:61108878..61108891,+!p5@REL!1.72!51.82!REL;;chr19:54058073..54058088,+!p1@ZNF331!1.68!46.83!ZNF331;;chr14:75745523..75745537,+!p1@FOS!1.67!5146.77!FOS;;chr6:106546808..106546833,+!p3@PRDM1!1.66!55.66!PRDM1;;chr20:56195474..56195506,-!p1@ZBP1!1.62!40.30!ZBP1;;chr7:50343634..50343717,+!p2@IKZF1!1.61!39.53!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.60!46.06!GATA3;;chr9:102584262..102584276,+!p1@NR4A3!1.59!81.76!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!1.58!36.85!SPI1;;chr2:145271342..145271377,-!p5@ZEB2!1.58!36.85!ZEB2;;chr9:3525727..3525828,-!p2@RFX3!1.56!88.66!RFX3;;chrY:21906594..21906622,-!p1@KDM5D!1.55!34.16!KDM5D;;chr9:117150254..117150271,-!p1@AKNA!1.54!89.82!AKNA;;chr2:231090433..231090469,+!p1@SP140!1.53!32.63!SP140;;chr15:60884706..60884743,-!p1@RORA!1.51!156.22!RORA;;chr20:50159198..50159299,-!p1@NFATC2!1.48!41.84!NFATC2;;chr21:36421347..36421380,-!p8@RUNX1!1.48!29.17!RUNX1;;chr6:391743..391759,+!p1@IRF4!1.47!28.40!IRF4;;chr19:16435625..16435682,+!p1@KLF2!1.46!862.08!KLF2;;chr9:110252035..110252057,-!p1@KLF4!1.46!423.75!KLF4;;chr3:63953435..63953499,+!p1@ATXN7!1.46!28.02!ATXN7;;chrX:106960180..106960197,-!p2@TSC22D3!1.43!96.34!TSC22D3;;chr2:68592394..68592405,+!p2@PLEK!1.42!25.33!PLEK;;chr7:50344289..50344323,+!p1@IKZF1!1.41!24.57!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!1.41!24.57!SPI1;;chr2:61108808..61108821,+!p3@REL!1.40!29.94!REL;;chr2:192015750..192015793,-!p2@STAT4!1.39!31.47!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.38!23.03!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.38!23.03!IKZF3;;chr12:54778351..54778378,-!p6@ZNF385A!1.37!22.26!ZNF385A;;chr1:26697243..26697258,-!p1@ZNF683!1.37!22.26!ZNF683;;chr5:142782823..142782854,-!p3@NR3C1!1.36!30.71!NR3C1;;chr4:57522166..57522260,-!p2@HOPX!1.36!24.95!HOPX;;chr10:35484090..35484104,+!p6@CREM!1.35!21.49!CREM;;chrX:106960221..106960236,-!p3@TSC22D3!1.34!57.19!TSC22D3;;chr3:39195075..39195088,-!p1@CSRNP1!1.33!123.98!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!51.05!NFKBIA;;chr10:3824332..3824425,-!p4@KLF6!1.33!32.24!KLF6;;chr2:61108695..61108753,+!p1@REL!1.32!134.34!REL;;chr8:67525443..67525459,-!p2@MYBL1!1.32!29.17!MYBL1;;chr14:35873947..35873965,-!p1@NFKBIA!1.31!1180.28!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!498.59!TSC22D3;;chr13:41593425..41593480,-!p1@ELF1!1.31!120.52!ELF1;;chr12:72056800..72056834,+!p1@THAP2!1.31!26.10!THAP2;;chr11:67007611..67007622,+!p6@KDM2A!1.29!24.57!KDM2A;;chr7:115670804..115670825,-!p1@TFEC!1.29!18.42!TFEC;;chr5:131826457..131826514,-!p1@IRF1!1.28!679.76!IRF1;;chr10:3827371..3827386,-!p2@KLF6!1.28!149.69!KLF6;;chr6:15246261..15246312,+!p1@JARID2!1.26!404.56!JARID2;;chr7:104654690..104654704,+!p2@MLL5!1.26!33.78!MLL5;;chr4:83822199..83822239,+!p2@THAP9!1.26!20.73!THAP9;;chr1:26697189..26697205,-!p2@ZNF683!1.25!16.89!ZNF683;;chr12:57914286..57914304,-!p1@DDIT3!1.24!575.36!DDIT3;;chr21:36260295..36260310,-!p3@RUNX1!1.24!26.48!RUNX1;;chr13:74707894..74707947,-!p6@KLF12!1.24!18.42!KLF12;;chr6:106546834..106546850,+!p4@PRDM1!1.24!16.50!PRDM1;;chr9:102584241..102584261,+!p4@NR4A3!1.23!24.57!NR4A3;;chr1:156470515..156470542,-!p2@MEF2D!1.22!80.22!MEF2D;;chr18:46475696..46475713,-!p1@SMAD7!1.22!17.66!SMAD7;;chr6:106546786..106546802,+!p6@PRDM1!1.21!15.35!PRDM1;;chr13:41593392..41593403,-!p7@ELF1!1.21!15.35!ELF1;;chr3:23986824..23986848,+!p2@NR1D2!1.20!81.37!NR1D2;;chr3:5020939..5020952,+!p2@BHLHE40!1.20!46.06!BHLHE40;;chr6:15246200..15246214,+!p2@JARID2!1.20!40.69!JARID2;;chr3:39195139..39195150,-!p3@CSRNP1!1.20!18.81!CSRNP1;;chr16:31885093..31885165,+!p1@ZNF267!1.19!218.78!ZNF267;;chr7:104654718..104654741,+!p3@MLL5!1.19!21.11!MLL5;;chr17:37934365..37934387,-!p2@IKZF3!1.19!14.59!IKZF3;;chr4:106068026..106068084,+!p1@TET2!1.18!124.74!TET2;;chr7:50344251..50344288,+!p3@IKZF1!1.18!14.20!IKZF1;;chr11:47399996..47400014,-!p4@SPI1!1.18!14.20!SPI1;;chr12:72056749..72056767,+!p6@THAP2!1.17!15.35!THAP2;;chr13:41593405..41593416,-!p9@ELF1!1.17!13.82!ELF1;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.82!ZFY;;chr7:50343895..50343936,+!p5@IKZF1!1.16!13.43!IKZF1;;chr2:70142232..70142251,+!p1@MXD1!1.15!72.93!MXD1;;chr12:72056773..72056796,+!p3@THAP2!1.15!16.89!THAP2;;chr7:137620684..137620711,-!p4@CREB3L2!1.15!13.05!CREB3L2;;chr8:60031619..60031676,-!p1@TOX!1.14!28.02!TOX;;chr9:102584278..102584285,+!p5@NR4A3!1.14!12.67!NR4A3;;chr19:54041645..54041661,+!p5@ZNF331!1.14!12.67!ZNF331;;chr4:57522674..57522699,-!p5@HOPX!1.14!12.67!HOPX;;chr10:3827389..3827408,-!p1@KLF6!1.13!949.59!KLF6;;chr11:67007548..67007610,+!p3@KDM2A!1.13!92.12!KDM2A;;chr2:208394817..208394834,+!p3@CREB1!1.13!50.28!CREB1;;chr14:64971461..64971542,+!p1@ZBTB1!1.12!244.12!ZBTB1;;chr1:25291475..25291511,-!p2@RUNX3!1.12!12.28!RUNX3;;chr6:106546731..106546755,+!p5@PRDM1!1.11!11.90!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.90!CREB3L2;;chr2:28615716..28615733,+!p1@FOSL2!1.10!541.58!FOSL2;;chr19:45971060..45971122,+!p3@FOSB!1.10!11.51!FOSB;;chr2:97202480..97202499,+!p1@ARID5A!1.09!114.00!ARID5A;;chr1:10754477..10754517,-!p1@CASZ1!1.09!18.81!CASZ1;;chr2:174828545..174828644,-!p1@SP3!1.08!170.42!SP3;;chr1:59249688..59249703,-!p3@JUN!1.08!66.02!JUN;;chr3:18486354..18486377,-!p2@SATB1!1.08!13.82!SATB1;;chr4:57522598..57522664,-!p3@HOPX!1.08!11.13!HOPX;;chr11:128563948..128564003,+!p1@FLI1!1.07!130.50!FLI1;;chr5:172483347..172483407,+!p1@C5orf41!1.06!79.45!CREBRF;;chr9:102584128..102584144,+!p3@NR4A3!1.06!20.34!NR4A3;;chr1:25256439..25256476,-!p3@RUNX3!1.06!10.36!RUNX3;;chr2:192015677..192015691,-!p3@STAT4!1.06!10.36!STAT4;;chr8:123793988..123794016,+!p1@ZHX2!1.05!18.04!ZHX2;;chrX:106960249..106960260,-!p5@TSC22D3!1.05!16.50!TSC22D3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.05!14.59!NFKBIZ;;chr14:75746722..75746777,+!p2@FOS!1.05!13.05!FOS;;chr19:12902289..12902307,+!p1@JUNB!1.04!2315.26!JUNB;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!519.32!NFKBIZ;;chr6:106534192..106534224,+!p1@PRDM1!1.04!28.40!PRDM1;;chr9:110250697..110250738,-!p2@KLF4!1.04!11.90!KLF4;;chr17:38020557..38020572,-!p4@IKZF3!1.04!9.98!IKZF3;;chr4:83822246..83822277,+!p5@THAP9!1.04!9.98!THAP9;;chr3:5021113..5021180,+!p1@BHLHE40!1.03!683.98!BHLHE40;;chr1:212782094..212782109,+!p1@ATF3!1.03!270.22!ATF3;;chr9:129567282..129567353,+!p1@ZBTB43!1.03!129.73!ZBTB43;;chr8:67525473..67525518,-!p1@MYBL1!1.03!22.26!MYBL1;;chr8:71316428..71316459,-!p2@NCOA2!1.03!16.50!NCOA2;;chr2:145275162..145275202,-!p2@ZEB2!1.02!56.81!ZEB2;;chr10:64576105..64576133,-!p1@EGR2!1.02!19.58!EGR2;;chr10:51572408..51572454,+!p3@NCOA4!1.01!54.50!NCOA4;;chr2:28616358..28616380,+!p3@FOSL2!1.01!48.75!FOSL2;;chr7:106809470..106809481,+!p2@HBP1!1.01!13.05!HBP1;;chr12:54694758..54694805,-!p1@NFE2!1.01!11.13!NFE2;;chr17:38497662..38497713,+!p4@RARA!1.01!10.75!RARA;;chr16:89789271..89789291,+!p5@ZNF276!1.01!9.21!ZNF276;;chr17:45810816..45810838,+!p2@TBX21!1.01!9.21!TBX21;;chr11:47400032..47400043,-!p5@SPI1!1.01!9.21!SPI1;;chr2:8822176..8822196,+!p1@ID2!1.00!1287.75!ID2;;chr4:38665769..38665801,+!p2@KLF3!1.00!82.52!KLF3;;chr20:44600199..44600219,-!p3@ZNF335!1.00!12.28!ZNF335;;chr7:17338324..17338341,+!p3@AHR!0.99!30.32!AHR;;chr10:35416142..35416169,+!p3@CREM!0.99!23.80!CREM;;chr6:106534230..106534254,+!p2@PRDM1!0.99!22.26!PRDM1;;chr3:63898321..63898396,+!p3@ATXN7!0.99!20.34!ATXN7;;chr19:19729477..19729542,-!p1@PBX4!0.99!19.19!PBX4;;chr1:151030536..151030549,+!p8@MLLT11!0.99!8.83!MLLT11;;chr3:27763807..27763822,-!p1@EOMES!0.99!8.83!EOMES;;chr1:59249707..59249727,-!p1@JUN!0.98!370.40!JUN;;chr4:103422499..103422632,+!p1@NFKB1!0.98!181.94!NFKB1;;chr19:12721790..12721810,+!p2@ZNF791!0.98!24.18!ZNF791;;chr11:47400045..47400060,-!p6@SPI1!0.98!8.44!SPI1;;chr6:151712673..151712709,-!p1@ZBTB2!0.97!48.75!ZBTB2;;chr1:157108130..157108173,-!p1@ETV3!0.96!61.03!ETV3;;chr3:39195037..39195069,-!p2@CSRNP1!0.96!52.20!CSRNP1;;chr7:149470641..149470694,-!p1@ZNF467!0.96!38.00!ZNF467;;chr16:3313791..3313834,+!p2@ZNF263!0.96!18.42!ZNF263;;chr17:37934204..37934241,-!p3@IKZF3!0.96!8.06!IKZF3;;chr21:34442439..34442455,+!p1@OLIG1!0.96!8.06!OLIG1;;chr14:35874077..35874091,-!p8@NFKBIA!0.96!8.06!NFKBIA;;chr3:128212033..128212051,-!p1@GATA2!0.96!8.06!GATA2;;chr19:47616992..47617011,-!p4@ZC3H4!0.95!17.27!ZC3H4;;chr1:157108282..157108347,-!p3@ETV3!0.95!16.89!ETV3;;chr8:81397846..81397860,+!p3@ZBTB10!0.95!9.98!ZBTB10;;chr6:144385698..144385742,-!p2@PLAGL1!0.95!9.60!PLAGL1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.94!98.64!ZC3H12A;;chr10:3827417..3827428,-!p3@KLF6!0.94!67.94!KLF6;;chr20:48807456..48807475,+!p3@CEBPB!0.94!15.35!CEBPB;;chr3:150126904..150126958,+!p7@TSC22D2!0.94!13.82!TSC22D2;;chr9:110252074..110252079,-!p3@KLF4!0.94!13.05!KLF4;;chr7:99680193..99680204,-!p2@ZNF3!0.94!7.68!ZNF3;;chr1:2160609..2160623,+!p8@SKI!0.94!7.68!SKI;;chr16:29819630..29819645,+!p37@MAZ!0.94!7.68!MAZ;;chr17:38020516..38020544,-!p5@IKZF3!0.94!7.68!IKZF3;;chr22:38597987..38598021,+!p2@MAFF!0.93!47.21!MAFF;;chr19:45252008..45252024,+!p2@BCL3!0.93!25.72!BCL3;;chr22:50247528..50247568,+!p2@ZBED4!0.93!18.81!ZBED4;;chr8:81397820..81397836,+!p2@ZBTB10!0.93!9.60!ZBTB10;;chr4:38665810..38665827,+!p1@KLF3!0.92!112.08!KLF3;;chr10:104154246..104154347,+!p3@NFKB2!0.92!47.21!NFKB2;;chr19:53289995..53290050,-!p1@ZNF600!0.92!31.47!ZNF600;;chr21:30671690..30671762,+!p2@BACH1!0.92!25.72!BACH1;;chr19:45251395..45251432,+!p8@BCL3!0.92!7.29!BCL3;;chr1:92951607..92951661,-!p1@GFI1!0.92!7.29!GF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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000767;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor2.CNhs12563.12242-129H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:12242-129H1
 |is_a=EFO:0002091;;FF:0000212
 |is_obsolete=
+|library_id=CNhs12563
+|library_id_phase_based=2:CNhs12563
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12242
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12242
 |name=Basophils, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12563,LSID921,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_catalog_number=3H100-93-5
@@ Line 58: / Line 79: @@
 |rna_weight_ug=1.62792
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 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=RUNX1..3:3.97760703373;RORA:3.4628167701;ETS1,2:3.30712987554;RFX2..5_RFXANK_RFXAP:2.92301840255;DMAP1_NCOR{1,2}_SMARC:2.90818587495;ATF5_CREB3:2.90711199811;NFIL3:2.87765810838;SPIB:2.83203274713;SPI1:2.78081616597;PAX2:2.77069239346;ELF1,2,4:2.74881902629;T:2.74499693266;NFKB1_REL_RELA:2.63121551136;FOSL2:2.62791633654;PAX3,7:2.61268054879;FOX{D1,D2}:2.58682868621;FOS_FOS{B,L1}_JUN{B,D}:2.56149697731;FOXO1,3,4:2.55383102465;CREB1:2.48077986173;BACH2:2.4328150556;NFE2:2.34397890407;NANOG{mouse}:2.24527192706;BPTF:2.14401570806;TGIF1:2.1275771042;ATF4:2.10073530273;HLF:1.96579468631;FOX{F1,F2,J1}:1.92741695219;HMGA1,2:1.88623475075;IRF1,2:1.86589748139;JUN:1.82973716414;RFX1:1.79685897257;CEBPA,B_DDIT3:1.76047283223;FOXN1:1.70885553483;RXRA_VDR{dimer}:1.70188453077;NFATC1..3:1.67507978173;HMX1:1.64162946204;EP300:1.5725142189;NFE2L2:1.50315455534;NKX2-1,4:1.42017563554;TBX4,5:1.41907664319;MAFB:1.39164334368;HIF1A:1.37511544577;SREBF1,2:1.32147111937;ATF2:1.30272495327;FOXP3:1.27296042272;NFE2L1:1.27199273931;IRF7:1.19132015375;ATF6:0.869728601963;SMAD1..7,9:0.833173246953;PAX6:0.766323665076;HBP1_HMGB_SSRP1_UBTF:0.688520523221;FOX{I1,J2}:0.674105299768;NANOG:0.633615687994;STAT2,4,6:0.56571348805;GATA6:0.537591352518;CDX1,2,4:0.484133538817;SOX2:0.442142427677;TLX2:0.435325105609;GLI1..3:0.435277709333;BREu{core}:0.405311789451;PDX1:0.402637582165;MYB:0.363790617218;RBPJ:0.316221319426;NR1H4:0.192439339438;DBP:0.159605122694;TFAP4:0.0944496571539;PAX8:-0.02193240975;HSF1,2:-0.0248234520748;PPARG:-0.0424838739345;POU2F1..3:-0.0543309020149;MYFfamily:-0.0609869132655;AHR_ARNT_ARNT2:-0.0929503799164;CRX:-0.0946515474497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.117274238384;GCM1,2:-0.129616550814;FOXP1:-0.129929068165;HOXA9_MEIS1:-0.147487509037;XBP1:-0.149275988773;SOX5:-0.16995249316;POU5F1:-0.184639960122;FOXA2:-0.197435307379;ALX4:-0.210996725045;NHLH1,2:-0.235827893741;TFDP1:-0.276897381532;MEF2{A,B,C,D}:-0.281796191046;EN1,2:-0.301401750861;SRF:-0.312793640869;ESRRA:-0.323103322124;GATA4:-0.336989809159;HOX{A5,B5}:-0.353322194792;TFCP2:-0.358453134572;SPZ1:-0.370698871103;TAL1_TCF{3,4,12}:-0.385269755524;ZNF238:-0.389513319444;NFIX:-0.42144628424;ELK1,4_GABP{A,B1}:-0.436862871881;HES1:-0.443840794305;PITX1..3:-0.449769117693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.451851033468;PAX4:-0.457770179364;ZNF384:-0.462339569371;VSX1,2:-0.477944383983;FOXD3:-0.483832333957;NKX2-2,8:-0.504534934009;LEF1_TCF7_TCF7L1,2:-0.534078361421;NR5A1,2:-0.5618605204;EGR1..3:-0.609164864636;TBP:-0.613705162611;PBX1:-0.615677276551;OCT4_SOX2{dimer}:-0.639358148618;NKX3-1:-0.643920120401;MZF1:-0.659098880316;MED-1{core}:-0.670398703154;MTF1:-0.673056360455;ZBTB16:-0.685454934011;E2F1..5:-0.691748781981;NFY{A,B,C}:-0.700032617746;MTE{core}:-0.701845033337;STAT5{A,B}:-0.705812387791;PRRX1,2:-0.746208408406;IKZF2:-0.762391538574;PATZ1:-0.785575448866;MYOD1:-0.796007875953;STAT1,3:-0.813742852901;ZEB1:-0.819660643558;HNF1A:-0.819691318949;ZFP161:-0.821175871272;ALX1:-0.851562291179;AIRE:-0.852951366065;HNF4A_NR2F1,2:-0.910221347393;PAX5:-0.925388405525;FOXM1:-0.965159302569;FOXL1:-0.969139353703;SOX{8,9,10}:-0.973269509205;SNAI1..3:-1.00143646534;ZNF148:-1.0253422488;REST:-1.02735164014;CUX2:-1.04566571645;NR3C1:-1.08391840561;NKX2-3_NKX2-5:-1.13533668025;ESR1:-1.16588680793;NRF1:-1.22291127532;TFAP2B:-1.23640456107;PRDM1:-1.23930730884;YY1:-1.27174092146;RXR{A,B,G}:-1.27291516897;ZBTB6:-1.29418429596;ZNF423:-1.3121499015;HOX{A6,A7,B6,B7}:-1.35211499161;MAZ:-1.35405365546;SP1:-1.37363301218;FOXQ1:-1.37529695815;ADNP_IRX_SIX_ZHX:-1.41878850542;MYBL2:-1.4500365683;GFI1B:-1.46092135039;bHLH_family:-1.49790273349;AR:-1.50385375368;TFAP2{A,C}:-1.53702204076;GTF2I:-1.53847011378;LHX3,4:-1.58068416768;TLX1..3_NFIC{dimer}:-1.58292988059;POU1F1:-1.59891795707;TP53:-1.62419470981;LMO2:-1.63939858154;NKX6-1,2:-1.65847110821;GFI1:-1.6916632042;CDC5L:-1.72415511001;HIC1:-1.73330654049;RREB1:-1.7736583286;GZF1:-1.79204303878;GTF2A1,2:-1.83588372334;NR6A1:-1.87394899808;TEAD1:-1.89406272716;ZIC1..3:-1.91707413153;TEF:-1.94206202323;ZNF143:-1.95456889078;EVI1:-1.97358671486;PAX1,9:-2.02412330952;TOPORS:-2.12541693771;HAND1,2:-2.13882383303;SOX17:-2.14423977584;IKZF1:-2.16016246313;KLF4:-2.16165185734;EBF1:-2.20800723275;XCPE1{core}:-2.21926407987;HOX{A4,D4}:-2.27682069292;ARID5B:-2.27971747573;UFEwm:-2.61758216366;NKX3-2:-2.63423009154;POU6F1:-2.79003022373;ONECUT1,2:-3.04223271514;POU3F1..4:-3.09680935287
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12242-129H1;search_select_hide=table117:FF:12242-129H1
 }}

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FF:12242-129H1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0