FF:10012-101C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005144 | ||
|HumanCAGEScanFiles=NCig10014;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/brain%252c%2520adult%252c%2520pool1.NCig10014.10012-101C3.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008626;DRR009498;DRZ000923;DRZ002308;DRZ012273;DRZ013658 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010012 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.77!592.70!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.36!230.44!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!174.96!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.17!146.94!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.13!147.69!RORB;;chr9:114287433..114287513,+!p1@ZNF483!1.99!241.48!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.94!97.22!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.94!86.09!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.93!171.71!C11orf9;;chr10:64134120..64134183,+!p1@ZNF365!1.89!90.73!ZNF365;;chr14:29235961..29236008,+!p1@FOXG1!1.84!67.81!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.83!67.07!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.79!101.40!ZEB2;;chr5:88178983..88179012,-!p1@MEF2C!1.78!437.40!MEF2C;;chr3:181429704..181429722,+!p1@SOX2!1.78!59.56!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.77!57.42!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.72!51.86!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!63.82!PRDM8;;chr21:34442540..34442560,+!p2@OLIG1!1.69!47.96!OLIG1;;chr15:80733570..80733659,+!p2@ARNT2!1.68!47.22!ARNT2;;chr12:106976774..106976788,+!p1@RFX4!1.68!46.66!RFX4;;chr12:26277817..26277863,-!p2@BHLHE41!1.66!59.56!BHLHE41;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.90!SMARCE1;;chr15:80735246..80735321,+!p3@ARNT2!1.62!41.10!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.60!55.38!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.94!POU3F3;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.76!ZMAT4;;chr8:53322304..53322340,-!p1@ST18!1.58!37.29!ST18;;chr2:2334997..2335053,-!p1@MYT1L!1.56!35.62!MYT1L;;chr19:13135582..13135600,+!p3@NFIX!1.56!35.07!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.55!34.32!SOX8;;chr18:53070846..53070902,-!p6@TCF4!1.54!33.67!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.53!126.81!MEF2C;;chr19:13135386..13135435,+!p4@NFIX!1.51!31.36!NFIX;;chr2:60781201..60781258,-!p3@BCL11A!1.49!29.87!BCL11A;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!29.87!NKX6-2;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.85!SOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.46!27.92!ZIM2;;chr22:41763452..41763466,+!p2@TEF!1.46!27.55!TEF;;chrX:25034067..25034088,-!p1@ARX!1.44!26.72!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.32!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.42!25.51!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.17!ZNF488;;chr2:95963052..95963106,+!p1@KCNIP3!1.40!24.12!KCNIP3;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.47!NEUROD6;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.64!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.37!22.26!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.80!PROX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.33!29.41!ZBTB16;;chrX:85969626..85969664,+!p1@DACH2!1.32!19.95!DACH2;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.76!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!1.31!224.13!MLLT11;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.35!SOX15;;chr4:57522166..57522260,-!p2@HOPX!1.30!21.52!HOPX;;chr9:126774018..126774055,+!p1@LHX2!1.30!18.74!LHX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.29!64.84!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.28!18.18!PKNOX2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.72!TBR1;;chr8:53322347..53322378,-!p2@ST18!1.25!16.88!ST18;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.97!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.20!149.82!SOX9;;chr2:166428839..166428859,+!p2@CSRNP3!1.20!14.75!CSRNP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.19!17.81!ZBTB38;;chr12:54779511..54779577,-!p5@ZNF385A!1.19!14.66!ZNF385A;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.38!ZNF727;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.29!NPAS3;;chr11:8102846..8102892,+!p1@TUB!1.17!19.11!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.17!13.82!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.17!13.82!HIF3A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.73!POU3F3;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.36!OLIG1;;chrX:118739835..118739862,-!p1@NKRF!1.15!14.56!NKRF;;chrY:21906594..21906622,-!p1@KDM5D!1.15!12.99!KDM5D;;chr9:77112225..77112238,+!p2@RORB!1.14!12.89!RORB;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.69!MLLT11;;chr14:58798013..58798071,+!p2@ARID4A!1.13!12.34!ARID4A;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.21!KLF15;;chr2:145275982..145276003,-!p7@ZEB2!1.12!12.25!ZEB2;;chr1:2461692..2461710,-!p1@HES5!1.12!12.06!HES5;;chr8:145560371..145560449,-!p1@SCRT1!1.12!12.06!SCRT1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.01!ID4;;chr3:24536253..24536328,-!p1@THRB!1.11!22.64!THRB;;chr12:54785074..54785122,-!p2@ZNF385A!1.11!18.55!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.11!14.47!NR2F1;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.78!ZNF238;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.50!KCNIP3;;chr19:38085768..38085821,+!p1@ZNF540!1.09!17.16!ZNF540;;chr6:126112039..126112062,+!p8@NCOA7!1.09!13.64!NCOA7;;chr19:38720294..38720348,-!p1@DPF1!1.07!13.36!DPF1;;chr2:145277640..145277771,-!p1@ZEB2!1.06!142.03!ZEB2;;chr10:38265517..38265591,-!p1@ZNF25!1.06!40.63!ZNF25;;chr2:162273241..162273253,+!p4@TBR1!1.06!10.58!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.58!SALL1;;chr4:57522598..57522664,-!p3@HOPX!1.06!10.48!HOPX;;chr8:60031682..60031710,-!p2@TOX!1.05!16.88!TOX;;chr13:100634031..100634045,+!p1@ZIC2!1.05!10.30!ZIC2;;chr15:31658288..31658338,+!p4@KLF13!1.05!10.20!KLF13;;chr19:30863271..30863338,+!p1@ZNF536!1.05!10.11!ZNF536;;chr3:141105235..141105307,+!p7@ZBTB38!1.05!10.11!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.71!BCL11A;;chr10:64133862..64133884,+!p4@ZNF365!1.04!10.02!ZNF365;;chrX:118739782..118739829,-!p2@NKRF!1.03!9.65!NKRF;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!632.03!TSC22D1;;chr17:38256822..38256851,-!p1@NR1D1!1.02!75.23!NR1D1;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.68!ZBTB16;;chr10:31610110..31610159,+!p2@ZEB1!1.02!9.56!ZEB1;;chr8:22550530..22550609,-!p2@EGR3!1.02!9.46!EGR3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.17!BHLHE41;;chr2:192015750..192015793,-!p2@STAT4!1.01!12.52!STAT4;;chr19:7580549..7580596,+!p3@ZNF358!1.01!9.28!ZNF358;;chr19:46800289..46800327,+!p2@HIF3A!1.01!9.18!HIF3A;;chr7:28725740..28725778,+!p1@CREB5!1.00!82.56!CREB5;;chr21:39870339..39870443,-!p1@ERG!1.00!9.09!ERG;;chr6:15401104..15401166,+!p5@JARID2!1.00!8.91!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.00!8.91!TBR1;;chr17:38219209..38219230,+!p1@THRA!0.99!118.00!THRA;;chr17:17726907..17726958,-!p2@SREBF1!0.98!54.92!SREBF1;;chr17:38256877..38256900,-!p2@NR1D1!0.98!28.11!NR1D1;;chr8:145560111..145560165,-!p2@SCRT1!0.98!8.53!SCRT1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.53!ZSCAN1;;chr10:64133910..64133925,+!p5@ZNF365!0.98!8.53!ZNF365;;chr19:13135731..13135787,+!p10@NFIX!0.98!8.44!NFIX;;chr3:52001396..52001425,-!p4@PCBP4!0.97!15.03!PCBP4;;chr2:166428861..166428883,+!p3@CSRNP3!0.97!8.35!CSRNP3;;chr4:26344778..26344807,+!p8@RBPJ!0.97!8.35!RBPJ;;chr12:103351444..103351461,+!p1@ASCL1!0.97!8.35!ASCL1;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.26!RBPJ;;chr20:42544782..42544828,+!p4@TOX2!0.97!8.26!TOX2;;chr6:126112074..126112144,+!p1@NCOA7!0.96!111.69!NCOA7;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.32!NFIA;;chr19:13134772..13134822,+!p2@NFIX!0.96!12.06!NFIX;;chr6:143266185..143266238,-!p2@HIVEP2!0.96!11.50!HIVEP2;;chr2:68592406..68592424,+!p1@PLEK!0.96!8.16!PLEK;;chr12:103352277..103352324,+!p2@ASCL1!0.96!8.07!ASCL1;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.95!MXI1;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.09!TCF4;;chr11:125034605..125034636,+!p2@PKNOX2!0.95!7.89!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!0.95!7.89!HEYL;;chr17:38219143..38219154,+!p2@THRA!0.94!28.20!THRA;;chr1:8585945..8586056,-!p3@RERE!0.94!26.44!RERE;;chr2:162273254..162273267,+!p6@TBR1!0.94!7.79!TBR1;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.79!ZNF385D;;chr2:2330039..2330072,-!p6@MYT1L!0.93!7.61!MYT1L;;chr2:2328725..2328739,-!p5@MYT1L!0.93!7.51!MYT1L;;chr2:42721205..42721307,+!p4@MTA3!0.93!7.51!MTA3;;chr3:147127142..147127168,+!p1@ZIC1!0.93!7.51!ZIC1;;chr18:53070913..53070933,-!p16@TCF4!0.93!7.51!TCF4;;chr11:31832862..31832884,-!p2@PAX6!0.93!7.51!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.93!7.42!BHLHE41;;chr2:180726291..180726311,-!p1@ZNF385B!0.93!7.42!ZNF385B;;chr9:126774058..126774081,+!p3@LHX2!0.93!7.42!LHX2;;chr19:13135566..13135577,+!p9@NFIX!0.93!7.42!NFIX;;chrX:106959661..106959763,-!p4@TSC22D3!0.92!22.45!TSC22D3;;chr1:151032833..151032850,+!p3@MLLT11!0.92!16.88!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.03!MLLT11;;chr3:126076264..126076305,-!p2@KLF15!0.92!10.30!KLF15;;chr1:151032739..151032748,+!p6@MLLT11!0.92!9.28!MLLT11;;chr11:8102819..8102845,+!p3@TUB!0.92!9.28!TUB;;chr9:126773880..126773895,+!p2@LHX2!0.92!7.33!LHX2;;chr16:51185318..51185348,-!p2@SALL1!0.92!7.33!SALL1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.33!IRF8;;chr3:24536332..24536358,-!p2@THRB!0.92!7.24!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.91!9.83!STAT4;;chr10:64134045..64134083,+!p3@ZNF365!0.91!7.14!ZNF365;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.14!ZBTB16;;chr7:150974206..150974255,-!p1@SMARCD3!0.90!45.27!SMARCD3;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.75!SATB1;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.72!PBX1;;chr18:52989031..52989079,-!p2@TCF4!0.90!17.07!TCF4;;chr2:2328299..2328363,-!p3@MYT1L!0.90!6.96!MYT1L;;chr12:24102576..24102623,-!p2@SOX5!0.90!6.96!SOX5;;chr19:21512202..21512225,-!p1@ZNF708!0.89!36.64!ZNF708;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.48!SALL2;;chr2:178128250..178128293,-!p6@NFE2L2!0.89!17.72!NFE2L2;;chr2:162273196..162273210,+!p5@TBR1!0.89!6.68!TBR1;;chr5:88179230..88179270,-!p4@MEF2C!0.88!13.36!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.88!7.79!NPAS3;;chr5:138609489..138609542,+!p8@MATR3!0.88!6.59!MATR3;;chr19:53636125..53636178,-!p1@ZNF415!0.87!19.20!ZNF415;;chr7:64023410..64023428,-!p2@ZNF680!0.87!10.48!ZNF680;;chr16:79634624..79634642,-!p1@MAF!0.86!26.16!MAF;;chr19:57183114..57183145,-!p1@ZNF835!0.86!7.14!ZNF835;;chr15:80696410..80696477,+!p6@ARNT2!0.86!6.22!ARNT2;;chr22:41777927.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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.77!592.70!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.36!230.44!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!174.96!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.17!146.94!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.13!147.69!RORB;;chr9:114287433..114287513,+!p1@ZNF483!1.99!241.48!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.94!97.22!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.94!86.09!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.93!171.71!C11orf9;;chr10:64134120..64134183,+!p1@ZNF365!1.89!90.73!ZNF365;;chr14:29235961..29236008,+!p1@FOXG1!1.84!67.81!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.83!67.07!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.79!101.40!ZEB2;;chr5:88178983..88179012,-!p1@MEF2C!1.78!437.40!MEF2C;;chr3:181429704..181429722,+!p1@SOX2!1.78!59.56!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.77!57.42!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.72!51.86!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!63.82!PRDM8;;chr21:34442540..34442560,+!p2@OLIG1!1.69!47.96!OLIG1;;chr15:80733570..80733659,+!p2@ARNT2!1.68!47.22!ARNT2;;chr12:106976774..106976788,+!p1@RFX4!1.68!46.66!RFX4;;chr12:26277817..26277863,-!p2@BHLHE41!1.66!59.56!BHLHE41;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.90!SMARCE1;;chr15:80735246..80735321,+!p3@ARNT2!1.62!41.10!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.60!55.38!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.94!POU3F3;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.76!ZMAT4;;chr8:53322304..53322340,-!p1@ST18!1.58!37.29!ST18;;chr2:2334997..2335053,-!p1@MYT1L!1.56!35.62!MYT1L;;chr19:13135582..13135600,+!p3@NFIX!1.56!35.07!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.55!34.32!SOX8;;chr18:53070846..53070902,-!p6@TCF4!1.54!33.67!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.53!126.81!MEF2C;;chr19:13135386..13135435,+!p4@NFIX!1.51!31.36!NFIX;;chr2:60781201..60781258,-!p3@BCL11A!1.49!29.87!BCL11A;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!29.87!NKX6-2;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.85!SOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.46!27.92!ZIM2;;chr22:41763452..41763466,+!p2@TEF!1.46!27.55!TEF;;chrX:25034067..25034088,-!p1@ARX!1.44!26.72!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.32!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.42!25.51!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.17!ZNF488;;chr2:95963052..95963106,+!p1@KCNIP3!1.40!24.12!KCNIP3;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.47!NEUROD6;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.64!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.37!22.26!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.80!PROX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.33!29.41!ZBTB16;;chrX:85969626..85969664,+!p1@DACH2!1.32!19.95!DACH2;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.76!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!1.31!224.13!MLLT11;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.35!SOX15;;chr4:57522166..57522260,-!p2@HOPX!1.30!21.52!HOPX;;chr9:126774018..126774055,+!p1@LHX2!1.30!18.74!LHX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.29!64.84!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.28!18.18!PKNOX2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.72!TBR1;;chr8:53322347..53322378,-!p2@ST18!1.25!16.88!ST18;;chr20:62680984..62680999,-!p1@SOX18!1.23!20.97!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.20!149.82!SOX9;;chr2:166428839..166428859,+!p2@CSRNP3!1.20!14.75!CSRNP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.19!17.81!ZBTB38;;chr12:54779511..54779577,-!p5@ZNF385A!1.19!14.66!ZNF385A;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.38!ZNF727;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.29!NPAS3;;chr11:8102846..8102892,+!p1@TUB!1.17!19.11!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.17!13.82!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.17!13.82!HIF3A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.73!POU3F3;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.36!OLIG1;;chrX:118739835..118739862,-!p1@NKRF!1.15!14.56!NKRF;;chrY:21906594..21906622,-!p1@KDM5D!1.15!12.99!KDM5D;;chr9:77112225..77112238,+!p2@RORB!1.14!12.89!RORB;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.69!MLLT11;;chr14:58798013..58798071,+!p2@ARID4A!1.13!12.34!ARID4A;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.21!KLF15;;chr2:145275982..145276003,-!p7@ZEB2!1.12!12.25!ZEB2;;chr1:2461692..2461710,-!p1@HES5!1.12!12.06!HES5;;chr8:145560371..145560449,-!p1@SCRT1!1.12!12.06!SCRT1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.01!ID4;;chr3:24536253..24536328,-!p1@THRB!1.11!22.64!THRB;;chr12:54785074..54785122,-!p2@ZNF385A!1.11!18.55!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.11!14.47!NR2F1;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.78!ZNF238;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.50!KCNIP3;;chr19:38085768..38085821,+!p1@ZNF540!1.09!17.16!ZNF540;;chr6:126112039..126112062,+!p8@NCOA7!1.09!13.64!NCOA7;;chr19:38720294..38720348,-!p1@DPF1!1.07!13.36!DPF1;;chr2:145277640..145277771,-!p1@ZEB2!1.06!142.03!ZEB2;;chr10:38265517..38265591,-!p1@ZNF25!1.06!40.63!ZNF25;;chr2:162273241..162273253,+!p4@TBR1!1.06!10.58!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.58!SALL1;;chr4:57522598..57522664,-!p3@HOPX!1.06!10.48!HOPX;;chr8:60031682..60031710,-!p2@TOX!1.05!16.88!TOX;;chr13:100634031..100634045,+!p1@ZIC2!1.05!10.30!ZIC2;;chr15:31658288..31658338,+!p4@KLF13!1.05!10.20!KLF13;;chr19:30863271..30863338,+!p1@ZNF536!1.05!10.11!ZNF536;;chr3:141105235..141105307,+!p7@ZBTB38!1.05!10.11!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.71!BCL11A;;chr10:64133862..64133884,+!p4@ZNF365!1.04!10.02!ZNF365;;chrX:118739782..118739829,-!p2@NKRF!1.03!9.65!NKRF;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!632.03!TSC22D1;;chr17:38256822..38256851,-!p1@NR1D1!1.02!75.23!NR1D1;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.68!ZBTB16;;chr10:31610110..31610159,+!p2@ZEB1!1.02!9.56!ZEB1;;chr8:22550530..22550609,-!p2@EGR3!1.02!9.46!EGR3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.17!BHLHE41;;chr2:192015750..192015793,-!p2@STAT4!1.01!12.52!STAT4;;chr19:7580549..7580596,+!p3@ZNF358!1.01!9.28!ZNF358;;chr19:46800289..46800327,+!p2@HIF3A!1.01!9.18!HIF3A;;chr7:28725740..28725778,+!p1@CREB5!1.00!82.56!CREB5;;chr21:39870339..39870443,-!p1@ERG!1.00!9.09!ERG;;chr6:15401104..15401166,+!p5@JARID2!1.00!8.91!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.00!8.91!TBR1;;chr17:38219209..38219230,+!p1@THRA!0.99!118.00!THRA;;chr17:17726907..17726958,-!p2@SREBF1!0.98!54.92!SREBF1;;chr17:38256877..38256900,-!p2@NR1D1!0.98!28.11!NR1D1;;chr8:145560111..145560165,-!p2@SCRT1!0.98!8.53!SCRT1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.53!ZSCAN1;;chr10:64133910..64133925,+!p5@ZNF365!0.98!8.53!ZNF365;;chr19:13135731..13135787,+!p10@NFIX!0.98!8.44!NFIX;;chr3:52001396..52001425,-!p4@PCBP4!0.97!15.03!PCBP4;;chr2:166428861..166428883,+!p3@CSRNP3!0.97!8.35!CSRNP3;;chr4:26344778..26344807,+!p8@RBPJ!0.97!8.35!RBPJ;;chr12:103351444..103351461,+!p1@ASCL1!0.97!8.35!ASCL1;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.26!RBPJ;;chr20:42544782..42544828,+!p4@TOX2!0.97!8.26!TOX2;;chr6:126112074..126112144,+!p1@NCOA7!0.96!111.69!NCOA7;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.32!NFIA;;chr19:13134772..13134822,+!p2@NFIX!0.96!12.06!NFIX;;chr6:143266185..143266238,-!p2@HIVEP2!0.96!11.50!HIVEP2;;chr2:68592406..68592424,+!p1@PLEK!0.96!8.16!PLEK;;chr12:103352277..103352324,+!p2@ASCL1!0.96!8.07!ASCL1;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.95!MXI1;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.09!TCF4;;chr11:125034605..125034636,+!p2@PKNOX2!0.95!7.89!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!0.95!7.89!HEYL;;chr17:38219143..38219154,+!p2@THRA!0.94!28.20!THRA;;chr1:8585945..8586056,-!p3@RERE!0.94!26.44!RERE;;chr2:162273254..162273267,+!p6@TBR1!0.94!7.79!TBR1;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.79!ZNF385D;;chr2:2330039..2330072,-!p6@MYT1L!0.93!7.61!MYT1L;;chr2:2328725..2328739,-!p5@MYT1L!0.93!7.51!MYT1L;;chr2:42721205..42721307,+!p4@MTA3!0.93!7.51!MTA3;;chr3:147127142..147127168,+!p1@ZIC1!0.93!7.51!ZIC1;;chr18:53070913..53070933,-!p16@TCF4!0.93!7.51!TCF4;;chr11:31832862..31832884,-!p2@PAX6!0.93!7.51!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.93!7.42!BHLHE41;;chr2:180726291..180726311,-!p1@ZNF385B!0.93!7.42!ZNF385B;;chr9:126774058..126774081,+!p3@LHX2!0.93!7.42!LHX2;;chr19:13135566..13135577,+!p9@NFIX!0.93!7.42!NFIX;;chrX:106959661..106959763,-!p4@TSC22D3!0.92!22.45!TSC22D3;;chr1:151032833..151032850,+!p3@MLLT11!0.92!16.88!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.03!MLLT11;;chr3:126076264..126076305,-!p2@KLF15!0.92!10.30!KLF15;;chr1:151032739..151032748,+!p6@MLLT11!0.92!9.28!MLLT11;;chr11:8102819..8102845,+!p3@TUB!0.92!9.28!TUB;;chr9:126773880..126773895,+!p2@LHX2!0.92!7.33!LHX2;;chr16:51185318..51185348,-!p2@SALL1!0.92!7.33!SALL1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.33!IRF8;;chr3:24536332..24536358,-!p2@THRB!0.92!7.24!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.91!9.83!STAT4;;chr10:64134045..64134083,+!p3@ZNF365!0.91!7.14!ZNF365;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.14!ZBTB16;;chr7:150974206..150974255,-!p1@SMARCD3!0.90!45.27!SMARCD3;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.75!SATB1;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.72!PBX1;;chr18:52989031..52989079,-!p2@TCF4!0.90!17.07!TCF4;;chr2:2328299..2328363,-!p3@MYT1L!0.90!6.96!MYT1L;;chr12:24102576..24102623,-!p2@SOX5!0.90!6.96!SOX5;;chr19:21512202..21512225,-!p1@ZNF708!0.89!36.64!ZNF708;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.48!SALL2;;chr2:178128250..178128293,-!p6@NFE2L2!0.89!17.72!NFE2L2;;chr2:162273196..162273210,+!p5@TBR1!0.89!6.68!TBR1;;chr5:88179230..88179270,-!p4@MEF2C!0.88!13.36!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.88!7.79!NPAS3;;chr5:138609489..138609542,+!p8@MATR3!0.88!6.59!MATR3;;chr19:53636125..53636178,-!p1@ZNF415!0.87!19.20!ZNF415;;chr7:64023410..64023428,-!p2@ZNF680!0.87!10.48!ZNF680;;chr16:79634624..79634642,-!p1@MAF!0.86!26.16!MAF;;chr19:57183114..57183145,-!p1@ZNF835!0.86!7.14!ZNF835;;chr15:80696410..80696477,+!p6@ARNT2!0.86!6.22!ARNT2;;chr22:41777927.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520adult%252c%2520pool1.CNhs10617.10012-101C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10012-101C3 | |id=FF:10012-101C3 | ||
|is_a=EFO:0002091;;FF:0010012 | |is_a=EFO:0002091;;FF:0010012 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10617 | |||
|library_id_phase_based=2:CNhs10617 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10012 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10012 | |||
|name=brain, adult, pool1 | |name=brain, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 62: | ||
|profile_cagescan=NCig10014,,, | |profile_cagescan=NCig10014,,, | ||
|profile_hcage=CNhs10617,LSID656,release008,COMPLETED | |profile_hcage=CNhs10617,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -3 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -3 | ||
Line 59: | Line 80: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 102: | ||
|top_motifs=REST:4.00392141867;NHLH1,2:3.95683627154;MYFfamily:3.82661671215;ZBTB6:3.47605095004;EGR1..3:3.24464451216;ZFP161:3.19104573424;MTE{core}:3.15335538435;MTF1:3.10417464621;PRRX1,2:3.05421372278;SOX5:3.02441606329;AHR_ARNT_ARNT2:2.98717274392;MED-1{core}:2.94215710474;PAX5:2.91403965885;ATF2:2.87387844209;FOXM1:2.86001905783;CUX2:2.82138457679;GTF2I:2.74800107464;HOXA9_MEIS1:2.70777734688;PAX6:2.66751675057;NKX3-2:2.66428500828;RREB1:2.66177858971;TFAP2B:2.64577350262;SOX2:2.62915978013;NFIX:2.58737745245;PRDM1:2.5547762487;RFX1:2.54544671392;HIC1:2.50045508956;MZF1:2.43508292521;DBP:2.39380293016;OCT4_SOX2{dimer}:2.37467816753;SMAD1..7,9:2.23748355146;MAFB:2.22267186511;PATZ1:2.21768817832;RFX2..5_RFXANK_RFXAP:2.16593907968;SOX{8,9,10}:2.14696612518;JUN:2.12399869755;MAZ:2.11562586773;GATA4:2.11334137302;KLF4:2.091464024;POU5F1:2.06705030131;SOX17:2.04704070061;LMO2:2.03826251136;ARID5B:1.91970427688;EBF1:1.89269513247;GFI1B:1.87121109402;HBP1_HMGB_SSRP1_UBTF:1.85613599229;BREu{core}:1.78971516324;XBP1:1.76262450522;FOXQ1:1.69121066317;TFDP1:1.69079792543;GCM1,2:1.66750135046;POU6F1:1.63300795526;ZNF423:1.60435679984;TGIF1:1.58091769395;CDC5L:1.56979117874;EP300:1.56738083503;ESRRA:1.5509928175;RBPJ:1.37681835282;NRF1:1.36454433408;LEF1_TCF7_TCF7L1,2:1.32696062195;NKX2-3_NKX2-5:1.30678228403;HOX{A4,D4}:1.26176472627;FOX{F1,F2,J1}:1.25729238265;FOXP3:1.21536121253;NFIL3:1.16789720827;POU3F1..4:1.1482447968;T:1.08499986787;GTF2A1,2:1.04690138114;HMGA1,2:1.04508301755;MYOD1:1.03173596465;NANOG:0.98221659772;ZNF384:0.980598565336;STAT1,3:0.954378926914;ZNF238:0.946022334586;CRX:0.928657435639;RORA:0.863502597801;AR:0.851218253105;SPZ1:0.842898435769;HAND1,2:0.828537803525;SP1:0.828060423963;SREBF1,2:0.805555756236;ZEB1:0.799903287086;ZIC1..3:0.797585411995;TFAP2{A,C}:0.78273720096;FOXD3:0.772034382914;NKX6-1,2:0.755727092173;BPTF:0.734603835679;YY1:0.698307496319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.68200314601;MYBL2:0.667170331882;IKZF2:0.66561908564;TLX1..3_NFIC{dimer}:0.645376576579;HMX1:0.616873038274;MEF2{A,B,C,D}:0.608085296525;TLX2:0.59819234902;GZF1:0.596289102607;ZNF143:0.578668837377;NR3C1:0.562006080724;ONECUT1,2:0.516187688967;TBX4,5:0.511021587046;STAT2,4,6:0.475641302522;TEF:0.468335855432;UFEwm:0.451994432396;FOX{D1,D2}:0.444944123428;FOXL1:0.41713751873;GFI1:0.388175797535;CREB1:0.337307612856;ADNP_IRX_SIX_ZHX:0.32533727748;ATF4:0.315352396936;bHLH_family:0.296781813763;PAX4:0.231193549416;IKZF1:0.230455429543;PAX1,9:0.228957277693;PBX1:0.18551043156;NFE2L1:0.140024910098;ALX1:0.126973747371;NANOG{mouse}:0.11515638811;IRF7:0.103692876174;XCPE1{core}:0.0999307093813;ATF5_CREB3:0.0896131878642;FOXN1:0.0676795618661;TFAP4:0.065897459847;HOX{A6,A7,B6,B7}:0.0522136441464;NFE2L2:-0.016260817694;NR1H4:-0.0462701739943;PAX2:-0.0657095561818;ZNF148:-0.06803335277;FOX{I1,J2}:-0.0821133793887;NFY{A,B,C}:-0.0915162228568;PDX1:-0.0950743779937;SNAI1..3:-0.0996608396817;NFATC1..3:-0.172372169082;VSX1,2:-0.174306318706;FOXP1:-0.192250284195;NR5A1,2:-0.224374060842;IRF1,2:-0.238323367691;FOXO1,3,4:-0.309527155323;ESR1:-0.316848371501;DMAP1_NCOR{1,2}_SMARC:-0.373492690869;FOXA2:-0.385744123452;HSF1,2:-0.388879617001;SPI1:-0.39336946299;LHX3,4:-0.401833576899;TFCP2:-0.402581403837;NFE2:-0.403811068505;NKX2-2,8:-0.412014129511;CEBPA,B_DDIT3:-0.441032868989;ATF6:-0.558684742989;SPIB:-0.627764888895;ETS1,2:-0.685165550041;PAX3,7:-0.719186677792;GATA6:-0.731371239131;HNF1A:-0.732203880232;TOPORS:-0.746439269954;TAL1_TCF{3,4,12}:-0.763812197577;TBP:-0.770270069061;TP53:-0.770350750705;POU1F1:-0.777425705525;FOSL2:-0.806499079609;HNF4A_NR2F1,2:-0.828453791748;RXR{A,B,G}:-0.890259120154;PAX8:-0.899739312895;BACH2:-0.930607713076;RUNX1..3:-0.946964625239;FOS_FOS{B,L1}_JUN{B,D}:-1.00887828207;GLI1..3:-1.01395059182;EVI1:-1.04654552829;TEAD1:-1.05647049849;ALX4:-1.07090508143;E2F1..5:-1.15108443157;ZBTB16:-1.18938980068;NFKB1_REL_RELA:-1.19032506545;NKX3-1:-1.20047918226;SRF:-1.28117795882;CDX1,2,4:-1.28224875445;POU2F1..3:-1.2882434316;HLF:-1.29532150501;HIF1A:-1.32278376032;MYB:-1.36781835619;RXRA_VDR{dimer}:-1.38282951087;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40340395981;ELK1,4_GABP{A,B1}:-1.40364703634;NR6A1:-1.52911217582;STAT5{A,B}:-1.53487219856;NKX2-1,4:-1.53623903372;ELF1,2,4:-1.58497440119;PPARG:-1.65161613442;HES1:-1.67703586126;EN1,2:-1.72388557049;PITX1..3:-1.94841013439;AIRE:-2.01257721933;HOX{A5,B5}:-2.79274975738 | |top_motifs=REST:4.00392141867;NHLH1,2:3.95683627154;MYFfamily:3.82661671215;ZBTB6:3.47605095004;EGR1..3:3.24464451216;ZFP161:3.19104573424;MTE{core}:3.15335538435;MTF1:3.10417464621;PRRX1,2:3.05421372278;SOX5:3.02441606329;AHR_ARNT_ARNT2:2.98717274392;MED-1{core}:2.94215710474;PAX5:2.91403965885;ATF2:2.87387844209;FOXM1:2.86001905783;CUX2:2.82138457679;GTF2I:2.74800107464;HOXA9_MEIS1:2.70777734688;PAX6:2.66751675057;NKX3-2:2.66428500828;RREB1:2.66177858971;TFAP2B:2.64577350262;SOX2:2.62915978013;NFIX:2.58737745245;PRDM1:2.5547762487;RFX1:2.54544671392;HIC1:2.50045508956;MZF1:2.43508292521;DBP:2.39380293016;OCT4_SOX2{dimer}:2.37467816753;SMAD1..7,9:2.23748355146;MAFB:2.22267186511;PATZ1:2.21768817832;RFX2..5_RFXANK_RFXAP:2.16593907968;SOX{8,9,10}:2.14696612518;JUN:2.12399869755;MAZ:2.11562586773;GATA4:2.11334137302;KLF4:2.091464024;POU5F1:2.06705030131;SOX17:2.04704070061;LMO2:2.03826251136;ARID5B:1.91970427688;EBF1:1.89269513247;GFI1B:1.87121109402;HBP1_HMGB_SSRP1_UBTF:1.85613599229;BREu{core}:1.78971516324;XBP1:1.76262450522;FOXQ1:1.69121066317;TFDP1:1.69079792543;GCM1,2:1.66750135046;POU6F1:1.63300795526;ZNF423:1.60435679984;TGIF1:1.58091769395;CDC5L:1.56979117874;EP300:1.56738083503;ESRRA:1.5509928175;RBPJ:1.37681835282;NRF1:1.36454433408;LEF1_TCF7_TCF7L1,2:1.32696062195;NKX2-3_NKX2-5:1.30678228403;HOX{A4,D4}:1.26176472627;FOX{F1,F2,J1}:1.25729238265;FOXP3:1.21536121253;NFIL3:1.16789720827;POU3F1..4:1.1482447968;T:1.08499986787;GTF2A1,2:1.04690138114;HMGA1,2:1.04508301755;MYOD1:1.03173596465;NANOG:0.98221659772;ZNF384:0.980598565336;STAT1,3:0.954378926914;ZNF238:0.946022334586;CRX:0.928657435639;RORA:0.863502597801;AR:0.851218253105;SPZ1:0.842898435769;HAND1,2:0.828537803525;SP1:0.828060423963;SREBF1,2:0.805555756236;ZEB1:0.799903287086;ZIC1..3:0.797585411995;TFAP2{A,C}:0.78273720096;FOXD3:0.772034382914;NKX6-1,2:0.755727092173;BPTF:0.734603835679;YY1:0.698307496319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.68200314601;MYBL2:0.667170331882;IKZF2:0.66561908564;TLX1..3_NFIC{dimer}:0.645376576579;HMX1:0.616873038274;MEF2{A,B,C,D}:0.608085296525;TLX2:0.59819234902;GZF1:0.596289102607;ZNF143:0.578668837377;NR3C1:0.562006080724;ONECUT1,2:0.516187688967;TBX4,5:0.511021587046;STAT2,4,6:0.475641302522;TEF:0.468335855432;UFEwm:0.451994432396;FOX{D1,D2}:0.444944123428;FOXL1:0.41713751873;GFI1:0.388175797535;CREB1:0.337307612856;ADNP_IRX_SIX_ZHX:0.32533727748;ATF4:0.315352396936;bHLH_family:0.296781813763;PAX4:0.231193549416;IKZF1:0.230455429543;PAX1,9:0.228957277693;PBX1:0.18551043156;NFE2L1:0.140024910098;ALX1:0.126973747371;NANOG{mouse}:0.11515638811;IRF7:0.103692876174;XCPE1{core}:0.0999307093813;ATF5_CREB3:0.0896131878642;FOXN1:0.0676795618661;TFAP4:0.065897459847;HOX{A6,A7,B6,B7}:0.0522136441464;NFE2L2:-0.016260817694;NR1H4:-0.0462701739943;PAX2:-0.0657095561818;ZNF148:-0.06803335277;FOX{I1,J2}:-0.0821133793887;NFY{A,B,C}:-0.0915162228568;PDX1:-0.0950743779937;SNAI1..3:-0.0996608396817;NFATC1..3:-0.172372169082;VSX1,2:-0.174306318706;FOXP1:-0.192250284195;NR5A1,2:-0.224374060842;IRF1,2:-0.238323367691;FOXO1,3,4:-0.309527155323;ESR1:-0.316848371501;DMAP1_NCOR{1,2}_SMARC:-0.373492690869;FOXA2:-0.385744123452;HSF1,2:-0.388879617001;SPI1:-0.39336946299;LHX3,4:-0.401833576899;TFCP2:-0.402581403837;NFE2:-0.403811068505;NKX2-2,8:-0.412014129511;CEBPA,B_DDIT3:-0.441032868989;ATF6:-0.558684742989;SPIB:-0.627764888895;ETS1,2:-0.685165550041;PAX3,7:-0.719186677792;GATA6:-0.731371239131;HNF1A:-0.732203880232;TOPORS:-0.746439269954;TAL1_TCF{3,4,12}:-0.763812197577;TBP:-0.770270069061;TP53:-0.770350750705;POU1F1:-0.777425705525;FOSL2:-0.806499079609;HNF4A_NR2F1,2:-0.828453791748;RXR{A,B,G}:-0.890259120154;PAX8:-0.899739312895;BACH2:-0.930607713076;RUNX1..3:-0.946964625239;FOS_FOS{B,L1}_JUN{B,D}:-1.00887828207;GLI1..3:-1.01395059182;EVI1:-1.04654552829;TEAD1:-1.05647049849;ALX4:-1.07090508143;E2F1..5:-1.15108443157;ZBTB16:-1.18938980068;NFKB1_REL_RELA:-1.19032506545;NKX3-1:-1.20047918226;SRF:-1.28117795882;CDX1,2,4:-1.28224875445;POU2F1..3:-1.2882434316;HLF:-1.29532150501;HIF1A:-1.32278376032;MYB:-1.36781835619;RXRA_VDR{dimer}:-1.38282951087;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40340395981;ELK1,4_GABP{A,B1}:-1.40364703634;NR6A1:-1.52911217582;STAT5{A,B}:-1.53487219856;NKX2-1,4:-1.53623903372;ELF1,2,4:-1.58497440119;PPARG:-1.65161613442;HES1:-1.67703586126;EN1,2:-1.72388557049;PITX1..3:-1.94841013439;AIRE:-2.01257721933;HOX{A5,B5}:-2.79274975738 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10012-101C3;search_select_hide=table117:FF:10012-101C3 | |||
}} | }} |
Latest revision as of 12:13, 3 June 2020
Name: | brain, adult, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10617 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10617
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10617
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0429 |
10 | 10 | 0.0284 |
100 | 100 | 0.236 |
101 | 101 | 0.806 |
102 | 102 | 0.731 |
103 | 103 | 0.283 |
104 | 104 | 0.139 |
105 | 105 | 0.147 |
106 | 106 | 0.0801 |
107 | 107 | 0.18 |
108 | 108 | 0.903 |
109 | 109 | 0.00779 |
11 | 11 | 0.0135 |
110 | 110 | 0.0327 |
111 | 111 | 0.0633 |
112 | 112 | 0.525 |
113 | 113 | 0.662 |
114 | 114 | 0.123 |
115 | 115 | 0.583 |
116 | 116 | 0.208 |
117 | 117 | 0.00796 |
118 | 118 | 0.0985 |
119 | 119 | 0.126 |
12 | 12 | 0.524 |
120 | 120 | 0.188 |
121 | 121 | 0.445 |
122 | 122 | 0.697 |
123 | 123 | 0.26 |
124 | 124 | 0.0427 |
125 | 125 | 0.277 |
126 | 126 | 0.0393 |
127 | 127 | 0.545 |
128 | 128 | 0.272 |
129 | 129 | 0.524 |
13 | 13 | 4.20359e-4 |
130 | 130 | 0.371 |
131 | 131 | 0.0408 |
132 | 132 | 0.681 |
133 | 133 | 0.00144 |
134 | 134 | 0.386 |
135 | 135 | 0.0754 |
136 | 136 | 0.00548 |
137 | 137 | 0.865 |
138 | 138 | 0.827 |
139 | 139 | 0.12 |
14 | 14 | 0.782 |
140 | 140 | 0.138 |
141 | 141 | 0.377 |
142 | 142 | 0.82 |
143 | 143 | 0.0144 |
144 | 144 | 0.962 |
145 | 145 | 0.0805 |
146 | 146 | 0.55 |
147 | 147 | 0.902 |
148 | 148 | 0.457 |
149 | 149 | 0.471 |
15 | 15 | 0.0581 |
150 | 150 | 0.135 |
151 | 151 | 0.68 |
152 | 152 | 0.135 |
153 | 153 | 0.824 |
154 | 154 | 0.589 |
155 | 155 | 0.448 |
156 | 156 | 0.36 |
157 | 157 | 0.439 |
158 | 158 | 0.924 |
159 | 159 | 0.0935 |
16 | 16 | 0.0858 |
160 | 160 | 0.281 |
161 | 161 | 0.18 |
162 | 162 | 0.773 |
163 | 163 | 0.708 |
164 | 164 | 0.0141 |
165 | 165 | 0.0747 |
166 | 166 | 0.922 |
167 | 167 | 0.415 |
168 | 168 | 0.629 |
169 | 169 | 0.0102 |
17 | 17 | 0.17 |
18 | 18 | 0.282 |
19 | 19 | 0.252 |
2 | 2 | 0.913 |
20 | 20 | 0.0592 |
21 | 21 | 0.0566 |
22 | 22 | 0.277 |
23 | 23 | 0.533 |
24 | 24 | 0.0958 |
25 | 25 | 0.466 |
26 | 26 | 5.73358e-5 |
27 | 27 | 0.885 |
28 | 28 | 0.595 |
29 | 29 | 0.00891 |
3 | 3 | 0.0279 |
30 | 30 | 0.57 |
31 | 31 | 0.988 |
32 | 32 | 0.0589 |
33 | 33 | 0.0632 |
34 | 34 | 0.836 |
35 | 35 | 0.588 |
36 | 36 | 0.118 |
37 | 37 | 0.0349 |
38 | 38 | 0.33 |
39 | 39 | 0.298 |
4 | 4 | 0.794 |
40 | 40 | 0.0403 |
41 | 41 | 0.435 |
42 | 42 | 0.154 |
43 | 43 | 0.118 |
44 | 44 | 0.283 |
45 | 45 | 0.822 |
46 | 46 | 0.061 |
47 | 47 | 0.0673 |
48 | 48 | 0.049 |
49 | 49 | 0.125 |
5 | 5 | 0.563 |
50 | 50 | 0.304 |
51 | 51 | 0.553 |
52 | 52 | 0.746 |
53 | 53 | 0.898 |
54 | 54 | 0.493 |
55 | 55 | 0.444 |
56 | 56 | 0.48 |
57 | 57 | 0.192 |
58 | 58 | 0.304 |
59 | 59 | 0.208 |
6 | 6 | 0.666 |
60 | 60 | 0.0956 |
61 | 61 | 0.0637 |
62 | 62 | 0.203 |
63 | 63 | 0.16 |
64 | 64 | 0.204 |
65 | 65 | 0.326 |
66 | 66 | 0.175 |
67 | 67 | 0.343 |
68 | 68 | 0.237 |
69 | 69 | 0.547 |
7 | 7 | 0.0447 |
70 | 70 | 0.0388 |
71 | 71 | 0.00707 |
72 | 72 | 0.511 |
73 | 73 | 0.0362 |
74 | 74 | 0.762 |
75 | 75 | 0.025 |
76 | 76 | 0.263 |
77 | 77 | 0.262 |
78 | 78 | 0.00168 |
79 | 79 | 0.434 |
8 | 8 | 0.0746 |
80 | 80 | 0.914 |
81 | 81 | 0.67 |
82 | 82 | 0.6 |
83 | 83 | 0.248 |
84 | 84 | 0.505 |
85 | 85 | 0.295 |
86 | 86 | 0.202 |
87 | 87 | 0.00542 |
88 | 88 | 0.828 |
89 | 89 | 0.699 |
9 | 9 | 0.539 |
90 | 90 | 0.0749 |
91 | 91 | 0.558 |
92 | 92 | 0.574 |
93 | 93 | 0.973 |
94 | 94 | 0.0916 |
95 | 95 | 0.0176 |
96 | 96 | 0.938 |
97 | 97 | 0.712 |
98 | 98 | 0.202 |
99 | 99 | 0.918 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10617
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010012 human brain - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010012 (human brain - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)